Multiple sequence alignment - TraesCS2B01G277100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G277100 chr2B 100.000 3479 0 0 1 3479 382737047 382733569 0.000000e+00 6425.0
1 TraesCS2B01G277100 chr2B 82.540 189 28 3 91 278 322989176 322989360 9.990000e-36 161.0
2 TraesCS2B01G277100 chr2B 89.189 111 7 5 2977 3084 382598342 382598234 2.180000e-27 134.0
3 TraesCS2B01G277100 chr2B 84.722 72 10 1 104 175 432800616 432800686 1.730000e-08 71.3
4 TraesCS2B01G277100 chr2D 93.292 805 36 10 705 1504 314818725 314817934 0.000000e+00 1171.0
5 TraesCS2B01G277100 chr2D 89.645 676 65 3 3 674 314825331 314824657 0.000000e+00 856.0
6 TraesCS2B01G277100 chr2D 88.291 743 36 19 1883 2610 314797365 314796659 0.000000e+00 843.0
7 TraesCS2B01G277100 chr2D 96.392 388 14 0 1500 1887 314798311 314797924 1.050000e-179 640.0
8 TraesCS2B01G277100 chr2D 88.364 275 20 2 2818 3090 314045683 314045947 1.560000e-83 320.0
9 TraesCS2B01G277100 chr2D 95.480 177 8 0 2639 2815 314796661 314796485 2.040000e-72 283.0
10 TraesCS2B01G277100 chr2D 85.027 187 13 4 2904 3086 314051010 314051185 3.570000e-40 176.0
11 TraesCS2B01G277100 chr2D 91.818 110 8 1 2977 3086 314499052 314498944 6.010000e-33 152.0
12 TraesCS2B01G277100 chr2D 89.831 118 10 2 2974 3090 314050744 314050860 2.160000e-32 150.0
13 TraesCS2B01G277100 chr2D 74.425 348 67 12 329 661 54080821 54081161 2.820000e-26 130.0
14 TraesCS2B01G277100 chr2D 95.122 82 4 0 2730 2811 314047751 314047832 2.820000e-26 130.0
15 TraesCS2B01G277100 chr2D 95.652 46 2 0 3045 3090 314566767 314566722 1.340000e-09 75.0
16 TraesCS2B01G277100 chr2D 75.723 173 29 10 106 273 419028646 419028810 1.340000e-09 75.0
17 TraesCS2B01G277100 chr2D 95.238 42 2 0 106 147 323079164 323079205 2.240000e-07 67.6
18 TraesCS2B01G277100 chr4B 98.219 393 7 0 3087 3479 564390421 564390813 0.000000e+00 688.0
19 TraesCS2B01G277100 chr4B 83.969 131 19 2 426 556 106969639 106969511 1.310000e-24 124.0
20 TraesCS2B01G277100 chr2A 93.750 464 17 5 2639 3090 421058884 421059347 0.000000e+00 686.0
21 TraesCS2B01G277100 chr2A 90.608 362 16 9 2261 2610 421058531 421058886 6.800000e-127 464.0
22 TraesCS2B01G277100 chr2A 92.661 109 8 0 2982 3090 422223039 422222931 1.290000e-34 158.0
23 TraesCS2B01G277100 chr2A 91.489 94 7 1 2974 3067 421062659 421062751 1.010000e-25 128.0
24 TraesCS2B01G277100 chr2A 82.550 149 17 9 2818 2966 422223227 422223088 4.720000e-24 122.0
25 TraesCS2B01G277100 chr4A 88.204 373 28 7 3095 3467 42118472 42118828 6.900000e-117 431.0
26 TraesCS2B01G277100 chr4A 79.021 143 25 5 3088 3227 627604312 627604452 3.700000e-15 93.5
27 TraesCS2B01G277100 chr7A 86.807 379 33 7 3089 3467 380031485 380031846 1.160000e-109 407.0
28 TraesCS2B01G277100 chr3A 90.714 280 19 3 3090 3369 542926512 542926240 1.970000e-97 366.0
29 TraesCS2B01G277100 chr3A 78.648 281 43 10 386 661 608736849 608737117 1.660000e-38 171.0
30 TraesCS2B01G277100 chr3D 83.142 261 37 6 21 278 183151500 183151756 7.510000e-57 231.0
31 TraesCS2B01G277100 chr3D 78.025 314 49 14 284 592 429297584 429297286 2.760000e-41 180.0
32 TraesCS2B01G277100 chr7B 82.186 247 39 5 28 272 85277399 85277642 1.270000e-49 207.0
33 TraesCS2B01G277100 chr7B 94.828 58 2 1 3088 3144 619076096 619076153 4.780000e-14 89.8
34 TraesCS2B01G277100 chr6B 95.789 95 4 0 3094 3188 533283840 533283746 1.670000e-33 154.0
35 TraesCS2B01G277100 chr5B 85.621 153 11 4 3093 3244 605753968 605753826 2.160000e-32 150.0
36 TraesCS2B01G277100 chr1D 76.678 283 56 10 385 661 461003442 461003164 7.780000e-32 148.0
37 TraesCS2B01G277100 chr1D 85.437 103 8 5 434 533 492942639 492942737 2.210000e-17 100.0
38 TraesCS2B01G277100 chr1D 79.439 107 19 3 426 531 203313598 203313494 4.820000e-09 73.1
39 TraesCS2B01G277100 chr1B 73.559 295 57 17 384 661 638916591 638916881 3.700000e-15 93.5
40 TraesCS2B01G277100 chr1B 93.333 60 3 1 3090 3148 662036508 662036567 1.720000e-13 87.9
41 TraesCS2B01G277100 chr5D 89.552 67 5 2 3084 3148 332369975 332370041 2.230000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G277100 chr2B 382733569 382737047 3478 True 6425.000000 6425 100.000000 1 3479 1 chr2B.!!$R2 3478
1 TraesCS2B01G277100 chr2D 314817934 314818725 791 True 1171.000000 1171 93.292000 705 1504 1 chr2D.!!$R3 799
2 TraesCS2B01G277100 chr2D 314824657 314825331 674 True 856.000000 856 89.645000 3 674 1 chr2D.!!$R4 671
3 TraesCS2B01G277100 chr2D 314796485 314798311 1826 True 588.666667 843 93.387667 1500 2815 3 chr2D.!!$R5 1315
4 TraesCS2B01G277100 chr2A 421058531 421062751 4220 False 426.000000 686 91.949000 2261 3090 3 chr2A.!!$F1 829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 706 0.110486 AAGGGTGATGACAACGGCTT 59.890 50.0 0.0 0.0 34.03 4.35 F
726 730 0.811219 TCGGCTCGCATCAATCCTTG 60.811 55.0 0.0 0.0 0.00 3.61 F
1571 1582 0.391661 GAGGCGAGTTCATGGAGCAA 60.392 55.0 0.0 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 1517 0.030705 TCCAGATCCCCTCCTCCTTG 60.031 60.0 0.00 0.00 0.0 3.61 R
1665 1676 0.038251 AGTCGCACTGCAGAATTCGA 60.038 50.0 23.35 18.54 0.0 3.71 R
3295 5436 0.037697 TATGCAACGGTCAGCGAGTT 60.038 50.0 1.65 0.00 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.109126 GCCGGCAATGTGGAGAGTC 61.109 63.158 24.80 0.00 0.00 3.36
50 51 1.605058 ATGTGGAGAGTCCGTTCCCG 61.605 60.000 0.00 0.00 40.17 5.14
63 64 1.846124 TTCCCGGGAAGGTCTGCTT 60.846 57.895 32.53 0.00 38.74 3.91
112 113 4.387598 CTTGAGCCTGGGATGATCTTTAG 58.612 47.826 0.00 0.00 0.00 1.85
120 121 6.740122 GCCTGGGATGATCTTTAGTACTTCTC 60.740 46.154 0.00 0.00 0.00 2.87
128 129 6.829298 TGATCTTTAGTACTTCTCGATGACCT 59.171 38.462 0.00 0.00 0.00 3.85
191 192 0.918983 TGTCTTGGGGTGGATCCATC 59.081 55.000 19.62 18.47 38.11 3.51
197 198 0.753111 GGGGTGGATCCATCTTGTGC 60.753 60.000 24.26 7.29 38.11 4.57
209 210 3.152341 CATCTTGTGCCATATCCTTCCC 58.848 50.000 0.00 0.00 0.00 3.97
211 212 1.140852 CTTGTGCCATATCCTTCCCGA 59.859 52.381 0.00 0.00 0.00 5.14
216 217 1.541233 GCCATATCCTTCCCGACACAG 60.541 57.143 0.00 0.00 0.00 3.66
231 232 1.900498 ACAGAGGCTGCAACTTGCC 60.900 57.895 11.29 6.59 44.23 4.52
244 245 4.308458 TTGCCGGTCCGTGGTCAG 62.308 66.667 11.06 0.00 0.00 3.51
255 256 0.459585 CGTGGTCAGGGGTATGAACG 60.460 60.000 0.00 0.00 39.91 3.95
273 274 1.282248 CGCCCACTGTTCACTACACG 61.282 60.000 0.00 0.00 32.10 4.49
279 280 1.752498 ACTGTTCACTACACGGACACA 59.248 47.619 0.00 0.00 32.10 3.72
282 283 2.362717 TGTTCACTACACGGACACATGA 59.637 45.455 0.00 0.00 0.00 3.07
289 290 1.134401 ACACGGACACATGATGGATCC 60.134 52.381 4.20 4.20 0.00 3.36
309 310 3.316573 GACCCTTGTCGGCTGGAGG 62.317 68.421 1.31 0.00 0.00 4.30
310 311 4.101448 CCCTTGTCGGCTGGAGGG 62.101 72.222 13.06 13.06 42.66 4.30
316 317 3.249189 TCGGCTGGAGGGCTTTGT 61.249 61.111 0.00 0.00 38.46 2.83
