Multiple sequence alignment - TraesCS2B01G276800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G276800 chr2B 100.000 2476 0 0 1 2476 382564154 382561679 0.000000e+00 4573
1 TraesCS2B01G276800 chr2B 95.805 1311 44 8 198 1502 593651910 593650605 0.000000e+00 2106
2 TraesCS2B01G276800 chr2B 97.312 558 13 2 1920 2476 517800284 517799728 0.000000e+00 946
3 TraesCS2B01G276800 chr2B 97.138 559 14 2 1920 2476 674169622 674170180 0.000000e+00 942
4 TraesCS2B01G276800 chr2B 97.133 558 14 2 1920 2476 75950809 75950253 0.000000e+00 941
5 TraesCS2B01G276800 chr3B 96.146 1505 53 5 1 1502 456319621 456318119 0.000000e+00 2453
6 TraesCS2B01G276800 chr3B 97.312 558 13 2 1920 2476 1488671 1488115 0.000000e+00 946
7 TraesCS2B01G276800 chr5B 95.878 1504 60 2 1 1502 8879671 8878168 0.000000e+00 2433
8 TraesCS2B01G276800 chr5B 97.312 558 14 1 1920 2476 602090750 602091307 0.000000e+00 946
9 TraesCS2B01G276800 chr4B 95.681 1505 58 4 1 1502 232153486 232154986 0.000000e+00 2412
10 TraesCS2B01G276800 chr4B 95.017 1505 69 6 1 1502 612999324 613000825 0.000000e+00 2359
11 TraesCS2B01G276800 chr7B 94.754 1506 75 4 1 1502 609890968 609892473 0.000000e+00 2340
12 TraesCS2B01G276800 chr7B 88.970 1505 151 11 1 1501 35634576 35633083 0.000000e+00 1845
13 TraesCS2B01G276800 chr7B 97.317 559 13 2 1920 2476 3060992 3061550 0.000000e+00 948
14 TraesCS2B01G276800 chr7B 97.133 558 13 3 1920 2476 238379802 238380357 0.000000e+00 939
15 TraesCS2B01G276800 chr7B 96.953 558 16 1 1920 2476 244791418 244790861 0.000000e+00 935
16 TraesCS2B01G276800 chr3D 94.020 1505 75 6 1 1502 560263494 560264986 0.000000e+00 2266
17 TraesCS2B01G276800 chr3D 86.517 89 12 0 1579 1667 543773226 543773138 5.640000e-17 99
18 TraesCS2B01G276800 chr7A 87.150 1502 182 8 1 1495 691984927 691983430 0.000000e+00 1694
19 TraesCS2B01G276800 chr4A 97.861 561 8 3 1920 2476 655613123 655613683 0.000000e+00 966
20 TraesCS2B01G276800 chr2D 94.292 438 24 1 1501 1938 314340918 314340482 0.000000e+00 669
21 TraesCS2B01G276800 chr2A 93.407 91 6 0 1701 1791 421224014 421224104 4.300000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G276800 chr2B 382561679 382564154 2475 True 4573 4573 100.000 1 2476 1 chr2B.!!$R2 2475
1 TraesCS2B01G276800 chr2B 593650605 593651910 1305 True 2106 2106 95.805 198 1502 1 chr2B.!!$R4 1304
2 TraesCS2B01G276800 chr2B 517799728 517800284 556 True 946 946 97.312 1920 2476 1 chr2B.!!$R3 556
3 TraesCS2B01G276800 chr2B 674169622 674170180 558 False 942 942 97.138 1920 2476 1 chr2B.!!$F1 556
4 TraesCS2B01G276800 chr2B 75950253 75950809 556 True 941 941 97.133 1920 2476 1 chr2B.!!$R1 556
5 TraesCS2B01G276800 chr3B 456318119 456319621 1502 True 2453 2453 96.146 1 1502 1 chr3B.!!$R2 1501
6 TraesCS2B01G276800 chr3B 1488115 1488671 556 True 946 946 97.312 1920 2476 1 chr3B.!!$R1 556
7 TraesCS2B01G276800 chr5B 8878168 8879671 1503 True 2433 2433 95.878 1 1502 1 chr5B.!!$R1 1501
8 TraesCS2B01G276800 chr5B 602090750 602091307 557 False 946 946 97.312 1920 2476 1 chr5B.!!$F1 556
9 TraesCS2B01G276800 chr4B 232153486 232154986 1500 False 2412 2412 95.681 1 1502 1 chr4B.!!$F1 1501
10 TraesCS2B01G276800 chr4B 612999324 613000825 1501 False 2359 2359 95.017 1 1502 1 chr4B.!!$F2 1501
11 TraesCS2B01G276800 chr7B 609890968 609892473 1505 False 2340 2340 94.754 1 1502 1 chr7B.!!$F3 1501
12 TraesCS2B01G276800 chr7B 35633083 35634576 1493 True 1845 1845 88.970 1 1501 1 chr7B.!!$R1 1500
13 TraesCS2B01G276800 chr7B 3060992 3061550 558 False 948 948 97.317 1920 2476 1 chr7B.!!$F1 556
14 TraesCS2B01G276800 chr7B 238379802 238380357 555 False 939 939 97.133 1920 2476 1 chr7B.!!$F2 556
15 TraesCS2B01G276800 chr7B 244790861 244791418 557 True 935 935 96.953 1920 2476 1 chr7B.!!$R2 556
16 TraesCS2B01G276800 chr3D 560263494 560264986 1492 False 2266 2266 94.020 1 1502 1 chr3D.!!$F1 1501
17 TraesCS2B01G276800 chr7A 691983430 691984927 1497 True 1694 1694 87.150 1 1495 1 chr7A.!!$R1 1494
18 TraesCS2B01G276800 chr4A 655613123 655613683 560 False 966 966 97.861 1920 2476 1 chr4A.!!$F1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
968 975 0.034089 GCACACTCCCCTAAGGCAAT 60.034 55.0 0.0 0.0 34.51 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 1901 0.179129 GATGGGCGTGCAAGGATTTG 60.179 55.0 0.79 0.0 37.36 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.992754 ACAATCTTGAGAGCAAAATACTTCT 57.007 32.000 0.00 0.00 32.73 2.85
101 102 7.994425 TCTTTTACCTGTCAAAGCATTATGA 57.006 32.000 0.00 0.00 31.15 2.15
173 174 8.200024 TGGACAAAAGATTGATATTTGGGAAA 57.800 30.769 0.00 0.00 38.94 3.13
282 283 4.699637 CCAATCATGAATTGTTGGGATGG 58.300 43.478 15.33 2.41 42.80 3.51
292 293 2.626785 TGTTGGGATGGAGACTTGGTA 58.373 47.619 0.00 0.00 0.00 3.25
467 469 8.088463 TGGGAGGAAATTGCAATATACAAATT 57.912 30.769 13.39 0.70 0.00 1.82
524 526 6.763610 GGGTAAGATCTGGAAACTATCTTGTG 59.236 42.308 0.00 0.00 41.09 3.33
827 833 2.314122 GACTCCAGAACGTACGTGAAC 58.686 52.381 23.57 15.96 0.00 3.18
923 930 0.322456 CAAACTTCGATGGGGGCTCA 60.322 55.000 3.12 0.00 0.00 4.26
968 975 0.034089 GCACACTCCCCTAAGGCAAT 60.034 55.000 0.00 0.00 34.51 3.56
1021 1028 9.238368 CTCCTATGGGTTTTGTGAAACTAAATA 57.762 33.333 0.00 0.00 42.95 1.40
1145 1152 6.567687 TTGGTGTGTTGATGTATTAACAGG 57.432 37.500 2.86 0.00 39.49 4.00
1549 1566 8.650143 AATTAACAACAATACCATTCAGGACT 57.350 30.769 0.00 0.00 41.22 3.85
1550 1567 9.747898 AATTAACAACAATACCATTCAGGACTA 57.252 29.630 0.00 0.00 41.22 2.59
1551 1568 8.786826 TTAACAACAATACCATTCAGGACTAG 57.213 34.615 0.00 0.00 41.22 2.57
1552 1569 6.374417 ACAACAATACCATTCAGGACTAGT 57.626 37.500 0.00 0.00 41.22 2.57
1553 1570 6.779860 ACAACAATACCATTCAGGACTAGTT 58.220 36.000 0.00 0.00 41.22 2.24
1554 1571 6.879458 ACAACAATACCATTCAGGACTAGTTC 59.121 38.462 0.00 0.00 41.22 3.01
1555 1572 6.875972 ACAATACCATTCAGGACTAGTTCT 57.124 37.500 0.00 0.00 41.22 3.01
1556 1573 7.259088 ACAATACCATTCAGGACTAGTTCTT 57.741 36.000 0.00 0.00 41.22 2.52
1557 1574 7.106239 ACAATACCATTCAGGACTAGTTCTTG 58.894 38.462 0.00 0.00 41.22 3.02
1558 1575 4.559862 ACCATTCAGGACTAGTTCTTGG 57.440 45.455 16.12 16.12 41.22 3.61
1559 1576 4.168101 ACCATTCAGGACTAGTTCTTGGA 58.832 43.478 22.36 7.17 41.22 3.53
1560 1577 4.223923 ACCATTCAGGACTAGTTCTTGGAG 59.776 45.833 22.36 3.96 41.22 3.86
1561 1578 4.383552 CCATTCAGGACTAGTTCTTGGAGG 60.384 50.000 13.36 5.10 41.22 4.30
1562 1579 2.180276 TCAGGACTAGTTCTTGGAGGC 58.820 52.381 0.00 0.00 32.07 4.70
