Multiple sequence alignment - TraesCS2B01G278300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G278300 chr2B 100.000 2606 0 0 1 2606 384185541 384182936 0.000000e+00 4813.0
1 TraesCS2B01G278300 chr2A 89.767 1847 101 33 789 2606 418972937 418974724 0.000000e+00 2283.0
2 TraesCS2B01G278300 chr2D 95.377 1060 35 9 783 1838 316275461 316274412 0.000000e+00 1674.0
3 TraesCS2B01G278300 chr2D 92.624 705 44 7 1905 2606 316271777 316271078 0.000000e+00 1007.0
4 TraesCS2B01G278300 chr2D 91.496 341 25 4 408 745 42069853 42070192 1.410000e-127 466.0
5 TraesCS2B01G278300 chr1A 91.462 937 59 11 1689 2606 137727674 137728608 0.000000e+00 1267.0
6 TraesCS2B01G278300 chr7D 92.145 331 23 3 421 748 156079525 156079855 5.080000e-127 464.0
7 TraesCS2B01G278300 chr7D 92.355 327 22 3 408 731 201830246 201830572 1.830000e-126 462.0
8 TraesCS2B01G278300 chr7D 90.909 341 27 4 408 745 185552148 185551809 3.060000e-124 455.0
9 TraesCS2B01G278300 chr4D 91.254 343 25 5 406 745 133139554 133139894 1.830000e-126 462.0
10 TraesCS2B01G278300 chr4D 90.909 341 28 3 408 745 60087213 60086873 3.060000e-124 455.0
11 TraesCS2B01G278300 chrUn 91.667 336 22 5 413 745 99417590 99417258 6.570000e-126 460.0
12 TraesCS2B01G278300 chr5B 90.882 340 27 4 408 744 507315663 507315325 1.100000e-123 453.0
13 TraesCS2B01G278300 chr6A 90.435 345 30 3 404 745 74349469 74349813 3.950000e-123 451.0
14 TraesCS2B01G278300 chr7B 77.239 268 50 10 2329 2590 8934998 8934736 2.090000e-31 147.0
15 TraesCS2B01G278300 chr1D 80.508 118 20 3 2343 2459 135391051 135390936 1.280000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G278300 chr2B 384182936 384185541 2605 True 4813.0 4813 100.0000 1 2606 1 chr2B.!!$R1 2605
1 TraesCS2B01G278300 chr2A 418972937 418974724 1787 False 2283.0 2283 89.7670 789 2606 1 chr2A.!!$F1 1817
2 TraesCS2B01G278300 chr2D 316271078 316275461 4383 True 1340.5 1674 94.0005 783 2606 2 chr2D.!!$R1 1823
3 TraesCS2B01G278300 chr1A 137727674 137728608 934 False 1267.0 1267 91.4620 1689 2606 1 chr1A.!!$F1 917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 772 0.031994 GCGAGTGGCCAAACATTGTT 59.968 50.0 7.24 0.0 34.8 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 4726 0.599204 GAAGTGTTTGCGGTCCTCGA 60.599 55.0 0.0 0.0 42.43 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.725556 TGAACACTTCTTGAATACGTGC 57.274 40.909 0.00 0.00 0.00 5.34
30 31 3.496884 TGAACACTTCTTGAATACGTGCC 59.503 43.478 0.00 0.00 0.00 5.01
31 32 2.066262 ACACTTCTTGAATACGTGCCG 58.934 47.619 0.00 0.00 0.00 5.69
32 33 2.288579 ACACTTCTTGAATACGTGCCGA 60.289 45.455 0.00 0.00 0.00 5.54
33 34 2.345641 CACTTCTTGAATACGTGCCGAG 59.654 50.000 0.00 0.00 0.00 4.63
34 35 1.324736 CTTCTTGAATACGTGCCGAGC 59.675 52.381 0.00 0.00 0.00 5.03
35 36 0.245266 TCTTGAATACGTGCCGAGCA 59.755 50.000 0.00 0.00 35.60 4.26
36 37 1.134818 TCTTGAATACGTGCCGAGCAT 60.135 47.619 0.00 0.00 41.91 3.79
37 38 1.665679 CTTGAATACGTGCCGAGCATT 59.334 47.619 0.00 0.00 41.91 3.56
38 39 1.732941 TGAATACGTGCCGAGCATTT 58.267 45.000 0.00 0.00 41.91 2.32
39 40 1.663643 TGAATACGTGCCGAGCATTTC 59.336 47.619 0.00 4.99 41.91 2.17
53 54 6.525121 CGAGCATTTCGGAAGTAATATTGA 57.475 37.500 0.00 0.00 45.54 2.57
54 55 6.943981 CGAGCATTTCGGAAGTAATATTGAA 58.056 36.000 0.00 0.00 45.54 2.69
55 56 6.846283 CGAGCATTTCGGAAGTAATATTGAAC 59.154 38.462 0.00 0.00 45.54 3.18
56 57 7.465379 CGAGCATTTCGGAAGTAATATTGAACA 60.465 37.037 0.00 0.00 45.54 3.18
57 58 8.225603 AGCATTTCGGAAGTAATATTGAACAT 57.774 30.769 0.00 0.00 29.55 2.71
58 59 8.686334 AGCATTTCGGAAGTAATATTGAACATT 58.314 29.630 0.00 0.00 29.55 2.71
59 60 9.301153 GCATTTCGGAAGTAATATTGAACATTT 57.699 29.630 0.00 0.00 29.55 2.32
62 63 8.801882 TTCGGAAGTAATATTGAACATTTCCT 57.198 30.769 0.00 0.00 32.62 3.36
63 64 8.801882 TCGGAAGTAATATTGAACATTTCCTT 57.198 30.769 0.00 0.00 32.62 3.36
64 65 9.238368 TCGGAAGTAATATTGAACATTTCCTTT 57.762 29.630 0.00 0.00 32.62 3.11
75 76 8.954950 TTGAACATTTCCTTTAAAATGCAAGA 57.045 26.923 8.78 0.00 46.09 3.02
76 77 9.558396 TTGAACATTTCCTTTAAAATGCAAGAT 57.442 25.926 8.78 0.00 46.09 2.40
77 78 8.991026 TGAACATTTCCTTTAAAATGCAAGATG 58.009 29.630 8.78 0.00 46.09 2.90
78 79 9.206870 GAACATTTCCTTTAAAATGCAAGATGA 57.793 29.630 8.78 0.00 46.09 2.92
79 80 9.729281 AACATTTCCTTTAAAATGCAAGATGAT 57.271 25.926 8.78 0.00 46.09 2.45
80 81 9.729281 ACATTTCCTTTAAAATGCAAGATGATT 57.271 25.926 8.78 0.00 46.09 2.57
117 118 9.522804 ACGTGATTTACTTTTTCTTAAAATGCA 57.477 25.926 0.00 0.00 33.05 3.96
118 119 9.777843 CGTGATTTACTTTTTCTTAAAATGCAC 57.222 29.630 0.00 0.00 33.05 4.57
123 124 9.862371 TTTACTTTTTCTTAAAATGCACAGACA 57.138 25.926 0.00 0.00 33.05 3.41
124 125 7.755582 ACTTTTTCTTAAAATGCACAGACAC 57.244 32.000 0.00 0.00 33.05 3.67
125 126 7.547227 ACTTTTTCTTAAAATGCACAGACACT 58.453 30.769 0.00 0.00 33.05 3.55
126 127 8.034804 ACTTTTTCTTAAAATGCACAGACACTT 58.965 29.630 0.00 0.00 33.05 3.16
127 128 7.985634 TTTTCTTAAAATGCACAGACACTTC 57.014 32.000 0.00 0.00 0.00 3.01
128 129 6.942532 TTCTTAAAATGCACAGACACTTCT 57.057 33.333 0.00 0.00 0.00 2.85
129 130 8.445275 TTTCTTAAAATGCACAGACACTTCTA 57.555 30.769 0.00 0.00 0.00 2.10
130 131 8.621532 TTCTTAAAATGCACAGACACTTCTAT 57.378 30.769 0.00 0.00 0.00 1.98
131 132 9.719355 TTCTTAAAATGCACAGACACTTCTATA 57.281 29.630 0.00 0.00 0.00 1.31
132 133 9.890629 TCTTAAAATGCACAGACACTTCTATAT 57.109 29.630 0.00 0.00 0.00 0.86
133 134 9.926751 CTTAAAATGCACAGACACTTCTATATG 57.073 33.333 0.00 0.00 0.00 1.78
134 135 9.665719 TTAAAATGCACAGACACTTCTATATGA 57.334 29.630 0.00 0.00 0.00 2.15
135 136 8.565896 AAAATGCACAGACACTTCTATATGAA 57.434 30.769 0.00 0.00 0.00 2.57
136 137 8.565896 AAATGCACAGACACTTCTATATGAAA 57.434 30.769 0.00 0.00 33.79 2.69
137 138 8.743085 AATGCACAGACACTTCTATATGAAAT 57.257 30.769 0.00 0.00 33.79 2.17
138 139 8.743085 ATGCACAGACACTTCTATATGAAATT 57.257 30.769 0.00 0.00 33.79 1.82
139 140 9.836864 ATGCACAGACACTTCTATATGAAATTA 57.163 29.630 0.00 0.00 33.79 1.40
140 141 9.836864 TGCACAGACACTTCTATATGAAATTAT 57.163 29.630 0.00 0.00 33.79 1.28
181 182 9.486497 AATACATGTTTGCAAAATACATCAACA 57.514 25.926 14.67 5.31 30.45 3.33
182 183 7.966246 ACATGTTTGCAAAATACATCAACAT 57.034 28.000 14.67 7.60 30.45 2.71
183 184 8.380743 ACATGTTTGCAAAATACATCAACATT 57.619 26.923 14.67 0.00 30.45 2.71
184 185 8.838365 ACATGTTTGCAAAATACATCAACATTT 58.162 25.926 14.67 0.79 30.45 2.32
185 186 9.666626 CATGTTTGCAAAATACATCAACATTTT 57.333 25.926 14.67 0.00 35.30 1.82
187 188 9.499585 TGTTTGCAAAATACATCAACATTTTTG 57.500 25.926 14.67 0.00 39.23 2.44
188 189 9.500864 GTTTGCAAAATACATCAACATTTTTGT 57.499 25.926 14.67 0.00 38.74 2.83
196 197 9.539825 AATACATCAACATTTTTGTAAAGTGCA 57.460 25.926 0.00 0.00 0.00 4.57
197 198 9.709495 ATACATCAACATTTTTGTAAAGTGCAT 57.291 25.926 0.00 0.00 0.00 3.96
198 199 7.853524 ACATCAACATTTTTGTAAAGTGCATG 58.146 30.769 0.00 0.00 0.00 4.06
199 200 7.710044 ACATCAACATTTTTGTAAAGTGCATGA 59.290 29.630 0.00 0.00 0.00 3.07
200 201 8.714179 CATCAACATTTTTGTAAAGTGCATGAT 58.286 29.630 0.00 0.00 0.00 2.45
201 202 8.659925 TCAACATTTTTGTAAAGTGCATGATT 57.340 26.923 0.00 0.00 0.00 2.57
