Multiple sequence alignment - TraesCS2B01G278400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G278400 chr2B 100.000 2423 0 0 1 2423 384343444 384341022 0.000000e+00 4475.0
1 TraesCS2B01G278400 chr2B 99.338 151 1 0 1757 1907 788124160 788124310 8.530000e-70 274.0
2 TraesCS2B01G278400 chr2D 92.381 1785 72 30 1 1756 316288726 316286977 0.000000e+00 2484.0
3 TraesCS2B01G278400 chr2D 91.525 118 8 2 1781 1897 650770550 650770434 6.930000e-36 161.0
4 TraesCS2B01G278400 chr2D 84.247 146 20 3 2097 2239 570989766 570989621 3.250000e-29 139.0
5 TraesCS2B01G278400 chr2D 91.667 48 2 2 1908 1955 316286985 316286940 5.590000e-07 65.8
6 TraesCS2B01G278400 chr2A 90.289 1802 70 33 1 1756 418820794 418822536 0.000000e+00 2261.0
7 TraesCS2B01G278400 chr2A 100.000 155 0 0 1757 1911 585694668 585694822 1.100000e-73 287.0
8 TraesCS2B01G278400 chr2A 86.508 126 17 0 2097 2222 740406761 740406886 3.250000e-29 139.0
9 TraesCS2B01G278400 chr2A 88.889 54 6 0 1969 2022 418822631 418822684 1.550000e-07 67.6
10 TraesCS2B01G278400 chr5D 100.000 151 0 0 1757 1907 241109584 241109434 1.830000e-71 279.0
11 TraesCS2B01G278400 chr6D 99.338 151 1 0 1757 1907 402884123 402883973 8.530000e-70 274.0
12 TraesCS2B01G278400 chr6D 85.714 133 19 0 2256 2388 413060833 413060965 9.030000e-30 141.0
13 TraesCS2B01G278400 chr6B 91.391 151 11 2 1758 1907 602493519 602493668 3.160000e-49 206.0
14 TraesCS2B01G278400 chr5A 91.391 151 11 2 1758 1907 626106634 626106485 3.160000e-49 206.0
15 TraesCS2B01G278400 chr5B 98.734 79 1 0 1829 1907 408227201 408227279 9.030000e-30 141.0
16 TraesCS2B01G278400 chr4D 97.619 42 1 0 2181 2222 109892166 109892207 3.340000e-09 73.1
17 TraesCS2B01G278400 chr1A 100.000 31 0 0 2192 2222 387843436 387843406 9.360000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G278400 chr2B 384341022 384343444 2422 True 4475.0 4475 100.000 1 2423 1 chr2B.!!$R1 2422
1 TraesCS2B01G278400 chr2D 316286940 316288726 1786 True 1274.9 2484 92.024 1 1955 2 chr2D.!!$R3 1954
2 TraesCS2B01G278400 chr2A 418820794 418822684 1890 False 1164.3 2261 89.589 1 2022 2 chr2A.!!$F3 2021

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 959 0.179 CTTCGGCTACAAGGGCAGAT 59.821 55.0 0.0 0.0 34.34 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1795 1864 0.029567 GCTGGATTCGATCGTCGTCT 59.97 55.0 15.94 0.0 41.35 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
233 234 9.241317 TCGGTAAAGATCTAAACGCTTTTATAG 57.759 33.333 9.90 0.00 34.12 1.31
234 235 9.028185 CGGTAAAGATCTAAACGCTTTTATAGT 57.972 33.333 0.00 0.00 34.12 2.12
252 253 9.603921 TTTTATAGTATTTCTTTACGGTGGGAG 57.396 33.333 0.00 0.00 0.00 4.30
253 254 6.803366 ATAGTATTTCTTTACGGTGGGAGT 57.197 37.500 0.00 0.00 0.00 3.85
254 255 7.902920 ATAGTATTTCTTTACGGTGGGAGTA 57.097 36.000 0.00 0.00 0.00 2.59
255 256 5.970592 AGTATTTCTTTACGGTGGGAGTAC 58.029 41.667 0.00 0.00 0.00 2.73
293 294 6.887545 CGTAATATTATCAAGGGGGCCAAATA 59.112 38.462 4.39 0.00 0.00 1.40
315 316 0.593128 CAAAGCGGGAAGACCAACAG 59.407 55.000 0.00 0.00 40.22 3.16
345 362 5.237048 TCGGAAATCGAATGATCATATGCA 58.763 37.500 9.04 0.00 45.86 3.96
347 364 5.446875 CGGAAATCGAATGATCATATGCAGG 60.447 44.000 9.04 0.00 42.43 4.85
350 367 4.879197 TCGAATGATCATATGCAGGAGT 57.121 40.909 9.04 0.00 0.00 3.85
352 369 5.714047 TCGAATGATCATATGCAGGAGTAC 58.286 41.667 9.04 0.00 0.00 2.73
355 372 7.340487 TCGAATGATCATATGCAGGAGTACTAT 59.660 37.037 9.04 0.00 0.00 2.12
524 546 7.526142 TGGCATCGAGTAGAGTAGAAATTAT 57.474 36.000 0.00 0.00 0.00 1.28
582 612 2.171940 GCTTGTTCAGACGCGCTG 59.828 61.111 19.99 19.99 46.31 5.18
583 613 2.856032 CTTGTTCAGACGCGCTGG 59.144 61.111 23.70 7.76 44.98 4.85
584 614 1.956170 CTTGTTCAGACGCGCTGGT 60.956 57.895 23.70 0.00 44.98 4.00
585 615 2.162921 CTTGTTCAGACGCGCTGGTG 62.163 60.000 23.70 10.19 44.98 4.17
586 616 3.414700 GTTCAGACGCGCTGGTGG 61.415 66.667 23.70 5.34 44.98 4.61
708 739 3.916392 GACGGTCAGGTCAGTGGCG 62.916 68.421 2.62 0.00 36.91 5.69
710 741 2.262915 GGTCAGGTCAGTGGCGAG 59.737 66.667 0.00 0.00 0.00 5.03
781 815 0.535797 AAATCGGTCGGTCCTCTTCC 59.464 55.000 0.00 0.00 0.00 3.46
786 820 1.000612 GTCGGTCCTCTTCCCCTCT 59.999 63.158 0.00 0.00 0.00 3.69
787 821 1.038681 GTCGGTCCTCTTCCCCTCTC 61.039 65.000 0.00 0.00 0.00 3.20
788 822 1.215679 TCGGTCCTCTTCCCCTCTCT 61.216 60.000 0.00 0.00 0.00 3.10
845 879 2.335011 GGGCGCCACAAACAGAAC 59.665 61.111 30.85 1.84 0.00 3.01
865 899 2.912956 ACCAGAGACAGAGAGAGAGAGT 59.087 50.000 0.00 0.00 0.00 3.24
867 901 3.307691 CCAGAGACAGAGAGAGAGAGTGT 60.308 52.174 0.00 0.00 0.00 3.55
869 903 3.327757 AGAGACAGAGAGAGAGAGTGTGT 59.672 47.826 0.00 0.00 0.00 3.72
907 941 4.439289 GCTTGCTTGATTAATTCTTCGGCT 60.439 41.667 0.00 0.00 0.00 5.52
908 942 5.220854 GCTTGCTTGATTAATTCTTCGGCTA 60.221 40.000 0.00 0.00 0.00 3.93
919 959 0.179000 CTTCGGCTACAAGGGCAGAT 59.821 55.000 0.00 0.00 34.34 2.90
920 960 1.412710 CTTCGGCTACAAGGGCAGATA 59.587 52.381 0.00 0.00 34.34 1.98
953 993 2.834549 AGAGGCAAAGATTTCTCTCGGA 59.165 45.455 0.00 0.00 31.67 4.55
1127 1180 0.469144 CCTCCTCCTACCTCTCCTGC 60.469 65.000 0.00 0.00 0.00 4.85
1129 1182 1.458588 CCTCCTACCTCTCCTGCCC 60.459 68.421 0.00 0.00 0.00 5.36
1165 1218 1.483827 GATGGAGCTGATGAGTGGTGA 59.516 52.381 0.00 0.00 0.00 4.02
1534 1587 2.817844 ACCGCGTGTAGCTATGATATGA 59.182 45.455 4.92 0.00 45.59 2.15
1544 1597 5.686159 AGCTATGATATGAAAGCAGCAAC 57.314 39.130 0.00 0.00 37.44 4.17
1570 1625 0.812549 GAGACGGAGGGAGAAGTGAC 59.187 60.000 0.00 0.00 0.00 3.67
1599 1664 2.283884 TGTCGATTCGCGTGTACGTATA 59.716 45.455 5.77 0.00 42.22 1.47
1725 1794 4.834357 TGTTCGTGTGCTAGTACAGTAA 57.166 40.909 14.45 8.64 0.00 2.24
1746 1815 8.511321 CAGTAAATGCTAGTAATTTGGTTGTCA 58.489 33.333 12.95 0.00 0.00 3.58
1747 1816 9.073475 AGTAAATGCTAGTAATTTGGTTGTCAA 57.927 29.630 12.95 0.00 0.00 3.18
1748 1817 9.855021 GTAAATGCTAGTAATTTGGTTGTCAAT 57.145 29.630 12.95 0.00 34.98 2.57
1750 1819 9.777297 AAATGCTAGTAATTTGGTTGTCAATTT 57.223 25.926 5.14 0.00 34.98 1.82
1751 1820 8.761575 ATGCTAGTAATTTGGTTGTCAATTTG 57.238 30.769 0.00 0.00 34.98 2.32
1752 1821 7.946207 TGCTAGTAATTTGGTTGTCAATTTGA 58.054 30.769 0.00 0.00 34.98 2.69
1753 1822 8.417106 TGCTAGTAATTTGGTTGTCAATTTGAA 58.583 29.630 0.00 0.00 34.98 2.69
1754 1823 9.255304 GCTAGTAATTTGGTTGTCAATTTGAAA 57.745 29.630 0.00 0.00 34.98 2.69
1756 1825 8.661352 AGTAATTTGGTTGTCAATTTGAAAGG 57.339 30.769 0.00 0.00 34.98 3.11
1757 1826 8.482128 AGTAATTTGGTTGTCAATTTGAAAGGA 58.518 29.630 0.00 0.00 34.98 3.36
1758 1827 7.790823 AATTTGGTTGTCAATTTGAAAGGAG 57.209 32.000 0.00 0.00 34.98 3.69
1759 1828 4.320608 TGGTTGTCAATTTGAAAGGAGC 57.679 40.909 0.00 0.00 0.00 4.70
1760 1829 3.703556 TGGTTGTCAATTTGAAAGGAGCA 59.296 39.130 0.00 0.00 0.00 4.26