1563 1580 1.902508 CAGGACTAGTTCTTGGAGGCA 59.097 52.381 0.00 0.00 0.00 4.75
1564 1581 2.503356 CAGGACTAGTTCTTGGAGGCAT 59.497 50.000 0.00 0.00 0.00 4.40
1565 1582 3.706594 CAGGACTAGTTCTTGGAGGCATA 59.293 47.826 0.00 0.00 0.00 3.14
1566 1583 3.707102 AGGACTAGTTCTTGGAGGCATAC 59.293 47.826 0.00 0.00 0.00 2.39
1567 1584 3.707102 GGACTAGTTCTTGGAGGCATACT 59.293 47.826 0.00 0.00 0.00 2.12
1568 1585 4.162509 GGACTAGTTCTTGGAGGCATACTT 59.837 45.833 0.00 0.00 0.00 2.24
1569 1586 5.346181 ACTAGTTCTTGGAGGCATACTTC 57.654 43.478 0.00 0.00 0.00 3.01
1570 1587 5.026790 ACTAGTTCTTGGAGGCATACTTCT 58.973 41.667 0.00 0.00 0.00 2.85
1571 1588 6.195700 ACTAGTTCTTGGAGGCATACTTCTA 58.804 40.000 0.00 0.00 0.00 2.10
1572 1589 6.841755 ACTAGTTCTTGGAGGCATACTTCTAT 59.158 38.462 0.00 0.00 0.00 1.98
1573 1590 8.005388 ACTAGTTCTTGGAGGCATACTTCTATA 58.995 37.037 0.00 0.00 0.00 1.31
1574 1591 7.056844 AGTTCTTGGAGGCATACTTCTATAC 57.943 40.000 0.00 0.00 0.00 1.47
1575 1592 6.841755 AGTTCTTGGAGGCATACTTCTATACT 59.158 38.462 0.00 0.00 0.00 2.12
1576 1593 6.902771 TCTTGGAGGCATACTTCTATACTC 57.097 41.667 0.00 0.00 0.00 2.59
1577 1594 5.775701 TCTTGGAGGCATACTTCTATACTCC 59.224 44.000 0.00 0.00 36.80 3.85
1578 1595 5.074746 TGGAGGCATACTTCTATACTCCA 57.925 43.478 6.42 6.42 40.28 3.86
1579 1596 5.080337 TGGAGGCATACTTCTATACTCCAG 58.920 45.833 6.42 0.00 39.02 3.86
1580 1597 5.162980 TGGAGGCATACTTCTATACTCCAGA 60.163 44.000 6.42 0.00 39.02 3.86
1581 1598 5.775701 GGAGGCATACTTCTATACTCCAGAA 59.224 44.000 0.00 0.00 36.54 3.02
1582 1599 6.267928 GGAGGCATACTTCTATACTCCAGAAA 59.732 42.308 0.00 0.00 36.54 2.52
1583 1600 7.202011 GGAGGCATACTTCTATACTCCAGAAAA 60.202 40.741 0.00 0.00 36.54 2.29
1584 1601 8.090788 AGGCATACTTCTATACTCCAGAAAAA 57.909 34.615 0.00 0.00 31.84 1.94
1602 1619 3.525800 AAAACTCTAAGCACCATGGGT 57.474 42.857 18.09 0.00 35.62 4.51
1603 1620 2.789409 AACTCTAAGCACCATGGGTC 57.211 50.000 18.09 7.06 31.02 4.46
1604 1621 1.656587 ACTCTAAGCACCATGGGTCA 58.343 50.000 18.09 0.00 31.02 4.02
1605 1622 1.279271 ACTCTAAGCACCATGGGTCAC 59.721 52.381 18.09 1.84 31.02 3.67
1606 1623 1.556911 CTCTAAGCACCATGGGTCACT 59.443 52.381 18.09 4.41 31.02 3.41
1607 1624 1.555075 TCTAAGCACCATGGGTCACTC 59.445 52.381 18.09 0.00 31.02 3.51
1608 1625 0.618458 TAAGCACCATGGGTCACTCC 59.382 55.000 18.09 0.00 31.02 3.85
1609 1626 2.436646 GCACCATGGGTCACTCCG 60.437 66.667 18.09 0.00 37.00 4.63
1610 1627 3.068881 CACCATGGGTCACTCCGT 58.931 61.111 18.09 0.00 37.00 4.69
1611 1628 1.375908 CACCATGGGTCACTCCGTG 60.376 63.158 18.09 0.00 42.08 4.94
1612 1629 1.535444 ACCATGGGTCACTCCGTGA 60.535 57.895 18.09 0.00 44.47 4.35
1613 1630 0.909610 ACCATGGGTCACTCCGTGAT 60.910 55.000 18.09 0.00 44.63 3.06
1614 1631 0.253044 CCATGGGTCACTCCGTGATT 59.747 55.000 2.85 0.00 44.63 2.57
1615 1632 1.656652 CATGGGTCACTCCGTGATTC 58.343 55.000 0.00 0.00 44.63 2.52
1616 1633 0.175760 ATGGGTCACTCCGTGATTCG 59.824 55.000 0.00 0.00 44.63 3.34
1617 1634 0.896479 TGGGTCACTCCGTGATTCGA 60.896 55.000 0.00 0.00 44.63 3.71
1618 1635 0.245539 GGGTCACTCCGTGATTCGAA 59.754 55.000 0.00 0.00 44.63 3.71
1619 1636 1.347320 GGTCACTCCGTGATTCGAAC 58.653 55.000 0.00 0.00 44.63 3.95
1620 1637 1.347320 GTCACTCCGTGATTCGAACC 58.653 55.000 0.00 0.00 44.63 3.62
1621 1638 0.245539 TCACTCCGTGATTCGAACCC 59.754 55.000 0.00 0.00 37.67 4.11
1622 1639 1.076533 CACTCCGTGATTCGAACCCG 61.077 60.000 0.00 2.80 42.86 5.28
1623 1640 1.246056 ACTCCGTGATTCGAACCCGA 61.246 55.000 0.00 0.00 43.96 5.14
1624 1641 0.525668 CTCCGTGATTCGAACCCGAG 60.526 60.000 0.00 0.00 46.39 4.63
1625 1642 1.214589 CCGTGATTCGAACCCGAGT 59.785 57.895 0.00 0.00 46.39 4.18
1626 1643 1.076533 CCGTGATTCGAACCCGAGTG 61.077 60.000 0.00 0.00 46.39 3.51
1627 1644 0.109458 CGTGATTCGAACCCGAGTGA 60.109 55.000 0.00 0.00 46.39 3.41
1628 1645 1.630148 GTGATTCGAACCCGAGTGAG 58.370 55.000 0.00 0.00 46.39 3.51
1629 1646 0.108804 TGATTCGAACCCGAGTGAGC 60.109 55.000 0.00 0.00 46.39 4.26
1630 1647 0.173708 GATTCGAACCCGAGTGAGCT 59.826 55.000 0.00 0.00 46.39 4.09
1631 1648 1.404391 GATTCGAACCCGAGTGAGCTA 59.596 52.381 0.00 0.00 46.39 3.32
1632 1649 0.809385 TTCGAACCCGAGTGAGCTAG 59.191 55.000 0.00 0.00 46.39 3.42
1633 1650 0.035725 TCGAACCCGAGTGAGCTAGA 60.036 55.000 0.00 0.00 40.30 2.43
1634 1651 1.025812 CGAACCCGAGTGAGCTAGAT 58.974 55.000 0.00 0.00 38.22 1.98
1635 1652 2.158856 TCGAACCCGAGTGAGCTAGATA 60.159 50.000 0.00 0.00 40.30 1.98
1636 1653 2.224549 CGAACCCGAGTGAGCTAGATAG 59.775 54.545 0.00 0.00 38.22 2.08
1637 1654 5.440768 CGAACCCGAGTGAGCTAGATAGC 62.441 56.522 3.58 3.58 43.27 2.97
1654 1671 8.192110 GCTAGATAGCTATGTGTTATCCTAACC 58.808 40.741 11.94 0.00 45.62 2.85
1655 1672 9.244292 CTAGATAGCTATGTGTTATCCTAACCA 57.756 37.037 11.94 0.00 38.95 3.67
1656 1673 8.492415 AGATAGCTATGTGTTATCCTAACCAA 57.508 34.615 11.94 0.00 38.95 3.67
1657 1674 9.105844 AGATAGCTATGTGTTATCCTAACCAAT 57.894 33.333 11.94 0.00 38.95 3.16
1679 1696 6.919775 ATAGGGTGACACCATATTCTCTAC 57.080 41.667 23.00 4.28 42.01 2.59
1680 1697 3.967987 AGGGTGACACCATATTCTCTACC 59.032 47.826 25.75 4.11 41.02 3.18
1681 1698 3.967987 GGGTGACACCATATTCTCTACCT 59.032 47.826 25.75 0.00 41.02 3.08
1682 1699 4.202264 GGGTGACACCATATTCTCTACCTG 60.202 50.000 25.75 0.00 41.02 4.00
1683 1700 4.649674 GGTGACACCATATTCTCTACCTGA 59.350 45.833 20.14 0.00 38.42 3.86
1684 1701 5.128827 GGTGACACCATATTCTCTACCTGAA 59.871 44.000 20.14 0.00 38.42 3.02
1685 1702 6.351881 GGTGACACCATATTCTCTACCTGAAA 60.352 42.308 20.14 0.00 38.42 2.69
1686 1703 7.103641 GTGACACCATATTCTCTACCTGAAAA 58.896 38.462 0.00 0.00 0.00 2.29
1687 1704 7.770897 GTGACACCATATTCTCTACCTGAAAAT 59.229 37.037 0.00 0.00 0.00 1.82
1688 1705 7.987458 TGACACCATATTCTCTACCTGAAAATC 59.013 37.037 0.00 0.00 0.00 2.17
1689 1706 8.095452 ACACCATATTCTCTACCTGAAAATCT 57.905 34.615 0.00 0.00 0.00 2.40
1690 1707 9.213777 ACACCATATTCTCTACCTGAAAATCTA 57.786 33.333 0.00 0.00 0.00 1.98
1691 1708 9.703892 CACCATATTCTCTACCTGAAAATCTAG 57.296 37.037 0.00 0.00 0.00 2.43
1692 1709 8.371699 ACCATATTCTCTACCTGAAAATCTAGC 58.628 37.037 0.00 0.00 0.00 3.42
1693 1710 7.543868 CCATATTCTCTACCTGAAAATCTAGCG 59.456 40.741 0.00 0.00 0.00 4.26
1694 1711 5.916661 TTCTCTACCTGAAAATCTAGCGT 57.083 39.130 0.00 0.00 0.00 5.07
1695 1712 5.916661 TCTCTACCTGAAAATCTAGCGTT 57.083 39.130 0.00 0.00 0.00 4.84
1696 1713 5.892568 TCTCTACCTGAAAATCTAGCGTTC 58.107 41.667 0.00 0.00 0.00 3.95
1697 1714 5.417894 TCTCTACCTGAAAATCTAGCGTTCA 59.582 40.000 3.53 3.53 0.00 3.18
1698 1715 6.096987 TCTCTACCTGAAAATCTAGCGTTCAT 59.903 38.462 3.87 0.00 31.21 2.57