202 203 9.755804 TCAACATTTTTGTAAAGTGCATGATTA 57.244 25.926 0.00 0.00 0.00 1.75
203 204 9.796062 CAACATTTTTGTAAAGTGCATGATTAC 57.204 29.630 0.00 10.55 0.00 1.89
204 205 8.532977 ACATTTTTGTAAAGTGCATGATTACC 57.467 30.769 0.00 0.00 0.00 2.85
205 206 8.367156 ACATTTTTGTAAAGTGCATGATTACCT 58.633 29.630 0.00 0.00 0.00 3.08
206 207 9.206870 CATTTTTGTAAAGTGCATGATTACCTT 57.793 29.630 0.00 0.00 0.00 3.50
207 208 9.777297 ATTTTTGTAAAGTGCATGATTACCTTT 57.223 25.926 0.00 8.46 0.00 3.11
208 209 9.606631 TTTTTGTAAAGTGCATGATTACCTTTT 57.393 25.926 0.00 0.00 0.00 2.27
209 210 9.606631 TTTTGTAAAGTGCATGATTACCTTTTT 57.393 25.926 0.00 0.00 0.00 1.94
216 217 9.777297 AAGTGCATGATTACCTTTTTAAAATGT 57.223 25.926 0.55 5.31 0.00 2.71
217 218 9.206870 AGTGCATGATTACCTTTTTAAAATGTG 57.793 29.630 0.55 1.95 0.00 3.21
218 219 8.987890 GTGCATGATTACCTTTTTAAAATGTGT 58.012 29.630 0.55 7.18 0.00 3.72
219 220 9.553064 TGCATGATTACCTTTTTAAAATGTGTT 57.447 25.926 0.55 0.00 0.00 3.32
220 221 9.810231 GCATGATTACCTTTTTAAAATGTGTTG 57.190 29.630 0.55 2.16 0.00 3.33
278 279 7.822161 ATACAATATTGAGCACTTTATGGCA 57.178 32.000 22.16 0.00 0.00 4.92
279 280 6.140303 ACAATATTGAGCACTTTATGGCAG 57.860 37.500 22.16 0.00 0.00 4.85
280 281 4.843220 ATATTGAGCACTTTATGGCAGC 57.157 40.909 0.00 0.00 0.00 5.25
281 282 0.804364 TTGAGCACTTTATGGCAGCG 59.196 50.000 0.00 0.00 0.00 5.18
282 283 1.026182 TGAGCACTTTATGGCAGCGG 61.026 55.000 0.00 0.00 0.00 5.52
283 284 2.102946 GCACTTTATGGCAGCGGC 59.897 61.111 0.00 0.00 40.13 6.53
293 294 2.800736 GCAGCGGCCGATTCATTT 59.199 55.556 33.48 0.72 0.00 2.32
294 295 1.139520 GCAGCGGCCGATTCATTTT 59.860 52.632 33.48 0.00 0.00 1.82
295 296 1.141591 GCAGCGGCCGATTCATTTTG 61.142 55.000 33.48 10.28 0.00 2.44
296 297 1.139520 AGCGGCCGATTCATTTTGC 59.860 52.632 33.48 6.57 0.00 3.68
297 298 2.223549 GCGGCCGATTCATTTTGCG 61.224 57.895 33.48 0.00 0.00 4.85
298 299 1.136565 CGGCCGATTCATTTTGCGT 59.863 52.632 24.07 0.00 0.00 5.24
299 300 0.375454 CGGCCGATTCATTTTGCGTA 59.625 50.000 24.07 0.00 0.00 4.42
300 301 1.594518 CGGCCGATTCATTTTGCGTAG 60.595 52.381 24.07 0.00 0.00 3.51
301 302 1.268539 GGCCGATTCATTTTGCGTAGG 60.269 52.381 0.00 0.00 0.00 3.18
302 303 1.859998 GCCGATTCATTTTGCGTAGGC 60.860 52.381 0.00 0.00 40.52 3.93
303 304 1.670811 CCGATTCATTTTGCGTAGGCT 59.329 47.619 9.11 0.00 40.82 4.58
304 305 2.097466 CCGATTCATTTTGCGTAGGCTT 59.903 45.455 9.11 0.00 40.82 4.35
305 306 3.311322 CCGATTCATTTTGCGTAGGCTTA 59.689 43.478 9.11 0.00 40.82 3.09
306 307 4.201871 CCGATTCATTTTGCGTAGGCTTAA 60.202 41.667 9.11 3.36 40.82 1.85
307 308 5.505654 CCGATTCATTTTGCGTAGGCTTAAT 60.506 40.000 9.11 5.51 40.82 1.40
308 309 5.621228 CGATTCATTTTGCGTAGGCTTAATC 59.379 40.000 9.11 7.59 40.82 1.75
309 310 6.511767 CGATTCATTTTGCGTAGGCTTAATCT 60.512 38.462 9.11 0.00 40.82 2.40
310 311 5.734855 TCATTTTGCGTAGGCTTAATCTC 57.265 39.130 9.11 0.00 40.82 2.75
311 312 4.574828 TCATTTTGCGTAGGCTTAATCTCC 59.425 41.667 9.11 0.00 40.82 3.71
312 313 2.218953 TTGCGTAGGCTTAATCTCCG 57.781 50.000 9.11 0.00 40.82 4.63
313 314 0.249322 TGCGTAGGCTTAATCTCCGC 60.249 55.000 9.11 8.32 40.82 5.54
314 315 0.944788 GCGTAGGCTTAATCTCCGCC 60.945 60.000 0.00 0.54 44.09 6.13
317 318 3.719214 GGCTTAATCTCCGCCGTG 58.281 61.111 0.00 0.00 33.64 4.94
318 319 1.887707 GGCTTAATCTCCGCCGTGG 60.888 63.158 0.00 0.00 40.09 4.94
319 320 1.887707 GCTTAATCTCCGCCGTGGG 60.888 63.158 0.00 0.00 38.76 4.61
320 321 1.227556 CTTAATCTCCGCCGTGGGG 60.228 63.158 0.00 0.00 40.98 4.96
339 340 3.575506 CATGACTTGCTAAGGCCCA 57.424 52.632 0.00 0.00 34.86 5.36
340 341 2.062971 CATGACTTGCTAAGGCCCAT 57.937 50.000 0.00 0.00 34.86 4.00
341 342 1.952296 CATGACTTGCTAAGGCCCATC 59.048 52.381 0.00 0.00 34.86 3.51
342 343 1.289160 TGACTTGCTAAGGCCCATCT 58.711 50.000 0.00 0.00 34.86 2.90
343 344 1.065199 TGACTTGCTAAGGCCCATCTG 60.065 52.381 0.00 0.00 34.86 2.90
344 345 1.210478 GACTTGCTAAGGCCCATCTGA 59.790 52.381 0.00 0.00 37.74 3.27
345 346 1.635487 ACTTGCTAAGGCCCATCTGAA 59.365 47.619 0.00 0.00 37.74 3.02
346 347 2.019984 CTTGCTAAGGCCCATCTGAAC 58.980 52.381 0.00 0.00 37.74 3.18
347 348 0.991146 TGCTAAGGCCCATCTGAACA 59.009 50.000 0.00 0.00 37.74 3.18
348 349 1.354031 TGCTAAGGCCCATCTGAACAA 59.646 47.619 0.00 0.00 37.74 2.83
349 350 2.019984 GCTAAGGCCCATCTGAACAAG 58.980 52.381 0.00 0.00 0.00 3.16
350 351 2.019984 CTAAGGCCCATCTGAACAAGC 58.980 52.381 0.00 0.00 0.00 4.01
351 352 0.962356 AAGGCCCATCTGAACAAGCG 60.962 55.000 0.00 0.00 0.00 4.68
352 353 1.675641 GGCCCATCTGAACAAGCGT 60.676 57.895 0.00 0.00 0.00 5.07
353 354 1.244019 GGCCCATCTGAACAAGCGTT 61.244 55.000 0.00 0.00 38.33 4.84
354 355 0.109597 GCCCATCTGAACAAGCGTTG 60.110 55.000 0.00 0.00 34.75 4.10
368 369 2.127758 GTTGTTCGCTCGCAACGG 60.128 61.111 0.00 0.00 36.15 4.44
369 370 3.342627 TTGTTCGCTCGCAACGGG 61.343 61.111 0.00 0.00 0.00 5.28
370 371 3.793775 TTGTTCGCTCGCAACGGGA 62.794 57.895 0.00 0.00 0.00 5.14
371 372 3.774702 GTTCGCTCGCAACGGGAC 61.775 66.667 0.00 0.00 0.00 4.46
374 375 4.124351 CGCTCGCAACGGGACCTA 62.124 66.667 0.00 0.00 0.00 3.08
375 376 2.499685 GCTCGCAACGGGACCTAT 59.500 61.111 0.00 0.00 0.00 2.57
376 377 1.737816 GCTCGCAACGGGACCTATA 59.262 57.895 0.00 0.00 0.00 1.31
377 378 0.103572 GCTCGCAACGGGACCTATAA 59.896 55.000 0.00 0.00 0.00 0.98
378 379 1.472026 GCTCGCAACGGGACCTATAAA 60.472 52.381 0.00 0.00 0.00 1.40
379 380 2.896168 CTCGCAACGGGACCTATAAAA 58.104 47.619 0.00 0.00 0.00 1.52
380 381 3.264104 CTCGCAACGGGACCTATAAAAA 58.736 45.455 0.00 0.00 0.00 1.94
402 403 6.570672 AAAAGCACATCTATCTATGCATGG 57.429 37.500 10.16 6.58 40.63 3.66
403 404 4.217836 AGCACATCTATCTATGCATGGG 57.782 45.455 10.16 2.09 40.63 4.00
404 405 3.842436 AGCACATCTATCTATGCATGGGA 59.158 43.478 10.16 8.05 40.63 4.37
405 406 4.287845 AGCACATCTATCTATGCATGGGAA 59.712 41.667 10.16 0.00 40.63 3.97
406 407 4.634883 GCACATCTATCTATGCATGGGAAG 59.365 45.833 10.16 7.78 38.00 3.46
407 408 5.802465 CACATCTATCTATGCATGGGAAGT 58.198 41.667 10.16 0.00 0.00 3.01
408 409 6.575056 GCACATCTATCTATGCATGGGAAGTA 60.575 42.308 10.16 0.00 38.00 2.24
409 410 7.563020 CACATCTATCTATGCATGGGAAGTAT 58.437 38.462 10.16 0.00 0.00 2.12
410 411 8.699130 CACATCTATCTATGCATGGGAAGTATA 58.301 37.037 10.16 0.00 0.00 1.47
411 412 9.444668 ACATCTATCTATGCATGGGAAGTATAT 57.555 33.333 10.16 0.00 0.00 0.86
412 413 9.926158 CATCTATCTATGCATGGGAAGTATATC 57.074 37.037 10.16 0.00 0.00 1.63
413 414 9.895507 ATCTATCTATGCATGGGAAGTATATCT 57.104 33.333 10.16 0.00 0.00 1.98
414 415 9.140874 TCTATCTATGCATGGGAAGTATATCTG 57.859 37.037 10.16 0.00 0.00 2.90
415 416 6.550938 TCTATGCATGGGAAGTATATCTGG 57.449 41.667 10.16 0.00 0.00 3.86
416 417 3.423539 TGCATGGGAAGTATATCTGGC 57.576 47.619 0.00 0.00 0.00 4.85
417 418 2.040278 TGCATGGGAAGTATATCTGGCC 59.960 50.000 0.00 0.00 0.00 5.36
418 419 2.040278 GCATGGGAAGTATATCTGGCCA 59.960 50.000 4.71 4.71 0.00 5.36
419 420 3.308688 GCATGGGAAGTATATCTGGCCAT 60.309 47.826 5.51 0.00 0.00 4.40
420 421 4.267536 CATGGGAAGTATATCTGGCCATG 58.732 47.826 5.51 0.00 33.39 3.66
421 422 2.644299 TGGGAAGTATATCTGGCCATGG 59.356 50.000 5.51 7.63 0.00 3.66
422 423 2.025887 GGGAAGTATATCTGGCCATGGG 60.026 54.545 15.13 0.00 0.00 4.00