1761 1830 4.161189 TGGTTGTCAATTTGAAAGGAGCAA 59.839 37.500 0.00 0.00 0.00 3.91
1762 1831 5.163322 TGGTTGTCAATTTGAAAGGAGCAAT 60.163 36.000 0.00 0.00 0.00 3.56
1763 1832 5.178067 GGTTGTCAATTTGAAAGGAGCAATG 59.822 40.000 0.00 0.00 0.00 2.82
1764 1833 4.309099 TGTCAATTTGAAAGGAGCAATGC 58.691 39.130 0.00 0.00 0.00 3.56
1765 1834 4.039488 TGTCAATTTGAAAGGAGCAATGCT 59.961 37.500 7.79 7.79 43.88 3.79
1766 1835 5.243507 TGTCAATTTGAAAGGAGCAATGCTA 59.756 36.000 8.12 0.00 39.88 3.49
1767 1836 6.071221 TGTCAATTTGAAAGGAGCAATGCTAT 60.071 34.615 8.12 0.00 39.88 2.97
1768 1837 6.255020 GTCAATTTGAAAGGAGCAATGCTATG 59.745 38.462 8.12 0.00 39.88 2.23
1769 1838 3.788333 TTGAAAGGAGCAATGCTATGC 57.212 42.857 8.12 6.22 46.78 3.14
1775 1844 3.717899 GCAATGCTATGCGGACGA 58.282 55.556 0.00 0.00 36.45 4.20
1776 1845 1.276844 GCAATGCTATGCGGACGAC 59.723 57.895 0.00 0.00 36.45 4.34
1777 1846 1.428370 GCAATGCTATGCGGACGACA 61.428 55.000 0.00 0.00 36.45 4.35
1778 1847 1.006086 CAATGCTATGCGGACGACAA 58.994 50.000 0.00 0.00 0.00 3.18
1779 1848 1.006832 AATGCTATGCGGACGACAAC 58.993 50.000 0.00 0.00 0.00 3.32
1780 1849 0.175760 ATGCTATGCGGACGACAACT 59.824 50.000 0.00 0.00 0.00 3.16
1781 1850 0.037697 TGCTATGCGGACGACAACTT 60.038 50.000 0.00 0.00 0.00 2.66
1782 1851 1.076332 GCTATGCGGACGACAACTTT 58.924 50.000 0.00 0.00 0.00 2.66
1783 1852 1.463444 GCTATGCGGACGACAACTTTT 59.537 47.619 0.00 0.00 0.00 2.27
1784 1853 2.724839 GCTATGCGGACGACAACTTTTG 60.725 50.000 0.00 0.00 0.00 2.44
1785 1854 0.591170 ATGCGGACGACAACTTTTGG 59.409 50.000 0.00 0.00 34.12 3.28
1786 1855 0.462225 TGCGGACGACAACTTTTGGA 60.462 50.000 0.00 0.00 34.12 3.53
1787 1856 0.041576 GCGGACGACAACTTTTGGAC 60.042 55.000 0.00 0.00 34.12 4.02
1788 1857 0.231279 CGGACGACAACTTTTGGACG 59.769 55.000 0.00 0.00 39.24 4.79
1789 1858 1.574134 GGACGACAACTTTTGGACGA 58.426 50.000 12.24 0.00 37.74 4.20
1790 1859 2.140717 GGACGACAACTTTTGGACGAT 58.859 47.619 12.24 1.28 37.74 3.73
1791 1860 2.546789 GGACGACAACTTTTGGACGATT 59.453 45.455 12.24 0.00 37.74 3.34
1792 1861 3.002965 GGACGACAACTTTTGGACGATTT 59.997 43.478 12.24 0.00 37.74 2.17
1793 1862 3.947626 ACGACAACTTTTGGACGATTTG 58.052 40.909 12.24 0.00 37.74 2.32
1794 1863 2.719046 CGACAACTTTTGGACGATTTGC 59.281 45.455 0.00 0.00 36.97 3.68
1795 1864 3.701241 GACAACTTTTGGACGATTTGCA 58.299 40.909 0.00 0.00 34.12 4.08
1796 1865 3.705604 ACAACTTTTGGACGATTTGCAG 58.294 40.909 0.00 0.00 34.12 4.41
1797 1866 3.380004 ACAACTTTTGGACGATTTGCAGA 59.620 39.130 0.00 0.00 34.12 4.26
1798 1867 3.626028 ACTTTTGGACGATTTGCAGAC 57.374 42.857 0.00 0.00 0.00 3.51
1799 1868 2.032030 ACTTTTGGACGATTTGCAGACG 60.032 45.455 0.00 7.49 0.00 4.18
1800 1869 1.872388 TTTGGACGATTTGCAGACGA 58.128 45.000 14.13 0.00 0.00 4.20
1801 1870 1.144969 TTGGACGATTTGCAGACGAC 58.855 50.000 14.13 8.96 0.00 4.34
1802 1871 1.006825 TGGACGATTTGCAGACGACG 61.007 55.000 14.13 0.00 0.00 5.12
1803 1872 0.731514 GGACGATTTGCAGACGACGA 60.732 55.000 0.00 0.00 0.00 4.20
1804 1873 1.269166 GACGATTTGCAGACGACGAT 58.731 50.000 0.00 0.00 0.00 3.73
1805 1874 1.253034 GACGATTTGCAGACGACGATC 59.747 52.381 0.00 0.00 0.00 3.69
1806 1875 0.224746 CGATTTGCAGACGACGATCG 59.775 55.000 14.88 14.88 46.93 3.69
1807 1876 1.545759 GATTTGCAGACGACGATCGA 58.454 50.000 24.34 0.00 43.74 3.59
1808 1877 1.917955 GATTTGCAGACGACGATCGAA 59.082 47.619 24.34 1.94 43.74 3.71
1809 1878 1.990799 TTTGCAGACGACGATCGAAT 58.009 45.000 24.34 6.15 43.74 3.34
1810 1879 1.545759 TTGCAGACGACGATCGAATC 58.454 50.000 24.34 15.18 43.74 2.52
1811 1880 0.248498 TGCAGACGACGATCGAATCC 60.248 55.000 24.34 8.10 43.74 3.01
1812 1881 0.248498 GCAGACGACGATCGAATCCA 60.248 55.000 24.34 0.00 43.74 3.41
1813 1882 1.747956 CAGACGACGATCGAATCCAG 58.252 55.000 24.34 8.24 43.74 3.86
1814 1883 0.029567 AGACGACGATCGAATCCAGC 59.970 55.000 24.34 4.16 43.74 4.85
1815 1884 1.262824 GACGACGATCGAATCCAGCG 61.263 60.000 24.34 14.37 43.74 5.18
1816 1885 2.011349 CGACGATCGAATCCAGCGG 61.011 63.158 24.34 0.00 43.74 5.52
1817 1886 1.065928 GACGATCGAATCCAGCGGT 59.934 57.895 24.34 0.00 0.00 5.68
1818 1887 0.309922 GACGATCGAATCCAGCGGTA 59.690 55.000 24.34 0.00 0.00 4.02
1819 1888 0.311165 ACGATCGAATCCAGCGGTAG 59.689 55.000 24.34 0.00 0.00 3.18
1820 1889 0.387367 CGATCGAATCCAGCGGTAGG 60.387 60.000 10.26 0.00 0.00 3.18
1821 1890 0.959553 GATCGAATCCAGCGGTAGGA 59.040 55.000 7.98 7.98 39.97 2.94
1822 1891 1.340248 GATCGAATCCAGCGGTAGGAA 59.660 52.381 9.32 0.00 38.93 3.36
1823 1892 1.410004 TCGAATCCAGCGGTAGGAAT 58.590 50.000 9.32 2.32 38.93 3.01
1824 1893 1.340248 TCGAATCCAGCGGTAGGAATC 59.660 52.381 9.32 9.51 38.93 2.52
1825 1894 1.341531 CGAATCCAGCGGTAGGAATCT 59.658 52.381 14.78 3.83 38.93 2.40
1826 1895 2.760374 GAATCCAGCGGTAGGAATCTG 58.240 52.381 9.32 0.00 38.93 2.90
1827 1896 1.051812 ATCCAGCGGTAGGAATCTGG 58.948 55.000 9.32 2.97 45.59 3.86
1828 1897 0.325296 TCCAGCGGTAGGAATCTGGT 60.325 55.000 6.97 0.00 44.76 4.00
1829 1898 0.105039 CCAGCGGTAGGAATCTGGTC 59.895 60.000 0.00 0.00 40.79 4.02
1830 1899 0.105039 CAGCGGTAGGAATCTGGTCC 59.895 60.000 0.00 0.00 38.03 4.46
1831 1900 0.325296 AGCGGTAGGAATCTGGTCCA 60.325 55.000 0.00 0.00 40.48 4.02
1832 1901 0.179081 GCGGTAGGAATCTGGTCCAC 60.179 60.000 0.00 0.00 40.48 4.02
1833 1902 1.191535 CGGTAGGAATCTGGTCCACA 58.808 55.000 0.00 0.00 40.48 4.17
1834 1903 1.553248 CGGTAGGAATCTGGTCCACAA 59.447 52.381 0.00 0.00 40.48 3.33
1835 1904 2.027561 CGGTAGGAATCTGGTCCACAAA 60.028 50.000 0.00 0.00 40.48 2.83
1836 1905 3.610911 GGTAGGAATCTGGTCCACAAAG 58.389 50.000 0.00 0.00 40.48 2.77
1837 1906 2.887151 AGGAATCTGGTCCACAAAGG 57.113 50.000 0.00 0.00 40.48 3.11
1838 1907 2.348472 AGGAATCTGGTCCACAAAGGA 58.652 47.619 0.00 0.00 46.75 3.36
1845 1914 2.032528 TCCACAAAGGAGCAGCGG 59.967 61.111 0.00 0.00 43.07 5.52
1846 1915 3.741476 CCACAAAGGAGCAGCGGC 61.741 66.667 0.00 0.00 41.22 6.53
1847 1916 3.741476 CACAAAGGAGCAGCGGCC 61.741 66.667 4.82 0.00 42.56 6.13
1859 1928 2.258286 GCGGCCGCTTGATTGTTT 59.742 55.556 41.71 0.00 38.26 2.83
1860 1929 1.372872 GCGGCCGCTTGATTGTTTT 60.373 52.632 41.71 0.00 38.26 2.43
1861 1930 1.616872 GCGGCCGCTTGATTGTTTTG 61.617 55.000 41.71 0.75 38.26 2.44
1862 1931 0.318614 CGGCCGCTTGATTGTTTTGT 60.319 50.000 14.67 0.00 0.00 2.83
1863 1932 1.418373 GGCCGCTTGATTGTTTTGTC 58.582 50.000 0.00 0.00 0.00 3.18
1864 1933 1.052287 GCCGCTTGATTGTTTTGTCG 58.948 50.000 0.00 0.00 0.00 4.35
1865 1934 1.599419 GCCGCTTGATTGTTTTGTCGT 60.599 47.619 0.00 0.00 0.00 4.34
1866 1935 2.043411 CCGCTTGATTGTTTTGTCGTG 58.957 47.619 0.00 0.00 0.00 4.35
1867 1936 1.447938 CGCTTGATTGTTTTGTCGTGC 59.552 47.619 0.00 0.00 0.00 5.34
1868 1937 2.458951 GCTTGATTGTTTTGTCGTGCA 58.541 42.857 0.00 0.00 0.00 4.57
1869 1938 2.216263 GCTTGATTGTTTTGTCGTGCAC 59.784 45.455 6.82 6.82 0.00 4.57