1699 1716 6.640518 TCTACCTGAAAATCTAGCGTTCATT 58.359 36.000 3.87 0.00 31.21 2.57
1700 1717 7.778083 TCTACCTGAAAATCTAGCGTTCATTA 58.222 34.615 3.87 0.33 31.21 1.90
1701 1718 6.910536 ACCTGAAAATCTAGCGTTCATTAG 57.089 37.500 3.87 0.92 31.21 1.73
1702 1719 6.407202 ACCTGAAAATCTAGCGTTCATTAGT 58.593 36.000 3.87 1.36 31.21 2.24
1703 1720 7.553334 ACCTGAAAATCTAGCGTTCATTAGTA 58.447 34.615 3.87 0.00 31.21 1.82
1704 1721 7.491696 ACCTGAAAATCTAGCGTTCATTAGTAC 59.508 37.037 3.87 0.00 31.21 2.73
1705 1722 7.491372 CCTGAAAATCTAGCGTTCATTAGTACA 59.509 37.037 0.00 0.00 31.21 2.90
1706 1723 8.181487 TGAAAATCTAGCGTTCATTAGTACAC 57.819 34.615 0.00 0.00 0.00 2.90
1707 1724 7.815549 TGAAAATCTAGCGTTCATTAGTACACA 59.184 33.333 0.00 0.00 0.00 3.72
1708 1725 8.718102 AAAATCTAGCGTTCATTAGTACACAT 57.282 30.769 0.00 0.00 0.00 3.21
1709 1726 8.718102 AAATCTAGCGTTCATTAGTACACATT 57.282 30.769 0.00 0.00 0.00 2.71
1710 1727 7.700322 ATCTAGCGTTCATTAGTACACATTG 57.300 36.000 0.00 0.00 0.00 2.82
1711 1728 6.859017 TCTAGCGTTCATTAGTACACATTGA 58.141 36.000 0.00 0.00 0.00 2.57
1712 1729 7.489160 TCTAGCGTTCATTAGTACACATTGAT 58.511 34.615 0.00 0.00 0.00 2.57
1713 1730 6.589830 AGCGTTCATTAGTACACATTGATC 57.410 37.500 0.00 0.00 0.00 2.92
1714 1731 5.523916 AGCGTTCATTAGTACACATTGATCC 59.476 40.000 0.00 0.00 0.00 3.36
1715 1732 5.293324 GCGTTCATTAGTACACATTGATCCA 59.707 40.000 0.00 0.00 0.00 3.41
1716 1733 6.183360 GCGTTCATTAGTACACATTGATCCAA 60.183 38.462 0.00 0.00 0.00 3.53
1717 1734 7.180079 CGTTCATTAGTACACATTGATCCAAC 58.820 38.462 0.00 0.00 0.00 3.77
1718 1735 7.472543 GTTCATTAGTACACATTGATCCAACC 58.527 38.462 0.00 0.00 0.00 3.77
1719 1736 6.119536 TCATTAGTACACATTGATCCAACCC 58.880 40.000 0.00 0.00 0.00 4.11
1720 1737 5.772393 TTAGTACACATTGATCCAACCCT 57.228 39.130 0.00 0.00 0.00 4.34
1721 1738 4.222124 AGTACACATTGATCCAACCCTC 57.778 45.455 0.00 0.00 0.00 4.30
1722 1739 2.113860 ACACATTGATCCAACCCTCG 57.886 50.000 0.00 0.00 0.00 4.63
1723 1740 0.734889 CACATTGATCCAACCCTCGC 59.265 55.000 0.00 0.00 0.00 5.03
1724 1741 0.744414 ACATTGATCCAACCCTCGCG 60.744 55.000 0.00 0.00 0.00 5.87
1725 1742 0.461870 CATTGATCCAACCCTCGCGA 60.462 55.000 9.26 9.26 0.00 5.87
1726 1743 0.179073 ATTGATCCAACCCTCGCGAG 60.179 55.000 29.06 29.06 0.00 5.03
1735 1752 2.185350 CCTCGCGAGGCTCATTGT 59.815 61.111 39.83 0.00 42.44 2.71
1736 1753 1.437573 CCTCGCGAGGCTCATTGTA 59.562 57.895 39.83 0.00 42.44 2.41
1737 1754 0.872021 CCTCGCGAGGCTCATTGTAC 60.872 60.000 39.83 0.00 42.44 2.90
1738 1755 0.179137 CTCGCGAGGCTCATTGTACA 60.179 55.000 28.40 0.00 0.00 2.90
1739 1756 0.245266 TCGCGAGGCTCATTGTACAA 59.755 50.000 15.95 11.41 0.00 2.41
1740 1757 0.647410 CGCGAGGCTCATTGTACAAG 59.353 55.000 15.95 6.58 0.00 3.16
1741 1758 1.009829 GCGAGGCTCATTGTACAAGG 58.990 55.000 13.96 13.96 0.00 3.61
1742 1759 1.009829 CGAGGCTCATTGTACAAGGC 58.990 55.000 15.24 16.42 35.94 4.35
1743 1760 1.009829 GAGGCTCATTGTACAAGGCG 58.990 55.000 15.24 10.53 40.27 5.52
1744 1761 1.026718 AGGCTCATTGTACAAGGCGC 61.027 55.000 23.08 23.08 40.27 6.53
1745 1762 1.026718 GGCTCATTGTACAAGGCGCT 61.027 55.000 27.84 4.16 33.88 5.92
1746 1763 1.651987 GCTCATTGTACAAGGCGCTA 58.348 50.000 23.66 3.91 31.15 4.26
1747 1764 1.327764 GCTCATTGTACAAGGCGCTAC 59.672 52.381 23.66 1.93 31.15 3.58
1748 1765 2.616960 CTCATTGTACAAGGCGCTACA 58.383 47.619 15.24 5.09 0.00 2.74
1749 1766 3.000041 CTCATTGTACAAGGCGCTACAA 59.000 45.455 18.58 18.58 37.29 2.41
1750 1767 3.605634 TCATTGTACAAGGCGCTACAAT 58.394 40.909 20.77 20.77 41.99 2.71
1751 1768 4.760878 TCATTGTACAAGGCGCTACAATA 58.239 39.130 24.00 14.24 40.19 1.90
1752 1769 5.364778 TCATTGTACAAGGCGCTACAATAT 58.635 37.500 24.00 9.11 40.19 1.28
1753 1770 6.517605 TCATTGTACAAGGCGCTACAATATA 58.482 36.000 24.00 16.08 40.19 0.86
1754 1771 6.987404 TCATTGTACAAGGCGCTACAATATAA 59.013 34.615 24.00 14.32 40.19 0.98
1755 1772 7.659799 TCATTGTACAAGGCGCTACAATATAAT 59.340 33.333 24.00 11.61 40.19 1.28
1756 1773 6.779115 TGTACAAGGCGCTACAATATAATG 57.221 37.500 7.64 0.00 0.00 1.90
1757 1774 6.517605 TGTACAAGGCGCTACAATATAATGA 58.482 36.000 7.64 0.00 0.00 2.57
1758 1775 5.924475 ACAAGGCGCTACAATATAATGAC 57.076 39.130 7.64 0.00 0.00 3.06
1759 1776 5.611374 ACAAGGCGCTACAATATAATGACT 58.389 37.500 7.64 0.00 0.00 3.41
1760 1777 5.466728 ACAAGGCGCTACAATATAATGACTG 59.533 40.000 7.64 0.00 0.00 3.51
1761 1778 3.997021 AGGCGCTACAATATAATGACTGC 59.003 43.478 7.64 0.00 0.00 4.40
1762 1779 3.125316 GGCGCTACAATATAATGACTGCC 59.875 47.826 7.64 0.00 0.00 4.85
1763 1780 3.125316 GCGCTACAATATAATGACTGCCC 59.875 47.826 0.00 0.00 0.00 5.36
1764 1781 3.367932 CGCTACAATATAATGACTGCCCG 59.632 47.826 0.00 0.00 0.00 6.13
1765 1782 3.684788 GCTACAATATAATGACTGCCCGG 59.315 47.826 0.00 0.00 0.00 5.73
1766 1783 3.140325 ACAATATAATGACTGCCCGGG 57.860 47.619 19.09 19.09 0.00 5.73
1767 1784 1.812571 CAATATAATGACTGCCCGGGC 59.187 52.381 39.40 39.40 42.35 6.13
1768 1785 0.328258 ATATAATGACTGCCCGGGCC 59.672 55.000 41.75 27.12 41.09 5.80
1769 1786 1.057275 TATAATGACTGCCCGGGCCA 61.057 55.000 41.75 31.84 41.09 5.36
1770 1787 1.932156 ATAATGACTGCCCGGGCCAA 61.932 55.000 41.75 24.44 41.09 4.52
1771 1788 2.830186 TAATGACTGCCCGGGCCAAC 62.830 60.000 41.75 29.89 41.09 3.77
1773 1790 4.660938 GACTGCCCGGGCCAACTT 62.661 66.667 41.75 21.42 41.09 2.66
1774 1791 3.253838 ACTGCCCGGGCCAACTTA 61.254 61.111 41.75 21.99 41.09 2.24
1775 1792 2.438434 CTGCCCGGGCCAACTTAG 60.438 66.667 41.75 27.21 41.09 2.18
1776 1793 2.931105 TGCCCGGGCCAACTTAGA 60.931 61.111 41.75 19.10 41.09 2.10
1777 1794 2.124695 GCCCGGGCCAACTTAGAG 60.125 66.667 36.64 0.00 34.56 2.43
1778 1795 2.124695 CCCGGGCCAACTTAGAGC 60.125 66.667 8.08 0.00 0.00 4.09
1779 1796 2.668632 CCGGGCCAACTTAGAGCA 59.331 61.111 4.39 0.00 0.00 4.26
1780 1797 1.224592 CCGGGCCAACTTAGAGCAT 59.775 57.895 4.39 0.00 0.00 3.79
1781 1798 0.815615 CCGGGCCAACTTAGAGCATC 60.816 60.000 4.39 0.00 0.00 3.91
1795 1812 2.131183 GAGCATCTAGAACATCCGTGC 58.869 52.381 0.00 0.00 0.00 5.34
1796 1813 1.759445 AGCATCTAGAACATCCGTGCT 59.241 47.619 8.59 8.59 36.69 4.40
1797 1814 2.131183 GCATCTAGAACATCCGTGCTC 58.869 52.381 0.00 0.00 31.42 4.26
1798 1815 2.481969 GCATCTAGAACATCCGTGCTCA 60.482 50.000 0.00 0.00 31.42 4.26
1799 1816 3.801638 GCATCTAGAACATCCGTGCTCAT 60.802 47.826 0.00 0.00 31.42 2.90
1800 1817 4.559502 GCATCTAGAACATCCGTGCTCATA 60.560 45.833 0.00 0.00 31.42 2.15
1801 1818 5.718146 CATCTAGAACATCCGTGCTCATAT 58.282 41.667 0.00 0.00 31.42 1.78