445 446 3.356814 GCTTGGGTCAGGCCTAAAA 57.643 52.632 3.98 0.00 37.27 1.52
446 447 1.627864 GCTTGGGTCAGGCCTAAAAA 58.372 50.000 3.98 0.00 37.27 1.94
467 468 3.369381 CCCACGGCAGATAACTGAG 57.631 57.895 3.85 0.00 46.03 3.35
468 469 0.179073 CCCACGGCAGATAACTGAGG 60.179 60.000 3.85 0.00 46.03 3.86
469 470 0.811616 CCACGGCAGATAACTGAGGC 60.812 60.000 3.85 0.00 46.03 4.70
470 471 0.811616 CACGGCAGATAACTGAGGCC 60.812 60.000 3.85 0.00 46.03 5.19
471 472 1.227674 CGGCAGATAACTGAGGCCC 60.228 63.158 3.85 0.00 46.03 5.80
472 473 1.915228 GGCAGATAACTGAGGCCCA 59.085 57.895 3.85 0.00 46.03 5.36
473 474 0.179034 GGCAGATAACTGAGGCCCAG 60.179 60.000 16.92 16.92 46.03 4.45
474 475 0.833287 GCAGATAACTGAGGCCCAGA 59.167 55.000 23.24 6.65 45.78 3.86
475 476 1.474143 GCAGATAACTGAGGCCCAGAC 60.474 57.143 23.24 13.01 45.78 3.51
476 477 1.139853 CAGATAACTGAGGCCCAGACC 59.860 57.143 23.24 11.28 45.78 3.85
477 478 0.470341 GATAACTGAGGCCCAGACCC 59.530 60.000 23.24 9.03 45.78 4.46
478 479 0.044855 ATAACTGAGGCCCAGACCCT 59.955 55.000 23.24 10.11 45.78 4.34
479 480 0.178873 TAACTGAGGCCCAGACCCTT 60.179 55.000 23.24 12.06 45.78 3.95
480 481 1.492993 AACTGAGGCCCAGACCCTTC 61.493 60.000 23.24 3.05 45.78 3.46
481 482 2.610859 TGAGGCCCAGACCCTTCC 60.611 66.667 0.00 0.00 31.41 3.46
482 483 2.610859 GAGGCCCAGACCCTTCCA 60.611 66.667 0.00 0.00 31.41 3.53
483 484 2.121506 AGGCCCAGACCCTTCCAA 60.122 61.111 0.00 0.00 0.00 3.53
484 485 2.203549 GAGGCCCAGACCCTTCCAAG 62.204 65.000 0.00 0.00 31.41 3.61
485 486 2.361737 GCCCAGACCCTTCCAAGC 60.362 66.667 0.00 0.00 0.00 4.01
486 487 2.356667 CCCAGACCCTTCCAAGCC 59.643 66.667 0.00 0.00 0.00 4.35
487 488 2.356667 CCAGACCCTTCCAAGCCC 59.643 66.667 0.00 0.00 0.00 5.19
488 489 2.538141 CCAGACCCTTCCAAGCCCA 61.538 63.158 0.00 0.00 0.00 5.36
489 490 1.460255 CAGACCCTTCCAAGCCCAA 59.540 57.895 0.00 0.00 0.00 4.12
490 491 0.895559 CAGACCCTTCCAAGCCCAAC 60.896 60.000 0.00 0.00 0.00 3.77
491 492 1.606601 GACCCTTCCAAGCCCAACC 60.607 63.158 0.00 0.00 0.00 3.77
492 493 2.366153 GACCCTTCCAAGCCCAACCA 62.366 60.000 0.00 0.00 0.00 3.67
493 494 1.079073 CCCTTCCAAGCCCAACCAT 59.921 57.895 0.00 0.00 0.00 3.55
494 495 0.334676 CCCTTCCAAGCCCAACCATA 59.665 55.000 0.00 0.00 0.00 2.74
495 496 1.686115 CCCTTCCAAGCCCAACCATAG 60.686 57.143 0.00 0.00 0.00 2.23
496 497 1.686115 CCTTCCAAGCCCAACCATAGG 60.686 57.143 0.00 0.00 0.00 2.57
503 504 2.945718 CCCAACCATAGGGCCTACT 58.054 57.895 17.19 2.37 39.96 2.57
504 505 1.222567 CCCAACCATAGGGCCTACTT 58.777 55.000 17.19 4.76 39.96 2.24
505 506 1.569072 CCCAACCATAGGGCCTACTTT 59.431 52.381 17.19 6.36 39.96 2.66
506 507 2.024369 CCCAACCATAGGGCCTACTTTT 60.024 50.000 17.19 5.98 39.96 2.27
507 508 3.288092 CCAACCATAGGGCCTACTTTTC 58.712 50.000 17.19 0.00 37.90 2.29
508 509 3.308832 CCAACCATAGGGCCTACTTTTCA 60.309 47.826 17.19 0.00 37.90 2.69
509 510 4.340617 CAACCATAGGGCCTACTTTTCAA 58.659 43.478 17.19 0.00 37.90 2.69
510 511 4.236527 ACCATAGGGCCTACTTTTCAAG 57.763 45.455 17.19 1.21 37.90 3.02
511 512 2.952310 CCATAGGGCCTACTTTTCAAGC 59.048 50.000 17.19 0.00 0.00 4.01
512 513 2.801077 TAGGGCCTACTTTTCAAGCC 57.199 50.000 9.81 0.00 43.09 4.35
514 515 3.356814 GGCCTACTTTTCAAGCCCA 57.643 52.632 0.00 0.00 37.66 5.36
515 516 1.627864 GGCCTACTTTTCAAGCCCAA 58.372 50.000 0.00 0.00 37.66 4.12
516 517 1.546029 GGCCTACTTTTCAAGCCCAAG 59.454 52.381 0.00 0.00 37.66 3.61
517 518 1.067565 GCCTACTTTTCAAGCCCAAGC 60.068 52.381 0.00 0.00 40.32 4.01
518 519 1.546029 CCTACTTTTCAAGCCCAAGCC 59.454 52.381 0.00 0.00 41.25 4.35
519 520 1.546029 CTACTTTTCAAGCCCAAGCCC 59.454 52.381 0.00 0.00 41.25 5.19
520 521 1.290009 CTTTTCAAGCCCAAGCCCG 59.710 57.895 0.00 0.00 41.25 6.13
521 522 2.158561 CTTTTCAAGCCCAAGCCCGG 62.159 60.000 0.00 0.00 41.25 5.73
528 529 3.488569 CCCAAGCCCGGCCATCTA 61.489 66.667 5.55 0.00 0.00 1.98
529 530 2.111878 CCAAGCCCGGCCATCTAG 59.888 66.667 5.55 0.00 0.00 2.43
530 531 2.746375 CCAAGCCCGGCCATCTAGT 61.746 63.158 5.55 0.00 0.00 2.57
531 532 1.407656 CCAAGCCCGGCCATCTAGTA 61.408 60.000 5.55 0.00 0.00 1.82
532 533 0.468226 CAAGCCCGGCCATCTAGTAA 59.532 55.000 5.55 0.00 0.00 2.24
533 534 1.134220 CAAGCCCGGCCATCTAGTAAA 60.134 52.381 5.55 0.00 0.00 2.01
534 535 1.209621 AGCCCGGCCATCTAGTAAAA 58.790 50.000 5.55 0.00 0.00 1.52
535 536 1.562475 AGCCCGGCCATCTAGTAAAAA 59.438 47.619 5.55 0.00 0.00 1.94
536 537 1.947456 GCCCGGCCATCTAGTAAAAAG 59.053 52.381 2.24 0.00 0.00 2.27
537 538 1.947456 CCCGGCCATCTAGTAAAAAGC 59.053 52.381 2.24 0.00 0.00 3.51
538 539 1.947456 CCGGCCATCTAGTAAAAAGCC 59.053 52.381 2.24 0.00 35.55 4.35
539 540 1.947456 CGGCCATCTAGTAAAAAGCCC 59.053 52.381 2.24 0.00 35.46 5.19
540 541 2.421529 CGGCCATCTAGTAAAAAGCCCT 60.422 50.000 2.24 0.00 35.46 5.19
541 542 2.952310 GGCCATCTAGTAAAAAGCCCTG 59.048 50.000 0.00 0.00 32.68 4.45
542 543 3.371595 GGCCATCTAGTAAAAAGCCCTGA 60.372 47.826 0.00 0.00 32.68 3.86
543 544 4.270008 GCCATCTAGTAAAAAGCCCTGAA 58.730 43.478 0.00 0.00 0.00 3.02
544 545 4.705023 GCCATCTAGTAAAAAGCCCTGAAA 59.295 41.667 0.00 0.00 0.00 2.69
545 546 5.185056 GCCATCTAGTAAAAAGCCCTGAAAA 59.815 40.000 0.00 0.00 0.00 2.29
546 547 6.625960 GCCATCTAGTAAAAAGCCCTGAAAAG 60.626 42.308 0.00 0.00 0.00 2.27
547 548 5.959618 TCTAGTAAAAAGCCCTGAAAAGC 57.040 39.130 0.00 0.00 0.00 3.51
548 549 4.765339 TCTAGTAAAAAGCCCTGAAAAGCC 59.235 41.667 0.00 0.00 0.00 4.35
549 550 2.632996 AGTAAAAAGCCCTGAAAAGCCC 59.367 45.455 0.00 0.00 0.00 5.19
550 551 1.806496 AAAAAGCCCTGAAAAGCCCT 58.194 45.000 0.00 0.00 0.00 5.19
551 552 1.806496 AAAAGCCCTGAAAAGCCCTT 58.194 45.000 0.00 0.00 0.00 3.95
552 553 2.694616 AAAGCCCTGAAAAGCCCTTA 57.305 45.000 0.00 0.00 0.00 2.69
553 554 2.222227 AAGCCCTGAAAAGCCCTTAG 57.778 50.000 0.00 0.00 0.00 2.18
554 555 1.372501 AGCCCTGAAAAGCCCTTAGA 58.627 50.000 0.00 0.00 0.00 2.10
555 556 1.283321 AGCCCTGAAAAGCCCTTAGAG 59.717 52.381 0.00 0.00 0.00 2.43
556 557 1.756430 CCCTGAAAAGCCCTTAGAGC 58.244 55.000 0.00 0.00 0.00 4.09
557 558 1.283321 CCCTGAAAAGCCCTTAGAGCT 59.717 52.381 0.00 0.00 44.19 4.09
565 566 1.749033 CCCTTAGAGCTTAGGGCCG 59.251 63.158 14.41 0.00 44.40 6.13
566 567 1.049289 CCCTTAGAGCTTAGGGCCGT 61.049 60.000 14.41 2.24 44.40 5.68
567 568 0.831307 CCTTAGAGCTTAGGGCCGTT 59.169 55.000 1.81 0.00 43.05 4.44
568 569 1.202545 CCTTAGAGCTTAGGGCCGTTC 60.203 57.143 1.81 0.00 43.05 3.95
569 570 0.458669 TTAGAGCTTAGGGCCGTTCG 59.541 55.000 1.81 0.00 43.05 3.95
570 571 0.682209 TAGAGCTTAGGGCCGTTCGT 60.682 55.000 1.81 0.00 43.05 3.85
571 572 1.518792 GAGCTTAGGGCCGTTCGTC 60.519 63.158 1.81 0.00 43.05 4.20
572 573 2.884207 GCTTAGGGCCGTTCGTCG 60.884 66.667 1.81 0.00 39.52 5.12
581 582 4.493747 CGTTCGTCGGGCCTCTCC 62.494 72.222 0.84 0.00 35.71 3.71
592 593 1.403814 GGCCTCTCCCTTAAAATGCC 58.596 55.000 0.00 0.00 0.00 4.40
593 594 1.341976 GGCCTCTCCCTTAAAATGCCA 60.342 52.381 0.00 0.00 37.58 4.92
594 595 2.456577 GCCTCTCCCTTAAAATGCCAA 58.543 47.619 0.00 0.00 0.00 4.52
595 596 3.033909 GCCTCTCCCTTAAAATGCCAAT 58.966 45.455 0.00 0.00 0.00 3.16
596 597 4.215109 GCCTCTCCCTTAAAATGCCAATA 58.785 43.478 0.00 0.00 0.00 1.90
597 598 4.835056 GCCTCTCCCTTAAAATGCCAATAT 59.165 41.667 0.00 0.00 0.00 1.28