1870 1939 3.433709 CTTGATTGTTTTGTCGTGCACA 58.566 40.909 18.64 0.81 0.00 4.57
1871 1940 3.063670 TGATTGTTTTGTCGTGCACAG 57.936 42.857 18.64 9.95 35.97 3.66
1872 1941 2.680339 TGATTGTTTTGTCGTGCACAGA 59.320 40.909 18.64 12.26 35.97 3.41
1873 1942 3.314913 TGATTGTTTTGTCGTGCACAGAT 59.685 39.130 18.64 0.00 35.97 2.90
1874 1943 3.332761 TTGTTTTGTCGTGCACAGATC 57.667 42.857 18.64 10.04 35.97 2.75
1875 1944 1.260297 TGTTTTGTCGTGCACAGATCG 59.740 47.619 18.64 1.94 35.97 3.69
1876 1945 0.865111 TTTTGTCGTGCACAGATCGG 59.135 50.000 18.64 0.00 35.97 4.18
1877 1946 1.565156 TTTGTCGTGCACAGATCGGC 61.565 55.000 18.64 4.26 35.97 5.54
1878 1947 3.188786 GTCGTGCACAGATCGGCC 61.189 66.667 18.64 0.00 0.00 6.13
1879 1948 3.690280 TCGTGCACAGATCGGCCA 61.690 61.111 18.64 0.00 0.00 5.36
1880 1949 3.190849 CGTGCACAGATCGGCCAG 61.191 66.667 18.64 0.00 0.00 4.85
1881 1950 2.821366 GTGCACAGATCGGCCAGG 60.821 66.667 13.17 0.00 0.00 4.45
1882 1951 4.100084 TGCACAGATCGGCCAGGG 62.100 66.667 2.24 0.00 0.00 4.45
1884 1953 4.100084 CACAGATCGGCCAGGGCA 62.100 66.667 14.59 0.34 44.11 5.36
1885 1954 4.101448 ACAGATCGGCCAGGGCAC 62.101 66.667 14.59 3.80 44.11 5.01
1886 1955 4.100084 CAGATCGGCCAGGGCACA 62.100 66.667 14.59 0.00 44.11 4.57
1887 1956 3.092511 AGATCGGCCAGGGCACAT 61.093 61.111 14.59 3.80 44.11 3.21
1888 1957 2.592861 GATCGGCCAGGGCACATC 60.593 66.667 14.59 9.84 44.11 3.06
1889 1958 4.552365 ATCGGCCAGGGCACATCG 62.552 66.667 14.59 6.50 44.11 3.84
1892 1961 4.722700 GGCCAGGGCACATCGTGT 62.723 66.667 13.10 0.00 44.11 4.49
1904 1973 4.668576 CACATCGTGTGTAGAGCAATTT 57.331 40.909 9.19 0.00 43.08 1.82
1905 1974 4.641954 CACATCGTGTGTAGAGCAATTTC 58.358 43.478 9.19 0.00 43.08 2.17
1906 1975 3.367932 ACATCGTGTGTAGAGCAATTTCG 59.632 43.478 0.00 0.00 39.91 3.46
1968 2037 8.715191 AAACAAACACAAATCTGCTTATTTCA 57.285 26.923 0.00 0.00 0.00 2.69
1969 2038 8.715191 AACAAACACAAATCTGCTTATTTCAA 57.285 26.923 0.00 0.00 0.00 2.69
1970 2039 8.891671 ACAAACACAAATCTGCTTATTTCAAT 57.108 26.923 0.00 0.00 0.00 2.57
1971 2040 8.767085 ACAAACACAAATCTGCTTATTTCAATG 58.233 29.630 0.00 0.00 0.00 2.82
1972 2041 6.956299 ACACAAATCTGCTTATTTCAATGC 57.044 33.333 0.00 0.00 0.00 3.56
1975 2044 7.093814 ACACAAATCTGCTTATTTCAATGCCTA 60.094 33.333 0.00 0.00 0.00 3.93
1976 2045 7.434307 CACAAATCTGCTTATTTCAATGCCTAG 59.566 37.037 0.00 0.00 0.00 3.02
1977 2046 7.123247 ACAAATCTGCTTATTTCAATGCCTAGT 59.877 33.333 0.00 0.00 0.00 2.57
1978 2047 6.874288 ATCTGCTTATTTCAATGCCTAGTC 57.126 37.500 0.00 0.00 0.00 2.59
2008 2119 7.938140 ATACCATCCGATAATGTATTTTGGG 57.062 36.000 0.00 0.00 0.00 4.12
2012 2123 7.393234 ACCATCCGATAATGTATTTTGGGTATG 59.607 37.037 0.00 0.00 0.00 2.39
2017 2128 7.412563 CCGATAATGTATTTTGGGTATGTAGCG 60.413 40.741 0.00 0.00 0.00 4.26
2022 2133 5.363292 TGTATTTTGGGTATGTAGCGAGGTA 59.637 40.000 0.00 0.00 0.00 3.08
2023 2134 3.806625 TTTGGGTATGTAGCGAGGTAC 57.193 47.619 5.59 5.59 0.00 3.34
2024 2135 2.440517 TGGGTATGTAGCGAGGTACA 57.559 50.000 16.04 16.04 37.32 2.90
2025 2136 2.737544 TGGGTATGTAGCGAGGTACAA 58.262 47.619 17.35 6.32 36.51 2.41
2026 2137 3.098377 TGGGTATGTAGCGAGGTACAAA 58.902 45.455 17.35 0.00 36.51 2.83
2027 2138 3.707611 TGGGTATGTAGCGAGGTACAAAT 59.292 43.478 17.35 6.53 36.51 2.32
2028 2139 4.202182 TGGGTATGTAGCGAGGTACAAATC 60.202 45.833 17.35 11.03 36.51 2.17
2029 2140 4.304939 GGTATGTAGCGAGGTACAAATCC 58.695 47.826 17.35 15.01 36.51 3.01
2030 2141 2.572191 TGTAGCGAGGTACAAATCCG 57.428 50.000 12.07 0.00 29.74 4.18
2031 2142 2.093890 TGTAGCGAGGTACAAATCCGA 58.906 47.619 12.07 0.00 29.74 4.55
2032 2143 2.691526 TGTAGCGAGGTACAAATCCGAT 59.308 45.455 12.07 0.00 29.74 4.18
2033 2144 2.510768 AGCGAGGTACAAATCCGATC 57.489 50.000 0.00 0.00 0.00 3.69
2034 2145 1.068741 AGCGAGGTACAAATCCGATCC 59.931 52.381 0.00 0.00 0.00 3.36
2035 2146 1.202486 GCGAGGTACAAATCCGATCCA 60.202 52.381 0.00 0.00 0.00 3.41
2036 2147 2.743938 CGAGGTACAAATCCGATCCAG 58.256 52.381 0.00 0.00 0.00 3.86
2037 2148 2.484889 GAGGTACAAATCCGATCCAGC 58.515 52.381 0.00 0.00 0.00 4.85
2038 2149 1.141053 AGGTACAAATCCGATCCAGCC 59.859 52.381 0.00 0.00 0.00 4.85
2039 2150 1.134220 GGTACAAATCCGATCCAGCCA 60.134 52.381 0.00 0.00 0.00 4.75
2040 2151 2.213499 GTACAAATCCGATCCAGCCAG 58.787 52.381 0.00 0.00 0.00 4.85
2041 2152 0.107017 ACAAATCCGATCCAGCCAGG 60.107 55.000 0.00 0.00 39.47 4.45
2062 2173 4.767255 CACCCCTGCGCTCTGACC 62.767 72.222 9.73 0.00 0.00 4.02
2064 2175 4.767255 CCCCTGCGCTCTGACCAC 62.767 72.222 9.73 0.00 0.00 4.16
2065 2176 3.699894 CCCTGCGCTCTGACCACT 61.700 66.667 9.73 0.00 0.00 4.00
2066 2177 2.433838 CCTGCGCTCTGACCACTG 60.434 66.667 9.73 0.00 0.00 3.66
2067 2178 2.653115 CTGCGCTCTGACCACTGA 59.347 61.111 9.73 0.00 0.00 3.41
2068 2179 1.445754 CTGCGCTCTGACCACTGAG 60.446 63.158 9.73 0.00 42.40 3.35
2069 2180 2.152297 CTGCGCTCTGACCACTGAGT 62.152 60.000 9.73 0.00 41.82 3.41
2070 2181 1.005630 GCGCTCTGACCACTGAGTT 60.006 57.895 0.00 0.00 41.82 3.01
2071 2182 0.243907 GCGCTCTGACCACTGAGTTA 59.756 55.000 0.00 0.00 41.82 2.24
2072 2183 1.336887 GCGCTCTGACCACTGAGTTAA 60.337 52.381 0.00 0.00 41.82 2.01
2073 2184 2.600731 CGCTCTGACCACTGAGTTAAG 58.399 52.381 0.00 0.00 41.82 1.85
2074 2185 2.229062 CGCTCTGACCACTGAGTTAAGA 59.771 50.000 0.00 0.00 41.82 2.10
2075 2186 3.580731 GCTCTGACCACTGAGTTAAGAC 58.419 50.000 0.00 0.00 41.82 3.01
2076 2187 3.615351 GCTCTGACCACTGAGTTAAGACC 60.615 52.174 0.00 0.00 41.82 3.85
2077 2188 2.897969 TCTGACCACTGAGTTAAGACCC 59.102 50.000 0.00 0.00 0.00 4.46
2078 2189 1.975680 TGACCACTGAGTTAAGACCCC 59.024 52.381 0.00 0.00 0.00 4.95
2079 2190 1.975680 GACCACTGAGTTAAGACCCCA 59.024 52.381 0.00 0.00 0.00 4.96
2080 2191 2.572104 GACCACTGAGTTAAGACCCCAT 59.428 50.000 0.00 0.00 0.00 4.00
2081 2192 2.572104 ACCACTGAGTTAAGACCCCATC 59.428 50.000 0.00 0.00 0.00 3.51
2082 2193 2.092914 CCACTGAGTTAAGACCCCATCC 60.093 54.545 0.00 0.00 0.00 3.51
2083 2194 2.571653 CACTGAGTTAAGACCCCATCCA 59.428 50.000 0.00 0.00 0.00 3.41
2084 2195 2.572104 ACTGAGTTAAGACCCCATCCAC 59.428 50.000 0.00 0.00 0.00 4.02
2085 2196 1.553248 TGAGTTAAGACCCCATCCACG 59.447 52.381 0.00 0.00 0.00 4.94
2086 2197 0.252197 AGTTAAGACCCCATCCACGC 59.748 55.000 0.00 0.00 0.00 5.34
2087 2198 0.035820 GTTAAGACCCCATCCACGCA 60.036 55.000 0.00 0.00 0.00 5.24
2088 2199 0.916086 TTAAGACCCCATCCACGCAT 59.084 50.000 0.00 0.00 0.00 4.73
2089 2200 0.916086 TAAGACCCCATCCACGCATT 59.084 50.000 0.00 0.00 0.00 3.56
2090 2201 0.680921 AAGACCCCATCCACGCATTG 60.681 55.000 0.00 0.00 0.00 2.82
2092 2203 2.044053 CCCCATCCACGCATTGGT 60.044 61.111 1.37 0.00 46.97 3.67
2093 2204 2.417257 CCCCATCCACGCATTGGTG 61.417 63.158 1.37 0.49 46.97 4.17
2094 2205 1.678635 CCCATCCACGCATTGGTGT 60.679 57.895 1.37 0.00 46.97 4.16
2100 2211 2.280797 ACGCATTGGTGTGCTCGT 60.281 55.556 0.00 0.00 42.88 4.18