1802 1819 6.625960 GCATCTAGAACATCCGTGCTCATATA 60.626 42.308 0.00 0.00 31.42 0.86
1803 1820 7.487484 CATCTAGAACATCCGTGCTCATATAT 58.513 38.462 0.00 0.00 31.42 0.86
1804 1821 6.856895 TCTAGAACATCCGTGCTCATATATG 58.143 40.000 6.36 6.36 31.42 1.78
1805 1822 5.474578 AGAACATCCGTGCTCATATATGT 57.525 39.130 12.42 0.00 0.00 2.29
1806 1823 5.473931 AGAACATCCGTGCTCATATATGTC 58.526 41.667 12.42 6.69 0.00 3.06
1807 1824 4.193826 ACATCCGTGCTCATATATGTCC 57.806 45.455 12.42 5.68 0.00 4.02
1808 1825 3.578282 ACATCCGTGCTCATATATGTCCA 59.422 43.478 12.42 8.02 0.00 4.02
1809 1826 4.223700 ACATCCGTGCTCATATATGTCCAT 59.776 41.667 12.42 0.00 0.00 3.41
1810 1827 4.192429 TCCGTGCTCATATATGTCCATG 57.808 45.455 12.42 13.97 0.00 3.66
1811 1828 3.055891 TCCGTGCTCATATATGTCCATGG 60.056 47.826 24.89 24.89 37.36 3.66
1812 1829 3.055891 CCGTGCTCATATATGTCCATGGA 60.056 47.826 25.77 11.44 37.78 3.41
1813 1830 3.928992 CGTGCTCATATATGTCCATGGAC 59.071 47.826 33.97 33.97 44.77 4.02
1824 1841 4.939399 CATGGACAGCGATGGACA 57.061 55.556 5.32 3.50 0.00 4.02
1825 1842 2.387309 CATGGACAGCGATGGACAC 58.613 57.895 5.32 0.00 0.00 3.67
1826 1843 1.153568 ATGGACAGCGATGGACACG 60.154 57.895 5.32 0.00 0.00 4.49
1827 1844 1.888436 ATGGACAGCGATGGACACGT 61.888 55.000 5.32 0.00 0.00 4.49
1828 1845 1.805945 GGACAGCGATGGACACGTC 60.806 63.158 5.32 0.00 0.00 4.34
1829 1846 1.080772 GACAGCGATGGACACGTCA 60.081 57.895 5.32 0.00 32.73 4.35
1830 1847 0.458543 GACAGCGATGGACACGTCAT 60.459 55.000 5.32 0.00 32.73 3.06
1831 1848 0.458543 ACAGCGATGGACACGTCATC 60.459 55.000 5.32 5.81 38.04 2.92
1832 1849 0.458370 CAGCGATGGACACGTCATCA 60.458 55.000 14.05 0.96 40.58 3.07
1833 1850 0.461548 AGCGATGGACACGTCATCAT 59.538 50.000 14.05 5.39 40.58 2.45
1834 1851 1.134699 AGCGATGGACACGTCATCATT 60.135 47.619 14.05 1.39 40.58 2.57
1835 1852 1.665679 GCGATGGACACGTCATCATTT 59.334 47.619 14.05 0.00 40.58 2.32
1836 1853 2.285834 GCGATGGACACGTCATCATTTC 60.286 50.000 14.05 1.33 40.58 2.17
1837 1854 3.190079 CGATGGACACGTCATCATTTCT 58.810 45.455 14.05 0.00 40.58 2.52
1838 1855 3.243877 CGATGGACACGTCATCATTTCTC 59.756 47.826 14.05 0.00 40.58 2.87
1839 1856 2.972625 TGGACACGTCATCATTTCTCC 58.027 47.619 0.00 0.00 0.00 3.71
1840 1857 2.567169 TGGACACGTCATCATTTCTCCT 59.433 45.455 0.00 0.00 0.00 3.69
1841 1858 3.007940 TGGACACGTCATCATTTCTCCTT 59.992 43.478 0.00 0.00 0.00 3.36
1842 1859 3.619038 GGACACGTCATCATTTCTCCTTC 59.381 47.826 0.00 0.00 0.00 3.46
1843 1860 4.499183 GACACGTCATCATTTCTCCTTCT 58.501 43.478 0.00 0.00 0.00 2.85
1844 1861 4.499183 ACACGTCATCATTTCTCCTTCTC 58.501 43.478 0.00 0.00 0.00 2.87
1845 1862 3.868077 CACGTCATCATTTCTCCTTCTCC 59.132 47.826 0.00 0.00 0.00 3.71
1846 1863 3.515502 ACGTCATCATTTCTCCTTCTCCA 59.484 43.478 0.00 0.00 0.00 3.86
1847 1864 3.868077 CGTCATCATTTCTCCTTCTCCAC 59.132 47.826 0.00 0.00 0.00 4.02
1848 1865 4.621510 CGTCATCATTTCTCCTTCTCCACA 60.622 45.833 0.00 0.00 0.00 4.17
1849 1866 5.248640 GTCATCATTTCTCCTTCTCCACAA 58.751 41.667 0.00 0.00 0.00 3.33
1850 1867 5.123027 GTCATCATTTCTCCTTCTCCACAAC 59.877 44.000 0.00 0.00 0.00 3.32
1851 1868 4.021102 TCATTTCTCCTTCTCCACAACC 57.979 45.455 0.00 0.00 0.00 3.77
1852 1869 3.394274 TCATTTCTCCTTCTCCACAACCA 59.606 43.478 0.00 0.00 0.00 3.67
1853 1870 2.930826 TTCTCCTTCTCCACAACCAC 57.069 50.000 0.00 0.00 0.00 4.16
1854 1871 1.801242 TCTCCTTCTCCACAACCACA 58.199 50.000 0.00 0.00 0.00 4.17
1855 1872 1.416401 TCTCCTTCTCCACAACCACAC 59.584 52.381 0.00 0.00 0.00 3.82
1856 1873 1.417890 CTCCTTCTCCACAACCACACT 59.582 52.381 0.00 0.00 0.00 3.55
1857 1874 1.416401 TCCTTCTCCACAACCACACTC 59.584 52.381 0.00 0.00 0.00 3.51
1858 1875 1.543429 CCTTCTCCACAACCACACTCC 60.543 57.143 0.00 0.00 0.00 3.85
1859 1876 0.472471 TTCTCCACAACCACACTCCC 59.528 55.000 0.00 0.00 0.00 4.30
1860 1877 1.073199 CTCCACAACCACACTCCCC 59.927 63.158 0.00 0.00 0.00 4.81
1861 1878 1.694525 TCCACAACCACACTCCCCA 60.695 57.895 0.00 0.00 0.00 4.96
1862 1879 1.065410 TCCACAACCACACTCCCCAT 61.065 55.000 0.00 0.00 0.00 4.00
1863 1880 0.695924 CCACAACCACACTCCCCATA 59.304 55.000 0.00 0.00 0.00 2.74
1864 1881 1.284785 CCACAACCACACTCCCCATAT 59.715 52.381 0.00 0.00 0.00 1.78
1865 1882 2.291540 CCACAACCACACTCCCCATATT 60.292 50.000 0.00 0.00 0.00 1.28
1866 1883 3.016736 CACAACCACACTCCCCATATTC 58.983 50.000 0.00 0.00 0.00 1.75
1867 1884 2.288666 CAACCACACTCCCCATATTCG 58.711 52.381 0.00 0.00 0.00 3.34
1868 1885 1.874129 ACCACACTCCCCATATTCGA 58.126 50.000 0.00 0.00 0.00 3.71
1869 1886 2.193127 ACCACACTCCCCATATTCGAA 58.807 47.619 0.00 0.00 0.00 3.71
1870 1887 2.777692 ACCACACTCCCCATATTCGAAT 59.222 45.455 16.15 16.15 0.00 3.34
1871 1888 3.971305 ACCACACTCCCCATATTCGAATA 59.029 43.478 19.63 19.63 0.00 1.75
1872 1889 4.597507 ACCACACTCCCCATATTCGAATAT 59.402 41.667 22.22 22.22 31.93 1.28
1873 1890 5.178797 CCACACTCCCCATATTCGAATATC 58.821 45.833 24.49 0.00 29.35 1.63
1874 1891 5.279960 CCACACTCCCCATATTCGAATATCA 60.280 44.000 24.49 4.64 29.35 2.15
1875 1892 6.230472 CACACTCCCCATATTCGAATATCAA 58.770 40.000 24.49 11.33 29.35 2.57
1876 1893 6.881065 CACACTCCCCATATTCGAATATCAAT 59.119 38.462 24.49 6.51 29.35 2.57
1877 1894 8.040727 CACACTCCCCATATTCGAATATCAATA 58.959 37.037 24.49 11.91 29.35 1.90
1878 1895 8.772250 ACACTCCCCATATTCGAATATCAATAT 58.228 33.333 24.49 5.44 29.35 1.28
1879 1896 9.265901 CACTCCCCATATTCGAATATCAATATC 57.734 37.037 24.49 0.00 29.35 1.63
1880 1897 8.992349 ACTCCCCATATTCGAATATCAATATCA 58.008 33.333 24.49 0.94 29.35 2.15
1881 1898 9.836864 CTCCCCATATTCGAATATCAATATCAA 57.163 33.333 24.49 0.20 29.35 2.57
1884 1901 9.888878 CCCATATTCGAATATCAATATCAATGC 57.111 33.333 24.49 0.00 29.35 3.56
1890 1907 9.844790 TTCGAATATCAATATCAATGCAAATCC 57.155 29.630 0.00 0.00 0.00 3.01
1891 1908 9.234827 TCGAATATCAATATCAATGCAAATCCT 57.765 29.630 0.00 0.00 0.00 3.24
1892 1909 9.850628 CGAATATCAATATCAATGCAAATCCTT 57.149 29.630 0.00 0.00 0.00 3.36
1901 1918 3.364442 CAAATCCTTGCACGCCCA 58.636 55.556 0.00 0.00 0.00 5.36
1902 1919 1.892338 CAAATCCTTGCACGCCCAT 59.108 52.632 0.00 0.00 0.00 4.00
1903 1920 0.179129 CAAATCCTTGCACGCCCATC 60.179 55.000 0.00 0.00 0.00 3.51
1904 1921 0.611618 AAATCCTTGCACGCCCATCA 60.612 50.000 0.00 0.00 0.00 3.07
1905 1922 0.396139 AATCCTTGCACGCCCATCAT 60.396 50.000 0.00 0.00 0.00 2.45
1906 1923 0.473755 ATCCTTGCACGCCCATCATA 59.526 50.000 0.00 0.00 0.00 2.15
1907 1924 0.473755 TCCTTGCACGCCCATCATAT 59.526 50.000 0.00 0.00 0.00 1.78
1908 1925 1.696884 TCCTTGCACGCCCATCATATA 59.303 47.619 0.00 0.00 0.00 0.86