598 599 5.279156 GCCTCTCCCTTAAAATGCCAATATG 60.279 44.000 0.00 0.00 0.00 1.78
599 600 5.279156 CCTCTCCCTTAAAATGCCAATATGC 60.279 44.000 0.00 0.00 0.00 3.14
600 601 4.588528 TCTCCCTTAAAATGCCAATATGCC 59.411 41.667 0.00 0.00 0.00 4.40
601 602 4.293494 TCCCTTAAAATGCCAATATGCCA 58.707 39.130 0.00 0.00 0.00 4.92
602 603 4.718774 TCCCTTAAAATGCCAATATGCCAA 59.281 37.500 0.00 0.00 0.00 4.52
603 604 5.190528 TCCCTTAAAATGCCAATATGCCAAA 59.809 36.000 0.00 0.00 0.00 3.28
604 605 5.296531 CCCTTAAAATGCCAATATGCCAAAC 59.703 40.000 0.00 0.00 0.00 2.93
605 606 5.296531 CCTTAAAATGCCAATATGCCAAACC 59.703 40.000 0.00 0.00 0.00 3.27
606 607 3.280197 AAATGCCAATATGCCAAACCC 57.720 42.857 0.00 0.00 0.00 4.11
607 608 1.876849 ATGCCAATATGCCAAACCCA 58.123 45.000 0.00 0.00 0.00 4.51
608 609 1.649321 TGCCAATATGCCAAACCCAA 58.351 45.000 0.00 0.00 0.00 4.12
609 610 1.554160 TGCCAATATGCCAAACCCAAG 59.446 47.619 0.00 0.00 0.00 3.61
610 611 1.743431 GCCAATATGCCAAACCCAAGC 60.743 52.381 0.00 0.00 0.00 4.01
611 612 1.134431 CCAATATGCCAAACCCAAGCC 60.134 52.381 0.00 0.00 0.00 4.35
612 613 1.134431 CAATATGCCAAACCCAAGCCC 60.134 52.381 0.00 0.00 0.00 5.19
613 614 1.042559 ATATGCCAAACCCAAGCCCG 61.043 55.000 0.00 0.00 0.00 6.13
614 615 2.433646 TATGCCAAACCCAAGCCCGT 62.434 55.000 0.00 0.00 0.00 5.28
615 616 3.680786 GCCAAACCCAAGCCCGTC 61.681 66.667 0.00 0.00 0.00 4.79
616 617 2.989253 CCAAACCCAAGCCCGTCC 60.989 66.667 0.00 0.00 0.00 4.79
617 618 2.203422 CAAACCCAAGCCCGTCCA 60.203 61.111 0.00 0.00 0.00 4.02
618 619 2.115266 AAACCCAAGCCCGTCCAG 59.885 61.111 0.00 0.00 0.00 3.86
619 620 3.507377 AAACCCAAGCCCGTCCAGG 62.507 63.158 0.00 0.00 40.63 4.45
627 628 4.463879 CCCGTCCAGGCTCTGCTG 62.464 72.222 0.00 0.00 39.21 4.41
628 629 4.463879 CCGTCCAGGCTCTGCTGG 62.464 72.222 0.00 0.00 41.85 4.85
629 630 3.699894 CGTCCAGGCTCTGCTGGT 61.700 66.667 6.62 0.00 41.28 4.00
630 631 2.046507 GTCCAGGCTCTGCTGGTG 60.047 66.667 6.62 0.00 41.28 4.17
631 632 3.324930 TCCAGGCTCTGCTGGTGG 61.325 66.667 6.62 0.00 41.28 4.61
632 633 4.421515 CCAGGCTCTGCTGGTGGG 62.422 72.222 0.00 0.00 36.08 4.61
636 637 4.025858 GCTCTGCTGGTGGGCTGA 62.026 66.667 0.00 0.00 38.23 4.26
637 638 2.752358 CTCTGCTGGTGGGCTGAA 59.248 61.111 0.00 0.00 39.10 3.02
638 639 1.073722 CTCTGCTGGTGGGCTGAAA 59.926 57.895 0.00 0.00 39.10 2.69
639 640 0.538057 CTCTGCTGGTGGGCTGAAAA 60.538 55.000 0.00 0.00 39.10 2.29
640 641 0.823356 TCTGCTGGTGGGCTGAAAAC 60.823 55.000 0.00 0.00 37.27 2.43
641 642 0.825010 CTGCTGGTGGGCTGAAAACT 60.825 55.000 0.00 0.00 33.89 2.66
642 643 0.823356 TGCTGGTGGGCTGAAAACTC 60.823 55.000 0.00 0.00 0.00 3.01
643 644 0.823356 GCTGGTGGGCTGAAAACTCA 60.823 55.000 0.00 0.00 0.00 3.41
644 645 1.242076 CTGGTGGGCTGAAAACTCAG 58.758 55.000 0.00 0.00 40.51 3.35
645 646 0.178992 TGGTGGGCTGAAAACTCAGG 60.179 55.000 4.42 0.00 38.14 3.86
649 650 4.500265 GCTGAAAACTCAGGCCCA 57.500 55.556 0.00 0.00 38.14 5.36
650 651 2.732289 GCTGAAAACTCAGGCCCAA 58.268 52.632 0.00 0.00 38.14 4.12
651 652 0.600057 GCTGAAAACTCAGGCCCAAG 59.400 55.000 0.00 0.00 38.14 3.61
652 653 1.819305 GCTGAAAACTCAGGCCCAAGA 60.819 52.381 8.91 0.00 38.14 3.02
653 654 1.882623 CTGAAAACTCAGGCCCAAGAC 59.117 52.381 8.91 0.00 34.28 3.01
654 655 1.494721 TGAAAACTCAGGCCCAAGACT 59.505 47.619 8.91 0.00 0.00 3.24
655 656 1.882623 GAAAACTCAGGCCCAAGACTG 59.117 52.381 8.91 0.00 36.07 3.51
656 657 0.111253 AAACTCAGGCCCAAGACTGG 59.889 55.000 8.91 0.00 43.10 4.00
662 663 2.757099 GCCCAAGACTGGCCATGG 60.757 66.667 15.17 15.17 43.33 3.66
663 664 2.043652 CCCAAGACTGGCCATGGG 60.044 66.667 24.55 24.55 46.07 4.00
674 675 3.428797 CCATGGGCAAGCTCATCG 58.571 61.111 4.05 0.00 34.41 3.84
675 676 2.191513 CCATGGGCAAGCTCATCGG 61.192 63.158 4.05 6.71 34.41 4.18
676 677 2.191513 CATGGGCAAGCTCATCGGG 61.192 63.158 4.05 0.00 34.41 5.14
677 678 4.802051 TGGGCAAGCTCATCGGGC 62.802 66.667 0.00 0.00 0.00 6.13
679 680 4.496336 GGCAAGCTCATCGGGCCT 62.496 66.667 0.84 0.00 41.39 5.19
680 681 2.505982 GCAAGCTCATCGGGCCTA 59.494 61.111 0.84 0.00 0.00 3.93
681 682 1.596477 GCAAGCTCATCGGGCCTAG 60.596 63.158 0.84 0.00 0.00 3.02
682 683 1.070445 CAAGCTCATCGGGCCTAGG 59.930 63.158 3.67 3.67 0.00 3.02
683 684 2.812619 AAGCTCATCGGGCCTAGGC 61.813 63.158 26.55 26.55 41.06 3.93
695 696 2.278332 GCCTAGGCCCTGGATTTTAG 57.722 55.000 24.19 0.33 34.56 1.85
696 697 1.202940 GCCTAGGCCCTGGATTTTAGG 60.203 57.143 24.19 10.45 34.56 2.69
701 702 4.579127 CCTGGATTTTAGGGCCGG 57.421 61.111 0.00 0.00 0.00 6.13
702 703 1.152756 CCTGGATTTTAGGGCCGGG 60.153 63.158 2.18 0.00 41.55 5.73
703 704 1.828224 CTGGATTTTAGGGCCGGGC 60.828 63.158 22.00 22.00 0.00 6.13
720 721 4.039092 CCTGGGTGGGCTGACAGG 62.039 72.222 4.26 0.00 43.87 4.00
721 722 4.039092 CTGGGTGGGCTGACAGGG 62.039 72.222 4.26 0.00 0.00 4.45
748 749 3.123157 CTGAGATGGCAGGACTAATGG 57.877 52.381 0.00 0.00 32.26 3.16
749 750 1.770658 TGAGATGGCAGGACTAATGGG 59.229 52.381 0.00 0.00 0.00 4.00
750 751 2.050144 GAGATGGCAGGACTAATGGGA 58.950 52.381 0.00 0.00 0.00 4.37
751 752 2.439507 GAGATGGCAGGACTAATGGGAA 59.560 50.000 0.00 0.00 0.00 3.97
752 753 2.441001 AGATGGCAGGACTAATGGGAAG 59.559 50.000 0.00 0.00 0.00 3.46
753 754 0.255890 TGGCAGGACTAATGGGAAGC 59.744 55.000 0.00 0.00 0.00 3.86
754 755 0.815615 GGCAGGACTAATGGGAAGCG 60.816 60.000 0.00 0.00 0.00 4.68
755 756 0.178068 GCAGGACTAATGGGAAGCGA 59.822 55.000 0.00 0.00 0.00 4.93
756 757 1.808133 GCAGGACTAATGGGAAGCGAG 60.808 57.143 0.00 0.00 0.00 5.03
757 758 1.482593 CAGGACTAATGGGAAGCGAGT 59.517 52.381 0.00 0.00 0.00 4.18
758 759 1.482593 AGGACTAATGGGAAGCGAGTG 59.517 52.381 0.00 0.00 0.00 3.51
759 760 1.473434 GGACTAATGGGAAGCGAGTGG 60.473 57.143 0.00 0.00 0.00 4.00
760 761 0.107654 ACTAATGGGAAGCGAGTGGC 60.108 55.000 0.00 0.00 44.05 5.01
761 762 0.815615 CTAATGGGAAGCGAGTGGCC 60.816 60.000 0.00 0.00 45.17 5.36
762 763 1.558167 TAATGGGAAGCGAGTGGCCA 61.558 55.000 0.00 0.00 45.17 5.36
763 764 2.424842 AATGGGAAGCGAGTGGCCAA 62.425 55.000 7.24 0.00 45.17 4.52
764 765 2.282180 GGGAAGCGAGTGGCCAAA 60.282 61.111 7.24 0.00 45.17 3.28
765 766 2.626780 GGGAAGCGAGTGGCCAAAC 61.627 63.158 7.24 3.21 45.17 2.93
766 767 1.896660 GGAAGCGAGTGGCCAAACA 60.897 57.895 7.24 0.00 45.17 2.83
767 768 1.244019 GGAAGCGAGTGGCCAAACAT 61.244 55.000 7.24 0.00 45.17 2.71
768 769 0.598065 GAAGCGAGTGGCCAAACATT 59.402 50.000 7.24 0.00 45.17 2.71
769 770 0.314935 AAGCGAGTGGCCAAACATTG 59.685 50.000 7.24 0.00 45.17 2.82
770 771 0.823356 AGCGAGTGGCCAAACATTGT 60.823 50.000 7.24 0.00 45.17 2.71
771 772 0.031994 GCGAGTGGCCAAACATTGTT 59.968 50.000 7.24 0.00 34.80 2.83
772 773 1.537990 GCGAGTGGCCAAACATTGTTT 60.538 47.619 7.24 8.97 34.80 2.83
773 774 2.820330 CGAGTGGCCAAACATTGTTTT 58.180 42.857 7.24 0.00 0.00 2.43
774 775 3.194062 CGAGTGGCCAAACATTGTTTTT 58.806 40.909 7.24 0.00 0.00 1.94
899 900 1.199327 CTCTCGACCACACGTACATGT 59.801 52.381 2.69 2.69 34.70 3.21
1006 1007 1.217882 GAGTAAATCGACCATGGCGG 58.782 55.000 22.59 11.61 42.50 6.13
1293 1294 2.359107 CGGTGCATGGACAGCTGT 60.359 61.111 21.88 21.88 35.90 4.40
1335 1336 1.001815 GCGACAAAGTTTAAGCCAGCA 60.002 47.619 0.00 0.00 0.00 4.41