2101 2212 2.174107 CGCATTGGTGTGCTCGTG 59.826 61.111 0.00 0.00 42.88 4.35
2102 2213 2.562912 GCATTGGTGTGCTCGTGG 59.437 61.111 0.00 0.00 41.82 4.94
2103 2214 2.981560 GCATTGGTGTGCTCGTGGG 61.982 63.158 0.00 0.00 41.82 4.61
2104 2215 2.672996 ATTGGTGTGCTCGTGGGC 60.673 61.111 0.00 0.00 0.00 5.36
2133 2244 3.840124 GGAACCCTAACCTACATCCTG 57.160 52.381 0.00 0.00 0.00 3.86
2134 2245 2.438392 GGAACCCTAACCTACATCCTGG 59.562 54.545 0.00 0.00 0.00 4.45
2135 2246 2.191981 ACCCTAACCTACATCCTGGG 57.808 55.000 0.00 0.00 39.06 4.45
2136 2247 1.345112 ACCCTAACCTACATCCTGGGG 60.345 57.143 0.00 0.00 37.56 4.96
2137 2248 0.765510 CCTAACCTACATCCTGGGGC 59.234 60.000 0.00 0.00 0.00 5.80
2138 2249 0.765510 CTAACCTACATCCTGGGGCC 59.234 60.000 0.00 0.00 0.00 5.80
2139 2250 1.052124 TAACCTACATCCTGGGGCCG 61.052 60.000 0.00 0.00 0.00 6.13
2140 2251 4.256180 CCTACATCCTGGGGCCGC 62.256 72.222 14.01 14.01 0.00 6.53
2141 2252 4.256180 CTACATCCTGGGGCCGCC 62.256 72.222 18.45 10.45 0.00 6.13
2142 2253 4.815973 TACATCCTGGGGCCGCCT 62.816 66.667 18.45 0.00 0.00 5.52
2148 2259 3.946201 CTGGGGCCGCCTCCTATG 61.946 72.222 18.45 0.00 0.00 2.23
2153 2264 4.321966 GCCGCCTCCTATGCCCTC 62.322 72.222 0.00 0.00 0.00 4.30
2154 2265 3.631046 CCGCCTCCTATGCCCTCC 61.631 72.222 0.00 0.00 0.00 4.30
2155 2266 3.631046 CGCCTCCTATGCCCTCCC 61.631 72.222 0.00 0.00 0.00 4.30
2156 2267 2.122189 GCCTCCTATGCCCTCCCT 60.122 66.667 0.00 0.00 0.00 4.20
2157 2268 1.772156 GCCTCCTATGCCCTCCCTT 60.772 63.158 0.00 0.00 0.00 3.95
2158 2269 1.773856 GCCTCCTATGCCCTCCCTTC 61.774 65.000 0.00 0.00 0.00 3.46
2159 2270 1.130678 CCTCCTATGCCCTCCCTTCC 61.131 65.000 0.00 0.00 0.00 3.46
2160 2271 1.073706 TCCTATGCCCTCCCTTCCC 60.074 63.158 0.00 0.00 0.00 3.97
2161 2272 2.156774 CCTATGCCCTCCCTTCCCC 61.157 68.421 0.00 0.00 0.00 4.81
2162 2273 1.073397 CTATGCCCTCCCTTCCCCT 60.073 63.158 0.00 0.00 0.00 4.79
2163 2274 1.073706 TATGCCCTCCCTTCCCCTC 60.074 63.158 0.00 0.00 0.00 4.30
2164 2275 2.965226 TATGCCCTCCCTTCCCCTCG 62.965 65.000 0.00 0.00 0.00 4.63
2171 2282 4.452733 CCTTCCCCTCGCCGTCAC 62.453 72.222 0.00 0.00 0.00 3.67
2172 2283 4.452733 CTTCCCCTCGCCGTCACC 62.453 72.222 0.00 0.00 0.00 4.02
2176 2287 3.691342 CCCTCGCCGTCACCAGAA 61.691 66.667 0.00 0.00 0.00 3.02
2177 2288 2.125912 CCTCGCCGTCACCAGAAG 60.126 66.667 0.00 0.00 0.00 2.85
2178 2289 2.125912 CTCGCCGTCACCAGAAGG 60.126 66.667 0.00 0.00 45.04 3.46
2232 2343 3.151022 CGGGGCCTCTCACTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
2233 2344 3.151022 GGGGCCTCTCACTCCTCG 61.151 72.222 0.84 0.00 0.00 4.63
2234 2345 3.844090 GGGCCTCTCACTCCTCGC 61.844 72.222 0.84 0.00 0.00 5.03
2235 2346 3.071206 GGCCTCTCACTCCTCGCA 61.071 66.667 0.00 0.00 0.00 5.10
2236 2347 2.493973 GCCTCTCACTCCTCGCAG 59.506 66.667 0.00 0.00 0.00 5.18
2237 2348 2.493973 CCTCTCACTCCTCGCAGC 59.506 66.667 0.00 0.00 0.00 5.25
2238 2349 2.101965 CTCTCACTCCTCGCAGCG 59.898 66.667 9.06 9.06 0.00 5.18
2239 2350 4.121669 TCTCACTCCTCGCAGCGC 62.122 66.667 10.87 0.00 0.00 5.92
2240 2351 4.426112 CTCACTCCTCGCAGCGCA 62.426 66.667 10.87 0.00 0.00 6.09
2241 2352 3.713205 CTCACTCCTCGCAGCGCAT 62.713 63.158 10.87 0.00 0.00 4.73
2242 2353 3.561213 CACTCCTCGCAGCGCATG 61.561 66.667 10.87 6.31 0.00 4.06
2243 2354 4.827087 ACTCCTCGCAGCGCATGG 62.827 66.667 10.87 12.21 0.00 3.66
2298 2409 3.357079 GCGGACAGCCAGGTTGTG 61.357 66.667 14.71 1.28 40.81 3.33
2306 2417 2.272146 CCAGGTTGTGGCGGCTAT 59.728 61.111 11.43 0.00 40.39 2.97
2307 2418 2.114670 CCAGGTTGTGGCGGCTATG 61.115 63.158 11.43 0.00 40.39 2.23
2308 2419 2.438434 AGGTTGTGGCGGCTATGC 60.438 61.111 11.43 0.00 0.00 3.14
2309 2420 3.876198 GGTTGTGGCGGCTATGCG 61.876 66.667 11.43 0.00 35.06 4.73
2310 2421 3.124921 GTTGTGGCGGCTATGCGT 61.125 61.111 11.43 0.00 35.06 5.24
2311 2422 3.124270 TTGTGGCGGCTATGCGTG 61.124 61.111 11.43 0.00 35.06 5.34
2317 2428 3.202001 CGGCTATGCGTGGGGTTG 61.202 66.667 0.00 0.00 0.00 3.77
2318 2429 2.828549 GGCTATGCGTGGGGTTGG 60.829 66.667 0.00 0.00 0.00 3.77
2319 2430 2.045340 GCTATGCGTGGGGTTGGT 60.045 61.111 0.00 0.00 0.00 3.67
2320 2431 1.677633 GCTATGCGTGGGGTTGGTT 60.678 57.895 0.00 0.00 0.00 3.67
2321 2432 1.248101 GCTATGCGTGGGGTTGGTTT 61.248 55.000 0.00 0.00 0.00 3.27
2322 2433 0.808755 CTATGCGTGGGGTTGGTTTC 59.191 55.000 0.00 0.00 0.00 2.78
2323 2434 0.956410 TATGCGTGGGGTTGGTTTCG 60.956 55.000 0.00 0.00 0.00 3.46
2324 2435 3.666253 GCGTGGGGTTGGTTTCGG 61.666 66.667 0.00 0.00 0.00 4.30
2325 2436 2.981350 CGTGGGGTTGGTTTCGGG 60.981 66.667 0.00 0.00 0.00 5.14
2326 2437 2.599281 GTGGGGTTGGTTTCGGGG 60.599 66.667 0.00 0.00 0.00 5.73
2327 2438 4.607025 TGGGGTTGGTTTCGGGGC 62.607 66.667 0.00 0.00 0.00 5.80
2347 2458 4.592192 CGACGCGGGCATGGATCT 62.592 66.667 12.47 0.00 0.00 2.75
2348 2459 2.734591 GACGCGGGCATGGATCTA 59.265 61.111 12.47 0.00 0.00 1.98
2349 2460 1.373497 GACGCGGGCATGGATCTAG 60.373 63.158 12.47 0.00 0.00 2.43
2350 2461 2.740055 CGCGGGCATGGATCTAGC 60.740 66.667 0.00 0.00 0.00 3.42
2351 2462 2.740055 GCGGGCATGGATCTAGCG 60.740 66.667 0.00 0.00 0.00 4.26
2352 2463 2.740055 CGGGCATGGATCTAGCGC 60.740 66.667 0.00 0.00 37.79 5.92
2353 2464 2.740055 GGGCATGGATCTAGCGCG 60.740 66.667 0.00 0.00 0.00 6.86
2354 2465 2.340078 GGCATGGATCTAGCGCGA 59.660 61.111 12.10 0.00 0.00 5.87
2355 2466 1.300931 GGCATGGATCTAGCGCGAA 60.301 57.895 12.10 0.00 0.00 4.70
2356 2467 0.671781 GGCATGGATCTAGCGCGAAT 60.672 55.000 12.10 0.00 0.00 3.34
2357 2468 0.718343 GCATGGATCTAGCGCGAATC 59.282 55.000 12.10 6.48 0.00 2.52
2358 2469 1.671261 GCATGGATCTAGCGCGAATCT 60.671 52.381 12.10 0.00 0.00 2.40
2359 2470 1.991264 CATGGATCTAGCGCGAATCTG 59.009 52.381 12.10 6.96 0.00 2.90
2360 2471 0.315251 TGGATCTAGCGCGAATCTGG 59.685 55.000 12.10 0.00 0.00 3.86
2361 2472 0.315568 GGATCTAGCGCGAATCTGGT 59.684 55.000 12.10 0.00 0.00 4.00
2362 2473 1.667467 GGATCTAGCGCGAATCTGGTC 60.667 57.143 12.10 0.00 0.00 4.02
2363 2474 0.315568 ATCTAGCGCGAATCTGGTCC 59.684 55.000 12.10 0.00 0.00 4.46
2364 2475 0.752009 TCTAGCGCGAATCTGGTCCT 60.752 55.000 12.10 0.00 0.00 3.85
2365 2476 0.596083 CTAGCGCGAATCTGGTCCTG 60.596 60.000 12.10 0.00 0.00 3.86
2366 2477 2.629050 TAGCGCGAATCTGGTCCTGC 62.629 60.000 12.10 0.00 0.00 4.85
2367 2478 3.257561 CGCGAATCTGGTCCTGCG 61.258 66.667 0.00 0.00 39.57 5.18
2368 2479 2.892425 GCGAATCTGGTCCTGCGG 60.892 66.667 0.00 0.00 0.00 5.69
2369 2480 2.202932 CGAATCTGGTCCTGCGGG 60.203 66.667 4.71 4.71 0.00 6.13
2370 2481 2.514824 GAATCTGGTCCTGCGGGC 60.515 66.667 6.73 1.54 0.00 6.13
2371 2482 4.473520 AATCTGGTCCTGCGGGCG 62.474 66.667 6.73 0.00 0.00 6.13
2396 2507 3.462678 GGCCTCCCCGAGTCAGTC 61.463 72.222 0.00 0.00 0.00 3.51
2397 2508 2.680352 GCCTCCCCGAGTCAGTCA 60.680 66.667 0.00 0.00 0.00 3.41
2398 2509 2.716017 GCCTCCCCGAGTCAGTCAG 61.716 68.421 0.00 0.00 0.00 3.51