321 322 2.179427 GGCTGGAGGGCTTTGTTTTAT 58.821 47.619 0.00 0.00 37.53 1.40
355 356 7.741785 TGAGTTTTCTTAGGATTTGTGTCCTA 58.258 34.615 0.00 0.00 46.70 2.94
371 372 5.105752 GTGTCCTACTGATGAAGATGTGAC 58.894 45.833 0.00 0.00 0.00 3.67
472 473 1.028868 GTGGAAGGCATGTCTCTGGC 61.029 60.000 0.00 0.00 41.74 4.85
490 491 3.667448 CGGATCTCGCAGGATTTGA 57.333 52.632 0.00 0.00 0.00 2.69
497 498 2.103094 TCTCGCAGGATTTGATAGGTGG 59.897 50.000 0.00 0.00 0.00 4.61
505 506 5.711976 CAGGATTTGATAGGTGGTTGTCTTT 59.288 40.000 0.00 0.00 0.00 2.52
516 517 2.174639 TGGTTGTCTTTGGTGGATCTGT 59.825 45.455 0.00 0.00 0.00 3.41
534 535 4.389374 TCTGTTTGGATCCAGTCTTTGTC 58.611 43.478 15.53 1.76 0.00 3.18
535 536 3.486383 TGTTTGGATCCAGTCTTTGTCC 58.514 45.455 15.53 0.00 0.00 4.02
539 540 1.630148 GATCCAGTCTTTGTCCGTCG 58.370 55.000 0.00 0.00 0.00 5.12
555 556 1.609932 GTCGACATTCGCGTGTCTTA 58.390 50.000 22.54 11.37 44.89 2.10
556 557 2.182825 GTCGACATTCGCGTGTCTTAT 58.817 47.619 22.54 0.00 44.89 1.73
566 567 2.738643 CGCGTGTCTTATGGTTGGATCT 60.739 50.000 0.00 0.00 0.00 2.75
569 570 4.201822 GCGTGTCTTATGGTTGGATCTTTC 60.202 45.833 0.00 0.00 0.00 2.62
570 571 5.178797 CGTGTCTTATGGTTGGATCTTTCT 58.821 41.667 0.00 0.00 0.00 2.52
573 574 6.092807 GTGTCTTATGGTTGGATCTTTCTGAC 59.907 42.308 0.00 0.00 0.00 3.51
574 575 6.173339 GTCTTATGGTTGGATCTTTCTGACA 58.827 40.000 0.00 0.00 0.00 3.58
578 579 5.497464 TGGTTGGATCTTTCTGACATACA 57.503 39.130 0.00 0.00 0.00 2.29
594 595 3.195610 ACATACACTTCTCTTCATCGGCA 59.804 43.478 0.00 0.00 0.00 5.69
596 597 3.340814 ACACTTCTCTTCATCGGCAAT 57.659 42.857 0.00 0.00 0.00 3.56
601 602 7.047891 ACACTTCTCTTCATCGGCAATATTTA 58.952 34.615 0.00 0.00 0.00 1.40
610 611 6.437928 TCATCGGCAATATTTATTGTTCAGC 58.562 36.000 10.99 0.00 43.72 4.26
613 614 4.442073 CGGCAATATTTATTGTTCAGCTGC 59.558 41.667 9.47 0.00 43.72 5.25
615 616 4.085415 GCAATATTTATTGTTCAGCTGCGC 60.085 41.667 9.47 0.00 43.72 6.09
643 647 1.009829 GGCCTTAGCATGACGACTTG 58.990 55.000 0.00 0.00 42.56 3.16
645 649 2.076863 GCCTTAGCATGACGACTTGTT 58.923 47.619 0.00 0.00 39.53 2.83
655 659 3.961182 TGACGACTTGTTGACTGTCTAC 58.039 45.455 14.17 14.17 0.00 2.59
658 662 5.105834 ACGACTTGTTGACTGTCTACTAC 57.894 43.478 19.99 9.12 0.00 2.73
661 665 5.625721 CGACTTGTTGACTGTCTACTACAAG 59.374 44.000 25.59 25.59 46.53 3.16
666 670 7.812690 TGTTGACTGTCTACTACAAGTCTTA 57.187 36.000 19.99 0.00 37.74 2.10
674 678 8.015185 TGTCTACTACAAGTCTTACCAAGTTT 57.985 34.615 0.00 0.00 34.29 2.66
675 679 9.135189 TGTCTACTACAAGTCTTACCAAGTTTA 57.865 33.333 0.00 0.00 34.29 2.01
682 686 8.617290 ACAAGTCTTACCAAGTTTATACAAGG 57.383 34.615 0.00 0.00 0.00 3.61
683 687 8.434392 ACAAGTCTTACCAAGTTTATACAAGGA 58.566 33.333 0.00 0.00 0.00 3.36
684 688 9.280174 CAAGTCTTACCAAGTTTATACAAGGAA 57.720 33.333 0.00 0.00 0.00 3.36
685 689 9.503399 AAGTCTTACCAAGTTTATACAAGGAAG 57.497 33.333 0.00 0.00 0.00 3.46
686 690 8.101419 AGTCTTACCAAGTTTATACAAGGAAGG 58.899 37.037 0.00 0.00 0.00 3.46
687 691 7.336176 GTCTTACCAAGTTTATACAAGGAAGGG 59.664 40.741 0.00 0.00 0.00 3.95
688 692 5.594199 ACCAAGTTTATACAAGGAAGGGT 57.406 39.130 0.00 0.00 0.00 4.34
689 693 5.321927 ACCAAGTTTATACAAGGAAGGGTG 58.678 41.667 0.00 0.00 0.00 4.61
690 694 5.073965 ACCAAGTTTATACAAGGAAGGGTGA 59.926 40.000 0.00 0.00 0.00 4.02
691 695 6.187682 CCAAGTTTATACAAGGAAGGGTGAT 58.812 40.000 0.00 0.00 0.00 3.06
692 696 6.095440 CCAAGTTTATACAAGGAAGGGTGATG 59.905 42.308 0.00 0.00 0.00 3.07
693 697 6.636454 AGTTTATACAAGGAAGGGTGATGA 57.364 37.500 0.00 0.00 0.00 2.92
694 698 6.415573 AGTTTATACAAGGAAGGGTGATGAC 58.584 40.000 0.00 0.00 0.00 3.06
695 699 6.012858 AGTTTATACAAGGAAGGGTGATGACA 60.013 38.462 0.00 0.00 0.00 3.58
696 700 4.927267 ATACAAGGAAGGGTGATGACAA 57.073 40.909 0.00 0.00 0.00 3.18
697 701 2.863809 ACAAGGAAGGGTGATGACAAC 58.136 47.619 0.00 0.00 0.00 3.32
698 702 1.806542 CAAGGAAGGGTGATGACAACG 59.193 52.381 0.00 0.00 34.03 4.10
699 703 0.324943 AGGAAGGGTGATGACAACGG 59.675 55.000 0.00 0.00 34.03 4.44
700 704 1.305930 GGAAGGGTGATGACAACGGC 61.306 60.000 0.00 0.00 34.03 5.68
701 705 0.321653 GAAGGGTGATGACAACGGCT 60.322 55.000 0.00 0.00 34.03 5.52
702 706 0.110486 AAGGGTGATGACAACGGCTT 59.890 50.000 0.00 0.00 34.03 4.35
703 707 0.981183 AGGGTGATGACAACGGCTTA 59.019 50.000 0.00 0.00 34.03 3.09
722 726 1.506493 ATCTTCGGCTCGCATCAATC 58.494 50.000 0.00 0.00 0.00 2.67
726 730 0.811219 TCGGCTCGCATCAATCCTTG 60.811 55.000 0.00 0.00 0.00 3.61
729 733 2.288666 GGCTCGCATCAATCCTTGTAA 58.711 47.619 0.00 0.00 0.00 2.41
739 743 7.428020 GCATCAATCCTTGTAATCATTGCTAA 58.572 34.615 0.00 0.00 0.00 3.09
751 755 8.700973 TGTAATCATTGCTAAGTGGTATACAGA 58.299 33.333 5.01 0.00 0.00 3.41
753 757 8.839310 AATCATTGCTAAGTGGTATACAGATC 57.161 34.615 5.01 0.00 0.00 2.75
754 758 7.603180 TCATTGCTAAGTGGTATACAGATCT 57.397 36.000 5.01 0.00 0.00 2.75
755 759 8.023021 TCATTGCTAAGTGGTATACAGATCTT 57.977 34.615 5.01 5.91 0.00 2.40
760 764 6.702282 GCTAAGTGGTATACAGATCTTGGTTC 59.298 42.308 5.01 0.00 0.00 3.62
768 772 4.602340 ACAGATCTTGGTTCGTTGTACT 57.398 40.909 0.00 0.00 0.00 2.73
769 773 5.717078 ACAGATCTTGGTTCGTTGTACTA 57.283 39.130 0.00 0.00 0.00 1.82
780 784 5.391950 GGTTCGTTGTACTACTATGACCGAA 60.392 44.000 5.91 0.11 0.00 4.30
802 806 9.495754 CCGAAGATGAATAAATCAGAAGTTTTC 57.504 33.333 0.00 0.00 42.53 2.29
917 928 5.163602 CCGACTCTATACAGAAGAACAGCTT 60.164 44.000 0.00 0.00 40.25 3.74
928 939 1.155042 GAACAGCTTGAGGCAGTGAG 58.845 55.000 0.00 0.00 44.79 3.51
931 942 1.141657 ACAGCTTGAGGCAGTGAGAAA 59.858 47.619 0.00 0.00 44.79 2.52
936 947 1.423584 TGAGGCAGTGAGAAAGGACA 58.576 50.000 0.00 0.00 0.00 4.02
937 948 1.768275 TGAGGCAGTGAGAAAGGACAA 59.232 47.619 0.00 0.00 0.00 3.18
938 949 2.147150 GAGGCAGTGAGAAAGGACAAC 58.853 52.381 0.00 0.00 0.00 3.32
951 962 1.569479 GGACAACAGAGCCGAAGCAC 61.569 60.000 0.00 0.00 43.56 4.40
966 977 1.016130 AGCACTTGTCGCATTCCTCG 61.016 55.000 0.00 0.00 0.00 4.63
1221 1232 3.532155 GAGGATCCCTGCGTCGCT 61.532 66.667 19.50 0.00 31.76 4.93
1332 1343 6.015519 CCCTCTTCTACGATTCAGAATCAGAT 60.016 42.308 20.87 9.61 37.78 2.90
1410 1421 2.670148 CCTTCCCGAGACCCCCAAG 61.670 68.421 0.00 0.00 0.00 3.61
1551 1562 1.154282 CGCGTGCTTCTACTCGTCA 60.154 57.895 0.00 0.00 0.00 4.35
1571 1582 0.391661 GAGGCGAGTTCATGGAGCAA 60.392 55.000 0.00 0.00 0.00 3.91
1622 1633 2.584261 ATCGAGATGCAGCCAAGCGT 62.584 55.000 0.00 0.00 37.31 5.07
1650 1661 3.937706 CTGGAAATGCAGTCTACTTCCTG 59.062 47.826 3.72 0.00 37.13 3.86
1659 1670 0.738975 TCTACTTCCTGTGCGATCCG 59.261 55.000 0.00 0.00 0.00 4.18
1741 1752 2.267426 CGGACGTGCATGAGAATAACA 58.733 47.619 14.17 0.00 0.00 2.41
1782 1793 2.267351 CGGCACACTGGGATTTGCA 61.267 57.895 0.00 0.00 36.66 4.08
1803 1814 1.660560 GCGTGCAGGAATCCAGCATT 61.661 55.000 21.99 0.00 46.96 3.56