1392 1393 1.079750 GGAGGTGCTGGACTTCGTC 60.080 63.158 5.41 0.00 31.28 4.20
1404 1405 0.243907 ACTTCGTCGTGGTGGATGAG 59.756 55.000 0.00 0.00 33.74 2.90
1576 1577 0.525761 CGCGGACAATTCCACCAAAT 59.474 50.000 0.00 0.00 43.00 2.32
1580 1581 2.442413 GGACAATTCCACCAAATCGGA 58.558 47.619 0.00 0.00 42.30 4.55
1615 1616 1.566231 CCAAATCCTAGGGAGCCAACT 59.434 52.381 9.46 0.00 34.05 3.16
1676 1680 1.224069 CTATTGCGCCATCCCGTCTG 61.224 60.000 4.18 0.00 0.00 3.51
1705 1709 1.066858 CAGCAGGGTGTCGTGATAGTT 60.067 52.381 0.00 0.00 0.00 2.24
1737 1741 2.884087 GATCACTCGAAGCCGGCGAA 62.884 60.000 23.20 6.87 37.32 4.70
1963 4536 5.821204 GCAAATATGACTTTTGCGGAGTAT 58.179 37.500 5.50 0.00 46.46 2.12
2058 4635 5.238650 GGCTAGTGTCTTTTTCTTTGCACTA 59.761 40.000 0.00 0.00 38.09 2.74
2088 4665 2.770164 TCTCTTTGCCTAGTGCCTTC 57.230 50.000 1.42 0.00 40.16 3.46
2109 4686 5.611796 TCTGTATGCACTCAACAAACATC 57.388 39.130 0.00 0.00 0.00 3.06
2118 4695 7.715657 TGCACTCAACAAACATCTATTTTCTT 58.284 30.769 0.00 0.00 0.00 2.52
2147 4725 8.637196 TTTATTTTCCTTCTCCCTTCTCTTTC 57.363 34.615 0.00 0.00 0.00 2.62
2148 4726 5.913946 TTTTCCTTCTCCCTTCTCTTTCT 57.086 39.130 0.00 0.00 0.00 2.52
2220 4806 9.366216 GTTTCTTTCCTTCTTGTACATTGTTTT 57.634 29.630 0.00 0.00 0.00 2.43
2298 4885 3.209843 TCCTATCTCCCTCTCCATTTCCA 59.790 47.826 0.00 0.00 0.00 3.53
2338 4925 9.167311 AGTGAACTTTTAGGCACTAGATATTTG 57.833 33.333 0.00 0.00 44.25 2.32
2379 4966 7.518731 TTTCAACTACAAGTGCATGAAAAAC 57.481 32.000 0.00 0.00 34.80 2.43
2483 5071 1.064003 ACATGTGGGTGCCAAGACTA 58.936 50.000 0.00 0.00 34.18 2.59
2555 5143 2.955660 TGTTCGAAAAGCATGAAACCCT 59.044 40.909 0.00 0.00 0.00 4.34
2559 5147 2.545532 CGAAAAGCATGAAACCCTGCAA 60.546 45.455 0.00 0.00 40.88 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.765219 GCACGTATTCAAGAAGTGTTCATATAT 58.235 33.333 0.05 0.00 35.46 0.86
4 5 7.223971 GGCACGTATTCAAGAAGTGTTCATATA 59.776 37.037 0.05 0.00 35.46 0.86
5 6 6.037172 GGCACGTATTCAAGAAGTGTTCATAT 59.963 38.462 0.05 0.00 35.46 1.78
6 7 5.350365 GGCACGTATTCAAGAAGTGTTCATA 59.650 40.000 0.05 0.00 35.46 2.15
7 8 4.154195 GGCACGTATTCAAGAAGTGTTCAT 59.846 41.667 0.05 0.00 35.46 2.57
8 9 3.496884 GGCACGTATTCAAGAAGTGTTCA 59.503 43.478 0.05 0.00 35.46 3.18
9 10 4.066710 GGCACGTATTCAAGAAGTGTTC 57.933 45.455 0.05 0.00 35.46 3.18
31 32 7.693952 TGTTCAATATTACTTCCGAAATGCTC 58.306 34.615 0.00 0.00 0.00 4.26
32 33 7.624360 TGTTCAATATTACTTCCGAAATGCT 57.376 32.000 0.00 0.00 0.00 3.79
33 34 8.856490 AATGTTCAATATTACTTCCGAAATGC 57.144 30.769 0.00 0.00 0.00 3.56
36 37 9.238368 AGGAAATGTTCAATATTACTTCCGAAA 57.762 29.630 0.00 0.00 0.00 3.46
37 38 8.801882 AGGAAATGTTCAATATTACTTCCGAA 57.198 30.769 0.00 0.00 0.00 4.30
38 39 8.801882 AAGGAAATGTTCAATATTACTTCCGA 57.198 30.769 0.00 0.00 0.00 4.55
49 50 9.558396 TCTTGCATTTTAAAGGAAATGTTCAAT 57.442 25.926 10.82 0.00 44.80 2.57
50 51 8.954950 TCTTGCATTTTAAAGGAAATGTTCAA 57.045 26.923 10.82 7.35 44.80 2.69
51 52 8.991026 CATCTTGCATTTTAAAGGAAATGTTCA 58.009 29.630 10.82 1.15 44.80 3.18
52 53 9.206870 TCATCTTGCATTTTAAAGGAAATGTTC 57.793 29.630 10.82 0.00 44.80 3.18
53 54 9.729281 ATCATCTTGCATTTTAAAGGAAATGTT 57.271 25.926 10.82 0.00 44.80 2.71
54 55 9.729281 AATCATCTTGCATTTTAAAGGAAATGT 57.271 25.926 10.82 0.00 44.80 2.71
91 92 9.522804 TGCATTTTAAGAAAAAGTAAATCACGT 57.477 25.926 0.00 0.00 37.97 4.49
92 93 9.777843 GTGCATTTTAAGAAAAAGTAAATCACG 57.222 29.630 0.00 0.00 37.97 4.35
97 98 9.862371 TGTCTGTGCATTTTAAGAAAAAGTAAA 57.138 25.926 0.00 0.00 37.97 2.01
98 99 9.296400 GTGTCTGTGCATTTTAAGAAAAAGTAA 57.704 29.630 0.00 0.00 37.97 2.24
99 100 8.682710 AGTGTCTGTGCATTTTAAGAAAAAGTA 58.317 29.630 0.00 0.00 37.97 2.24
100 101 7.547227 AGTGTCTGTGCATTTTAAGAAAAAGT 58.453 30.769 0.00 0.00 37.97 2.66
101 102 7.992180 AGTGTCTGTGCATTTTAAGAAAAAG 57.008 32.000 0.00 0.00 37.97 2.27
102 103 8.250332 AGAAGTGTCTGTGCATTTTAAGAAAAA 58.750 29.630 0.00 0.00 34.25 1.94
103 104 7.771183 AGAAGTGTCTGTGCATTTTAAGAAAA 58.229 30.769 0.00 0.00 30.83 2.29
104 105 7.333528 AGAAGTGTCTGTGCATTTTAAGAAA 57.666 32.000 0.00 0.00 30.83 2.52
105 106 6.942532 AGAAGTGTCTGTGCATTTTAAGAA 57.057 33.333 0.00 0.00 30.83 2.52
106 107 9.890629 ATATAGAAGTGTCTGTGCATTTTAAGA 57.109 29.630 0.00 0.00 35.12 2.10
107 108 9.926751 CATATAGAAGTGTCTGTGCATTTTAAG 57.073 33.333 0.00 0.00 35.12 1.85
108 109 9.665719 TCATATAGAAGTGTCTGTGCATTTTAA 57.334 29.630 0.00 0.00 35.12 1.52
109 110 9.665719 TTCATATAGAAGTGTCTGTGCATTTTA 57.334 29.630 0.00 0.00 35.12 1.52
110 111 8.565896 TTCATATAGAAGTGTCTGTGCATTTT 57.434 30.769 0.00 0.00 35.12 1.82
111 112 8.565896 TTTCATATAGAAGTGTCTGTGCATTT 57.434 30.769 0.00 0.00 37.57 2.32
112 113 8.743085 ATTTCATATAGAAGTGTCTGTGCATT 57.257 30.769 0.00 0.00 37.57 3.56
113 114 8.743085 AATTTCATATAGAAGTGTCTGTGCAT 57.257 30.769 0.00 0.00 37.57 3.96
114 115 9.836864 ATAATTTCATATAGAAGTGTCTGTGCA 57.163 29.630 0.00 0.00 37.57 4.57
155 156 9.486497 TGTTGATGTATTTTGCAAACATGTATT 57.514 25.926 17.69 0.00 34.09 1.89
156 157 9.656040 ATGTTGATGTATTTTGCAAACATGTAT 57.344 25.926 17.69 8.87 34.09 2.29
157 158 9.486497 AATGTTGATGTATTTTGCAAACATGTA 57.514 25.926 17.69 1.62 34.09 2.29
158 159 7.966246 ATGTTGATGTATTTTGCAAACATGT 57.034 28.000 17.69 0.00 34.09 3.21
159 160 9.666626 AAAATGTTGATGTATTTTGCAAACATG 57.333 25.926 17.69 0.00 35.73 3.21
161 162 9.499585 CAAAAATGTTGATGTATTTTGCAAACA 57.500 25.926 12.39 8.24 36.80 2.83
162 163 9.500864 ACAAAAATGTTGATGTATTTTGCAAAC 57.499 25.926 12.39 1.55 42.03 2.93
170 171 9.539825 TGCACTTTACAAAAATGTTGATGTATT 57.460 25.926 0.00 0.00 0.00 1.89
171 172 9.709495 ATGCACTTTACAAAAATGTTGATGTAT 57.291 25.926 0.00 0.00 0.00 2.29
172 173 8.976471 CATGCACTTTACAAAAATGTTGATGTA 58.024 29.630 0.00 0.00 0.00 2.29
173 174 7.710044 TCATGCACTTTACAAAAATGTTGATGT 59.290 29.630 0.00 0.00 0.00 3.06
174 175 8.074474 TCATGCACTTTACAAAAATGTTGATG 57.926 30.769 0.00 0.00 0.00 3.07
175 176 8.836268 ATCATGCACTTTACAAAAATGTTGAT 57.164 26.923 0.00 0.00 0.00 2.57
176 177 8.659925 AATCATGCACTTTACAAAAATGTTGA 57.340 26.923 0.00 0.00 0.00 3.18
177 178 9.796062 GTAATCATGCACTTTACAAAAATGTTG 57.204 29.630 0.00 0.00 0.00 3.33
178 179 8.987890 GGTAATCATGCACTTTACAAAAATGTT 58.012 29.630 13.94 0.00 0.00 2.71
179 180 8.367156 AGGTAATCATGCACTTTACAAAAATGT 58.633 29.630 13.94 0.00 0.00 2.71
180 181 8.761575 AGGTAATCATGCACTTTACAAAAATG 57.238 30.769 13.94 0.00 0.00 2.32
181 182 9.777297 AAAGGTAATCATGCACTTTACAAAAAT 57.223 25.926 13.94 0.00 30.30 1.82
182 183 9.606631 AAAAGGTAATCATGCACTTTACAAAAA 57.393 25.926 13.94 0.00 31.71 1.94
183 184 9.606631 AAAAAGGTAATCATGCACTTTACAAAA 57.393 25.926 13.94 0.00 31.71 2.44
190 191 9.777297 ACATTTTAAAAAGGTAATCATGCACTT 57.223 25.926 4.44 0.00 0.00 3.16
191 192 9.206870 CACATTTTAAAAAGGTAATCATGCACT 57.793 29.630 4.44 0.00 0.00 4.40
192 193 8.987890 ACACATTTTAAAAAGGTAATCATGCAC 58.012 29.630 4.44 0.00 0.00 4.57
193 194 9.553064 AACACATTTTAAAAAGGTAATCATGCA 57.447 25.926 4.44 0.00 0.00 3.96
194 195 9.810231 CAACACATTTTAAAAAGGTAATCATGC 57.190 29.630 4.44 0.00 0.00 4.06
252 253 8.694540 TGCCATAAAGTGCTCAATATTGTATTT 58.305 29.630 14.97 11.47 0.00 1.40