2399 2510 2.716017 CCTCCCCGAGTCAGTCAGC 61.716 68.421 0.00 0.00 0.00 4.26
2400 2511 3.057547 CTCCCCGAGTCAGTCAGCG 62.058 68.421 0.00 0.00 0.00 5.18
2401 2512 4.135153 CCCCGAGTCAGTCAGCGG 62.135 72.222 0.00 0.00 43.20 5.52
2403 2514 3.374402 CCGAGTCAGTCAGCGGGT 61.374 66.667 0.00 0.00 40.08 5.28
2404 2515 2.179517 CGAGTCAGTCAGCGGGTC 59.820 66.667 0.00 0.00 0.00 4.46
2405 2516 2.336478 CGAGTCAGTCAGCGGGTCT 61.336 63.158 0.00 0.00 0.00 3.85
2406 2517 1.509004 GAGTCAGTCAGCGGGTCTC 59.491 63.158 0.00 0.00 0.00 3.36
2407 2518 0.963355 GAGTCAGTCAGCGGGTCTCT 60.963 60.000 0.00 0.00 0.00 3.10
2408 2519 0.328592 AGTCAGTCAGCGGGTCTCTA 59.671 55.000 0.00 0.00 0.00 2.43
2409 2520 1.064314 AGTCAGTCAGCGGGTCTCTAT 60.064 52.381 0.00 0.00 0.00 1.98
2410 2521 2.172930 AGTCAGTCAGCGGGTCTCTATA 59.827 50.000 0.00 0.00 0.00 1.31
2411 2522 3.150767 GTCAGTCAGCGGGTCTCTATAT 58.849 50.000 0.00 0.00 0.00 0.86
2412 2523 3.570550 GTCAGTCAGCGGGTCTCTATATT 59.429 47.826 0.00 0.00 0.00 1.28
2413 2524 3.570125 TCAGTCAGCGGGTCTCTATATTG 59.430 47.826 0.00 0.00 0.00 1.90
2414 2525 2.894126 AGTCAGCGGGTCTCTATATTGG 59.106 50.000 0.00 0.00 0.00 3.16
2415 2526 2.028930 GTCAGCGGGTCTCTATATTGGG 60.029 54.545 0.00 0.00 0.00 4.12
2416 2527 1.276421 CAGCGGGTCTCTATATTGGGG 59.724 57.143 0.00 0.00 0.00 4.96
2417 2528 0.036294 GCGGGTCTCTATATTGGGGC 60.036 60.000 0.00 0.00 0.00 5.80
2418 2529 1.645710 CGGGTCTCTATATTGGGGCT 58.354 55.000 0.00 0.00 0.00 5.19
2419 2530 1.978580 CGGGTCTCTATATTGGGGCTT 59.021 52.381 0.00 0.00 0.00 4.35
2420 2531 2.028020 CGGGTCTCTATATTGGGGCTTC 60.028 54.545 0.00 0.00 0.00 3.86
2421 2532 3.252351 GGGTCTCTATATTGGGGCTTCT 58.748 50.000 0.00 0.00 0.00 2.85
2422 2533 3.262151 GGGTCTCTATATTGGGGCTTCTC 59.738 52.174 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 153 5.556915 TGGACGGAGACACAAATATTTTCT 58.443 37.500 0.00 0.00 0.00 2.52
233 234 4.800471 CGTACTCCCACCGTAAAGAAATAC 59.200 45.833 0.00 0.00 0.00 1.89
234 235 4.462483 ACGTACTCCCACCGTAAAGAAATA 59.538 41.667 0.00 0.00 32.22 1.40
235 236 3.259123 ACGTACTCCCACCGTAAAGAAAT 59.741 43.478 0.00 0.00 32.22 2.17
245 246 2.426842 AGGTAGTACGTACTCCCACC 57.573 55.000 31.61 29.61 35.01 4.61
293 294 1.886542 GTTGGTCTTCCCGCTTTGATT 59.113 47.619 0.00 0.00 35.15 2.57
345 362 8.977267 ACGTACTCTTCATAAATAGTACTCCT 57.023 34.615 0.00 0.00 40.38 3.69
352 369 7.378995 GCCACTGTACGTACTCTTCATAAATAG 59.621 40.741 25.12 12.39 0.00 1.73
355 372 5.184479 AGCCACTGTACGTACTCTTCATAAA 59.816 40.000 25.12 2.07 0.00 1.40
375 396 2.597340 GCTAGGATTGGCCAGCCA 59.403 61.111 23.90 7.43 45.63 4.75
408 429 1.535204 AAAAATCTGCCACGCCCAGG 61.535 55.000 0.00 0.00 0.00 4.45
413 434 0.179174 CCGGTAAAAATCTGCCACGC 60.179 55.000 0.00 0.00 0.00 5.34
415 436 1.471287 GTCCCGGTAAAAATCTGCCAC 59.529 52.381 0.00 0.00 0.00 5.01
461 482 1.835121 GTGTTCCGTTTTCAGTTGCC 58.165 50.000 0.00 0.00 0.00 4.52
486 507 7.624360 ACTCGATGCCATTTTGTTTTATCTA 57.376 32.000 0.00 0.00 0.00 1.98
490 511 6.653320 ACTCTACTCGATGCCATTTTGTTTTA 59.347 34.615 0.00 0.00 0.00 1.52
524 546 4.521639 ACATCACTGTACGTACTCTTCCAA 59.478 41.667 25.12 3.52 32.49 3.53
781 815 1.133792 GGGTGAGAGAGAGAGAGAGGG 60.134 61.905 0.00 0.00 0.00 4.30
786 820 0.998928 AGCTGGGTGAGAGAGAGAGA 59.001 55.000 0.00 0.00 0.00 3.10
787 821 1.392589 GAGCTGGGTGAGAGAGAGAG 58.607 60.000 0.00 0.00 0.00 3.20
788 822 0.393673 CGAGCTGGGTGAGAGAGAGA 60.394 60.000 0.00 0.00 0.00 3.10
845 879 3.273434 CACTCTCTCTCTCTGTCTCTGG 58.727 54.545 0.00 0.00 0.00 3.86
865 899 0.744057 CTCCAGCACACACACACACA 60.744 55.000 0.00 0.00 0.00 3.72
867 901 1.819208 GCTCCAGCACACACACACA 60.819 57.895 0.00 0.00 41.59 3.72
869 903 1.096967 CAAGCTCCAGCACACACACA 61.097 55.000 0.48 0.00 45.16 3.72
907 941 2.174685 TCAGCCTATCTGCCCTTGTA 57.825 50.000 0.00 0.00 42.56 2.41
908 942 1.419387 GATCAGCCTATCTGCCCTTGT 59.581 52.381 0.00 0.00 42.56 3.16
919 959 2.502492 GCCTCTGCCGATCAGCCTA 61.502 63.158 0.00 0.00 42.56 3.93
920 960 3.859414 GCCTCTGCCGATCAGCCT 61.859 66.667 0.00 0.00 42.56 4.58
953 993 4.310769 GAGTGTGAAGATTGTAGTGCTGT 58.689 43.478 0.00 0.00 0.00 4.40
1127 1180 0.382873 TCGTCCACGATGATAACGGG 59.617 55.000 0.00 0.00 44.22 5.28
1165 1218 3.053842 AGACCTGCAACTCATGGATGAAT 60.054 43.478 0.00 0.00 36.18 2.57
1212 1265 2.136191 GTCGTCGTACTCGCACGTG 61.136 63.158 12.28 12.28 42.51 4.49
1521 1574 5.702670 GGTTGCTGCTTTCATATCATAGCTA 59.297 40.000 0.00 0.00 34.77 3.32
1599 1664 3.770263 TTACAGCTCGCAATACGTACT 57.230 42.857 0.00 0.00 44.19 2.73
1640 1705 5.657474 TGGATCGGTTTACTACATCAAGAC 58.343 41.667 0.00 0.00 0.00 3.01
1642 1707 6.049149 ACATGGATCGGTTTACTACATCAAG 58.951 40.000 0.00 0.00 0.00 3.02
1725 1794 9.206870 CAAATTGACAACCAAATTACTAGCATT 57.793 29.630 0.00 0.00 38.43 3.56
1746 1815 5.114081 GCATAGCATTGCTCCTTTCAAATT 58.886 37.500 15.81 0.00 40.44 1.82
1747 1816 4.690122 GCATAGCATTGCTCCTTTCAAAT 58.310 39.130 15.81 0.00 40.44 2.32
1748 1817 3.427909 CGCATAGCATTGCTCCTTTCAAA 60.428 43.478 15.81 0.00 40.44 2.69
1749 1818 2.097954 CGCATAGCATTGCTCCTTTCAA 59.902 45.455 15.81 0.00 40.44 2.69
1750 1819 1.672363 CGCATAGCATTGCTCCTTTCA 59.328 47.619 15.81 0.00 40.44 2.69
1751 1820 1.002033 CCGCATAGCATTGCTCCTTTC 60.002 52.381 15.81 0.74 40.44 2.62
1752 1821 1.027357 CCGCATAGCATTGCTCCTTT 58.973 50.000 15.81 0.00 40.44 3.11
1753 1822 0.181114 TCCGCATAGCATTGCTCCTT 59.819 50.000 15.81 0.00 40.44 3.36
1754 1823 0.533755 GTCCGCATAGCATTGCTCCT 60.534 55.000 15.81 0.74 40.44 3.69
1755 1824 1.835483 CGTCCGCATAGCATTGCTCC 61.835 60.000 15.81 4.22 40.44 4.70
1756 1825 0.875908 TCGTCCGCATAGCATTGCTC 60.876 55.000 15.81 0.00 40.44 4.26
1757 1826 1.143838 TCGTCCGCATAGCATTGCT 59.856 52.632 16.63 16.63 43.41 3.91
1758 1827 1.276844 GTCGTCCGCATAGCATTGC 59.723 57.895 0.00 0.00 39.29 3.56
1759 1828 1.006086 TTGTCGTCCGCATAGCATTG 58.994 50.000 0.00 0.00 0.00 2.82
1760 1829 1.006832 GTTGTCGTCCGCATAGCATT 58.993 50.000 0.00 0.00 0.00 3.56
1761 1830 0.175760 AGTTGTCGTCCGCATAGCAT 59.824 50.000 0.00 0.00 0.00 3.79
1762 1831 0.037697 AAGTTGTCGTCCGCATAGCA 60.038 50.000 0.00 0.00 0.00 3.49
1763 1832 1.076332 AAAGTTGTCGTCCGCATAGC 58.924 50.000 0.00 0.00 0.00 2.97
1764 1833 2.159707 CCAAAAGTTGTCGTCCGCATAG 60.160 50.000 0.00 0.00 0.00 2.23
1765 1834 1.801771 CCAAAAGTTGTCGTCCGCATA 59.198 47.619 0.00 0.00 0.00 3.14
1766 1835 0.591170 CCAAAAGTTGTCGTCCGCAT 59.409 50.000 0.00 0.00 0.00 4.73
1767 1836 0.462225 TCCAAAAGTTGTCGTCCGCA 60.462 50.000 0.00 0.00 0.00 5.69
1768 1837 0.041576 GTCCAAAAGTTGTCGTCCGC 60.042 55.000 0.00 0.00 0.00 5.54
1769 1838 0.231279 CGTCCAAAAGTTGTCGTCCG 59.769 55.000 0.00 0.00 0.00 4.79
1770 1839 1.574134 TCGTCCAAAAGTTGTCGTCC 58.426 50.000 0.00 0.00 0.00 4.79
1771 1840 3.872560 AATCGTCCAAAAGTTGTCGTC 57.127 42.857 0.00 0.00 0.00 4.20