1812 1823 3.117738 AGGAATCCAGCATTTACCTCTGG 60.118 47.826 0.61 1.29 46.60 3.86
1892 2466 2.498726 GAAGCTGCTCCCCTCTCG 59.501 66.667 1.00 0.00 0.00 4.04
1907 2481 1.005275 CTCGCGCCCTCATGATCAT 60.005 57.895 1.18 1.18 0.00 2.45
1908 2482 1.289800 CTCGCGCCCTCATGATCATG 61.290 60.000 26.79 26.79 40.09 3.07
1930 2504 1.154205 CGATGTGAGTGGATTCGCCC 61.154 60.000 0.00 0.00 34.97 6.13
2025 2599 2.352805 GTGTCCAGCAGGGGAAGG 59.647 66.667 0.00 0.00 39.05 3.46
2049 2623 0.035056 GCACTGCCATTCCCTACACT 60.035 55.000 0.00 0.00 0.00 3.55
2097 2675 6.972328 GCATCGTGCTTGGATATTTTCTTTAA 59.028 34.615 3.20 0.00 40.96 1.52
2101 2679 7.973388 TCGTGCTTGGATATTTTCTTTAATTGG 59.027 33.333 0.00 0.00 0.00 3.16
2124 2702 6.126652 TGGGAATTGGAAATTTTTGGTCAGAA 60.127 34.615 0.00 0.00 0.00 3.02
2129 2707 6.975196 TGGAAATTTTTGGTCAGAATCTCA 57.025 33.333 0.00 0.00 0.00 3.27
2140 2718 5.136828 GGTCAGAATCTCAGAGACCATAGA 58.863 45.833 0.91 0.00 46.15 1.98
2144 2722 6.320926 TCAGAATCTCAGAGACCATAGAACTG 59.679 42.308 0.91 4.44 32.67 3.16
2146 2724 6.894654 AGAATCTCAGAGACCATAGAACTGAA 59.105 38.462 0.91 0.00 37.20 3.02
2147 2725 7.564660 AGAATCTCAGAGACCATAGAACTGAAT 59.435 37.037 0.91 0.00 37.20 2.57
2149 2727 7.575414 TCTCAGAGACCATAGAACTGAATAC 57.425 40.000 0.00 0.00 37.20 1.89
2151 2729 7.500892 TCTCAGAGACCATAGAACTGAATACTC 59.499 40.741 0.00 0.00 37.20 2.59
2152 2730 6.261158 TCAGAGACCATAGAACTGAATACTCG 59.739 42.308 0.00 0.00 35.20 4.18
2154 2732 4.585162 AGACCATAGAACTGAATACTCGGG 59.415 45.833 0.00 0.00 31.52 5.14
2159 2737 6.072397 CCATAGAACTGAATACTCGGGAGTAG 60.072 46.154 13.43 5.04 45.94 2.57
2160 2738 4.857679 AGAACTGAATACTCGGGAGTAGT 58.142 43.478 13.43 11.04 45.94 2.73
2161 2739 5.999044 AGAACTGAATACTCGGGAGTAGTA 58.001 41.667 13.43 3.02 45.94 1.82
2162 2740 6.603224 AGAACTGAATACTCGGGAGTAGTAT 58.397 40.000 13.43 3.65 45.94 2.12
2164 2742 7.560626 AGAACTGAATACTCGGGAGTAGTATTT 59.439 37.037 13.43 3.92 45.62 1.40
2165 2743 7.657023 ACTGAATACTCGGGAGTAGTATTTT 57.343 36.000 13.43 3.60 45.62 1.82
2212 2790 3.334583 TGAAGGTATCTGTGCTGGAAC 57.665 47.619 0.00 0.00 0.00 3.62
2217 2795 3.264193 AGGTATCTGTGCTGGAACATGAA 59.736 43.478 0.00 0.00 38.20 2.57
2226 2804 6.108687 TGTGCTGGAACATGAACTAGATAAG 58.891 40.000 0.00 0.00 38.20 1.73
2227 2805 6.109359 GTGCTGGAACATGAACTAGATAAGT 58.891 40.000 0.00 0.00 37.77 2.24
2228 2806 7.093509 TGTGCTGGAACATGAACTAGATAAGTA 60.094 37.037 0.00 0.00 35.40 2.24
2229 2807 7.928706 GTGCTGGAACATGAACTAGATAAGTAT 59.071 37.037 0.00 0.00 35.40 2.12
2230 2808 9.143155 TGCTGGAACATGAACTAGATAAGTATA 57.857 33.333 0.00 0.00 35.40 1.47
2231 2809 9.982651 GCTGGAACATGAACTAGATAAGTATAA 57.017 33.333 0.00 0.00 35.40 0.98
2234 2812 9.408069 GGAACATGAACTAGATAAGTATAACCG 57.592 37.037 0.00 0.00 37.50 4.44
2308 2886 6.493115 ACACCATCCAAACTCAATCATTTGTA 59.507 34.615 0.00 0.00 34.60 2.41
2309 2887 6.808212 CACCATCCAAACTCAATCATTTGTAC 59.192 38.462 0.00 0.00 34.60 2.90
2310 2888 6.721208 ACCATCCAAACTCAATCATTTGTACT 59.279 34.615 0.00 0.00 34.60 2.73
2311 2889 7.031372 CCATCCAAACTCAATCATTTGTACTG 58.969 38.462 0.00 0.00 34.60 2.74
2312 2890 7.309377 CCATCCAAACTCAATCATTTGTACTGT 60.309 37.037 0.00 0.00 34.60 3.55
2338 2918 4.021192 GTCCCAATTTTCATTCTTCAGGCA 60.021 41.667 0.00 0.00 0.00 4.75
2432 3016 8.347771 TCAATTAGCTGACATGCTTATGATTTC 58.652 33.333 0.00 0.00 43.74 2.17
2530 3120 1.602888 CTGGTGCTGGCTTCTTGCT 60.603 57.895 0.00 0.00 42.39 3.91
2543 3133 5.537874 GCTTCTTGCTTAGCTCGTGCTTC 62.538 52.174 18.16 8.03 43.58 3.86
2564 3156 7.665559 TGCTTCAATAAGTGGTTTATCTTCAGT 59.334 33.333 0.00 0.00 34.99 3.41
2600 3192 1.346068 AGAGAAGAGCAAGTCCGCTTT 59.654 47.619 0.00 0.00 44.01 3.51
2607 3199 3.873952 AGAGCAAGTCCGCTTTATCAATC 59.126 43.478 0.00 0.00 44.01 2.67
2608 3200 3.873952 GAGCAAGTCCGCTTTATCAATCT 59.126 43.478 0.00 0.00 44.01 2.40
2609 3201 5.023533 AGCAAGTCCGCTTTATCAATCTA 57.976 39.130 0.00 0.00 39.99 1.98
2610 3202 5.615289 AGCAAGTCCGCTTTATCAATCTAT 58.385 37.500 0.00 0.00 39.99 1.98
2611 3203 6.759272 AGCAAGTCCGCTTTATCAATCTATA 58.241 36.000 0.00 0.00 39.99 1.31
2612 3204 7.390027 AGCAAGTCCGCTTTATCAATCTATAT 58.610 34.615 0.00 0.00 39.99 0.86
2613 3205 7.332926 AGCAAGTCCGCTTTATCAATCTATATG 59.667 37.037 0.00 0.00 39.99 1.78
2614 3206 7.118390 GCAAGTCCGCTTTATCAATCTATATGT 59.882 37.037 0.00 0.00 31.49 2.29
2615 3207 9.639601 CAAGTCCGCTTTATCAATCTATATGTA 57.360 33.333 0.00 0.00 31.49 2.29
2627 3219 9.793259 ATCAATCTATATGTATTGTTTCCGGTT 57.207 29.630 0.00 0.00 35.16 4.44
2628 3220 9.051679 TCAATCTATATGTATTGTTTCCGGTTG 57.948 33.333 0.00 0.00 35.16 3.77
2629 3221 7.979444 ATCTATATGTATTGTTTCCGGTTGG 57.021 36.000 0.00 0.00 0.00 3.77
2630 3222 4.911514 ATATGTATTGTTTCCGGTTGGC 57.088 40.909 0.00 0.00 34.14 4.52
2631 3223 0.875728 TGTATTGTTTCCGGTTGGCG 59.124 50.000 0.00 0.00 34.14 5.69
2632 3224 0.876399 GTATTGTTTCCGGTTGGCGT 59.124 50.000 0.00 0.00 34.14 5.68
2633 3225 1.267533 GTATTGTTTCCGGTTGGCGTT 59.732 47.619 0.00 0.00 34.14 4.84
2634 3226 0.747852 ATTGTTTCCGGTTGGCGTTT 59.252 45.000 0.00 0.00 34.14 3.60
2635 3227 0.531200 TTGTTTCCGGTTGGCGTTTT 59.469 45.000 0.00 0.00 34.14 2.43
2636 3228 1.386533 TGTTTCCGGTTGGCGTTTTA 58.613 45.000 0.00 0.00 34.14 1.52
2637 3229 1.747355 TGTTTCCGGTTGGCGTTTTAA 59.253 42.857 0.00 0.00 34.14 1.52
2701 3293 5.131067 GTTTCTAGTTGGGAGGTTGAAGTT 58.869 41.667 0.00 0.00 0.00 2.66
2717 3309 6.457799 GGTTGAAGTTAGAAAAGAGAAACGCA 60.458 38.462 0.00 0.00 0.00 5.24
2793 3385 5.873179 ACATGTCAGGTTTACGTTTATGG 57.127 39.130 0.00 0.00 0.00 2.74
2799 3391 2.747446 AGGTTTACGTTTATGGCTGCTG 59.253 45.455 0.00 0.00 0.00 4.41
2864 3456 7.865707 ACCGTTTTCTCTGAATATATTGATGC 58.134 34.615 1.78 0.00 0.00 3.91
2891 3483 4.952262 TCATCAGAAAGCTGCATGTTAC 57.048 40.909 1.02 0.00 42.01 2.50
2944 3544 1.777941 AGATGAGGAAGGTACGGTCC 58.222 55.000 5.50 5.50 37.63 4.46
2948 3548 1.880819 GAGGAAGGTACGGTCCGCAA 61.881 60.000 12.28 0.00 41.39 4.85
2972 3572 2.489938 AATGCGGTTTGAGAAGCCTA 57.510 45.000 0.00 0.00 0.00 3.93
2973 3573 2.489938 ATGCGGTTTGAGAAGCCTAA 57.510 45.000 0.00 0.00 0.00 2.69
2974 3574 2.489938 TGCGGTTTGAGAAGCCTAAT 57.510 45.000 0.00 0.00 0.00 1.73
2975 3575 2.356135 TGCGGTTTGAGAAGCCTAATC 58.644 47.619 0.00 0.00 0.00 1.75
3073 3677 5.647658 ACAAATTCAAGTGTCTGTGTGAAGA 59.352 36.000 0.00 0.00 33.74 2.87
3075 3679 6.949352 AATTCAAGTGTCTGTGTGAAGATT 57.051 33.333 0.00 0.00 33.74 2.40
3090 3694 7.920151 TGTGTGAAGATTCCATTTGTTGTTTAG 59.080 33.333 0.00 0.00 0.00 1.85
3091 3695 7.382218 GTGTGAAGATTCCATTTGTTGTTTAGG 59.618 37.037 0.00 0.00 0.00 2.69
3092 3696 6.366061 GTGAAGATTCCATTTGTTGTTTAGGC 59.634 38.462 0.00 0.00 0.00 3.93
3093 3697 6.267471 TGAAGATTCCATTTGTTGTTTAGGCT 59.733 34.615 0.00 0.00 0.00 4.58