253 254 8.236585 TGCCATAAAGTGCTCAATATTGTATT 57.763 30.769 14.97 5.65 0.00 1.89
254 255 7.522725 GCTGCCATAAAGTGCTCAATATTGTAT 60.523 37.037 14.97 1.60 0.00 2.29
255 256 6.238731 GCTGCCATAAAGTGCTCAATATTGTA 60.239 38.462 14.97 1.94 0.00 2.41
256 257 5.450965 GCTGCCATAAAGTGCTCAATATTGT 60.451 40.000 14.97 0.00 0.00 2.71
257 258 4.980434 GCTGCCATAAAGTGCTCAATATTG 59.020 41.667 9.29 9.29 0.00 1.90
258 259 4.261322 CGCTGCCATAAAGTGCTCAATATT 60.261 41.667 0.00 0.00 0.00 1.28
259 260 3.251729 CGCTGCCATAAAGTGCTCAATAT 59.748 43.478 0.00 0.00 0.00 1.28
260 261 2.613595 CGCTGCCATAAAGTGCTCAATA 59.386 45.455 0.00 0.00 0.00 1.90
261 262 1.402968 CGCTGCCATAAAGTGCTCAAT 59.597 47.619 0.00 0.00 0.00 2.57
262 263 0.804364 CGCTGCCATAAAGTGCTCAA 59.196 50.000 0.00 0.00 0.00 3.02
263 264 1.026182 CCGCTGCCATAAAGTGCTCA 61.026 55.000 0.00 0.00 0.00 4.26
264 265 1.723870 CCGCTGCCATAAAGTGCTC 59.276 57.895 0.00 0.00 0.00 4.26
265 266 2.409870 GCCGCTGCCATAAAGTGCT 61.410 57.895 0.00 0.00 0.00 4.40
266 267 2.102946 GCCGCTGCCATAAAGTGC 59.897 61.111 0.00 0.00 0.00 4.40
276 277 1.139520 AAAATGAATCGGCCGCTGC 59.860 52.632 23.51 11.08 0.00 5.25
277 278 1.141591 GCAAAATGAATCGGCCGCTG 61.142 55.000 23.51 8.00 0.00 5.18
278 279 1.139520 GCAAAATGAATCGGCCGCT 59.860 52.632 23.51 8.48 0.00 5.52
279 280 2.223549 CGCAAAATGAATCGGCCGC 61.224 57.895 23.51 7.40 0.00 6.53
280 281 0.375454 TACGCAAAATGAATCGGCCG 59.625 50.000 22.12 22.12 0.00 6.13
281 282 1.268539 CCTACGCAAAATGAATCGGCC 60.269 52.381 0.00 0.00 0.00 6.13
282 283 1.859998 GCCTACGCAAAATGAATCGGC 60.860 52.381 0.00 0.00 34.03 5.54
283 284 1.670811 AGCCTACGCAAAATGAATCGG 59.329 47.619 0.00 0.00 37.52 4.18
284 285 3.405170 AAGCCTACGCAAAATGAATCG 57.595 42.857 0.00 0.00 37.52 3.34
285 286 6.729187 AGATTAAGCCTACGCAAAATGAATC 58.271 36.000 0.00 0.00 37.52 2.52
286 287 6.238759 GGAGATTAAGCCTACGCAAAATGAAT 60.239 38.462 0.00 0.00 37.52 2.57
287 288 5.065988 GGAGATTAAGCCTACGCAAAATGAA 59.934 40.000 0.00 0.00 37.52 2.57
288 289 4.574828 GGAGATTAAGCCTACGCAAAATGA 59.425 41.667 0.00 0.00 37.52 2.57
289 290 4.552767 CGGAGATTAAGCCTACGCAAAATG 60.553 45.833 0.15 0.00 37.52 2.32
290 291 3.560068 CGGAGATTAAGCCTACGCAAAAT 59.440 43.478 0.15 0.00 37.52 1.82
291 292 2.933906 CGGAGATTAAGCCTACGCAAAA 59.066 45.455 0.15 0.00 37.52 2.44
292 293 2.546778 CGGAGATTAAGCCTACGCAAA 58.453 47.619 0.15 0.00 37.52 3.68
293 294 2.218953 CGGAGATTAAGCCTACGCAA 57.781 50.000 0.15 0.00 37.52 4.85
294 295 3.959478 CGGAGATTAAGCCTACGCA 57.041 52.632 0.15 0.00 37.52 5.24
296 297 3.196613 GGCGGAGATTAAGCCTACG 57.803 57.895 7.66 7.66 46.83 3.51
300 301 1.887707 CCACGGCGGAGATTAAGCC 60.888 63.158 13.24 0.00 46.88 4.35
301 302 1.887707 CCCACGGCGGAGATTAAGC 60.888 63.158 13.24 0.00 36.56 3.09
302 303 1.227556 CCCCACGGCGGAGATTAAG 60.228 63.158 13.24 0.00 36.56 1.85
303 304 2.904905 CCCCACGGCGGAGATTAA 59.095 61.111 13.24 0.00 36.56 1.40
321 322 1.952296 GATGGGCCTTAGCAAGTCATG 59.048 52.381 4.53 0.00 42.56 3.07
322 323 1.849039 AGATGGGCCTTAGCAAGTCAT 59.151 47.619 4.53 0.00 42.56 3.06
323 324 1.065199 CAGATGGGCCTTAGCAAGTCA 60.065 52.381 4.53 0.00 42.56 3.41
324 325 1.210478 TCAGATGGGCCTTAGCAAGTC 59.790 52.381 4.53 0.00 42.56 3.01
325 326 1.289160 TCAGATGGGCCTTAGCAAGT 58.711 50.000 4.53 0.00 42.56 3.16
326 327 2.019984 GTTCAGATGGGCCTTAGCAAG 58.980 52.381 4.53 0.00 42.56 4.01
327 328 1.354031 TGTTCAGATGGGCCTTAGCAA 59.646 47.619 4.53 0.00 42.56 3.91
328 329 0.991146 TGTTCAGATGGGCCTTAGCA 59.009 50.000 4.53 0.00 42.56 3.49
329 330 2.019984 CTTGTTCAGATGGGCCTTAGC 58.980 52.381 4.53 0.00 38.76 3.09
330 331 2.019984 GCTTGTTCAGATGGGCCTTAG 58.980 52.381 4.53 0.00 0.00 2.18
331 332 1.678728 CGCTTGTTCAGATGGGCCTTA 60.679 52.381 4.53 0.00 0.00 2.69
332 333 0.962356 CGCTTGTTCAGATGGGCCTT 60.962 55.000 4.53 0.00 0.00 4.35
333 334 1.377725 CGCTTGTTCAGATGGGCCT 60.378 57.895 4.53 0.00 0.00 5.19
334 335 1.244019 AACGCTTGTTCAGATGGGCC 61.244 55.000 0.00 0.00 0.00 5.80
335 336 0.109597 CAACGCTTGTTCAGATGGGC 60.110 55.000 0.00 0.00 32.15 5.36
336 337 1.238439 ACAACGCTTGTTCAGATGGG 58.762 50.000 0.00 0.00 42.22 4.00
351 352 2.127758 CCGTTGCGAGCGAACAAC 60.128 61.111 8.23 8.23 42.15 3.32
352 353 3.342627 CCCGTTGCGAGCGAACAA 61.343 61.111 0.00 0.00 0.00 2.83
353 354 4.287781 TCCCGTTGCGAGCGAACA 62.288 61.111 0.00 0.00 0.00 3.18
354 355 3.774702 GTCCCGTTGCGAGCGAAC 61.775 66.667 0.00 0.00 0.00 3.95
357 358 2.067091 TATAGGTCCCGTTGCGAGCG 62.067 60.000 0.00 0.00 32.98 5.03
358 359 0.103572 TTATAGGTCCCGTTGCGAGC 59.896 55.000 0.00 0.00 0.00 5.03
359 360 2.589798 TTTATAGGTCCCGTTGCGAG 57.410 50.000 0.00 0.00 0.00 5.03
360 361 3.331478 TTTTTATAGGTCCCGTTGCGA 57.669 42.857 0.00 0.00 0.00 5.10
378 379 6.015688 CCCATGCATAGATAGATGTGCTTTTT 60.016 38.462 0.00 0.00 38.37 1.94
379 380 5.475909 CCCATGCATAGATAGATGTGCTTTT 59.524 40.000 0.00 0.00 38.37 2.27
380 381 5.008331 CCCATGCATAGATAGATGTGCTTT 58.992 41.667 0.00 0.00 38.37 3.51
381 382 4.287845 TCCCATGCATAGATAGATGTGCTT 59.712 41.667 0.00 0.00 38.37 3.91
382 383 3.842436 TCCCATGCATAGATAGATGTGCT 59.158 43.478 0.00 0.00 38.37 4.40
383 384 4.212143 TCCCATGCATAGATAGATGTGC 57.788 45.455 0.00 0.00 38.05 4.57
384 385 5.802465 ACTTCCCATGCATAGATAGATGTG 58.198 41.667 0.00 0.00 0.00 3.21
385 386 7.746243 ATACTTCCCATGCATAGATAGATGT 57.254 36.000 0.00 3.58 0.00 3.06
386 387 9.926158 GATATACTTCCCATGCATAGATAGATG 57.074 37.037 0.00 0.00 0.00 2.90
387 388 9.895507 AGATATACTTCCCATGCATAGATAGAT 57.104 33.333 0.00 0.00 0.00 1.98
388 389 9.140874 CAGATATACTTCCCATGCATAGATAGA 57.859 37.037 0.00 0.00 0.00 1.98
389 390 8.366401 CCAGATATACTTCCCATGCATAGATAG 58.634 40.741 0.00 3.28 0.00 2.08
390 391 7.202038 GCCAGATATACTTCCCATGCATAGATA 60.202 40.741 0.00 0.00 0.00 1.98
391 392 6.409005 GCCAGATATACTTCCCATGCATAGAT 60.409 42.308 0.00 0.00 0.00 1.98
392 393 5.104776 GCCAGATATACTTCCCATGCATAGA 60.105 44.000 0.00 0.00 0.00 1.98
393 394 5.121811 GCCAGATATACTTCCCATGCATAG 58.878 45.833 0.00 0.00 0.00 2.23
394 395 4.080356 GGCCAGATATACTTCCCATGCATA 60.080 45.833 0.00 0.00 0.00 3.14
395 396 3.308688 GGCCAGATATACTTCCCATGCAT 60.309 47.826 0.00 0.00 0.00 3.96
396 397 2.040278 GGCCAGATATACTTCCCATGCA 59.960 50.000 0.00 0.00 0.00 3.96
397 398 2.040278 TGGCCAGATATACTTCCCATGC 59.960 50.000 0.00 0.00 0.00 4.06
398 399 4.267536 CATGGCCAGATATACTTCCCATG 58.732 47.826 13.05 0.00 42.64 3.66
399 400 3.267812 CCATGGCCAGATATACTTCCCAT 59.732 47.826 13.05 0.00 37.37 4.00
400 401 2.644299 CCATGGCCAGATATACTTCCCA 59.356 50.000 13.05 0.00 32.95 4.37
401 402 2.025887 CCCATGGCCAGATATACTTCCC 60.026 54.545 13.05 0.00 0.00 3.97
402 403 2.619074 GCCCATGGCCAGATATACTTCC 60.619 54.545 13.05 0.00 44.06 3.46
403 404 2.716217 GCCCATGGCCAGATATACTTC 58.284 52.381 13.05 0.00 44.06 3.01
404 405 2.887151 GCCCATGGCCAGATATACTT 57.113 50.000 13.05 0.00 44.06 2.24
427 428 1.627864 TTTTTAGGCCTGACCCAAGC 58.372 50.000 17.99 0.00 40.58 4.01
449 450 0.179073 CCTCAGTTATCTGCCGTGGG 60.179 60.000 0.00 0.00 41.10 4.61
450 451 0.811616 GCCTCAGTTATCTGCCGTGG 60.812 60.000 0.00 0.00 41.10 4.94
451 452 0.811616 GGCCTCAGTTATCTGCCGTG 60.812 60.000 0.00 0.00 41.10 4.94