1772 1841 3.790789 GCAAATCGTCCAAAAGTTGTCGT 60.791 43.478 0.00 0.00 0.00 4.34
1773 1842 2.719046 GCAAATCGTCCAAAAGTTGTCG 59.281 45.455 0.00 0.00 0.00 4.35
1774 1843 3.701241 TGCAAATCGTCCAAAAGTTGTC 58.299 40.909 0.00 0.00 0.00 3.18
1775 1844 3.380004 TCTGCAAATCGTCCAAAAGTTGT 59.620 39.130 0.00 0.00 0.00 3.32
1776 1845 3.730715 GTCTGCAAATCGTCCAAAAGTTG 59.269 43.478 0.00 0.00 0.00 3.16
1777 1846 3.548014 CGTCTGCAAATCGTCCAAAAGTT 60.548 43.478 0.00 0.00 0.00 2.66
1778 1847 2.032030 CGTCTGCAAATCGTCCAAAAGT 60.032 45.455 0.00 0.00 0.00 2.66
1779 1848 2.223144 TCGTCTGCAAATCGTCCAAAAG 59.777 45.455 0.00 0.00 0.00 2.27
1780 1849 2.032377 GTCGTCTGCAAATCGTCCAAAA 60.032 45.455 0.00 0.00 0.00 2.44
1781 1850 1.529438 GTCGTCTGCAAATCGTCCAAA 59.471 47.619 0.00 0.00 0.00 3.28
1782 1851 1.144969 GTCGTCTGCAAATCGTCCAA 58.855 50.000 0.00 0.00 0.00 3.53
1783 1852 1.006825 CGTCGTCTGCAAATCGTCCA 61.007 55.000 0.00 0.00 0.00 4.02
1784 1853 0.731514 TCGTCGTCTGCAAATCGTCC 60.732 55.000 0.00 0.00 0.00 4.79
1785 1854 1.253034 GATCGTCGTCTGCAAATCGTC 59.747 52.381 0.00 0.00 0.00 4.20
1786 1855 1.269166 GATCGTCGTCTGCAAATCGT 58.731 50.000 0.00 0.00 0.00 3.73
1787 1856 0.224746 CGATCGTCGTCTGCAAATCG 59.775 55.000 7.03 0.00 34.72 3.34
1788 1857 1.545759 TCGATCGTCGTCTGCAAATC 58.454 50.000 15.94 0.00 41.35 2.17
1789 1858 1.990799 TTCGATCGTCGTCTGCAAAT 58.009 45.000 15.94 0.00 41.35 2.32
1790 1859 1.917955 GATTCGATCGTCGTCTGCAAA 59.082 47.619 15.94 0.00 41.35 3.68
1791 1860 1.545759 GATTCGATCGTCGTCTGCAA 58.454 50.000 15.94 0.00 41.35 4.08
1792 1861 0.248498 GGATTCGATCGTCGTCTGCA 60.248 55.000 15.94 0.00 41.35 4.41
1793 1862 0.248498 TGGATTCGATCGTCGTCTGC 60.248 55.000 15.94 2.76 41.35 4.26
1794 1863 1.747956 CTGGATTCGATCGTCGTCTG 58.252 55.000 15.94 4.70 41.35 3.51
1795 1864 0.029567 GCTGGATTCGATCGTCGTCT 59.970 55.000 15.94 0.00 41.35 4.18
1796 1865 1.262824 CGCTGGATTCGATCGTCGTC 61.263 60.000 15.94 11.20 41.35 4.20
1797 1866 1.298413 CGCTGGATTCGATCGTCGT 60.298 57.895 15.94 2.03 41.35 4.34
1798 1867 2.011349 CCGCTGGATTCGATCGTCG 61.011 63.158 15.94 8.12 42.10 5.12
1799 1868 0.309922 TACCGCTGGATTCGATCGTC 59.690 55.000 15.94 6.07 0.00 4.20
1800 1869 0.311165 CTACCGCTGGATTCGATCGT 59.689 55.000 15.94 0.00 0.00 3.73
1801 1870 0.387367 CCTACCGCTGGATTCGATCG 60.387 60.000 9.36 9.36 0.00 3.69
1802 1871 0.959553 TCCTACCGCTGGATTCGATC 59.040 55.000 1.50 0.00 0.00 3.69
1803 1872 1.410004 TTCCTACCGCTGGATTCGAT 58.590 50.000 1.50 0.00 33.09 3.59
1804 1873 1.340248 GATTCCTACCGCTGGATTCGA 59.660 52.381 1.50 0.00 33.09 3.71
1805 1874 1.341531 AGATTCCTACCGCTGGATTCG 59.658 52.381 1.50 0.00 38.37 3.34
1806 1875 2.760374 CAGATTCCTACCGCTGGATTC 58.240 52.381 1.50 0.00 35.41 2.52
1807 1876 2.918712 CAGATTCCTACCGCTGGATT 57.081 50.000 1.50 0.00 33.09 3.01
1811 1880 0.105039 GGACCAGATTCCTACCGCTG 59.895 60.000 0.00 0.00 32.24 5.18
1812 1881 0.325296 TGGACCAGATTCCTACCGCT 60.325 55.000 0.00 0.00 36.51 5.52
1813 1882 0.179081 GTGGACCAGATTCCTACCGC 60.179 60.000 0.00 0.00 36.51 5.68
1814 1883 1.191535 TGTGGACCAGATTCCTACCG 58.808 55.000 0.00 0.00 36.51 4.02
1815 1884 3.610911 CTTTGTGGACCAGATTCCTACC 58.389 50.000 0.00 0.00 36.51 3.18
1816 1885 3.263425 TCCTTTGTGGACCAGATTCCTAC 59.737 47.826 0.00 0.00 40.56 3.18
1817 1886 3.519510 CTCCTTTGTGGACCAGATTCCTA 59.480 47.826 0.00 0.00 40.56 2.94
1818 1887 2.307098 CTCCTTTGTGGACCAGATTCCT 59.693 50.000 0.00 0.00 40.56 3.36
1819 1888 2.716217 CTCCTTTGTGGACCAGATTCC 58.284 52.381 0.00 0.00 40.56 3.01
1820 1889 2.087646 GCTCCTTTGTGGACCAGATTC 58.912 52.381 0.00 0.00 40.56 2.52
1821 1890 1.425066 TGCTCCTTTGTGGACCAGATT 59.575 47.619 0.00 0.00 40.56 2.40
1822 1891 1.004044 CTGCTCCTTTGTGGACCAGAT 59.996 52.381 0.00 0.00 46.58 2.90
1823 1892 0.397941 CTGCTCCTTTGTGGACCAGA 59.602 55.000 0.00 0.00 46.58 3.86
1824 1893 1.239968 GCTGCTCCTTTGTGGACCAG 61.240 60.000 0.00 3.38 46.44 4.00
1825 1894 1.228245 GCTGCTCCTTTGTGGACCA 60.228 57.895 0.00 0.00 40.56 4.02
1826 1895 2.328099 CGCTGCTCCTTTGTGGACC 61.328 63.158 0.00 0.00 40.56 4.46
1827 1896 2.328099 CCGCTGCTCCTTTGTGGAC 61.328 63.158 0.00 0.00 40.56 4.02
1828 1897 2.032528 CCGCTGCTCCTTTGTGGA 59.967 61.111 0.00 0.00 43.86 4.02
1829 1898 3.741476 GCCGCTGCTCCTTTGTGG 61.741 66.667 0.00 0.00 37.10 4.17
1830 1899 3.741476 GGCCGCTGCTCCTTTGTG 61.741 66.667 0.00 0.00 37.74 3.33
1842 1911 1.372872 AAAACAATCAAGCGGCCGC 60.373 52.632 42.34 42.34 42.33 6.53
1843 1912 0.318614 ACAAAACAATCAAGCGGCCG 60.319 50.000 24.05 24.05 0.00 6.13
1844 1913 1.418373 GACAAAACAATCAAGCGGCC 58.582 50.000 0.00 0.00 0.00 6.13
1845 1914 1.052287 CGACAAAACAATCAAGCGGC 58.948 50.000 0.00 0.00 0.00 6.53
1846 1915 2.043411 CACGACAAAACAATCAAGCGG 58.957 47.619 0.00 0.00 0.00 5.52
1847 1916 1.447938 GCACGACAAAACAATCAAGCG 59.552 47.619 0.00 0.00 0.00 4.68
1848 1917 2.216263 GTGCACGACAAAACAATCAAGC 59.784 45.455 0.00 0.00 0.00 4.01
1849 1918 3.433709 TGTGCACGACAAAACAATCAAG 58.566 40.909 13.13 0.00 0.00 3.02
1850 1919 3.127721 TCTGTGCACGACAAAACAATCAA 59.872 39.130 13.13 0.00 32.80 2.57
1851 1920 2.680339 TCTGTGCACGACAAAACAATCA 59.320 40.909 13.13 0.00 32.80 2.57
1852 1921 3.332761 TCTGTGCACGACAAAACAATC 57.667 42.857 13.13 0.00 32.80 2.67
1853 1922 3.606846 CGATCTGTGCACGACAAAACAAT 60.607 43.478 13.13 0.00 32.80 2.71
1854 1923 2.286125 CGATCTGTGCACGACAAAACAA 60.286 45.455 13.13 0.00 32.80 2.83
1855 1924 1.260297 CGATCTGTGCACGACAAAACA 59.740 47.619 13.13 0.00 32.80 2.83
1856 1925 1.398451 CCGATCTGTGCACGACAAAAC 60.398 52.381 13.13 0.00 32.80 2.43
1857 1926 0.865111 CCGATCTGTGCACGACAAAA 59.135 50.000 13.13 0.00 32.80 2.44
1858 1927 1.565156 GCCGATCTGTGCACGACAAA 61.565 55.000 13.13 0.00 32.80 2.83
1859 1928 2.027073 GCCGATCTGTGCACGACAA 61.027 57.895 13.13 0.00 32.80 3.18
1860 1929 2.432456 GCCGATCTGTGCACGACA 60.432 61.111 13.13 0.00 0.00 4.35
1861 1930 3.188786 GGCCGATCTGTGCACGAC 61.189 66.667 13.13 2.48 0.00 4.34
1862 1931 3.647649 CTGGCCGATCTGTGCACGA 62.648 63.158 13.13 12.78 0.00 4.35
1863 1932 3.190849 CTGGCCGATCTGTGCACG 61.191 66.667 13.13 7.36 0.00 5.34
1864 1933 2.821366 CCTGGCCGATCTGTGCAC 60.821 66.667 10.75 10.75 0.00 4.57
1865 1934 4.100084 CCCTGGCCGATCTGTGCA 62.100 66.667 0.00 0.00 0.00 4.57
1867 1936 4.100084 TGCCCTGGCCGATCTGTG 62.100 66.667 5.57 0.00 41.09 3.66
1868 1937 4.101448 GTGCCCTGGCCGATCTGT 62.101 66.667 5.57 0.00 41.09 3.41
1869 1938 3.411114 ATGTGCCCTGGCCGATCTG 62.411 63.158 5.57 0.00 41.09 2.90
1870 1939 3.092511 ATGTGCCCTGGCCGATCT 61.093 61.111 5.57 0.00 41.09 2.75
1871 1940 2.592861 GATGTGCCCTGGCCGATC 60.593 66.667 5.57 3.42 41.09 3.69
1872 1941 4.552365 CGATGTGCCCTGGCCGAT 62.552 66.667 5.57 0.00 41.09 4.18
1875 1944 4.722700 ACACGATGTGCCCTGGCC 62.723 66.667 5.57 0.00 41.09 5.36
1876 1945 3.434319 CACACGATGTGCCCTGGC 61.434 66.667 0.00 0.00 41.89 4.85