3095 3699 7.961326 AGATTCCATTTGTTGTTTAGGCTAT 57.039 32.000 0.00 0.00 0.00 2.97
3096 3700 7.775120 AGATTCCATTTGTTGTTTAGGCTATG 58.225 34.615 0.00 0.00 0.00 2.23
3097 3701 6.909550 TTCCATTTGTTGTTTAGGCTATGT 57.090 33.333 0.00 0.00 0.00 2.29
3098 3702 6.909550 TCCATTTGTTGTTTAGGCTATGTT 57.090 33.333 0.00 0.00 0.00 2.71
3100 3704 7.151308 TCCATTTGTTGTTTAGGCTATGTTTG 58.849 34.615 0.00 0.00 0.00 2.93
3101 3705 7.014711 TCCATTTGTTGTTTAGGCTATGTTTGA 59.985 33.333 0.00 0.00 0.00 2.69
3102 3706 7.818930 CCATTTGTTGTTTAGGCTATGTTTGAT 59.181 33.333 0.00 0.00 0.00 2.57
3103 3707 9.853555 CATTTGTTGTTTAGGCTATGTTTGATA 57.146 29.630 0.00 0.00 0.00 2.15
3105 3709 8.630054 TTGTTGTTTAGGCTATGTTTGATAGT 57.370 30.769 0.00 0.00 0.00 2.12
3110 3714 9.953565 TGTTTAGGCTATGTTTGATAGTAAAGT 57.046 29.630 0.00 0.00 0.00 2.66
3169 3773 4.882842 TTTCTATAGGCGCATGATACCA 57.117 40.909 10.83 0.00 0.00 3.25
3170 3774 3.868757 TCTATAGGCGCATGATACCAC 57.131 47.619 10.83 0.00 0.00 4.16
3171 3775 3.161866 TCTATAGGCGCATGATACCACA 58.838 45.455 10.83 0.00 0.00 4.17
3172 3776 2.462456 ATAGGCGCATGATACCACAG 57.538 50.000 10.83 0.00 0.00 3.66
3173 3777 1.119684 TAGGCGCATGATACCACAGT 58.880 50.000 10.83 0.00 0.00 3.55
3174 3778 1.119684 AGGCGCATGATACCACAGTA 58.880 50.000 10.83 0.00 0.00 2.74
3176 3780 2.104792 AGGCGCATGATACCACAGTAAT 59.895 45.455 10.83 0.00 30.59 1.89
3177 3781 3.323691 AGGCGCATGATACCACAGTAATA 59.676 43.478 10.83 0.00 30.59 0.98
3179 3783 4.695455 GGCGCATGATACCACAGTAATAAT 59.305 41.667 10.83 0.00 30.59 1.28
3180 3784 5.872617 GGCGCATGATACCACAGTAATAATA 59.127 40.000 10.83 0.00 30.59 0.98
3181 3785 6.538742 GGCGCATGATACCACAGTAATAATAT 59.461 38.462 10.83 0.00 30.59 1.28
3182 3786 7.709182 GGCGCATGATACCACAGTAATAATATA 59.291 37.037 10.83 0.00 30.59 0.86
3183 3787 9.261180 GCGCATGATACCACAGTAATAATATAT 57.739 33.333 0.30 0.00 30.59 0.86
3213 3817 9.975218 AGTATTTTGGAGTATTTGGAATACTGT 57.025 29.630 15.80 0.00 37.41 3.55
3217 3821 9.444600 TTTTGGAGTATTTGGAATACTGTAGAC 57.555 33.333 15.80 3.87 35.20 2.59
3218 3822 7.120923 TGGAGTATTTGGAATACTGTAGACC 57.879 40.000 15.80 11.34 35.20 3.85
3219 3823 6.901300 TGGAGTATTTGGAATACTGTAGACCT 59.099 38.462 15.80 0.00 35.20 3.85
3220 3824 7.147724 TGGAGTATTTGGAATACTGTAGACCTG 60.148 40.741 15.80 0.00 35.20 4.00
3221 3825 7.147707 GGAGTATTTGGAATACTGTAGACCTGT 60.148 40.741 15.80 0.00 35.20 4.00
3222 3826 8.147244 AGTATTTGGAATACTGTAGACCTGTT 57.853 34.615 11.42 0.00 33.91 3.16
3223 3827 8.603304 AGTATTTGGAATACTGTAGACCTGTTT 58.397 33.333 11.42 0.00 33.91 2.83
3225 3829 5.160607 TGGAATACTGTAGACCTGTTTGG 57.839 43.478 12.11 0.00 42.93 3.28
3227 3831 4.323562 GGAATACTGTAGACCTGTTTGGCT 60.324 45.833 0.00 0.00 40.22 4.75
3228 3832 5.105064 GGAATACTGTAGACCTGTTTGGCTA 60.105 44.000 0.00 0.00 40.22 3.93
3230 3834 3.507411 ACTGTAGACCTGTTTGGCTAGA 58.493 45.455 0.00 0.00 40.22 2.43
3231 3835 3.901844 ACTGTAGACCTGTTTGGCTAGAA 59.098 43.478 0.00 0.00 40.22 2.10
3232 3836 4.246458 CTGTAGACCTGTTTGGCTAGAAC 58.754 47.826 0.00 0.00 40.22 3.01
3233 3837 3.901844 TGTAGACCTGTTTGGCTAGAACT 59.098 43.478 0.00 0.00 40.22 3.01
3234 3838 4.347000 TGTAGACCTGTTTGGCTAGAACTT 59.653 41.667 0.00 0.00 40.22 2.66
3235 3839 5.541101 TGTAGACCTGTTTGGCTAGAACTTA 59.459 40.000 0.00 0.00 40.22 2.24
3236 3840 5.763876 AGACCTGTTTGGCTAGAACTTAT 57.236 39.130 0.00 0.00 40.22 1.73
3238 3842 7.439108 AGACCTGTTTGGCTAGAACTTATAT 57.561 36.000 0.00 0.00 40.22 0.86
3239 3843 7.275920 AGACCTGTTTGGCTAGAACTTATATG 58.724 38.462 0.00 0.00 40.22 1.78
3240 3844 6.958767 ACCTGTTTGGCTAGAACTTATATGT 58.041 36.000 0.00 0.00 40.22 2.29
3241 3845 8.086143 ACCTGTTTGGCTAGAACTTATATGTA 57.914 34.615 0.00 0.00 40.22 2.29
3243 3847 9.561069 CCTGTTTGGCTAGAACTTATATGTAAT 57.439 33.333 0.00 0.00 0.00 1.89
3245 3849 9.899661 TGTTTGGCTAGAACTTATATGTAATGT 57.100 29.630 0.00 0.00 0.00 2.71
3261 3865 6.978343 TGTAATGTAAATTCGCAGTTAGCT 57.022 33.333 0.00 0.00 42.61 3.32
3262 3866 6.771076 TGTAATGTAAATTCGCAGTTAGCTG 58.229 36.000 1.58 1.58 45.23 4.24
3269 5410 5.682943 AATTCGCAGTTAGCTGTTTGTTA 57.317 34.783 8.48 0.00 44.32 2.41
3270 5411 5.682943 ATTCGCAGTTAGCTGTTTGTTAA 57.317 34.783 8.48 0.00 44.32 2.01
3274 5415 4.670621 CGCAGTTAGCTGTTTGTTAACAAG 59.329 41.667 19.72 10.77 43.33 3.16
3276 5417 5.681543 GCAGTTAGCTGTTTGTTAACAAGTC 59.318 40.000 19.72 16.71 43.33 3.01
3278 5419 3.334272 AGCTGTTTGTTAACAAGTCGC 57.666 42.857 19.72 20.31 43.33 5.19
3282 5423 4.259253 GCTGTTTGTTAACAAGTCGCAAAC 60.259 41.667 19.72 13.94 43.33 2.93
3284 5425 5.108572 GTTTGTTAACAAGTCGCAAACAC 57.891 39.130 19.72 9.23 44.59 3.32
3303 5444 4.178255 CGCGTACGCAACTCGCTG 62.178 66.667 36.44 16.22 46.31 5.18
3305 5446 3.055905 GCGTACGCAACTCGCTGAC 62.056 63.158 33.90 0.00 45.29 3.51
3306 5447 2.434134 CGTACGCAACTCGCTGACC 61.434 63.158 0.52 0.00 43.23 4.02
3307 5448 2.126618 TACGCAACTCGCTGACCG 60.127 61.111 0.00 0.00 43.23 4.79
3309 5450 2.410638 TACGCAACTCGCTGACCGTT 62.411 55.000 0.00 0.00 43.23 4.44
3310 5451 2.551270 GCAACTCGCTGACCGTTG 59.449 61.111 0.00 0.00 40.59 4.10
3311 5452 2.551270 CAACTCGCTGACCGTTGC 59.449 61.111 0.00 0.00 38.35 4.17
3314 5455 0.037697 AACTCGCTGACCGTTGCATA 60.038 50.000 0.00 0.00 38.35 3.14
3315 5456 0.736325 ACTCGCTGACCGTTGCATAC 60.736 55.000 0.00 0.00 38.35 2.39
3316 5457 0.735978 CTCGCTGACCGTTGCATACA 60.736 55.000 0.00 0.00 38.35 2.29
3317 5458 0.735978 TCGCTGACCGTTGCATACAG 60.736 55.000 0.00 0.00 38.35 2.74
3318 5459 1.425428 GCTGACCGTTGCATACAGC 59.575 57.895 12.52 12.52 44.88 4.40
3334 5475 3.165606 AGCATACTGAGCAACCAGC 57.834 52.632 0.00 0.00 46.19 4.85
3345 5753 1.808531 GCAACCAGCTGCATCCACAA 61.809 55.000 8.66 0.00 42.17 3.33
3348 5756 0.178981 ACCAGCTGCATCCACAAACT 60.179 50.000 8.66 0.00 0.00 2.66
3351 5759 1.610038 CAGCTGCATCCACAAACTTGA 59.390 47.619 0.00 0.00 0.00 3.02
3354 5762 2.653890 CTGCATCCACAAACTTGAACG 58.346 47.619 0.00 0.00 0.00 3.95
3356 5764 1.930371 GCATCCACAAACTTGAACGGC 60.930 52.381 0.00 0.00 0.00 5.68
3357 5765 0.958822 ATCCACAAACTTGAACGGCC 59.041 50.000 0.00 0.00 0.00 6.13
3363 5771 0.958822 AAACTTGAACGGCCATGGAC 59.041 50.000 18.40 13.35 0.00 4.02
3368 5776 1.816074 TGAACGGCCATGGACTAAAC 58.184 50.000 18.40 4.92 0.00 2.01
3369 5777 1.072489 TGAACGGCCATGGACTAAACA 59.928 47.619 18.40 7.74 0.00 2.83
3372 5780 2.802719 ACGGCCATGGACTAAACATTT 58.197 42.857 18.40 0.00 0.00 2.32
3373 5781 3.958018 ACGGCCATGGACTAAACATTTA 58.042 40.909 18.40 0.00 0.00 1.40
3375 5783 4.578928 ACGGCCATGGACTAAACATTTATC 59.421 41.667 18.40 0.00 0.00 1.75
3378 5786 5.221244 GGCCATGGACTAAACATTTATCCAC 60.221 44.000 18.40 0.00 42.12 4.02
3379 5787 5.359576 GCCATGGACTAAACATTTATCCACA 59.640 40.000 18.40 1.64 42.12 4.17
3380 5788 6.127479 GCCATGGACTAAACATTTATCCACAA 60.127 38.462 18.40 0.00 42.12 3.33