452 453 1.522569 GGCCTCAGTTATCTGCCGT 59.477 57.895 0.00 0.00 41.10 5.68
453 454 1.227674 GGGCCTCAGTTATCTGCCG 60.228 63.158 0.84 0.00 41.10 5.69
454 455 0.179034 CTGGGCCTCAGTTATCTGCC 60.179 60.000 4.53 0.00 41.10 4.85
455 456 0.833287 TCTGGGCCTCAGTTATCTGC 59.167 55.000 17.55 0.00 43.76 4.26
456 457 1.139853 GGTCTGGGCCTCAGTTATCTG 59.860 57.143 17.55 0.00 43.76 2.90
457 458 1.501582 GGTCTGGGCCTCAGTTATCT 58.498 55.000 17.55 0.00 43.76 1.98
458 459 0.470341 GGGTCTGGGCCTCAGTTATC 59.530 60.000 17.55 3.69 43.76 1.75
459 460 0.044855 AGGGTCTGGGCCTCAGTTAT 59.955 55.000 17.55 4.10 43.76 1.89
460 461 0.178873 AAGGGTCTGGGCCTCAGTTA 60.179 55.000 17.55 1.00 43.76 2.24
461 462 1.464198 AAGGGTCTGGGCCTCAGTT 60.464 57.895 17.55 5.42 43.76 3.16
462 463 1.920835 GAAGGGTCTGGGCCTCAGT 60.921 63.158 17.55 2.06 43.76 3.41
463 464 2.674220 GGAAGGGTCTGGGCCTCAG 61.674 68.421 13.43 13.43 44.68 3.35
464 465 2.610859 GGAAGGGTCTGGGCCTCA 60.611 66.667 4.53 0.00 0.00 3.86
465 466 2.203549 CTTGGAAGGGTCTGGGCCTC 62.204 65.000 4.53 0.00 0.00 4.70
466 467 2.121506 TTGGAAGGGTCTGGGCCT 60.122 61.111 4.53 0.00 0.00 5.19
467 468 2.356667 CTTGGAAGGGTCTGGGCC 59.643 66.667 0.00 0.00 0.00 5.80
468 469 2.361737 GCTTGGAAGGGTCTGGGC 60.362 66.667 0.00 0.00 0.00 5.36
469 470 2.356667 GGCTTGGAAGGGTCTGGG 59.643 66.667 0.00 0.00 0.00 4.45
470 471 2.080336 TTGGGCTTGGAAGGGTCTGG 62.080 60.000 0.00 0.00 0.00 3.86
471 472 0.895559 GTTGGGCTTGGAAGGGTCTG 60.896 60.000 0.00 0.00 0.00 3.51
472 473 1.460699 GTTGGGCTTGGAAGGGTCT 59.539 57.895 0.00 0.00 0.00 3.85
473 474 1.606601 GGTTGGGCTTGGAAGGGTC 60.607 63.158 0.00 0.00 0.00 4.46
474 475 1.739608 ATGGTTGGGCTTGGAAGGGT 61.740 55.000 0.00 0.00 0.00 4.34
475 476 0.334676 TATGGTTGGGCTTGGAAGGG 59.665 55.000 0.00 0.00 0.00 3.95
476 477 1.686115 CCTATGGTTGGGCTTGGAAGG 60.686 57.143 0.00 0.00 0.00 3.46
477 478 1.686115 CCCTATGGTTGGGCTTGGAAG 60.686 57.143 0.00 0.00 37.99 3.46
478 479 0.334676 CCCTATGGTTGGGCTTGGAA 59.665 55.000 0.00 0.00 37.99 3.53
479 480 2.006748 CCCTATGGTTGGGCTTGGA 58.993 57.895 0.00 0.00 37.99 3.53
480 481 4.684623 CCCTATGGTTGGGCTTGG 57.315 61.111 0.00 0.00 37.99 3.61
486 487 3.288092 GAAAAGTAGGCCCTATGGTTGG 58.712 50.000 0.00 0.00 0.00 3.77
487 488 3.963129 TGAAAAGTAGGCCCTATGGTTG 58.037 45.455 0.00 0.00 0.00 3.77
488 489 4.600062 CTTGAAAAGTAGGCCCTATGGTT 58.400 43.478 0.00 0.00 39.70 3.67
489 490 4.236527 CTTGAAAAGTAGGCCCTATGGT 57.763 45.455 0.00 0.00 39.70 3.55
503 504 2.206536 CCGGGCTTGGGCTTGAAAA 61.207 57.895 0.00 0.00 38.73 2.29
504 505 2.600173 CCGGGCTTGGGCTTGAAA 60.600 61.111 0.00 0.00 38.73 2.69
511 512 3.482232 CTAGATGGCCGGGCTTGGG 62.482 68.421 29.87 11.44 0.00 4.12
512 513 1.407656 TACTAGATGGCCGGGCTTGG 61.408 60.000 29.87 17.87 0.00 3.61
513 514 0.468226 TTACTAGATGGCCGGGCTTG 59.532 55.000 29.87 13.40 0.00 4.01
514 515 1.209621 TTTACTAGATGGCCGGGCTT 58.790 50.000 29.87 23.55 0.00 4.35
515 516 1.209621 TTTTACTAGATGGCCGGGCT 58.790 50.000 29.87 14.71 0.00 5.19
516 517 1.947456 CTTTTTACTAGATGGCCGGGC 59.053 52.381 23.42 23.42 0.00 6.13
517 518 1.947456 GCTTTTTACTAGATGGCCGGG 59.053 52.381 2.18 0.00 0.00 5.73
518 519 1.947456 GGCTTTTTACTAGATGGCCGG 59.053 52.381 0.00 0.00 0.00 6.13
519 520 1.947456 GGGCTTTTTACTAGATGGCCG 59.053 52.381 0.00 0.00 39.03 6.13
520 521 2.952310 CAGGGCTTTTTACTAGATGGCC 59.048 50.000 0.00 0.00 39.92 5.36
521 522 3.886123 TCAGGGCTTTTTACTAGATGGC 58.114 45.455 0.00 0.00 0.00 4.40
522 523 6.625960 GCTTTTCAGGGCTTTTTACTAGATGG 60.626 42.308 0.00 0.00 0.00 3.51
523 524 6.325596 GCTTTTCAGGGCTTTTTACTAGATG 58.674 40.000 0.00 0.00 0.00 2.90
524 525 5.419155 GGCTTTTCAGGGCTTTTTACTAGAT 59.581 40.000 0.00 0.00 0.00 1.98
525 526 4.765339 GGCTTTTCAGGGCTTTTTACTAGA 59.235 41.667 0.00 0.00 0.00 2.43
526 527 4.082190 GGGCTTTTCAGGGCTTTTTACTAG 60.082 45.833 0.00 0.00 0.00 2.57
527 528 3.830178 GGGCTTTTCAGGGCTTTTTACTA 59.170 43.478 0.00 0.00 0.00 1.82
528 529 2.632996 GGGCTTTTCAGGGCTTTTTACT 59.367 45.455 0.00 0.00 0.00 2.24
529 530 2.632996 AGGGCTTTTCAGGGCTTTTTAC 59.367 45.455 0.00 0.00 0.00 2.01
530 531 2.970987 AGGGCTTTTCAGGGCTTTTTA 58.029 42.857 0.00 0.00 0.00 1.52
531 532 1.806496 AGGGCTTTTCAGGGCTTTTT 58.194 45.000 0.00 0.00 0.00 1.94
532 533 1.806496 AAGGGCTTTTCAGGGCTTTT 58.194 45.000 0.00 0.00 0.00 2.27
533 534 2.110011 TCTAAGGGCTTTTCAGGGCTTT 59.890 45.455 0.00 0.00 33.62 3.51
534 535 1.710809 TCTAAGGGCTTTTCAGGGCTT 59.289 47.619 0.00 0.00 0.00 4.35
535 536 1.283321 CTCTAAGGGCTTTTCAGGGCT 59.717 52.381 0.00 0.00 0.00 5.19
536 537 1.756430 CTCTAAGGGCTTTTCAGGGC 58.244 55.000 0.00 0.00 0.00 5.19
537 538 1.283321 AGCTCTAAGGGCTTTTCAGGG 59.717 52.381 0.00 0.00 36.56 4.45
538 539 2.797177 AGCTCTAAGGGCTTTTCAGG 57.203 50.000 0.00 0.00 36.56 3.86
539 540 4.195416 CCTAAGCTCTAAGGGCTTTTCAG 58.805 47.826 12.88 5.17 46.24 3.02
540 541 3.054361 CCCTAAGCTCTAAGGGCTTTTCA 60.054 47.826 12.88 0.00 46.24 2.69
541 542 3.546724 CCCTAAGCTCTAAGGGCTTTTC 58.453 50.000 12.88 0.00 46.24 2.29
542 543 3.653835 CCCTAAGCTCTAAGGGCTTTT 57.346 47.619 12.88 0.00 46.24 2.27
548 549 0.831307 AACGGCCCTAAGCTCTAAGG 59.169 55.000 0.00 3.29 43.05 2.69
549 550 1.536284 CGAACGGCCCTAAGCTCTAAG 60.536 57.143 0.00 0.00 43.05 2.18
550 551 0.458669 CGAACGGCCCTAAGCTCTAA 59.541 55.000 0.00 0.00 43.05 2.10
551 552 0.682209 ACGAACGGCCCTAAGCTCTA 60.682 55.000 0.00 0.00 43.05 2.43
552 553 1.946475 GACGAACGGCCCTAAGCTCT 61.946 60.000 0.00 0.00 43.05 4.09
553 554 1.518792 GACGAACGGCCCTAAGCTC 60.519 63.158 0.00 0.00 43.05 4.09
554 555 2.577593 GACGAACGGCCCTAAGCT 59.422 61.111 0.00 0.00 43.05 3.74
555 556 2.884207 CGACGAACGGCCCTAAGC 60.884 66.667 0.00 0.00 42.60 3.09
564 565 4.493747 GGAGAGGCCCGACGAACG 62.494 72.222 0.00 0.00 42.18 3.95
573 574 1.341976 TGGCATTTTAAGGGAGAGGCC 60.342 52.381 0.00 0.00 40.51 5.19
574 575 2.143876 TGGCATTTTAAGGGAGAGGC 57.856 50.000 0.00 0.00 0.00 4.70
575 576 5.279156 GCATATTGGCATTTTAAGGGAGAGG 60.279 44.000 0.00 0.00 0.00 3.69
576 577 5.279156 GGCATATTGGCATTTTAAGGGAGAG 60.279 44.000 0.00 0.00 43.14 3.20
577 578 4.588528 GGCATATTGGCATTTTAAGGGAGA 59.411 41.667 0.00 0.00 43.14 3.71
578 579 4.886579 GGCATATTGGCATTTTAAGGGAG 58.113 43.478 0.00 0.00 43.14 4.30
579 580 4.953940 GGCATATTGGCATTTTAAGGGA 57.046 40.909 0.00 0.00 43.14 4.20
590 591 1.743431 GCTTGGGTTTGGCATATTGGC 60.743 52.381 0.00 0.00 44.03 4.52
591 592 1.134431 GGCTTGGGTTTGGCATATTGG 60.134 52.381 0.00 0.00 0.00 3.16
592 593 1.134431 GGGCTTGGGTTTGGCATATTG 60.134 52.381 0.00 0.00 0.00 1.90
593 594 1.203237 GGGCTTGGGTTTGGCATATT 58.797 50.000 0.00 0.00 0.00 1.28
594 595 1.042559 CGGGCTTGGGTTTGGCATAT 61.043 55.000 0.00 0.00 0.00 1.78
595 596 1.680651 CGGGCTTGGGTTTGGCATA 60.681 57.895 0.00 0.00 0.00 3.14
596 597 2.996734 CGGGCTTGGGTTTGGCAT 60.997 61.111 0.00 0.00 0.00 4.40
597 598 4.531426 ACGGGCTTGGGTTTGGCA 62.531 61.111 0.00 0.00 0.00 4.92
598 599 3.680786 GACGGGCTTGGGTTTGGC 61.681 66.667 0.00 0.00 0.00 4.52
599 600 2.989253 GGACGGGCTTGGGTTTGG 60.989 66.667 0.00 0.00 0.00 3.28
600 601 2.203422 TGGACGGGCTTGGGTTTG 60.203 61.111 0.00 0.00 0.00 2.93
601 602 2.115266 CTGGACGGGCTTGGGTTT 59.885 61.111 0.00 0.00 0.00 3.27