1884 1953 3.367932 CGAAATTGCTCTACACACGATGT 59.632 43.478 0.00 0.00 46.06 3.06
1885 1954 3.612423 TCGAAATTGCTCTACACACGATG 59.388 43.478 0.00 0.00 0.00 3.84
1886 1955 3.845178 TCGAAATTGCTCTACACACGAT 58.155 40.909 0.00 0.00 0.00 3.73
1887 1956 3.291809 TCGAAATTGCTCTACACACGA 57.708 42.857 0.00 0.00 0.00 4.35
1888 1957 4.584029 AATCGAAATTGCTCTACACACG 57.416 40.909 0.00 0.00 0.00 4.49
1889 1958 5.927030 TCAAATCGAAATTGCTCTACACAC 58.073 37.500 8.91 0.00 0.00 3.82
1890 1959 6.552859 TTCAAATCGAAATTGCTCTACACA 57.447 33.333 8.91 0.00 0.00 3.72
1891 1960 7.078228 ACTTTCAAATCGAAATTGCTCTACAC 58.922 34.615 8.91 0.00 42.69 2.90
1892 1961 7.202016 ACTTTCAAATCGAAATTGCTCTACA 57.798 32.000 8.91 0.00 42.69 2.74
1893 1962 7.803189 TGAACTTTCAAATCGAAATTGCTCTAC 59.197 33.333 8.91 1.98 42.69 2.59
1894 1963 7.870826 TGAACTTTCAAATCGAAATTGCTCTA 58.129 30.769 8.91 0.00 42.69 2.43
1895 1964 6.738114 TGAACTTTCAAATCGAAATTGCTCT 58.262 32.000 8.91 0.00 42.69 4.09
1896 1965 6.991485 TGAACTTTCAAATCGAAATTGCTC 57.009 33.333 8.91 3.05 42.69 4.26
1937 2006 4.567959 GCAGATTTGTGTTTGTTTCTTGCT 59.432 37.500 0.00 0.00 0.00 3.91
1938 2007 4.567959 AGCAGATTTGTGTTTGTTTCTTGC 59.432 37.500 0.00 0.00 0.00 4.01
1939 2008 6.651755 AAGCAGATTTGTGTTTGTTTCTTG 57.348 33.333 0.00 0.00 0.00 3.02
1942 2011 8.816144 TGAAATAAGCAGATTTGTGTTTGTTTC 58.184 29.630 14.59 14.59 43.11 2.78
1968 2037 4.481368 TGGTATTTGTCGACTAGGCATT 57.519 40.909 17.92 0.00 32.63 3.56
1969 2038 4.503296 GGATGGTATTTGTCGACTAGGCAT 60.503 45.833 17.92 2.57 32.63 4.40
1970 2039 3.181469 GGATGGTATTTGTCGACTAGGCA 60.181 47.826 17.92 0.00 0.00 4.75
1971 2040 3.391049 GGATGGTATTTGTCGACTAGGC 58.609 50.000 17.92 3.35 0.00 3.93
1972 2041 3.317149 TCGGATGGTATTTGTCGACTAGG 59.683 47.826 17.92 0.00 0.00 3.02
1975 2044 5.524971 TTATCGGATGGTATTTGTCGACT 57.475 39.130 17.92 0.00 0.00 4.18
1976 2045 5.694910 ACATTATCGGATGGTATTTGTCGAC 59.305 40.000 9.11 9.11 0.00 4.20
1977 2046 5.849510 ACATTATCGGATGGTATTTGTCGA 58.150 37.500 0.00 0.00 0.00 4.20
1978 2047 7.827819 ATACATTATCGGATGGTATTTGTCG 57.172 36.000 0.00 0.00 0.00 4.35
2008 2119 3.979495 CGGATTTGTACCTCGCTACATAC 59.021 47.826 0.00 0.00 0.00 2.39
2012 2123 2.857592 TCGGATTTGTACCTCGCTAC 57.142 50.000 0.00 0.00 0.00 3.58
2017 2128 2.484889 GCTGGATCGGATTTGTACCTC 58.515 52.381 0.00 0.00 0.00 3.85
2022 2133 0.107017 CCTGGCTGGATCGGATTTGT 60.107 55.000 4.05 0.00 38.35 2.83
2023 2134 0.181114 TCCTGGCTGGATCGGATTTG 59.819 55.000 9.30 0.00 40.56 2.32
2024 2135 0.471617 CTCCTGGCTGGATCGGATTT 59.528 55.000 13.94 0.00 45.16 2.17
2025 2136 1.414061 CCTCCTGGCTGGATCGGATT 61.414 60.000 13.94 0.00 45.16 3.01
2026 2137 1.840650 CCTCCTGGCTGGATCGGAT 60.841 63.158 13.94 0.00 45.16 4.18
2027 2138 2.444706 CCTCCTGGCTGGATCGGA 60.445 66.667 13.94 0.00 45.16 4.55
2045 2156 4.767255 GGTCAGAGCGCAGGGGTG 62.767 72.222 11.47 0.00 0.00 4.61
2047 2158 4.767255 GTGGTCAGAGCGCAGGGG 62.767 72.222 11.47 0.00 0.00 4.79
2048 2159 3.699894 AGTGGTCAGAGCGCAGGG 61.700 66.667 11.47 0.00 0.00 4.45
2049 2160 2.433838 CAGTGGTCAGAGCGCAGG 60.434 66.667 11.47 0.00 0.00 4.85
2050 2161 1.445754 CTCAGTGGTCAGAGCGCAG 60.446 63.158 11.47 7.55 0.00 5.18
2051 2162 1.748329 AACTCAGTGGTCAGAGCGCA 61.748 55.000 11.47 0.00 35.28 6.09
2052 2163 0.243907 TAACTCAGTGGTCAGAGCGC 59.756 55.000 0.00 0.00 35.28 5.92
2053 2164 2.229062 TCTTAACTCAGTGGTCAGAGCG 59.771 50.000 0.00 0.00 35.28 5.03
2054 2165 3.580731 GTCTTAACTCAGTGGTCAGAGC 58.419 50.000 0.00 0.00 35.28 4.09
2055 2166 3.056465 GGGTCTTAACTCAGTGGTCAGAG 60.056 52.174 0.00 0.00 37.87 3.35
2056 2167 2.897969 GGGTCTTAACTCAGTGGTCAGA 59.102 50.000 0.00 0.00 0.00 3.27
2057 2168 2.028020 GGGGTCTTAACTCAGTGGTCAG 60.028 54.545 0.00 0.00 0.00 3.51
2058 2169 1.975680 GGGGTCTTAACTCAGTGGTCA 59.024 52.381 0.00 0.00 0.00 4.02
2059 2170 1.975680 TGGGGTCTTAACTCAGTGGTC 59.024 52.381 0.00 0.00 0.00 4.02
2060 2171 2.112279 TGGGGTCTTAACTCAGTGGT 57.888 50.000 0.00 0.00 0.00 4.16
2061 2172 2.092914 GGATGGGGTCTTAACTCAGTGG 60.093 54.545 0.00 0.00 0.00 4.00
2062 2173 2.571653 TGGATGGGGTCTTAACTCAGTG 59.428 50.000 0.00 0.00 0.00 3.66
2063 2174 2.572104 GTGGATGGGGTCTTAACTCAGT 59.428 50.000 0.00 0.00 0.00 3.41
2064 2175 2.418746 CGTGGATGGGGTCTTAACTCAG 60.419 54.545 0.00 0.00 0.00 3.35
2065 2176 1.553248 CGTGGATGGGGTCTTAACTCA 59.447 52.381 0.00 0.00 0.00 3.41
2066 2177 1.742750 GCGTGGATGGGGTCTTAACTC 60.743 57.143 0.00 0.00 0.00 3.01
2067 2178 0.252197 GCGTGGATGGGGTCTTAACT 59.748 55.000 0.00 0.00 0.00 2.24
2068 2179 0.035820 TGCGTGGATGGGGTCTTAAC 60.036 55.000 0.00 0.00 0.00 2.01
2069 2180 0.916086 ATGCGTGGATGGGGTCTTAA 59.084 50.000 0.00 0.00 0.00 1.85
2070 2181 0.916086 AATGCGTGGATGGGGTCTTA 59.084 50.000 0.00 0.00 0.00 2.10
2071 2182 0.680921 CAATGCGTGGATGGGGTCTT 60.681 55.000 0.00 0.00 0.00 3.01
2072 2183 1.077501 CAATGCGTGGATGGGGTCT 60.078 57.895 0.00 0.00 0.00 3.85
2073 2184 3.513225 CAATGCGTGGATGGGGTC 58.487 61.111 0.00 0.00 0.00 4.46
2085 2196 2.562912 CCACGAGCACACCAATGC 59.437 61.111 0.00 0.00 46.50 3.56
2086 2197 2.981560 GCCCACGAGCACACCAATG 61.982 63.158 0.00 0.00 0.00 2.82
2087 2198 2.672996 GCCCACGAGCACACCAAT 60.673 61.111 0.00 0.00 0.00 3.16
2111 2222 1.773052 GGATGTAGGTTAGGGTTCCCC 59.227 57.143 4.02 0.00 45.90 4.81
2112 2223 2.438392 CAGGATGTAGGTTAGGGTTCCC 59.562 54.545 0.00 0.00 0.00 3.97
2113 2224 2.438392 CCAGGATGTAGGTTAGGGTTCC 59.562 54.545 0.00 0.00 0.00 3.62
2114 2225 2.438392 CCCAGGATGTAGGTTAGGGTTC 59.562 54.545 0.00 0.00 0.00 3.62
2115 2226 2.488836 CCCAGGATGTAGGTTAGGGTT 58.511 52.381 0.00 0.00 0.00 4.11
2116 2227 1.345112 CCCCAGGATGTAGGTTAGGGT 60.345 57.143 0.00 0.00 32.90 4.34
2117 2228 1.435256 CCCCAGGATGTAGGTTAGGG 58.565 60.000 0.00 0.00 34.58 3.53
2118 2229 0.765510 GCCCCAGGATGTAGGTTAGG 59.234 60.000 0.00 0.00 30.77 2.69
2119 2230 0.765510 GGCCCCAGGATGTAGGTTAG 59.234 60.000 0.00 0.00 30.77 2.34
2120 2231 1.052124 CGGCCCCAGGATGTAGGTTA 61.052 60.000 0.00 0.00 30.77 2.85
2121 2232 2.375345 CGGCCCCAGGATGTAGGTT 61.375 63.158 0.00 0.00 30.77 3.50
2122 2233 2.768344 CGGCCCCAGGATGTAGGT 60.768 66.667 0.00 0.00 30.77 3.08
2123 2234 4.256180 GCGGCCCCAGGATGTAGG 62.256 72.222 0.00 0.00 0.00 3.18
2124 2235 4.256180 GGCGGCCCCAGGATGTAG 62.256 72.222 8.12 0.00 0.00 2.74
2125 2236 4.815973 AGGCGGCCCCAGGATGTA 62.816 66.667 17.02 0.00 35.39 2.29
2131 2242 3.946201 CATAGGAGGCGGCCCCAG 61.946 72.222 23.07 12.02 35.39 4.45
2136 2247 4.321966 GAGGGCATAGGAGGCGGC 62.322 72.222 0.00 0.00 34.40 6.53
2137 2248 3.631046 GGAGGGCATAGGAGGCGG 61.631 72.222 0.00 0.00 34.40 6.13
2138 2249 3.631046 GGGAGGGCATAGGAGGCG 61.631 72.222 0.00 0.00 34.40 5.52
2139 2250 1.772156 AAGGGAGGGCATAGGAGGC 60.772 63.158 0.00 0.00 0.00 4.70
2140 2251 1.130678 GGAAGGGAGGGCATAGGAGG 61.131 65.000 0.00 0.00 0.00 4.30