3381 5789 7.578571 GCCATGGACTAAACATTTATCCACAAA 60.579 37.037 18.40 0.00 42.12 2.83
3383 5791 6.919721 TGGACTAAACATTTATCCACAAAGC 58.080 36.000 9.57 0.00 34.50 3.51
3386 5794 8.398665 GGACTAAACATTTATCCACAAAGCTAG 58.601 37.037 0.00 0.00 0.00 3.42
3387 5795 7.762382 ACTAAACATTTATCCACAAAGCTAGC 58.238 34.615 6.62 6.62 0.00 3.42
3389 5797 6.840780 AACATTTATCCACAAAGCTAGCTT 57.159 33.333 24.42 24.42 37.98 3.74
3390 5798 7.938140 AACATTTATCCACAAAGCTAGCTTA 57.062 32.000 29.52 14.60 34.84 3.09
3391 5799 7.321745 ACATTTATCCACAAAGCTAGCTTAC 57.678 36.000 29.52 0.00 34.84 2.34
3393 5801 7.393234 ACATTTATCCACAAAGCTAGCTTACAA 59.607 33.333 29.52 14.08 34.84 2.41
3394 5802 6.737254 TTATCCACAAAGCTAGCTTACAAC 57.263 37.500 29.52 0.00 34.84 3.32
3395 5803 4.351874 TCCACAAAGCTAGCTTACAACT 57.648 40.909 29.52 11.59 34.84 3.16
3396 5804 4.714632 TCCACAAAGCTAGCTTACAACTT 58.285 39.130 29.52 10.82 34.84 2.66
3398 5806 5.932303 TCCACAAAGCTAGCTTACAACTTAG 59.068 40.000 29.52 13.16 34.84 2.18
3400 5808 5.179368 CACAAAGCTAGCTTACAACTTAGCA 59.821 40.000 29.52 0.00 39.85 3.49
3401 5809 5.940470 ACAAAGCTAGCTTACAACTTAGCAT 59.060 36.000 29.52 7.22 39.85 3.79
3402 5810 7.064609 CACAAAGCTAGCTTACAACTTAGCATA 59.935 37.037 29.52 0.00 39.85 3.14
3404 5812 7.778470 AAGCTAGCTTACAACTTAGCATAAG 57.222 36.000 28.36 0.00 39.85 1.73
3405 5813 7.113658 AGCTAGCTTACAACTTAGCATAAGA 57.886 36.000 12.68 0.00 39.85 2.10
3406 5814 7.206687 AGCTAGCTTACAACTTAGCATAAGAG 58.793 38.462 12.68 0.00 39.85 2.85
3407 5815 6.422400 GCTAGCTTACAACTTAGCATAAGAGG 59.578 42.308 7.70 0.00 39.85 3.69
3408 5816 6.546428 AGCTTACAACTTAGCATAAGAGGA 57.454 37.500 3.64 0.00 39.85 3.71
3409 5817 6.578023 AGCTTACAACTTAGCATAAGAGGAG 58.422 40.000 3.64 1.48 39.85 3.69
3410 5818 5.755861 GCTTACAACTTAGCATAAGAGGAGG 59.244 44.000 3.64 0.00 37.35 4.30
3411 5819 4.143986 ACAACTTAGCATAAGAGGAGGC 57.856 45.455 3.64 0.00 0.00 4.70
3414 5822 2.103941 ACTTAGCATAAGAGGAGGCAGC 59.896 50.000 3.64 0.00 0.00 5.25
3415 5823 2.094100 TAGCATAAGAGGAGGCAGCT 57.906 50.000 0.00 0.00 34.84 4.24
3416 5824 0.469070 AGCATAAGAGGAGGCAGCTG 59.531 55.000 10.11 10.11 0.00 4.24
3420 5828 1.944177 TAAGAGGAGGCAGCTGAACT 58.056 50.000 20.43 14.84 0.00 3.01
3423 5831 1.190643 GAGGAGGCAGCTGAACTAGT 58.809 55.000 20.43 5.08 0.00 2.57
3424 5832 1.136110 GAGGAGGCAGCTGAACTAGTC 59.864 57.143 20.43 10.44 0.00 2.59
3425 5833 0.176910 GGAGGCAGCTGAACTAGTCC 59.823 60.000 20.43 7.07 0.00 3.85
3426 5834 0.179124 GAGGCAGCTGAACTAGTCCG 60.179 60.000 20.43 0.00 0.00 4.79
3428 5836 0.246635 GGCAGCTGAACTAGTCCGAA 59.753 55.000 20.43 0.00 0.00 4.30
3429 5837 1.634702 GCAGCTGAACTAGTCCGAAG 58.365 55.000 20.43 0.00 0.00 3.79
3430 5838 1.067495 GCAGCTGAACTAGTCCGAAGT 60.067 52.381 20.43 0.00 0.00 3.01
3432 5840 1.067495 AGCTGAACTAGTCCGAAGTGC 60.067 52.381 0.00 0.00 0.00 4.40
3433 5841 1.997669 CTGAACTAGTCCGAAGTGCC 58.002 55.000 0.00 0.00 0.00 5.01
3434 5842 1.272490 CTGAACTAGTCCGAAGTGCCA 59.728 52.381 0.00 0.00 0.00 4.92
3435 5843 1.000506 TGAACTAGTCCGAAGTGCCAC 59.999 52.381 0.00 0.00 0.00 5.01
3438 5846 0.737715 CTAGTCCGAAGTGCCACTGC 60.738 60.000 0.00 0.00 38.26 4.40
3477 5885 4.068302 GGTCTTCCGCGTCGTTAG 57.932 61.111 4.92 0.00 0.00 2.34
3478 5886 1.211190 GGTCTTCCGCGTCGTTAGT 59.789 57.895 4.92 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.651240 CTCTCCACATTGCCGGCAAG 61.651 60.000 41.38 33.21 39.47 4.01
25 26 1.450312 GGACTCTCCACATTGCCGG 60.450 63.158 0.00 0.00 36.28 6.13
26 27 1.811266 CGGACTCTCCACATTGCCG 60.811 63.158 0.00 0.00 35.91 5.69
57 58 2.795231 CAGGATTTCTGGGAAGCAGA 57.205 50.000 0.00 0.00 39.76 4.26
67 68 3.683802 CTTGAGCAAGACCAGGATTTCT 58.316 45.455 4.22 0.00 40.79 2.52
112 113 1.751924 AGGCAGGTCATCGAGAAGTAC 59.248 52.381 0.00 0.00 0.00 2.73
120 121 1.599047 ACCTTCAGGCAGGTCATCG 59.401 57.895 0.00 0.00 44.63 3.84
128 129 4.023291 ACTTTGAAAAAGACCTTCAGGCA 58.977 39.130 6.73 0.00 39.32 4.75
160 161 2.487934 CCCAAGACACTCAAGACACAG 58.512 52.381 0.00 0.00 0.00 3.66
197 198 2.036475 CTCTGTGTCGGGAAGGATATGG 59.964 54.545 0.00 0.00 0.00 2.74
209 210 0.882042 AAGTTGCAGCCTCTGTGTCG 60.882 55.000 0.00 0.00 33.43 4.35
211 212 1.450531 GCAAGTTGCAGCCTCTGTGT 61.451 55.000 22.90 0.00 44.26 3.72
232 233 1.688187 ATACCCCTGACCACGGACC 60.688 63.158 0.00 0.00 0.00 4.46
244 245 1.451387 CAGTGGGCGTTCATACCCC 60.451 63.158 0.00 0.00 46.43 4.95
255 256 0.949105 CCGTGTAGTGAACAGTGGGC 60.949 60.000 0.00 0.00 39.29 5.36
273 274 0.758734 TCGGGATCCATCATGTGTCC 59.241 55.000 15.23 0.00 0.00 4.02
279 280 0.767375 CAAGGGTCGGGATCCATCAT 59.233 55.000 15.23 0.00 32.73 2.45
282 283 2.221918 GACAAGGGTCGGGATCCAT 58.778 57.895 15.23 0.00 32.73 3.41
302 303 4.402474 ACATATAAAACAAAGCCCTCCAGC 59.598 41.667 0.00 0.00 0.00 4.85
304 305 5.826643 AGACATATAAAACAAAGCCCTCCA 58.173 37.500 0.00 0.00 0.00 3.86
309 310 9.476202 AACTCAAAAGACATATAAAACAAAGCC 57.524 29.630 0.00 0.00 0.00 4.35
342 343 5.734720 TCTTCATCAGTAGGACACAAATCC 58.265 41.667 0.00 0.00 39.28 3.01
355 356 5.646793 CCTTCATTGTCACATCTTCATCAGT 59.353 40.000 0.00 0.00 0.00 3.41
472 473 2.160822 ATCAAATCCTGCGAGATCCG 57.839 50.000 0.00 0.00 42.21 4.18
488 489 3.497763 CCACCAAAGACAACCACCTATCA 60.498 47.826 0.00 0.00 0.00 2.15
490 491 2.714250 TCCACCAAAGACAACCACCTAT 59.286 45.455 0.00 0.00 0.00 2.57
497 498 4.499696 CCAAACAGATCCACCAAAGACAAC 60.500 45.833 0.00 0.00 0.00 3.32
516 517 2.105821 ACGGACAAAGACTGGATCCAAA 59.894 45.455 17.00 0.00 0.00 3.28
534 535 2.774951 GACACGCGAATGTCGACGG 61.775 63.158 15.93 1.19 43.74 4.79
535 536 2.681666 GACACGCGAATGTCGACG 59.318 61.111 15.93 7.29 43.74 5.12
547 548 5.063944 CAGAAAGATCCAACCATAAGACACG 59.936 44.000 0.00 0.00 0.00 4.49
555 556 5.882557 GTGTATGTCAGAAAGATCCAACCAT 59.117 40.000 0.00 0.00 0.00 3.55
556 557 5.013079 AGTGTATGTCAGAAAGATCCAACCA 59.987 40.000 0.00 0.00 0.00 3.67
566 567 6.808704 CGATGAAGAGAAGTGTATGTCAGAAA 59.191 38.462 0.00 0.00 0.00 2.52
569 570 5.039984 CCGATGAAGAGAAGTGTATGTCAG 58.960 45.833 0.00 0.00 0.00 3.51
570 571 4.678044 GCCGATGAAGAGAAGTGTATGTCA 60.678 45.833 0.00 0.00 0.00 3.58
573 574 3.785486 TGCCGATGAAGAGAAGTGTATG 58.215 45.455 0.00 0.00 0.00 2.39
574 575 4.471904 TTGCCGATGAAGAGAAGTGTAT 57.528 40.909 0.00 0.00 0.00 2.29
578 579 8.562892 CAATAAATATTGCCGATGAAGAGAAGT 58.437 33.333 0.54 0.00 36.94 3.01
613 614 1.071471 CTAAGGCCCCATACCAGCG 59.929 63.158 0.00 0.00 0.00 5.18
615 616 0.773644 ATGCTAAGGCCCCATACCAG 59.226 55.000 0.00 0.00 37.74 4.00
643 647 7.083230 GGTAAGACTTGTAGTAGACAGTCAAC 58.917 42.308 2.66 0.00 39.88 3.18
645 649 6.301486 TGGTAAGACTTGTAGTAGACAGTCA 58.699 40.000 2.66 0.00 39.88 3.41
658 662 8.842358 TCCTTGTATAAACTTGGTAAGACTTG 57.158 34.615 0.00 0.00 0.00 3.16
661 665 7.336176 CCCTTCCTTGTATAAACTTGGTAAGAC 59.664 40.741 0.00 0.00 0.00 3.01