1909 1926 2.079158 CCTTGCACGCCCATCATATAG 58.921 52.381 0.00 0.00 0.00 1.31
1910 1927 2.550855 CCTTGCACGCCCATCATATAGT 60.551 50.000 0.00 0.00 0.00 2.12
1911 1928 2.168326 TGCACGCCCATCATATAGTG 57.832 50.000 0.00 0.00 0.00 2.74
1912 1929 1.416030 TGCACGCCCATCATATAGTGT 59.584 47.619 0.00 0.00 32.74 3.55
1913 1930 2.630580 TGCACGCCCATCATATAGTGTA 59.369 45.455 0.00 0.00 32.74 2.90
1914 1931 3.070302 TGCACGCCCATCATATAGTGTAA 59.930 43.478 0.00 0.00 32.74 2.41
1915 1932 4.062293 GCACGCCCATCATATAGTGTAAA 58.938 43.478 0.00 0.00 32.74 2.01
1916 1933 4.695455 GCACGCCCATCATATAGTGTAAAT 59.305 41.667 0.00 0.00 32.74 1.40
1917 1934 5.390885 GCACGCCCATCATATAGTGTAAATG 60.391 44.000 0.00 0.00 32.74 2.32
1918 1935 4.695455 ACGCCCATCATATAGTGTAAATGC 59.305 41.667 0.00 0.00 0.00 3.56
1919 1936 4.694982 CGCCCATCATATAGTGTAAATGCA 59.305 41.667 0.00 0.00 0.00 3.96
1920 1937 5.390885 CGCCCATCATATAGTGTAAATGCAC 60.391 44.000 0.00 0.00 39.51 4.57
1921 1938 5.106157 GCCCATCATATAGTGTAAATGCACC 60.106 44.000 0.00 0.00 40.04 5.01
1922 1939 6.003326 CCCATCATATAGTGTAAATGCACCA 58.997 40.000 0.00 0.00 40.04 4.17
1923 1940 6.660521 CCCATCATATAGTGTAAATGCACCAT 59.339 38.462 0.00 0.00 40.04 3.55
2162 2182 2.786495 CCGGTGGAGACGAGGATGG 61.786 68.421 0.00 0.00 0.00 3.51
2201 2222 6.713731 TCCTTTTAAGGGGAAGTACATCTT 57.286 37.500 8.60 0.00 46.47 2.40
2308 2329 2.939640 GCCGTGAATCCACTATTGGTGT 60.940 50.000 0.00 0.00 44.35 4.16
2326 2347 4.697756 CCTTGAAGGCGGCGACCA 62.698 66.667 10.28 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.407393 TTGCATTCATTAAATCACCATCTGA 57.593 32.000 0.00 0.00 0.00 3.27
173 174 2.363038 CACAATTCGGGATCCATGCATT 59.637 45.455 15.23 4.71 0.00 3.56
282 283 6.458342 CCACAAAGTTTGTCTTACCAAGTCTC 60.458 42.308 18.34 0.00 43.23 3.36
292 293 4.081198 TCAATTGGCCACAAAGTTTGTCTT 60.081 37.500 18.34 3.46 43.23 3.01
467 469 5.702065 TTAGCATTGGTTCTACCCATACA 57.298 39.130 0.00 0.00 37.50 2.29
827 833 8.668510 AGATACCAAGTTGTTATAGCAATCAG 57.331 34.615 5.24 0.00 0.00 2.90
968 975 3.561313 GCTCCATCCCCTTGTTTTACTGA 60.561 47.826 0.00 0.00 0.00 3.41
1021 1028 3.005554 CGTGATCAAAGGAAGCATCAGT 58.994 45.455 0.00 0.00 0.00 3.41
1523 1540 9.088987 AGTCCTGAATGGTATTGTTGTTAATTT 57.911 29.630 0.00 0.00 37.07 1.82
1524 1541 8.650143 AGTCCTGAATGGTATTGTTGTTAATT 57.350 30.769 0.00 0.00 37.07 1.40
1525 1542 9.396022 CTAGTCCTGAATGGTATTGTTGTTAAT 57.604 33.333 0.00 0.00 37.07 1.40
1526 1543 8.380099 ACTAGTCCTGAATGGTATTGTTGTTAA 58.620 33.333 0.00 0.00 37.07 2.01
1527 1544 7.913789 ACTAGTCCTGAATGGTATTGTTGTTA 58.086 34.615 0.00 0.00 37.07 2.41
1528 1545 6.779860 ACTAGTCCTGAATGGTATTGTTGTT 58.220 36.000 0.00 0.00 37.07 2.83
1529 1546 6.374417 ACTAGTCCTGAATGGTATTGTTGT 57.626 37.500 0.00 0.00 37.07 3.32
1530 1547 7.106239 AGAACTAGTCCTGAATGGTATTGTTG 58.894 38.462 0.00 0.00 37.07 3.33
1531 1548 7.259088 AGAACTAGTCCTGAATGGTATTGTT 57.741 36.000 0.00 0.00 37.07 2.83
1532 1549 6.875972 AGAACTAGTCCTGAATGGTATTGT 57.124 37.500 0.00 0.00 37.07 2.71
1533 1550 6.540189 CCAAGAACTAGTCCTGAATGGTATTG 59.460 42.308 0.00 0.00 37.07 1.90
1534 1551 6.443849 TCCAAGAACTAGTCCTGAATGGTATT 59.556 38.462 0.00 0.00 37.07 1.89
1535 1552 5.964477 TCCAAGAACTAGTCCTGAATGGTAT 59.036 40.000 0.00 0.00 37.07 2.73
1536 1553 5.338632 TCCAAGAACTAGTCCTGAATGGTA 58.661 41.667 0.00 0.00 37.07 3.25
1537 1554 4.168101 TCCAAGAACTAGTCCTGAATGGT 58.832 43.478 0.00 0.00 37.07 3.55
1538 1555 4.383552 CCTCCAAGAACTAGTCCTGAATGG 60.384 50.000 0.00 0.00 37.10 3.16
1539 1556 4.764172 CCTCCAAGAACTAGTCCTGAATG 58.236 47.826 0.00 0.00 0.00 2.67
1540 1557 3.198853 GCCTCCAAGAACTAGTCCTGAAT 59.801 47.826 0.00 0.00 0.00 2.57
1541 1558 2.567615 GCCTCCAAGAACTAGTCCTGAA 59.432 50.000 0.00 0.00 0.00 3.02
1542 1559 2.180276 GCCTCCAAGAACTAGTCCTGA 58.820 52.381 0.00 0.00 0.00 3.86
1543 1560 1.902508 TGCCTCCAAGAACTAGTCCTG 59.097 52.381 0.00 0.00 0.00 3.86
1544 1561 2.327325 TGCCTCCAAGAACTAGTCCT 57.673 50.000 0.00 0.00 0.00 3.85
1545 1562 3.707102 AGTATGCCTCCAAGAACTAGTCC 59.293 47.826 0.00 0.00 0.00 3.85
1546 1563 5.128008 AGAAGTATGCCTCCAAGAACTAGTC 59.872 44.000 0.00 0.00 0.00 2.59
1547 1564 5.026790 AGAAGTATGCCTCCAAGAACTAGT 58.973 41.667 0.00 0.00 0.00 2.57
1548 1565 5.606348 AGAAGTATGCCTCCAAGAACTAG 57.394 43.478 0.00 0.00 0.00 2.57
1549 1566 8.005388 AGTATAGAAGTATGCCTCCAAGAACTA 58.995 37.037 0.00 0.00 0.00 2.24
1550 1567 6.841755 AGTATAGAAGTATGCCTCCAAGAACT 59.158 38.462 0.00 0.00 0.00 3.01
1551 1568 7.056844 AGTATAGAAGTATGCCTCCAAGAAC 57.943 40.000 0.00 0.00 0.00 3.01
1552 1569 6.267928 GGAGTATAGAAGTATGCCTCCAAGAA 59.732 42.308 0.00 0.00 37.69 2.52
1553 1570 5.775701 GGAGTATAGAAGTATGCCTCCAAGA 59.224 44.000 0.00 0.00 37.69 3.02
1554 1571 5.540337 TGGAGTATAGAAGTATGCCTCCAAG 59.460 44.000 0.00 0.00 41.05 3.61
1555 1572 5.464069 TGGAGTATAGAAGTATGCCTCCAA 58.536 41.667 0.00 0.00 41.05 3.53
1556 1573 5.074746 TGGAGTATAGAAGTATGCCTCCA 57.925 43.478 0.00 0.00 41.38 3.86
1557 1574 5.326069 TCTGGAGTATAGAAGTATGCCTCC 58.674 45.833 0.00 0.00 37.97 4.30
1558 1575 6.902771 TTCTGGAGTATAGAAGTATGCCTC 57.097 41.667 0.00 0.00 31.04 4.70
1559 1576 7.676683 TTTTCTGGAGTATAGAAGTATGCCT 57.323 36.000 0.00 0.00 35.74 4.75
1581 1598 3.826729 GACCCATGGTGCTTAGAGTTTTT 59.173 43.478 11.73 0.00 35.25 1.94
1582 1599 3.181434 TGACCCATGGTGCTTAGAGTTTT 60.181 43.478 11.73 0.00 35.25 2.43
1583 1600 2.375174 TGACCCATGGTGCTTAGAGTTT 59.625 45.455 11.73 0.00 35.25 2.66
1584 1601 1.985159 TGACCCATGGTGCTTAGAGTT 59.015 47.619 11.73 0.00 35.25 3.01
1585 1602 1.279271 GTGACCCATGGTGCTTAGAGT 59.721 52.381 11.73 0.00 35.25 3.24
1586 1603 1.556911 AGTGACCCATGGTGCTTAGAG 59.443 52.381 11.73 0.00 35.25 2.43
1587 1604 1.555075 GAGTGACCCATGGTGCTTAGA 59.445 52.381 11.73 0.00 35.25 2.10
1588 1605 1.407437 GGAGTGACCCATGGTGCTTAG 60.407 57.143 11.73 0.00 35.25 2.18
1589 1606 0.618458 GGAGTGACCCATGGTGCTTA 59.382 55.000 11.73 0.00 35.25 3.09
1590 1607 1.380302 GGAGTGACCCATGGTGCTT 59.620 57.895 11.73 0.00 35.25 3.91
1591 1608 2.959484 CGGAGTGACCCATGGTGCT 61.959 63.158 11.73 2.61 35.25 4.40
1592 1609 2.436646 CGGAGTGACCCATGGTGC 60.437 66.667 11.73 2.30 35.25 5.01
1593 1610 3.068881 ACGGAGTGACCCATGGTG 58.931 61.111 11.73 4.77 42.51 4.17
1604 1621 1.214589 CGGGTTCGAATCACGGAGT 59.785 57.895 11.19 0.00 42.82 3.85
1605 1622 0.525668 CTCGGGTTCGAATCACGGAG 60.526 60.000 11.19 13.81 45.47 4.63
1606 1623 1.246056 ACTCGGGTTCGAATCACGGA 61.246 55.000 11.19 8.73 45.47 4.69
1607 1624 1.076533 CACTCGGGTTCGAATCACGG 61.077 60.000 11.19 9.29 45.47 4.94