602 603 3.966543 CCTGGACGGGCTTGGGTT 61.967 66.667 0.00 0.00 0.00 4.11
610 611 4.463879 CAGCAGAGCCTGGACGGG 62.464 72.222 0.00 0.00 31.21 5.28
619 620 3.557903 TTCAGCCCACCAGCAGAGC 62.558 63.158 0.00 0.00 34.23 4.09
620 621 0.538057 TTTTCAGCCCACCAGCAGAG 60.538 55.000 0.00 0.00 34.23 3.35
621 622 0.823356 GTTTTCAGCCCACCAGCAGA 60.823 55.000 0.00 0.00 34.23 4.26
622 623 0.825010 AGTTTTCAGCCCACCAGCAG 60.825 55.000 0.00 0.00 34.23 4.24
623 624 0.823356 GAGTTTTCAGCCCACCAGCA 60.823 55.000 0.00 0.00 34.23 4.41
624 625 0.823356 TGAGTTTTCAGCCCACCAGC 60.823 55.000 0.00 0.00 0.00 4.85
625 626 1.242076 CTGAGTTTTCAGCCCACCAG 58.758 55.000 0.00 0.00 43.98 4.00
626 627 3.419793 CTGAGTTTTCAGCCCACCA 57.580 52.632 0.00 0.00 43.98 4.17
628 629 1.527433 GGCCTGAGTTTTCAGCCCAC 61.527 60.000 0.00 0.00 45.93 4.61
629 630 1.228552 GGCCTGAGTTTTCAGCCCA 60.229 57.895 0.00 0.00 45.93 5.36
634 635 1.494721 AGTCTTGGGCCTGAGTTTTCA 59.505 47.619 4.53 0.00 0.00 2.69
635 636 1.882623 CAGTCTTGGGCCTGAGTTTTC 59.117 52.381 4.53 0.00 0.00 2.29
636 637 1.479389 CCAGTCTTGGGCCTGAGTTTT 60.479 52.381 4.53 0.00 41.05 2.43
637 638 0.111253 CCAGTCTTGGGCCTGAGTTT 59.889 55.000 4.53 0.00 41.05 2.66
638 639 1.763770 CCAGTCTTGGGCCTGAGTT 59.236 57.895 4.53 0.00 41.05 3.01
639 640 2.900106 GCCAGTCTTGGGCCTGAGT 61.900 63.158 4.53 3.21 45.87 3.41
640 641 2.045536 GCCAGTCTTGGGCCTGAG 60.046 66.667 4.53 2.79 45.87 3.35
646 647 2.043652 CCCATGGCCAGTCTTGGG 60.044 66.667 24.55 24.55 45.16 4.12
647 648 2.757099 GCCCATGGCCAGTCTTGG 60.757 66.667 13.05 14.30 44.06 3.61
657 658 2.191513 CCGATGAGCTTGCCCATGG 61.192 63.158 4.14 4.14 0.00 3.66
658 659 2.191513 CCCGATGAGCTTGCCCATG 61.192 63.158 0.00 0.00 0.00 3.66
659 660 2.194056 CCCGATGAGCTTGCCCAT 59.806 61.111 0.00 0.00 0.00 4.00
660 661 4.802051 GCCCGATGAGCTTGCCCA 62.802 66.667 0.00 0.00 0.00 5.36
662 663 3.106986 TAGGCCCGATGAGCTTGCC 62.107 63.158 0.00 0.00 42.48 4.52
663 664 1.596477 CTAGGCCCGATGAGCTTGC 60.596 63.158 0.00 0.00 0.00 4.01
664 665 1.070445 CCTAGGCCCGATGAGCTTG 59.930 63.158 0.00 0.00 0.00 4.01
665 666 2.812619 GCCTAGGCCCGATGAGCTT 61.813 63.158 24.19 0.00 34.56 3.74
666 667 3.237741 GCCTAGGCCCGATGAGCT 61.238 66.667 24.19 0.00 34.56 4.09
676 677 1.202940 CCTAAAATCCAGGGCCTAGGC 60.203 57.143 26.55 26.55 41.06 3.93
677 678 1.425448 CCCTAAAATCCAGGGCCTAGG 59.575 57.143 5.28 10.90 46.27 3.02
678 679 2.959465 CCCTAAAATCCAGGGCCTAG 57.041 55.000 5.28 0.00 46.27 3.02
684 685 1.152756 CCCGGCCCTAAAATCCAGG 60.153 63.158 0.00 0.00 0.00 4.45
685 686 1.828224 GCCCGGCCCTAAAATCCAG 60.828 63.158 0.00 0.00 0.00 3.86
686 687 2.277404 GCCCGGCCCTAAAATCCA 59.723 61.111 0.00 0.00 0.00 3.41
687 688 2.520982 GGCCCGGCCCTAAAATCC 60.521 66.667 18.83 0.00 44.06 3.01
703 704 4.039092 CCTGTCAGCCCACCCAGG 62.039 72.222 0.00 0.00 38.63 4.45
704 705 4.039092 CCCTGTCAGCCCACCCAG 62.039 72.222 0.00 0.00 0.00 4.45
728 729 2.224475 CCCATTAGTCCTGCCATCTCAG 60.224 54.545 0.00 0.00 0.00 3.35
729 730 1.770658 CCCATTAGTCCTGCCATCTCA 59.229 52.381 0.00 0.00 0.00 3.27
730 731 2.050144 TCCCATTAGTCCTGCCATCTC 58.950 52.381 0.00 0.00 0.00 2.75
731 732 2.196742 TCCCATTAGTCCTGCCATCT 57.803 50.000 0.00 0.00 0.00 2.90
732 733 2.856222 CTTCCCATTAGTCCTGCCATC 58.144 52.381 0.00 0.00 0.00 3.51
733 734 1.133668 GCTTCCCATTAGTCCTGCCAT 60.134 52.381 0.00 0.00 0.00 4.40
734 735 0.255890 GCTTCCCATTAGTCCTGCCA 59.744 55.000 0.00 0.00 0.00 4.92
735 736 0.815615 CGCTTCCCATTAGTCCTGCC 60.816 60.000 0.00 0.00 0.00 4.85
736 737 0.178068 TCGCTTCCCATTAGTCCTGC 59.822 55.000 0.00 0.00 0.00 4.85
737 738 1.482593 ACTCGCTTCCCATTAGTCCTG 59.517 52.381 0.00 0.00 0.00 3.86
738 739 1.482593 CACTCGCTTCCCATTAGTCCT 59.517 52.381 0.00 0.00 0.00 3.85
739 740 1.473434 CCACTCGCTTCCCATTAGTCC 60.473 57.143 0.00 0.00 0.00 3.85
740 741 1.941325 CCACTCGCTTCCCATTAGTC 58.059 55.000 0.00 0.00 0.00 2.59
741 742 0.107654 GCCACTCGCTTCCCATTAGT 60.108 55.000 0.00 0.00 0.00 2.24
742 743 0.815615 GGCCACTCGCTTCCCATTAG 60.816 60.000 0.00 0.00 37.74 1.73
743 744 1.223487 GGCCACTCGCTTCCCATTA 59.777 57.895 0.00 0.00 37.74 1.90
744 745 2.044946 GGCCACTCGCTTCCCATT 60.045 61.111 0.00 0.00 37.74 3.16
745 746 2.424842 TTTGGCCACTCGCTTCCCAT 62.425 55.000 3.88 0.00 37.74 4.00
746 747 3.126703 TTTGGCCACTCGCTTCCCA 62.127 57.895 3.88 0.00 37.74 4.37
747 748 2.282180 TTTGGCCACTCGCTTCCC 60.282 61.111 3.88 0.00 37.74 3.97
748 749 1.244019 ATGTTTGGCCACTCGCTTCC 61.244 55.000 3.88 0.00 37.74 3.46
749 750 0.598065 AATGTTTGGCCACTCGCTTC 59.402 50.000 3.88 0.00 37.74 3.86
750 751 0.314935 CAATGTTTGGCCACTCGCTT 59.685 50.000 3.88 0.00 37.74 4.68
751 752 0.823356 ACAATGTTTGGCCACTCGCT 60.823 50.000 3.88 0.00 37.74 4.93
752 753 0.031994 AACAATGTTTGGCCACTCGC 59.968 50.000 3.88 0.00 34.12 5.03
753 754 2.507339 AAACAATGTTTGGCCACTCG 57.493 45.000 3.88 0.00 34.12 4.18
774 775 2.817839 GCCACTGGCTTCCCTAGAAAAA 60.818 50.000 13.28 0.00 46.69 1.94
775 776 1.271926 GCCACTGGCTTCCCTAGAAAA 60.272 52.381 13.28 0.00 46.69 2.29
776 777 0.328258 GCCACTGGCTTCCCTAGAAA 59.672 55.000 13.28 0.00 46.69 2.52
777 778 1.991230 GCCACTGGCTTCCCTAGAA 59.009 57.895 13.28 0.00 46.69 2.10
778 779 3.727387 GCCACTGGCTTCCCTAGA 58.273 61.111 13.28 0.00 46.69 2.43
812 813 0.321671 CCACTCGCTTCCCTGAAGAA 59.678 55.000 7.98 0.00 41.71 2.52
814 815 1.743252 GCCACTCGCTTCCCTGAAG 60.743 63.158 0.00 0.00 42.03 3.02
815 816 2.347490 GCCACTCGCTTCCCTGAA 59.653 61.111 0.00 0.00 0.00 3.02
816 817 3.706373 GGCCACTCGCTTCCCTGA 61.706 66.667 0.00 0.00 37.74 3.86
817 818 4.020617 TGGCCACTCGCTTCCCTG 62.021 66.667 0.00 0.00 37.74 4.45
1251 1252 3.056328 GTCTTGCCGTTGGGGAGC 61.056 66.667 0.00 0.00 38.47 4.70
1392 1393 0.462581 CCACATCCTCATCCACCACG 60.463 60.000 0.00 0.00 0.00 4.94
1404 1405 0.543749 CCCTGGACTTCTCCACATCC 59.456 60.000 0.00 0.00 42.15 3.51
1421 1422 1.679898 CACTTCCACTCCCAGTCCC 59.320 63.158 0.00 0.00 0.00 4.46
1576 1577 2.224892 TGGATTTGGATTTGGTGTCCGA 60.225 45.455 0.00 0.00 38.64 4.55
1580 1581 4.845796 AGGATTTGGATTTGGATTTGGTGT 59.154 37.500 0.00 0.00 0.00 4.16
1615 1616 6.989659 AGGTTGAAAGTAGTCATAACGAAGA 58.010 36.000 0.00 0.00 0.00 2.87
1705 1709 4.010349 TCGAGTGATCAGCTTCTCTAACA 58.990 43.478 0.00 0.00 0.00 2.41
1737 1741 2.820197 GGTGCTAAAGCTAAAGCCAGTT 59.180 45.455 15.51 0.00 43.38 3.16
1814 1818 6.921307 GTGTACCAAAATGTACCAAAAGGAAG 59.079 38.462 0.00 0.00 40.29 3.46
1945 4518 8.556213 AAAAACTATACTCCGCAAAAGTCATA 57.444 30.769 0.00 0.00 0.00 2.15
2025 4601 6.603599 AGAAAAAGACACTAGCCAAAGAGTTT 59.396 34.615 0.00 0.00 0.00 2.66
2088 4665 5.618056 AGATGTTTGTTGAGTGCATACAG 57.382 39.130 0.00 0.00 32.95 2.74
2138 4716 1.468395 GCGGTCCTCGAGAAAGAGAAG 60.468 57.143 15.71 1.42 40.57 2.85
2147 4725 0.600255 AAGTGTTTGCGGTCCTCGAG 60.600 55.000 5.13 5.13 42.43 4.04
2148 4726 0.599204 GAAGTGTTTGCGGTCCTCGA 60.599 55.000 0.00 0.00 42.43 4.04
2274 4861 4.849235 GGAAATGGAGAGGGAGATAGGAAT 59.151 45.833 0.00 0.00 0.00 3.01
2353 4940 8.439286 GTTTTTCATGCACTTGTAGTTGAAAAA 58.561 29.630 20.87 20.87 43.16 1.94
2483 5071 6.378280 ACCAACAAACTTCATTTTCAGAGTCT 59.622 34.615 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.