666 670 5.073965 TCACCCTTCCTTGTATAAACTTGGT 59.926 40.000 0.00 0.00 0.00 3.67
674 678 5.625886 CGTTGTCATCACCCTTCCTTGTATA 60.626 44.000 0.00 0.00 0.00 1.47
675 679 4.589908 GTTGTCATCACCCTTCCTTGTAT 58.410 43.478 0.00 0.00 0.00 2.29
676 680 3.556213 CGTTGTCATCACCCTTCCTTGTA 60.556 47.826 0.00 0.00 0.00 2.41
677 681 2.810400 CGTTGTCATCACCCTTCCTTGT 60.810 50.000 0.00 0.00 0.00 3.16
678 682 1.806542 CGTTGTCATCACCCTTCCTTG 59.193 52.381 0.00 0.00 0.00 3.61
679 683 1.271379 CCGTTGTCATCACCCTTCCTT 60.271 52.381 0.00 0.00 0.00 3.36
680 684 0.324943 CCGTTGTCATCACCCTTCCT 59.675 55.000 0.00 0.00 0.00 3.36
681 685 1.305930 GCCGTTGTCATCACCCTTCC 61.306 60.000 0.00 0.00 0.00 3.46
682 686 0.321653 AGCCGTTGTCATCACCCTTC 60.322 55.000 0.00 0.00 0.00 3.46
683 687 0.110486 AAGCCGTTGTCATCACCCTT 59.890 50.000 0.00 0.00 0.00 3.95
684 688 0.981183 TAAGCCGTTGTCATCACCCT 59.019 50.000 0.00 0.00 0.00 4.34
685 689 1.940613 GATAAGCCGTTGTCATCACCC 59.059 52.381 0.00 0.00 0.00 4.61
686 690 2.906354 AGATAAGCCGTTGTCATCACC 58.094 47.619 0.00 0.00 0.00 4.02
687 691 3.000322 CGAAGATAAGCCGTTGTCATCAC 60.000 47.826 0.00 0.00 0.00 3.06
688 692 3.186909 CGAAGATAAGCCGTTGTCATCA 58.813 45.455 0.00 0.00 0.00 3.07
689 693 2.540101 CCGAAGATAAGCCGTTGTCATC 59.460 50.000 0.00 0.00 0.00 2.92
690 694 2.550978 CCGAAGATAAGCCGTTGTCAT 58.449 47.619 0.00 0.00 0.00 3.06
691 695 2.004583 CCGAAGATAAGCCGTTGTCA 57.995 50.000 0.00 0.00 0.00 3.58
692 696 0.651031 GCCGAAGATAAGCCGTTGTC 59.349 55.000 0.00 0.00 0.00 3.18
693 697 0.249398 AGCCGAAGATAAGCCGTTGT 59.751 50.000 0.00 0.00 0.00 3.32
694 698 0.931005 GAGCCGAAGATAAGCCGTTG 59.069 55.000 0.00 0.00 0.00 4.10
695 699 0.527817 CGAGCCGAAGATAAGCCGTT 60.528 55.000 0.00 0.00 0.00 4.44
696 700 1.065928 CGAGCCGAAGATAAGCCGT 59.934 57.895 0.00 0.00 0.00 5.68
697 701 2.303676 GCGAGCCGAAGATAAGCCG 61.304 63.158 0.00 0.00 0.00 5.52
698 702 0.601311 ATGCGAGCCGAAGATAAGCC 60.601 55.000 0.00 0.00 0.00 4.35
699 703 0.787183 GATGCGAGCCGAAGATAAGC 59.213 55.000 0.00 0.00 0.00 3.09
700 704 2.140065 TGATGCGAGCCGAAGATAAG 57.860 50.000 0.00 0.00 0.00 1.73
701 705 2.595124 TTGATGCGAGCCGAAGATAA 57.405 45.000 0.00 0.00 0.00 1.75
702 706 2.610479 GGATTGATGCGAGCCGAAGATA 60.610 50.000 0.00 0.00 0.00 1.98
703 707 1.506493 GATTGATGCGAGCCGAAGAT 58.494 50.000 0.00 0.00 0.00 2.40
722 726 7.807977 ATACCACTTAGCAATGATTACAAGG 57.192 36.000 0.00 0.00 0.00 3.61
726 730 9.712305 ATCTGTATACCACTTAGCAATGATTAC 57.288 33.333 0.00 0.00 0.00 1.89
729 733 8.200024 AGATCTGTATACCACTTAGCAATGAT 57.800 34.615 0.00 0.00 0.00 2.45
739 743 4.710375 ACGAACCAAGATCTGTATACCACT 59.290 41.667 0.00 0.00 0.00 4.00
751 755 7.256286 GTCATAGTAGTACAACGAACCAAGAT 58.744 38.462 2.52 0.00 0.00 2.40
753 757 5.803967 GGTCATAGTAGTACAACGAACCAAG 59.196 44.000 2.52 0.00 0.00 3.61
754 758 5.619757 CGGTCATAGTAGTACAACGAACCAA 60.620 44.000 2.52 0.00 0.00 3.67
755 759 4.142622 CGGTCATAGTAGTACAACGAACCA 60.143 45.833 2.52 0.00 0.00 3.67
760 764 5.475273 TCTTCGGTCATAGTAGTACAACG 57.525 43.478 2.52 0.00 0.00 4.10
768 772 9.914131 CTGATTTATTCATCTTCGGTCATAGTA 57.086 33.333 0.00 0.00 32.72 1.82
769 773 8.642432 TCTGATTTATTCATCTTCGGTCATAGT 58.358 33.333 0.00 0.00 32.72 2.12
836 840 9.091784 GAGTGCATCTTTCTTTTCTTTCTTTTT 57.908 29.630 0.00 0.00 0.00 1.94
837 841 7.708322 GGAGTGCATCTTTCTTTTCTTTCTTTT 59.292 33.333 0.00 0.00 0.00 2.27
838 842 7.147846 TGGAGTGCATCTTTCTTTTCTTTCTTT 60.148 33.333 0.00 0.00 0.00 2.52
839 843 6.322201 TGGAGTGCATCTTTCTTTTCTTTCTT 59.678 34.615 0.00 0.00 0.00 2.52
840 844 5.829924 TGGAGTGCATCTTTCTTTTCTTTCT 59.170 36.000 0.00 0.00 0.00 2.52
841 845 6.016777 TCTGGAGTGCATCTTTCTTTTCTTTC 60.017 38.462 0.00 0.00 0.00 2.62
917 928 1.423584 TGTCCTTTCTCACTGCCTCA 58.576 50.000 0.00 0.00 0.00 3.86
928 939 1.801178 CTTCGGCTCTGTTGTCCTTTC 59.199 52.381 0.00 0.00 0.00 2.62
931 942 1.004440 GCTTCGGCTCTGTTGTCCT 60.004 57.895 0.00 0.00 38.08 3.85
936 947 0.179045 ACAAGTGCTTCGGCTCTGTT 60.179 50.000 0.00 0.00 42.95 3.16
937 948 0.601311 GACAAGTGCTTCGGCTCTGT 60.601 55.000 0.00 0.00 42.95 3.41
938 949 1.621301 CGACAAGTGCTTCGGCTCTG 61.621 60.000 0.00 0.00 42.95 3.35
951 962 1.391485 CAAGACGAGGAATGCGACAAG 59.609 52.381 0.00 0.00 0.00 3.16
966 977 1.671379 GCTGGGGACGGAACAAGAC 60.671 63.158 0.00 0.00 39.98 3.01
1086 1097 3.997064 CTTGGAGACGAGGCAGGCG 62.997 68.421 0.00 0.00 38.28 5.52
1221 1232 4.137872 GCGGTGGGGACGAATCGA 62.138 66.667 10.55 0.00 0.00 3.59
1332 1343 1.293498 GAACTCAGCGGGCTTCTGA 59.707 57.895 8.47 8.47 38.16 3.27
1436 1447 4.451150 GGTCGCAGCCATCCACGA 62.451 66.667 0.00 0.00 0.00 4.35
1506 1517 0.030705 TCCAGATCCCCTCCTCCTTG 60.031 60.000 0.00 0.00 0.00 3.61
1551 1562 1.260538 TGCTCCATGAACTCGCCTCT 61.261 55.000 0.00 0.00 0.00 3.69
1571 1582 1.532868 GATGCTCAACAAAGCTCGTGT 59.467 47.619 0.00 0.00 42.94 4.49
1659 1670 1.392853 CACTGCAGAATTCGAGTGCTC 59.607 52.381 23.35 0.00 38.09 4.26
1665 1676 0.038251 AGTCGCACTGCAGAATTCGA 60.038 50.000 23.35 18.54 0.00 3.71
1677 1688 1.082756 CTCGCCAACAAAGTCGCAC 60.083 57.895 0.00 0.00 0.00 5.34
1741 1752 1.338337 CTCCGCTGTTATGAGGACGAT 59.662 52.381 0.00 0.00 32.62 3.73
1782 1793 2.270205 CTGGATTCCTGCACGCCT 59.730 61.111 3.95 0.00 0.00 5.52
1803 1814 2.838202 GACTTCCATGGACCAGAGGTAA 59.162 50.000 15.91 0.00 35.25 2.85
1812 1823 0.249489 CGGGATCGACTTCCATGGAC 60.249 60.000 15.91 1.76 37.53 4.02
1845 1856 1.068055 ACGACTCGATGTTGTACCCAC 60.068 52.381 5.20 0.00 41.27 4.61
1892 2466 2.623915 GGCATGATCATGAGGGCGC 61.624 63.158 34.65 19.92 41.20 6.53
1907 2481 0.107703 GAATCCACTCACATCGGGCA 60.108 55.000 0.00 0.00 0.00 5.36
1908 2482 1.154205 CGAATCCACTCACATCGGGC 61.154 60.000 0.00 0.00 0.00 6.13
1930 2504 2.141122 AAAATGACACCGGCGCCTTG 62.141 55.000 26.68 22.97 0.00 3.61
1936 2510 0.165944 CTCACGAAAATGACACCGGC 59.834 55.000 0.00 0.00 0.00 6.13
1937 2511 0.796312 CCTCACGAAAATGACACCGG 59.204 55.000 0.00 0.00 0.00 5.28
2025 2599 2.048603 GGGAATGGCAGTGCAGACC 61.049 63.158 18.61 13.51 0.00 3.85
2049 2623 5.535406 GCTAATACCTGGAGTGTAGAAGCTA 59.465 44.000 0.00 0.00 31.89 3.32
2097 2675 6.608922 TGACCAAAAATTTCCAATTCCCAAT 58.391 32.000 0.00 0.00 0.00 3.16
2101 2679 7.879677 AGATTCTGACCAAAAATTTCCAATTCC 59.120 33.333 0.00 0.00 0.00 3.01
2109 2687 7.040132 GGTCTCTGAGATTCTGACCAAAAATTT 60.040 37.037 11.07 0.00 44.59 1.82
2124 2702 8.004215 AGTATTCAGTTCTATGGTCTCTGAGAT 58.996 37.037 11.07 0.00 36.68 2.75
2129 2707 5.533154 CCGAGTATTCAGTTCTATGGTCTCT 59.467 44.000 0.00 0.00 0.00 3.10
2140 2718 7.657023 AAATACTACTCCCGAGTATTCAGTT 57.343 36.000 5.07 0.00 45.23 3.16
2165 2743 9.342308 TCCATATTTTTATGTTGCCAACAAAAA 57.658 25.926 15.17 16.72 45.86 1.94
2195 2773 2.840038 TCATGTTCCAGCACAGATACCT 59.160 45.455 0.00 0.00 0.00 3.08
2212 2790 8.118976 TCCCGGTTATACTTATCTAGTTCATG 57.881 38.462 0.00 0.00 38.33 3.07