1608 1625 0.109458 TCACTCGGGTTCGAATCACG 60.109 55.000 11.19 12.74 45.47 4.35
1609 1626 1.630148 CTCACTCGGGTTCGAATCAC 58.370 55.000 11.19 0.30 45.47 3.06
1610 1627 0.108804 GCTCACTCGGGTTCGAATCA 60.109 55.000 11.19 0.00 45.47 2.57
1611 1628 0.173708 AGCTCACTCGGGTTCGAATC 59.826 55.000 0.00 0.00 45.47 2.52
1612 1629 1.405821 CTAGCTCACTCGGGTTCGAAT 59.594 52.381 0.00 0.00 45.47 3.34
1613 1630 0.809385 CTAGCTCACTCGGGTTCGAA 59.191 55.000 0.00 0.00 45.47 3.71
1614 1631 0.035725 TCTAGCTCACTCGGGTTCGA 60.036 55.000 0.00 0.00 43.86 3.71
1615 1632 1.025812 ATCTAGCTCACTCGGGTTCG 58.974 55.000 0.00 0.00 37.82 3.95
1616 1633 2.030628 GCTATCTAGCTCACTCGGGTTC 60.031 54.545 0.00 0.00 45.62 3.62
1617 1634 1.957877 GCTATCTAGCTCACTCGGGTT 59.042 52.381 0.00 0.00 45.62 4.11
1618 1635 1.611519 GCTATCTAGCTCACTCGGGT 58.388 55.000 0.00 0.00 45.62 5.28
1629 1646 9.244292 TGGTTAGGATAACACATAGCTATCTAG 57.756 37.037 2.34 0.00 0.00 2.43
1630 1647 9.596308 TTGGTTAGGATAACACATAGCTATCTA 57.404 33.333 2.34 0.00 0.00 1.98
1631 1648 8.492415 TTGGTTAGGATAACACATAGCTATCT 57.508 34.615 2.34 0.00 0.00 1.98
1653 1670 5.072329 AGAGAATATGGTGTCACCCTATTGG 59.928 44.000 27.62 0.00 38.58 3.16
1654 1671 6.179906 AGAGAATATGGTGTCACCCTATTG 57.820 41.667 27.62 0.00 38.58 1.90
1655 1672 6.270231 GGTAGAGAATATGGTGTCACCCTATT 59.730 42.308 24.55 24.55 40.32 1.73
1656 1673 5.780793 GGTAGAGAATATGGTGTCACCCTAT 59.219 44.000 19.57 15.76 37.50 2.57
1657 1674 5.103215 AGGTAGAGAATATGGTGTCACCCTA 60.103 44.000 19.57 14.11 37.50 3.53
1658 1675 3.967987 GGTAGAGAATATGGTGTCACCCT 59.032 47.826 19.57 12.22 37.50 4.34
1659 1676 3.967987 AGGTAGAGAATATGGTGTCACCC 59.032 47.826 19.57 3.32 37.50 4.61
1660 1677 4.649674 TCAGGTAGAGAATATGGTGTCACC 59.350 45.833 15.64 15.64 39.22 4.02
1661 1678 5.854010 TCAGGTAGAGAATATGGTGTCAC 57.146 43.478 0.00 0.00 0.00 3.67
1662 1679 6.867519 TTTCAGGTAGAGAATATGGTGTCA 57.132 37.500 0.00 0.00 0.00 3.58
1663 1680 8.207545 AGATTTTCAGGTAGAGAATATGGTGTC 58.792 37.037 0.00 0.00 31.73 3.67
1664 1681 8.095452 AGATTTTCAGGTAGAGAATATGGTGT 57.905 34.615 0.00 0.00 31.73 4.16
1665 1682 9.703892 CTAGATTTTCAGGTAGAGAATATGGTG 57.296 37.037 0.00 0.00 31.73 4.17
1666 1683 8.371699 GCTAGATTTTCAGGTAGAGAATATGGT 58.628 37.037 0.00 0.00 31.73 3.55
1667 1684 7.543868 CGCTAGATTTTCAGGTAGAGAATATGG 59.456 40.741 0.00 0.00 31.73 2.74
1668 1685 8.085296 ACGCTAGATTTTCAGGTAGAGAATATG 58.915 37.037 0.00 0.00 31.73 1.78
1669 1686 8.184304 ACGCTAGATTTTCAGGTAGAGAATAT 57.816 34.615 0.00 0.00 31.73 1.28
1670 1687 7.584122 ACGCTAGATTTTCAGGTAGAGAATA 57.416 36.000 0.00 0.00 31.73 1.75
1671 1688 6.472686 ACGCTAGATTTTCAGGTAGAGAAT 57.527 37.500 0.00 0.00 34.06 2.40
1672 1689 5.916661 ACGCTAGATTTTCAGGTAGAGAA 57.083 39.130 0.00 0.00 0.00 2.87
1673 1690 5.417894 TGAACGCTAGATTTTCAGGTAGAGA 59.582 40.000 0.00 0.00 0.00 3.10
1674 1691 5.651530 TGAACGCTAGATTTTCAGGTAGAG 58.348 41.667 0.00 0.00 0.00 2.43
1675 1692 5.654603 TGAACGCTAGATTTTCAGGTAGA 57.345 39.130 0.00 0.00 0.00 2.59
1676 1693 6.910536 AATGAACGCTAGATTTTCAGGTAG 57.089 37.500 0.00 0.00 32.91 3.18
1677 1694 7.553334 ACTAATGAACGCTAGATTTTCAGGTA 58.447 34.615 0.00 0.00 32.91 3.08
1678 1695 6.407202 ACTAATGAACGCTAGATTTTCAGGT 58.593 36.000 0.00 0.00 32.91 4.00
1679 1696 6.910536 ACTAATGAACGCTAGATTTTCAGG 57.089 37.500 0.00 0.00 32.91 3.86
1680 1697 8.321716 GTGTACTAATGAACGCTAGATTTTCAG 58.678 37.037 0.00 0.00 32.91 3.02
1681 1698 7.815549 TGTGTACTAATGAACGCTAGATTTTCA 59.184 33.333 0.00 0.00 33.89 2.69
1682 1699 8.181487 TGTGTACTAATGAACGCTAGATTTTC 57.819 34.615 0.00 0.00 0.00 2.29
1683 1700 8.718102 ATGTGTACTAATGAACGCTAGATTTT 57.282 30.769 0.00 0.00 0.00 1.82
1684 1701 8.604035 CAATGTGTACTAATGAACGCTAGATTT 58.396 33.333 0.00 0.00 0.00 2.17
1685 1702 7.979537 TCAATGTGTACTAATGAACGCTAGATT 59.020 33.333 0.00 0.00 0.00 2.40
1686 1703 7.489160 TCAATGTGTACTAATGAACGCTAGAT 58.511 34.615 0.00 0.00 0.00 1.98
1687 1704 6.859017 TCAATGTGTACTAATGAACGCTAGA 58.141 36.000 0.00 0.00 0.00 2.43
1688 1705 7.096023 GGATCAATGTGTACTAATGAACGCTAG 60.096 40.741 0.00 0.00 0.00 3.42
1689 1706 6.700081 GGATCAATGTGTACTAATGAACGCTA 59.300 38.462 0.00 0.00 0.00 4.26
1690 1707 5.523916 GGATCAATGTGTACTAATGAACGCT 59.476 40.000 0.00 0.00 0.00 5.07
1691 1708 5.293324 TGGATCAATGTGTACTAATGAACGC 59.707 40.000 0.00 0.00 0.00 4.84
1692 1709 6.902224 TGGATCAATGTGTACTAATGAACG 57.098 37.500 0.00 0.00 0.00 3.95
1693 1710 7.415206 GGGTTGGATCAATGTGTACTAATGAAC 60.415 40.741 0.00 0.00 0.00 3.18
1694 1711 6.601613 GGGTTGGATCAATGTGTACTAATGAA 59.398 38.462 0.00 0.00 0.00 2.57
1695 1712 6.069673 AGGGTTGGATCAATGTGTACTAATGA 60.070 38.462 0.00 0.00 0.00 2.57
1696 1713 6.122277 AGGGTTGGATCAATGTGTACTAATG 58.878 40.000 0.00 0.00 0.00 1.90
1697 1714 6.327386 AGGGTTGGATCAATGTGTACTAAT 57.673 37.500 0.00 0.00 0.00 1.73
1698 1715 5.625886 CGAGGGTTGGATCAATGTGTACTAA 60.626 44.000 0.00 0.00 0.00 2.24
1699 1716 4.142026 CGAGGGTTGGATCAATGTGTACTA 60.142 45.833 0.00 0.00 0.00 1.82
1700 1717 3.369471 CGAGGGTTGGATCAATGTGTACT 60.369 47.826 0.00 0.00 0.00 2.73
1701 1718 2.936498 CGAGGGTTGGATCAATGTGTAC 59.064 50.000 0.00 0.00 0.00 2.90
1702 1719 2.679639 GCGAGGGTTGGATCAATGTGTA 60.680 50.000 0.00 0.00 0.00 2.90
1703 1720 1.950484 GCGAGGGTTGGATCAATGTGT 60.950 52.381 0.00 0.00 0.00 3.72
1704 1721 0.734889 GCGAGGGTTGGATCAATGTG 59.265 55.000 0.00 0.00 0.00 3.21
1705 1722 0.744414 CGCGAGGGTTGGATCAATGT 60.744 55.000 0.00 0.00 0.00 2.71
1706 1723 0.461870 TCGCGAGGGTTGGATCAATG 60.462 55.000 3.71 0.00 0.00 2.82
1707 1724 0.179073 CTCGCGAGGGTTGGATCAAT 60.179 55.000 28.40 0.00 0.00 2.57
1708 1725 1.218047 CTCGCGAGGGTTGGATCAA 59.782 57.895 28.40 0.00 0.00 2.57
1709 1726 2.721167 CCTCGCGAGGGTTGGATCA 61.721 63.158 41.47 0.85 44.87 2.92
1710 1727 2.107141 CCTCGCGAGGGTTGGATC 59.893 66.667 41.47 0.00 44.87 3.36
1719 1736 0.179137 TGTACAATGAGCCTCGCGAG 60.179 55.000 29.06 29.06 0.00 5.03
1720 1737 0.245266 TTGTACAATGAGCCTCGCGA 59.755 50.000 9.26 9.26 0.00 5.87
1721 1738 0.647410 CTTGTACAATGAGCCTCGCG 59.353 55.000 9.13 0.00 0.00 5.87
1722 1739 1.009829 CCTTGTACAATGAGCCTCGC 58.990 55.000 9.13 0.00 0.00 5.03
1723 1740 1.009829 GCCTTGTACAATGAGCCTCG 58.990 55.000 14.26 0.00 0.00 4.63
1724 1741 1.009829 CGCCTTGTACAATGAGCCTC 58.990 55.000 14.26 0.00 0.00 4.70
1725 1742 1.026718 GCGCCTTGTACAATGAGCCT 61.027 55.000 22.65 0.00 0.00 4.58
1726 1743 1.026718 AGCGCCTTGTACAATGAGCC 61.027 55.000 27.01 14.71 33.71 4.70
1727 1744 1.327764 GTAGCGCCTTGTACAATGAGC 59.672 52.381 24.68 24.68 33.50 4.26