2141 2252 1.130678 GGGAAGGGAGGGCATAGGAG 61.131 65.000 0.00 0.00 0.00 3.69
2142 2253 1.073706 GGGAAGGGAGGGCATAGGA 60.074 63.158 0.00 0.00 0.00 2.94
2143 2254 2.156774 GGGGAAGGGAGGGCATAGG 61.157 68.421 0.00 0.00 0.00 2.57
2144 2255 1.073397 AGGGGAAGGGAGGGCATAG 60.073 63.158 0.00 0.00 0.00 2.23
2145 2256 1.073706 GAGGGGAAGGGAGGGCATA 60.074 63.158 0.00 0.00 0.00 3.14
2146 2257 2.368878 GAGGGGAAGGGAGGGCAT 60.369 66.667 0.00 0.00 0.00 4.40
2154 2265 4.452733 GTGACGGCGAGGGGAAGG 62.453 72.222 16.62 0.00 0.00 3.46
2155 2266 4.452733 GGTGACGGCGAGGGGAAG 62.453 72.222 16.62 0.00 0.00 3.46
2159 2270 3.649277 CTTCTGGTGACGGCGAGGG 62.649 68.421 16.62 0.00 36.33 4.30
2160 2271 2.125912 CTTCTGGTGACGGCGAGG 60.126 66.667 16.62 0.00 36.33 4.63
2161 2272 2.125912 CCTTCTGGTGACGGCGAG 60.126 66.667 16.62 0.00 36.33 5.03
2162 2273 2.915659 ACCTTCTGGTGACGGCGA 60.916 61.111 16.62 0.00 46.51 5.54
2215 2326 3.151022 GAGGAGTGAGAGGCCCCG 61.151 72.222 0.00 0.00 0.00 5.73
2216 2327 3.151022 CGAGGAGTGAGAGGCCCC 61.151 72.222 0.00 0.00 0.00 5.80
2217 2328 3.844090 GCGAGGAGTGAGAGGCCC 61.844 72.222 0.00 0.00 0.00 5.80
2218 2329 3.071206 TGCGAGGAGTGAGAGGCC 61.071 66.667 0.00 0.00 0.00 5.19
2219 2330 2.493973 CTGCGAGGAGTGAGAGGC 59.506 66.667 0.00 0.00 0.00 4.70
2220 2331 2.493973 GCTGCGAGGAGTGAGAGG 59.506 66.667 0.00 0.00 0.00 3.69
2221 2332 2.101965 CGCTGCGAGGAGTGAGAG 59.898 66.667 18.66 0.00 0.00 3.20
2222 2333 4.121669 GCGCTGCGAGGAGTGAGA 62.122 66.667 28.07 0.00 0.00 3.27
2223 2334 3.713205 ATGCGCTGCGAGGAGTGAG 62.713 63.158 28.07 0.00 0.00 3.51
2224 2335 3.763356 ATGCGCTGCGAGGAGTGA 61.763 61.111 28.07 0.00 0.00 3.41
2225 2336 3.561213 CATGCGCTGCGAGGAGTG 61.561 66.667 28.07 11.68 0.00 3.51
2226 2337 4.827087 CCATGCGCTGCGAGGAGT 62.827 66.667 28.07 2.64 0.00 3.85
2278 2389 4.379243 AACCTGGCTGTCCGCTCG 62.379 66.667 0.00 0.00 39.13 5.03
2279 2390 2.743928 CAACCTGGCTGTCCGCTC 60.744 66.667 0.00 0.00 39.13 5.03
2280 2391 3.560251 ACAACCTGGCTGTCCGCT 61.560 61.111 0.00 0.00 39.13 5.52
2281 2392 3.357079 CACAACCTGGCTGTCCGC 61.357 66.667 0.00 0.00 38.13 5.54
2282 2393 2.669569 CCACAACCTGGCTGTCCG 60.670 66.667 0.00 0.00 31.36 4.79
2289 2400 2.114670 CATAGCCGCCACAACCTGG 61.115 63.158 0.00 0.00 44.08 4.45
2290 2401 2.764314 GCATAGCCGCCACAACCTG 61.764 63.158 0.00 0.00 0.00 4.00
2291 2402 2.438434 GCATAGCCGCCACAACCT 60.438 61.111 0.00 0.00 0.00 3.50
2292 2403 3.876198 CGCATAGCCGCCACAACC 61.876 66.667 0.00 0.00 0.00 3.77
2293 2404 3.124921 ACGCATAGCCGCCACAAC 61.125 61.111 0.00 0.00 0.00 3.32
2294 2405 3.124270 CACGCATAGCCGCCACAA 61.124 61.111 0.00 0.00 0.00 3.33
2300 2411 3.202001 CAACCCCACGCATAGCCG 61.202 66.667 0.00 0.00 0.00 5.52
2301 2412 2.828549 CCAACCCCACGCATAGCC 60.829 66.667 0.00 0.00 0.00 3.93
2302 2413 1.248101 AAACCAACCCCACGCATAGC 61.248 55.000 0.00 0.00 0.00 2.97
2303 2414 0.808755 GAAACCAACCCCACGCATAG 59.191 55.000 0.00 0.00 0.00 2.23
2304 2415 0.956410 CGAAACCAACCCCACGCATA 60.956 55.000 0.00 0.00 0.00 3.14
2305 2416 2.265182 CGAAACCAACCCCACGCAT 61.265 57.895 0.00 0.00 0.00 4.73
2306 2417 2.902846 CGAAACCAACCCCACGCA 60.903 61.111 0.00 0.00 0.00 5.24
2307 2418 3.666253 CCGAAACCAACCCCACGC 61.666 66.667 0.00 0.00 0.00 5.34
2308 2419 2.981350 CCCGAAACCAACCCCACG 60.981 66.667 0.00 0.00 0.00 4.94
2309 2420 2.599281 CCCCGAAACCAACCCCAC 60.599 66.667 0.00 0.00 0.00 4.61
2310 2421 4.607025 GCCCCGAAACCAACCCCA 62.607 66.667 0.00 0.00 0.00 4.96
2330 2441 3.207547 TAGATCCATGCCCGCGTCG 62.208 63.158 4.92 0.00 0.00 5.12
2331 2442 1.373497 CTAGATCCATGCCCGCGTC 60.373 63.158 4.92 0.00 0.00 5.19
2332 2443 2.737180 CTAGATCCATGCCCGCGT 59.263 61.111 4.92 0.00 0.00 6.01
2333 2444 2.740055 GCTAGATCCATGCCCGCG 60.740 66.667 0.00 0.00 0.00 6.46
2334 2445 2.740055 CGCTAGATCCATGCCCGC 60.740 66.667 0.00 0.00 0.00 6.13
2335 2446 2.740055 GCGCTAGATCCATGCCCG 60.740 66.667 0.00 0.00 0.00 6.13
2336 2447 2.715532 TTCGCGCTAGATCCATGCCC 62.716 60.000 5.56 0.00 0.00 5.36
2337 2448 0.671781 ATTCGCGCTAGATCCATGCC 60.672 55.000 5.56 0.00 0.00 4.40
2338 2449 0.718343 GATTCGCGCTAGATCCATGC 59.282 55.000 5.56 0.00 0.00 4.06
2339 2450 1.991264 CAGATTCGCGCTAGATCCATG 59.009 52.381 5.56 0.00 0.00 3.66
2340 2451 1.067283 CCAGATTCGCGCTAGATCCAT 60.067 52.381 5.56 0.00 0.00 3.41
2341 2452 0.315251 CCAGATTCGCGCTAGATCCA 59.685 55.000 5.56 0.00 0.00 3.41
2342 2453 0.315568 ACCAGATTCGCGCTAGATCC 59.684 55.000 5.56 0.00 0.00 3.36
2343 2454 1.667467 GGACCAGATTCGCGCTAGATC 60.667 57.143 5.56 6.12 0.00 2.75
2344 2455 0.315568 GGACCAGATTCGCGCTAGAT 59.684 55.000 5.56 0.00 0.00 1.98
2345 2456 0.752009 AGGACCAGATTCGCGCTAGA 60.752 55.000 5.56 0.00 0.00 2.43
2346 2457 0.596083 CAGGACCAGATTCGCGCTAG 60.596 60.000 5.56 0.00 0.00 3.42
2347 2458 1.437573 CAGGACCAGATTCGCGCTA 59.562 57.895 5.56 0.00 0.00 4.26
2348 2459 2.185350 CAGGACCAGATTCGCGCT 59.815 61.111 5.56 0.00 0.00 5.92
2349 2460 3.567797 GCAGGACCAGATTCGCGC 61.568 66.667 0.00 0.00 0.00 6.86
2350 2461 3.257561 CGCAGGACCAGATTCGCG 61.258 66.667 0.00 0.00 36.47 5.87
2379 2490 3.462678 GACTGACTCGGGGAGGCC 61.463 72.222 0.00 0.00 36.76 5.19
2380 2491 2.680352 TGACTGACTCGGGGAGGC 60.680 66.667 0.00 0.00 38.37 4.70
2381 2492 2.716017 GCTGACTGACTCGGGGAGG 61.716 68.421 0.00 0.00 33.35 4.30
2382 2493 2.888863 GCTGACTGACTCGGGGAG 59.111 66.667 0.00 0.00 35.52 4.30
2383 2494 3.062466 CGCTGACTGACTCGGGGA 61.062 66.667 0.00 0.00 40.05 4.81
2384 2495 4.135153 CCGCTGACTGACTCGGGG 62.135 72.222 0.00 0.00 38.35 5.73
2386 2497 3.343788 GACCCGCTGACTGACTCGG 62.344 68.421 0.00 0.00 41.41 4.63
2387 2498 2.179517 GACCCGCTGACTGACTCG 59.820 66.667 0.00 0.00 0.00 4.18
2388 2499 0.963355 AGAGACCCGCTGACTGACTC 60.963 60.000 0.00 0.00 0.00 3.36
2389 2500 0.328592 TAGAGACCCGCTGACTGACT 59.671 55.000 0.00 0.00 0.00 3.41
2390 2501 1.394618 ATAGAGACCCGCTGACTGAC 58.605 55.000 0.00 0.00 0.00 3.51
2391 2502 3.510531 ATATAGAGACCCGCTGACTGA 57.489 47.619 0.00 0.00 0.00 3.41
2392 2503 3.305676 CCAATATAGAGACCCGCTGACTG 60.306 52.174 0.00 0.00 0.00 3.51
2393 2504 2.894126 CCAATATAGAGACCCGCTGACT 59.106 50.000 0.00 0.00 0.00 3.41
2394 2505 2.028930 CCCAATATAGAGACCCGCTGAC 60.029 54.545 0.00 0.00 0.00 3.51
2395 2506 2.248248 CCCAATATAGAGACCCGCTGA 58.752 52.381 0.00 0.00 0.00 4.26
2396 2507 1.276421 CCCCAATATAGAGACCCGCTG 59.724 57.143 0.00 0.00 0.00 5.18
2397 2508 1.645710 CCCCAATATAGAGACCCGCT 58.354 55.000 0.00 0.00 0.00 5.52
2398 2509 0.036294 GCCCCAATATAGAGACCCGC 60.036 60.000 0.00 0.00 0.00 6.13
2399 2510 1.645710 AGCCCCAATATAGAGACCCG 58.354 55.000 0.00 0.00 0.00 5.28
2400 2511 3.252351 AGAAGCCCCAATATAGAGACCC 58.748 50.000 0.00 0.00 0.00 4.46
2401 2512 4.545208 GAGAAGCCCCAATATAGAGACC 57.455 50.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.