2217 2795 7.562821 ACAAGTTCCCGGTTATACTTATCTAGT 59.437 37.037 0.00 0.00 41.04 2.57
2226 2804 7.712205 ACAACATATACAAGTTCCCGGTTATAC 59.288 37.037 0.00 0.00 0.00 1.47
2227 2805 7.794041 ACAACATATACAAGTTCCCGGTTATA 58.206 34.615 0.00 0.00 0.00 0.98
2228 2806 6.655930 ACAACATATACAAGTTCCCGGTTAT 58.344 36.000 0.00 0.00 0.00 1.89
2229 2807 6.052405 ACAACATATACAAGTTCCCGGTTA 57.948 37.500 0.00 0.00 0.00 2.85
2230 2808 4.913784 ACAACATATACAAGTTCCCGGTT 58.086 39.130 0.00 0.00 0.00 4.44
2231 2809 4.224370 AGACAACATATACAAGTTCCCGGT 59.776 41.667 0.00 0.00 0.00 5.28
2232 2810 4.766375 AGACAACATATACAAGTTCCCGG 58.234 43.478 0.00 0.00 0.00 5.73
2233 2811 4.809426 GGAGACAACATATACAAGTTCCCG 59.191 45.833 0.00 0.00 0.00 5.14
2234 2812 5.990668 AGGAGACAACATATACAAGTTCCC 58.009 41.667 0.00 0.00 0.00 3.97
2267 2845 2.371841 TGGTGTGCTTCAGGTTGAGTAT 59.628 45.455 0.00 0.00 0.00 2.12
2308 2886 7.451255 TGAAGAATGAAAATTGGGACATACAGT 59.549 33.333 0.00 0.00 39.30 3.55
2309 2887 7.829725 TGAAGAATGAAAATTGGGACATACAG 58.170 34.615 0.00 0.00 39.30 2.74
2310 2888 7.093814 CCTGAAGAATGAAAATTGGGACATACA 60.094 37.037 0.00 0.00 39.30 2.29
2311 2889 7.260603 CCTGAAGAATGAAAATTGGGACATAC 58.739 38.462 0.00 0.00 39.30 2.39
2312 2890 6.127366 GCCTGAAGAATGAAAATTGGGACATA 60.127 38.462 0.00 0.00 39.30 2.29
2338 2918 4.186159 GCATGCCATTGCTAAAACTTCAT 58.814 39.130 6.36 0.00 39.57 2.57
2432 3016 3.931468 AGCACGATCTGAAAAGATCACAG 59.069 43.478 14.33 0.00 43.51 3.66
2471 3061 3.566742 TGTATCAATGCATCATCACTGGC 59.433 43.478 0.00 0.00 0.00 4.85
2543 3133 8.567948 ACACAACTGAAGATAAACCACTTATTG 58.432 33.333 0.00 0.00 29.89 1.90
2564 3156 8.418662 TGCTCTTCTCTTACTTAAACTACACAA 58.581 33.333 0.00 0.00 0.00 3.33
2577 3169 2.094442 AGCGGACTTGCTCTTCTCTTAC 60.094 50.000 0.00 0.00 42.95 2.34
2607 3199 5.333798 CGCCAACCGGAAACAATACATATAG 60.334 44.000 9.46 0.00 0.00 1.31
2608 3200 4.512198 CGCCAACCGGAAACAATACATATA 59.488 41.667 9.46 0.00 0.00 0.86
2609 3201 3.314080 CGCCAACCGGAAACAATACATAT 59.686 43.478 9.46 0.00 0.00 1.78
2610 3202 2.678836 CGCCAACCGGAAACAATACATA 59.321 45.455 9.46 0.00 0.00 2.29
2611 3203 1.470890 CGCCAACCGGAAACAATACAT 59.529 47.619 9.46 0.00 0.00 2.29
2612 3204 0.875728 CGCCAACCGGAAACAATACA 59.124 50.000 9.46 0.00 0.00 2.29
2613 3205 0.876399 ACGCCAACCGGAAACAATAC 59.124 50.000 9.46 0.00 42.52 1.89
2614 3206 1.606903 AACGCCAACCGGAAACAATA 58.393 45.000 9.46 0.00 42.52 1.90
2615 3207 0.747852 AAACGCCAACCGGAAACAAT 59.252 45.000 9.46 0.00 42.52 2.71
2616 3208 0.531200 AAAACGCCAACCGGAAACAA 59.469 45.000 9.46 0.00 42.52 2.83
2617 3209 1.386533 TAAAACGCCAACCGGAAACA 58.613 45.000 9.46 0.00 42.52 2.83
2618 3210 2.118683 GTTAAAACGCCAACCGGAAAC 58.881 47.619 9.46 0.00 42.52 2.78
2619 3211 2.022934 AGTTAAAACGCCAACCGGAAA 58.977 42.857 9.46 0.00 42.52 3.13
2620 3212 1.677942 AGTTAAAACGCCAACCGGAA 58.322 45.000 9.46 0.00 42.52 4.30
2621 3213 2.036992 TCTAGTTAAAACGCCAACCGGA 59.963 45.455 9.46 0.00 42.52 5.14
2622 3214 2.415776 TCTAGTTAAAACGCCAACCGG 58.584 47.619 0.00 0.00 42.52 5.28
2623 3215 4.471157 TTTCTAGTTAAAACGCCAACCG 57.529 40.909 0.00 0.00 44.21 4.44
2624 3216 5.684184 CACTTTTCTAGTTAAAACGCCAACC 59.316 40.000 0.00 0.00 33.85 3.77
2625 3217 5.684184 CCACTTTTCTAGTTAAAACGCCAAC 59.316 40.000 0.00 0.00 33.85 3.77
2626 3218 5.589452 TCCACTTTTCTAGTTAAAACGCCAA 59.411 36.000 0.00 0.00 33.85 4.52
2627 3219 5.124645 TCCACTTTTCTAGTTAAAACGCCA 58.875 37.500 0.00 0.00 33.85 5.69
2628 3220 5.678132 TCCACTTTTCTAGTTAAAACGCC 57.322 39.130 0.00 0.00 33.85 5.68
2629 3221 6.722301 ACTTCCACTTTTCTAGTTAAAACGC 58.278 36.000 0.00 0.00 33.85 4.84
2630 3222 7.849515 GTGACTTCCACTTTTCTAGTTAAAACG 59.150 37.037 0.00 0.00 42.44 3.60
2701 3293 4.637276 TGACCATGCGTTTCTCTTTTCTA 58.363 39.130 0.00 0.00 0.00 2.10
2717 3309 9.553064 GAATGAGAAGACATACTAATTGACCAT 57.447 33.333 0.00 0.00 0.00 3.55
2793 3385 1.396653 ATGGCATTTACTCCAGCAGC 58.603 50.000 0.00 0.00 35.57 5.25
2799 3391 4.165779 CACGTTGAAATGGCATTTACTCC 58.834 43.478 24.39 13.01 31.47 3.85
2864 3456 4.182693 TGCAGCTTTCTGATGATTTTGG 57.817 40.909 0.00 0.00 42.95 3.28
2869 3461 5.191426 AGTAACATGCAGCTTTCTGATGAT 58.809 37.500 0.00 0.00 42.95 2.45
2911 3503 3.516700 TCCTCATCTTGATGCAAGTCTCA 59.483 43.478 5.78 0.00 41.66 3.27
2916 3508 3.618351 ACCTTCCTCATCTTGATGCAAG 58.382 45.455 5.78 0.84 42.25 4.01
2948 3548 3.119495 GGCTTCTCAAACCGCATTTACAT 60.119 43.478 0.00 0.00 0.00 2.29
2963 3563 8.894768 ATGTATTACAGTTGATTAGGCTTCTC 57.105 34.615 2.53 0.00 0.00 2.87
3049 3653 5.647658 TCTTCACACAGACACTTGAATTTGT 59.352 36.000 0.00 0.00 0.00 2.83
3073 3677 7.480760 ACATAGCCTAAACAACAAATGGAAT 57.519 32.000 0.00 0.00 0.00 3.01
3075 3679 6.909550 AACATAGCCTAAACAACAAATGGA 57.090 33.333 0.00 0.00 0.00 3.41
3146 3750 5.468746 GTGGTATCATGCGCCTATAGAAAAA 59.531 40.000 4.18 0.00 0.00 1.94
3147 3751 4.994852 GTGGTATCATGCGCCTATAGAAAA 59.005 41.667 4.18 0.00 0.00 2.29
3148 3752 4.039852 TGTGGTATCATGCGCCTATAGAAA 59.960 41.667 4.18 0.00 0.00 2.52
3149 3753 3.576550 TGTGGTATCATGCGCCTATAGAA 59.423 43.478 4.18 0.00 0.00 2.10
3150 3754 3.161866 TGTGGTATCATGCGCCTATAGA 58.838 45.455 4.18 0.00 0.00 1.98
3151 3755 3.056536 ACTGTGGTATCATGCGCCTATAG 60.057 47.826 4.18 0.00 0.00 1.31
3153 3757 1.694150 ACTGTGGTATCATGCGCCTAT 59.306 47.619 4.18 0.00 0.00 2.57
3154 3758 1.119684 ACTGTGGTATCATGCGCCTA 58.880 50.000 4.18 0.00 0.00 3.93
3155 3759 1.119684 TACTGTGGTATCATGCGCCT 58.880 50.000 4.18 0.00 0.00 5.52
3156 3760 1.948104 TTACTGTGGTATCATGCGCC 58.052 50.000 4.18 0.00 0.00 6.53
3187 3791 9.975218 ACAGTATTCCAAATACTCCAAAATACT 57.025 29.630 8.94 0.00 38.38 2.12
3191 3795 9.444600 GTCTACAGTATTCCAAATACTCCAAAA 57.555 33.333 8.94 0.00 32.93 2.44
3193 3797 7.402071 AGGTCTACAGTATTCCAAATACTCCAA 59.598 37.037 8.94 0.00 32.93 3.53
3194 3798 6.901300 AGGTCTACAGTATTCCAAATACTCCA 59.099 38.462 8.94 1.27 32.93 3.86
3195 3799 7.147707 ACAGGTCTACAGTATTCCAAATACTCC 60.148 40.741 8.94 7.55 32.93 3.85
3197 3801 7.735326 ACAGGTCTACAGTATTCCAAATACT 57.265 36.000 6.54 6.54 35.39 2.12
3198 3802 8.665685 CAAACAGGTCTACAGTATTCCAAATAC 58.334 37.037 2.32 2.32 0.00 1.89
3199 3803 7.827236 CCAAACAGGTCTACAGTATTCCAAATA 59.173 37.037 4.62 0.00 0.00 1.40
3200 3804 6.659242 CCAAACAGGTCTACAGTATTCCAAAT 59.341 38.462 4.62 0.00 0.00 2.32
3201 3805 6.001460 CCAAACAGGTCTACAGTATTCCAAA 58.999 40.000 4.62 0.00 0.00 3.28
3202 3806 5.556915 CCAAACAGGTCTACAGTATTCCAA 58.443 41.667 4.62 0.00 0.00 3.53
3203 3807 4.564821 GCCAAACAGGTCTACAGTATTCCA 60.565 45.833 4.62 0.00 40.61 3.53
3204 3808 3.939592 GCCAAACAGGTCTACAGTATTCC 59.060 47.826 0.00 0.00 40.61 3.01
3205 3809 4.833390 AGCCAAACAGGTCTACAGTATTC 58.167 43.478 0.00 0.00 40.61 1.75
3208 3812 4.669700 TCTAGCCAAACAGGTCTACAGTA 58.330 43.478 0.00 0.00 40.61 2.74