1728 1745 2.616960 TGTAGCGCCTTGTACAATGAG 58.383 47.619 14.26 11.86 0.00 2.90
1729 1746 2.753055 TGTAGCGCCTTGTACAATGA 57.247 45.000 14.26 0.00 0.00 2.57
1730 1747 5.673337 ATATTGTAGCGCCTTGTACAATG 57.327 39.130 28.87 7.68 45.30 2.82
1731 1748 7.659799 TCATTATATTGTAGCGCCTTGTACAAT 59.340 33.333 26.16 26.16 46.63 2.71
1732 1749 6.987404 TCATTATATTGTAGCGCCTTGTACAA 59.013 34.615 18.58 18.58 41.98 2.41
1733 1750 6.422701 GTCATTATATTGTAGCGCCTTGTACA 59.577 38.462 2.29 2.94 0.00 2.90
1734 1751 6.645415 AGTCATTATATTGTAGCGCCTTGTAC 59.355 38.462 2.29 0.00 0.00 2.90
1735 1752 6.645003 CAGTCATTATATTGTAGCGCCTTGTA 59.355 38.462 2.29 0.00 0.00 2.41
1736 1753 5.466728 CAGTCATTATATTGTAGCGCCTTGT 59.533 40.000 2.29 0.00 0.00 3.16
1737 1754 5.615544 GCAGTCATTATATTGTAGCGCCTTG 60.616 44.000 2.29 0.00 0.00 3.61
1738 1755 4.452455 GCAGTCATTATATTGTAGCGCCTT 59.548 41.667 2.29 0.00 0.00 4.35
1739 1756 3.997021 GCAGTCATTATATTGTAGCGCCT 59.003 43.478 2.29 0.00 0.00 5.52
1740 1757 3.125316 GGCAGTCATTATATTGTAGCGCC 59.875 47.826 2.29 0.00 0.00 6.53
1741 1758 3.125316 GGGCAGTCATTATATTGTAGCGC 59.875 47.826 0.00 0.00 0.00 5.92
1742 1759 3.367932 CGGGCAGTCATTATATTGTAGCG 59.632 47.826 0.00 0.00 0.00 4.26
1743 1760 3.684788 CCGGGCAGTCATTATATTGTAGC 59.315 47.826 0.00 0.00 0.00 3.58
1744 1761 4.253685 CCCGGGCAGTCATTATATTGTAG 58.746 47.826 8.08 0.00 0.00 2.74
1745 1762 3.558321 GCCCGGGCAGTCATTATATTGTA 60.558 47.826 40.73 0.00 41.49 2.41
1746 1763 2.814097 GCCCGGGCAGTCATTATATTGT 60.814 50.000 40.73 0.00 41.49 2.71
1747 1764 1.812571 GCCCGGGCAGTCATTATATTG 59.187 52.381 40.73 0.00 41.49 1.90
1748 1765 1.271926 GGCCCGGGCAGTCATTATATT 60.272 52.381 44.46 0.00 44.11 1.28
1749 1766 0.328258 GGCCCGGGCAGTCATTATAT 59.672 55.000 44.46 0.00 44.11 0.86
1750 1767 1.057275 TGGCCCGGGCAGTCATTATA 61.057 55.000 44.46 16.83 44.11 0.98
1751 1768 1.932156 TTGGCCCGGGCAGTCATTAT 61.932 55.000 44.46 0.00 44.11 1.28
1752 1769 2.607568 TTGGCCCGGGCAGTCATTA 61.608 57.895 44.46 18.32 44.11 1.90
1753 1770 3.978193 TTGGCCCGGGCAGTCATT 61.978 61.111 44.46 0.00 44.11 2.57
1754 1771 4.740822 GTTGGCCCGGGCAGTCAT 62.741 66.667 44.46 0.00 44.11 3.06
1756 1773 3.262448 TAAGTTGGCCCGGGCAGTC 62.262 63.158 44.46 31.23 44.11 3.51
1757 1774 3.253838 TAAGTTGGCCCGGGCAGT 61.254 61.111 44.46 26.76 44.11 4.40
1758 1775 2.438434 CTAAGTTGGCCCGGGCAG 60.438 66.667 44.46 28.92 44.11 4.85
1759 1776 2.931105 TCTAAGTTGGCCCGGGCA 60.931 61.111 44.46 28.54 44.11 5.36
1760 1777 2.124695 CTCTAAGTTGGCCCGGGC 60.125 66.667 38.57 38.57 41.06 6.13
1761 1778 2.124695 GCTCTAAGTTGGCCCGGG 60.125 66.667 19.09 19.09 0.00 5.73
1762 1779 0.815615 GATGCTCTAAGTTGGCCCGG 60.816 60.000 0.00 0.00 0.00 5.73
1763 1780 0.179000 AGATGCTCTAAGTTGGCCCG 59.821 55.000 0.00 0.00 0.00 6.13
1764 1781 2.700897 TCTAGATGCTCTAAGTTGGCCC 59.299 50.000 0.00 0.00 0.00 5.80
1765 1782 4.123506 GTTCTAGATGCTCTAAGTTGGCC 58.876 47.826 0.00 0.00 0.00 5.36
1766 1783 4.759782 TGTTCTAGATGCTCTAAGTTGGC 58.240 43.478 0.00 0.00 0.00 4.52
1767 1784 5.988561 GGATGTTCTAGATGCTCTAAGTTGG 59.011 44.000 0.00 0.00 0.00 3.77
1768 1785 5.689514 CGGATGTTCTAGATGCTCTAAGTTG 59.310 44.000 0.00 0.00 0.00 3.16
1769 1786 5.361285 ACGGATGTTCTAGATGCTCTAAGTT 59.639 40.000 0.00 0.00 0.00 2.66
1770 1787 4.890581 ACGGATGTTCTAGATGCTCTAAGT 59.109 41.667 0.00 0.00 0.00 2.24
1771 1788 5.218885 CACGGATGTTCTAGATGCTCTAAG 58.781 45.833 0.00 0.00 0.00 2.18
1772 1789 4.499865 GCACGGATGTTCTAGATGCTCTAA 60.500 45.833 5.22 0.00 0.00 2.10
1773 1790 3.004839 GCACGGATGTTCTAGATGCTCTA 59.995 47.826 5.22 0.00 0.00 2.43
1774 1791 2.223923 GCACGGATGTTCTAGATGCTCT 60.224 50.000 5.22 0.00 0.00 4.09
1775 1792 2.131183 GCACGGATGTTCTAGATGCTC 58.869 52.381 5.22 0.00 0.00 4.26
1776 1793 1.759445 AGCACGGATGTTCTAGATGCT 59.241 47.619 8.59 8.59 37.12 3.79
1777 1794 2.131183 GAGCACGGATGTTCTAGATGC 58.869 52.381 4.42 4.42 33.49 3.91
1778 1795 3.443099 TGAGCACGGATGTTCTAGATG 57.557 47.619 0.00 0.00 37.01 2.90
1779 1796 5.991933 ATATGAGCACGGATGTTCTAGAT 57.008 39.130 0.00 0.00 37.01 1.98
1780 1797 6.434340 ACATATATGAGCACGGATGTTCTAGA 59.566 38.462 19.63 0.00 37.01 2.43
1781 1798 6.625362 ACATATATGAGCACGGATGTTCTAG 58.375 40.000 19.63 0.00 37.01 2.43
1782 1799 6.350194 GGACATATATGAGCACGGATGTTCTA 60.350 42.308 19.63 0.00 37.01 2.10
1783 1800 5.473931 GACATATATGAGCACGGATGTTCT 58.526 41.667 19.63 0.00 37.01 3.01
1784 1801 4.627467 GGACATATATGAGCACGGATGTTC 59.373 45.833 19.63 1.82 36.64 3.18
1785 1802 4.040339 TGGACATATATGAGCACGGATGTT 59.960 41.667 19.63 0.00 0.00 2.71
1786 1803 3.578282 TGGACATATATGAGCACGGATGT 59.422 43.478 19.63 0.00 0.00 3.06
1787 1804 4.192429 TGGACATATATGAGCACGGATG 57.808 45.455 19.63 0.00 0.00 3.51
1788 1805 4.383444 CCATGGACATATATGAGCACGGAT 60.383 45.833 19.63 0.00 0.00 4.18
1789 1806 3.055891 CCATGGACATATATGAGCACGGA 60.056 47.826 19.63 0.00 0.00 4.69
1790 1807 3.055891 TCCATGGACATATATGAGCACGG 60.056 47.826 19.63 12.81 0.00 4.94
1791 1808 3.928992 GTCCATGGACATATATGAGCACG 59.071 47.826 35.21 4.77 44.02 5.34
1804 1821 1.522092 TCCATCGCTGTCCATGGAC 59.478 57.895 33.97 33.97 43.11 4.02
1805 1822 1.264045 TGTCCATCGCTGTCCATGGA 61.264 55.000 11.44 11.44 45.32 3.41
1806 1823 1.091771 GTGTCCATCGCTGTCCATGG 61.092 60.000 4.97 4.97 41.04 3.66
1807 1824 1.423721 CGTGTCCATCGCTGTCCATG 61.424 60.000 0.00 0.00 0.00 3.66
1808 1825 1.153568 CGTGTCCATCGCTGTCCAT 60.154 57.895 0.00 0.00 0.00 3.41
1809 1826 2.261361 CGTGTCCATCGCTGTCCA 59.739 61.111 0.00 0.00 0.00 4.02
1810 1827 1.805945 GACGTGTCCATCGCTGTCC 60.806 63.158 0.00 0.00 0.00 4.02
1811 1828 0.458543 ATGACGTGTCCATCGCTGTC 60.459 55.000 0.00 0.00 33.90 3.51
1812 1829 0.458543 GATGACGTGTCCATCGCTGT 60.459 55.000 0.00 0.00 32.23 4.40
1813 1830 0.458370 TGATGACGTGTCCATCGCTG 60.458 55.000 10.17 0.00 42.37 5.18
1814 1831 0.461548 ATGATGACGTGTCCATCGCT 59.538 50.000 10.17 0.00 42.37 4.93
1815 1832 1.290203 AATGATGACGTGTCCATCGC 58.710 50.000 10.17 0.00 42.37 4.58
1816 1833 3.190079 AGAAATGATGACGTGTCCATCG 58.810 45.455 10.17 0.00 42.37 3.84
1817 1834 3.557595 GGAGAAATGATGACGTGTCCATC 59.442 47.826 8.40 8.40 40.48 3.51
1818 1835 3.198635 AGGAGAAATGATGACGTGTCCAT 59.801 43.478 0.00 0.00 0.00 3.41
1819 1836 2.567169 AGGAGAAATGATGACGTGTCCA 59.433 45.455 0.00 0.00 0.00 4.02
1820 1837 3.252974 AGGAGAAATGATGACGTGTCC 57.747 47.619 0.00 0.00 0.00 4.02
1821 1838 4.499183 AGAAGGAGAAATGATGACGTGTC 58.501 43.478 0.00 0.00 0.00 3.67
1822 1839 4.499183 GAGAAGGAGAAATGATGACGTGT 58.501 43.478 0.00 0.00 0.00 4.49
1823 1840 3.868077 GGAGAAGGAGAAATGATGACGTG 59.132 47.826 0.00 0.00 0.00 4.49
1824 1841 3.515502 TGGAGAAGGAGAAATGATGACGT 59.484 43.478 0.00 0.00 0.00 4.34
1825 1842 3.868077 GTGGAGAAGGAGAAATGATGACG 59.132 47.826 0.00 0.00 0.00 4.35
1826 1843 4.836825 TGTGGAGAAGGAGAAATGATGAC 58.163 43.478 0.00 0.00 0.00 3.06
1827 1844 5.248640 GTTGTGGAGAAGGAGAAATGATGA 58.751 41.667 0.00 0.00 0.00 2.92
1828 1845 4.397417 GGTTGTGGAGAAGGAGAAATGATG 59.603 45.833 0.00 0.00 0.00 3.07
1829 1846 4.043310 TGGTTGTGGAGAAGGAGAAATGAT 59.957 41.667 0.00 0.00 0.00 2.45
1830 1847 3.394274 TGGTTGTGGAGAAGGAGAAATGA 59.606 43.478 0.00 0.00 0.00 2.57
1831 1848 3.503748 GTGGTTGTGGAGAAGGAGAAATG 59.496 47.826 0.00 0.00 0.00 2.32
1832 1849 3.138283 TGTGGTTGTGGAGAAGGAGAAAT 59.862 43.478 0.00 0.00 0.00 2.17
1833 1850 2.507886 TGTGGTTGTGGAGAAGGAGAAA 59.492 45.455 0.00 0.00 0.00 2.52
1834 1851 2.123589 TGTGGTTGTGGAGAAGGAGAA 58.876 47.619 0.00 0.00 0.00 2.87
1835 1852 1.416401 GTGTGGTTGTGGAGAAGGAGA 59.584 52.381 0.00 0.00 0.00 3.71
1836 1853 1.417890 AGTGTGGTTGTGGAGAAGGAG 59.582 52.381 0.00 0.00 0.00 3.69
1837 1854 1.416401 GAGTGTGGTTGTGGAGAAGGA 59.584 52.381 0.00 0.00 0.00 3.36
1838 1855 1.543429 GGAGTGTGGTTGTGGAGAAGG 60.543 57.143 0.00 0.00 0.00 3.46
1839 1856 1.543429 GGGAGTGTGGTTGTGGAGAAG 60.543 57.143 0.00 0.00 0.00 2.85
1840 1857 0.472471 GGGAGTGTGGTTGTGGAGAA 59.528 55.000 0.00 0.00 0.00 2.87
1841 1858 1.415672 GGGGAGTGTGGTTGTGGAGA 61.416 60.000 0.00 0.00 0.00 3.71
1842 1859 1.073199 GGGGAGTGTGGTTGTGGAG 59.927 63.158 0.00 0.00 0.00 3.86
1843 1860 1.065410 ATGGGGAGTGTGGTTGTGGA 61.065 55.000 0.00 0.00 0.00 4.02
1844 1861 0.695924 TATGGGGAGTGTGGTTGTGG 59.304 55.000 0.00 0.00 0.00 4.17
1845 1862 2.806945 ATATGGGGAGTGTGGTTGTG 57.193 50.000 0.00 0.00 0.00 3.33
1846 1863 2.355716 CGAATATGGGGAGTGTGGTTGT 60.356 50.000 0.00 0.00 0.00 3.32
1847 1864 2.093181 TCGAATATGGGGAGTGTGGTTG 60.093 50.000 0.00 0.00 0.00 3.77
1848 1865 2.193127 TCGAATATGGGGAGTGTGGTT 58.807 47.619 0.00 0.00 0.00 3.67
1849 1866 1.874129 TCGAATATGGGGAGTGTGGT 58.126 50.000 0.00 0.00 0.00 4.16
1850 1867 3.492102 ATTCGAATATGGGGAGTGTGG 57.508 47.619 9.39 0.00 0.00 4.17
1851 1868 5.793817 TGATATTCGAATATGGGGAGTGTG 58.206 41.667 30.36 0.00 31.96 3.82
1852 1869 6.433847 TTGATATTCGAATATGGGGAGTGT 57.566 37.500 30.36 8.42 31.96 3.55
1853 1870 9.265901 GATATTGATATTCGAATATGGGGAGTG 57.734 37.037 30.36 0.00 31.96 3.51
1854 1871 8.992349 TGATATTGATATTCGAATATGGGGAGT 58.008 33.333 30.36 14.32 31.96 3.85
1855 1872 9.836864 TTGATATTGATATTCGAATATGGGGAG 57.163 33.333 30.36 0.00 31.96 4.30
1858 1875 9.888878 GCATTGATATTGATATTCGAATATGGG 57.111 33.333 30.36 11.09 31.96 4.00
1864 1881 9.844790 GGATTTGCATTGATATTGATATTCGAA 57.155 29.630 0.00 0.00 0.00 3.71
1865 1882 9.234827 AGGATTTGCATTGATATTGATATTCGA 57.765 29.630 0.00 0.00 0.00 3.71
1866 1883 9.850628 AAGGATTTGCATTGATATTGATATTCG 57.149 29.630 0.00 0.00 0.00 3.34
1884 1901 0.179129 GATGGGCGTGCAAGGATTTG 60.179 55.000 0.79 0.00 37.36 2.32
1885 1902 0.611618 TGATGGGCGTGCAAGGATTT 60.612 50.000 0.79 0.00 0.00 2.17
1886 1903 0.396139 ATGATGGGCGTGCAAGGATT 60.396 50.000 0.79 0.00 0.00 3.01
1887 1904 0.473755 TATGATGGGCGTGCAAGGAT 59.526 50.000 0.79 0.00 0.00 3.24
1888 1905 0.473755 ATATGATGGGCGTGCAAGGA 59.526 50.000 0.79 0.00 0.00 3.36
1889 1906 2.079158 CTATATGATGGGCGTGCAAGG 58.921 52.381 0.79 0.00 0.00 3.61
1890 1907 2.481568 CACTATATGATGGGCGTGCAAG 59.518 50.000 0.00 0.00 0.00 4.01
1891 1908 2.158827 ACACTATATGATGGGCGTGCAA 60.159 45.455 0.00 0.00 0.00 4.08
1892 1909 1.416030 ACACTATATGATGGGCGTGCA 59.584 47.619 0.00 0.00 0.00 4.57
1893 1910 2.169832 ACACTATATGATGGGCGTGC 57.830 50.000 0.00 0.00 0.00 5.34
1894 1911 5.390885 GCATTTACACTATATGATGGGCGTG 60.391 44.000 0.00 0.00 0.00 5.34
1895 1912 4.695455 GCATTTACACTATATGATGGGCGT 59.305 41.667 0.00 0.00 0.00 5.68
1896 1913 4.694982 TGCATTTACACTATATGATGGGCG 59.305 41.667 0.00 0.00 0.00 6.13
1897 1914 5.106157 GGTGCATTTACACTATATGATGGGC 60.106 44.000 0.00 0.00 40.52 5.36
1898 1915 6.003326 TGGTGCATTTACACTATATGATGGG 58.997 40.000 0.00 0.00 40.52 4.00
1899 1916 7.692460 ATGGTGCATTTACACTATATGATGG 57.308 36.000 0.00 0.00 39.65 3.51
1900 1917 8.785946 TCAATGGTGCATTTACACTATATGATG 58.214 33.333 0.00 0.00 40.43 3.07
1901 1918 8.922931 TCAATGGTGCATTTACACTATATGAT 57.077 30.769 0.00 0.00 40.43 2.45
1902 1919 8.744568 TTCAATGGTGCATTTACACTATATGA 57.255 30.769 0.00 0.00 40.43 2.15
1903 1920 9.454585 CTTTCAATGGTGCATTTACACTATATG 57.545 33.333 0.00 0.00 40.43 1.78
1904 1921 8.632679 CCTTTCAATGGTGCATTTACACTATAT 58.367 33.333 0.00 0.00 40.43 0.86
1905 1922 7.831690 TCCTTTCAATGGTGCATTTACACTATA 59.168 33.333 0.00 0.00 40.43 1.31
1906 1923 6.663093 TCCTTTCAATGGTGCATTTACACTAT 59.337 34.615 0.00 0.00 42.81 2.12
1907 1924 6.007076 TCCTTTCAATGGTGCATTTACACTA 58.993 36.000 0.00 0.00 40.52 2.74
1908 1925 4.832266 TCCTTTCAATGGTGCATTTACACT 59.168 37.500 0.00 0.00 40.52 3.55
1909 1926 5.132897 TCCTTTCAATGGTGCATTTACAC 57.867 39.130 0.00 0.00 39.94 2.90
1910 1927 5.392919 CGATCCTTTCAATGGTGCATTTACA 60.393 40.000 0.00 0.00 31.05 2.41
1911 1928 5.036737 CGATCCTTTCAATGGTGCATTTAC 58.963 41.667 0.00 0.00 31.05 2.01
1912 1929 4.946772 TCGATCCTTTCAATGGTGCATTTA 59.053 37.500 0.00 0.00 31.05 1.40
1913 1930 3.763360 TCGATCCTTTCAATGGTGCATTT 59.237 39.130 0.00 0.00 31.05 2.32
1914 1931 3.355378 TCGATCCTTTCAATGGTGCATT 58.645 40.909 0.00 0.00 34.04 3.56
1915 1932 3.003394 TCGATCCTTTCAATGGTGCAT 57.997 42.857 0.00 0.00 0.00 3.96
1916 1933 2.488204 TCGATCCTTTCAATGGTGCA 57.512 45.000 0.00 0.00 0.00 4.57
1917 1934 5.934625 ACTATATCGATCCTTTCAATGGTGC 59.065 40.000 0.00 0.00 0.00 5.01
1918 1935 7.657354 TCAACTATATCGATCCTTTCAATGGTG 59.343 37.037 0.00 0.00 0.00 4.17
1919 1936 7.657761 GTCAACTATATCGATCCTTTCAATGGT 59.342 37.037 0.00 0.00 0.00 3.55
1920 1937 7.875041 AGTCAACTATATCGATCCTTTCAATGG 59.125 37.037 0.00 0.00 0.00 3.16
1921 1938 8.824159 AGTCAACTATATCGATCCTTTCAATG 57.176 34.615 0.00 0.00 0.00 2.82
1923 1940 9.350951 TCTAGTCAACTATATCGATCCTTTCAA 57.649 33.333 0.00 0.00 0.00 2.69
1971 1991 9.710900 ATTGGTAAAGAAGAGCTTAAAAATTGG 57.289 29.630 0.00 0.00 35.24 3.16
1985 2005 9.914923 GTTGCAAAGTTTAAATTGGTAAAGAAG 57.085 29.630 0.00 0.00 0.00 2.85
2197 2218 1.135083 CCACACCGCTCTAACGAAGAT 60.135 52.381 0.00 0.00 32.41 2.40
2201 2222 1.592400 CCTCCACACCGCTCTAACGA 61.592 60.000 0.00 0.00 34.06 3.85
2308 2329 4.388499 GGTCGCCGCCTTCAAGGA 62.388 66.667 7.98 0.00 37.67 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.