3209 3813 3.507411 TCTAGCCAAACAGGTCTACAGT 58.493 45.455 0.00 0.00 40.61 3.55
3210 3814 4.021016 AGTTCTAGCCAAACAGGTCTACAG 60.021 45.833 0.00 0.00 40.61 2.74
3212 3816 4.538746 AGTTCTAGCCAAACAGGTCTAC 57.461 45.455 0.00 0.00 40.61 2.59
3213 3817 6.869206 ATAAGTTCTAGCCAAACAGGTCTA 57.131 37.500 0.00 0.00 40.61 2.59
3214 3818 5.763876 ATAAGTTCTAGCCAAACAGGTCT 57.236 39.130 0.00 0.00 40.61 3.85
3215 3819 7.048512 ACATATAAGTTCTAGCCAAACAGGTC 58.951 38.462 0.00 0.00 40.61 3.85
3217 3821 8.958119 TTACATATAAGTTCTAGCCAAACAGG 57.042 34.615 0.00 0.00 41.84 4.00
3219 3823 9.899661 ACATTACATATAAGTTCTAGCCAAACA 57.100 29.630 0.00 0.00 0.00 2.83
3255 3859 4.669283 GCGACTTGTTAACAAACAGCTAAC 59.331 41.667 20.89 6.59 35.15 2.34
3256 3860 4.333095 TGCGACTTGTTAACAAACAGCTAA 59.667 37.500 26.91 14.87 35.15 3.09
3257 3861 3.872182 TGCGACTTGTTAACAAACAGCTA 59.128 39.130 26.91 17.58 35.15 3.32
3258 3862 2.680841 TGCGACTTGTTAACAAACAGCT 59.319 40.909 26.91 10.52 35.15 4.24
3259 3863 3.059634 TGCGACTTGTTAACAAACAGC 57.940 42.857 20.89 22.38 35.15 4.40
3260 3864 5.356063 GTTTGCGACTTGTTAACAAACAG 57.644 39.130 20.89 12.55 45.81 3.16
3262 3866 4.258704 CGTGTTTGCGACTTGTTAACAAAC 60.259 41.667 20.89 14.47 46.38 2.93
3269 5410 4.682306 GCGTGTTTGCGACTTGTT 57.318 50.000 0.00 0.00 0.00 2.83
3293 5434 2.551270 CAACGGTCAGCGAGTTGC 59.449 61.111 1.65 0.00 46.98 4.17
3294 5435 1.568612 ATGCAACGGTCAGCGAGTTG 61.569 55.000 1.65 0.00 45.59 3.16
3295 5436 0.037697 TATGCAACGGTCAGCGAGTT 60.038 50.000 1.65 0.00 0.00 3.01
3296 5437 0.736325 GTATGCAACGGTCAGCGAGT 60.736 55.000 1.65 0.00 0.00 4.18
3297 5438 0.735978 TGTATGCAACGGTCAGCGAG 60.736 55.000 1.65 0.00 0.00 5.03
3298 5439 0.735978 CTGTATGCAACGGTCAGCGA 60.736 55.000 1.65 0.00 0.00 4.93
3299 5440 1.709760 CTGTATGCAACGGTCAGCG 59.290 57.895 0.00 0.00 0.00 5.18
3300 5441 1.425428 GCTGTATGCAACGGTCAGC 59.575 57.895 13.10 13.10 43.12 4.26
3310 5451 2.289002 GGTTGCTCAGTATGCTGTATGC 59.711 50.000 10.80 13.25 43.05 3.14
3311 5452 3.534554 TGGTTGCTCAGTATGCTGTATG 58.465 45.455 10.80 4.16 43.05 2.39
3314 5455 1.947678 GCTGGTTGCTCAGTATGCTGT 60.948 52.381 10.80 0.00 43.05 4.40
3315 5456 0.731417 GCTGGTTGCTCAGTATGCTG 59.269 55.000 4.14 4.14 43.87 4.41
3316 5457 3.165606 GCTGGTTGCTCAGTATGCT 57.834 52.632 0.00 0.00 38.95 3.79
3329 5470 0.178981 AGTTTGTGGATGCAGCTGGT 60.179 50.000 17.12 0.00 0.00 4.00
3330 5471 0.963962 AAGTTTGTGGATGCAGCTGG 59.036 50.000 17.12 0.00 0.00 4.85
3331 5472 1.610038 TCAAGTTTGTGGATGCAGCTG 59.390 47.619 10.11 10.11 0.00 4.24
3333 5474 2.397549 GTTCAAGTTTGTGGATGCAGC 58.602 47.619 0.00 0.00 0.00 5.25
3334 5475 2.605338 CCGTTCAAGTTTGTGGATGCAG 60.605 50.000 0.00 0.00 0.00 4.41
3335 5476 1.336440 CCGTTCAAGTTTGTGGATGCA 59.664 47.619 0.00 0.00 0.00 3.96
3336 5477 1.930371 GCCGTTCAAGTTTGTGGATGC 60.930 52.381 5.27 0.00 0.00 3.91
3337 5478 1.335872 GGCCGTTCAAGTTTGTGGATG 60.336 52.381 0.00 0.00 0.00 3.51
3339 5480 0.394488 TGGCCGTTCAAGTTTGTGGA 60.394 50.000 0.00 0.00 0.00 4.02
3340 5481 0.673437 ATGGCCGTTCAAGTTTGTGG 59.327 50.000 0.00 0.00 0.00 4.17
3341 5482 1.602668 CCATGGCCGTTCAAGTTTGTG 60.603 52.381 0.00 0.00 0.00 3.33
3342 5483 0.673437 CCATGGCCGTTCAAGTTTGT 59.327 50.000 0.00 0.00 0.00 2.83
3345 5753 0.110486 AGTCCATGGCCGTTCAAGTT 59.890 50.000 6.96 0.00 0.00 2.66
3348 5756 2.156098 GTTTAGTCCATGGCCGTTCAA 58.844 47.619 6.96 0.00 0.00 2.69
3351 5759 2.507407 ATGTTTAGTCCATGGCCGTT 57.493 45.000 6.96 0.00 0.00 4.44
3354 5762 4.892934 TGGATAAATGTTTAGTCCATGGCC 59.107 41.667 6.96 0.00 34.23 5.36
3356 5764 7.403312 TTGTGGATAAATGTTTAGTCCATGG 57.597 36.000 4.97 4.97 40.72 3.66
3357 5765 7.489113 GCTTTGTGGATAAATGTTTAGTCCATG 59.511 37.037 14.20 0.00 40.72 3.66
3363 5771 7.989826 AGCTAGCTTTGTGGATAAATGTTTAG 58.010 34.615 12.68 0.00 0.00 1.85
3368 5776 7.320443 TGTAAGCTAGCTTTGTGGATAAATG 57.680 36.000 33.50 0.00 37.47 2.32
3369 5777 7.611855 AGTTGTAAGCTAGCTTTGTGGATAAAT 59.388 33.333 33.50 16.30 37.47 1.40
3372 5780 6.049955 AGTTGTAAGCTAGCTTTGTGGATA 57.950 37.500 33.50 12.40 37.47 2.59
3373 5781 4.911390 AGTTGTAAGCTAGCTTTGTGGAT 58.089 39.130 33.50 11.64 37.47 3.41
3375 5783 5.390991 GCTAAGTTGTAAGCTAGCTTTGTGG 60.391 44.000 33.50 15.38 37.47 4.17
3378 5786 5.862924 TGCTAAGTTGTAAGCTAGCTTTG 57.137 39.130 33.50 10.96 39.53 2.77
3379 5787 8.041323 TCTTATGCTAAGTTGTAAGCTAGCTTT 58.959 33.333 33.50 17.67 39.53 3.51
3380 5788 7.556844 TCTTATGCTAAGTTGTAAGCTAGCTT 58.443 34.615 31.38 31.38 39.53 3.74
3381 5789 7.113658 TCTTATGCTAAGTTGTAAGCTAGCT 57.886 36.000 12.68 12.68 39.53 3.32
3383 5791 7.717568 TCCTCTTATGCTAAGTTGTAAGCTAG 58.282 38.462 0.00 0.00 39.53 3.42
3386 5794 5.755861 CCTCCTCTTATGCTAAGTTGTAAGC 59.244 44.000 0.00 0.00 39.25 3.09
3387 5795 5.755861 GCCTCCTCTTATGCTAAGTTGTAAG 59.244 44.000 0.00 0.00 0.00 2.34
3389 5797 4.714802 TGCCTCCTCTTATGCTAAGTTGTA 59.285 41.667 0.00 0.00 0.00 2.41
3390 5798 3.519510 TGCCTCCTCTTATGCTAAGTTGT 59.480 43.478 0.00 0.00 0.00 3.32
3391 5799 4.125703 CTGCCTCCTCTTATGCTAAGTTG 58.874 47.826 0.00 0.00 0.00 3.16
3393 5801 2.103941 GCTGCCTCCTCTTATGCTAAGT 59.896 50.000 0.00 0.00 0.00 2.24
3394 5802 2.368221 AGCTGCCTCCTCTTATGCTAAG 59.632 50.000 0.00 0.00 0.00 2.18
3395 5803 2.103771 CAGCTGCCTCCTCTTATGCTAA 59.896 50.000 0.00 0.00 0.00 3.09
3396 5804 1.690893 CAGCTGCCTCCTCTTATGCTA 59.309 52.381 0.00 0.00 0.00 3.49
3398 5806 0.467384 TCAGCTGCCTCCTCTTATGC 59.533 55.000 9.47 0.00 0.00 3.14
3400 5808 2.476199 AGTTCAGCTGCCTCCTCTTAT 58.524 47.619 9.47 0.00 0.00 1.73
3401 5809 1.944177 AGTTCAGCTGCCTCCTCTTA 58.056 50.000 9.47 0.00 0.00 2.10
3402 5810 1.830477 CTAGTTCAGCTGCCTCCTCTT 59.170 52.381 9.47 0.00 0.00 2.85
3404 5812 1.136110 GACTAGTTCAGCTGCCTCCTC 59.864 57.143 9.47 2.16 0.00 3.71
3405 5813 1.190643 GACTAGTTCAGCTGCCTCCT 58.809 55.000 9.47 4.24 0.00 3.69
3406 5814 0.176910 GGACTAGTTCAGCTGCCTCC 59.823 60.000 9.47 2.33 0.00 4.30
3407 5815 0.179124 CGGACTAGTTCAGCTGCCTC 60.179 60.000 9.47 1.54 0.00 4.70
3408 5816 0.612174 TCGGACTAGTTCAGCTGCCT 60.612 55.000 9.47 9.87 0.00 4.75
3409 5817 0.246635 TTCGGACTAGTTCAGCTGCC 59.753 55.000 9.47 1.04 0.00 4.85
3410 5818 1.067495 ACTTCGGACTAGTTCAGCTGC 60.067 52.381 9.47 0.00 0.00 5.25
3411 5819 2.600731 CACTTCGGACTAGTTCAGCTG 58.399 52.381 7.63 7.63 0.00 4.24
3414 5822 1.272490 TGGCACTTCGGACTAGTTCAG 59.728 52.381 1.17 0.00 0.00 3.02
3415 5823 1.000506 GTGGCACTTCGGACTAGTTCA 59.999 52.381 11.13 0.00 0.00 3.18
3416 5824 1.272769 AGTGGCACTTCGGACTAGTTC 59.727 52.381 15.88 0.00 0.00 3.01
3420 5828 1.292223 GCAGTGGCACTTCGGACTA 59.708 57.895 19.43 0.00 40.72 2.59
3460 5868 1.211190 ACTAACGACGCGGAAGACC 59.789 57.895 12.47 0.00 0.00 3.85
3461 5869 4.855596 ACTAACGACGCGGAAGAC 57.144 55.556 12.47 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.