Multiple sequence alignment - TraesCS2B01G275300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G275300 chr2B 100.000 2378 0 0 1 2378 379882274 379879897 0.000000e+00 4392.0
1 TraesCS2B01G275300 chr2B 91.601 381 31 1 1 381 321855360 321854981 2.090000e-145 525.0
2 TraesCS2B01G275300 chr2B 91.339 381 32 1 1 381 212030524 212030145 9.740000e-144 520.0
3 TraesCS2B01G275300 chr2A 88.055 1599 86 41 555 2121 425870379 425868854 0.000000e+00 1797.0
4 TraesCS2B01G275300 chr2A 90.948 232 17 3 2131 2359 425867652 425867422 2.300000e-80 309.0
5 TraesCS2B01G275300 chr2D 98.139 806 13 2 1571 2375 312027194 312027998 0.000000e+00 1404.0
6 TraesCS2B01G275300 chr2D 89.148 857 29 13 738 1570 312026349 312027165 0.000000e+00 1009.0
7 TraesCS2B01G275300 chr2D 91.099 382 32 2 1 381 587575127 587574747 1.260000e-142 516.0
8 TraesCS2B01G275300 chr2D 89.062 256 25 1 408 663 312026032 312026284 4.930000e-82 315.0
9 TraesCS2B01G275300 chr7D 92.651 381 27 1 1 381 77028898 77029277 4.470000e-152 547.0
10 TraesCS2B01G275300 chr7B 91.864 381 29 2 1 381 519991503 519991881 4.500000e-147 531.0
11 TraesCS2B01G275300 chr5D 91.864 381 30 1 1 381 344739962 344740341 4.500000e-147 531.0
12 TraesCS2B01G275300 chrUn 91.076 381 33 1 1 381 139223418 139223039 4.530000e-142 514.0
13 TraesCS2B01G275300 chr4D 91.076 381 33 1 1 381 15037367 15036988 4.530000e-142 514.0
14 TraesCS2B01G275300 chr4D 88.000 75 6 3 1307 1378 111140464 111140538 4.210000e-13 86.1
15 TraesCS2B01G275300 chr3D 91.076 381 33 1 1 381 380051619 380051240 4.530000e-142 514.0
16 TraesCS2B01G275300 chr4B 88.000 75 6 3 1307 1378 172321291 172321365 4.210000e-13 86.1
17 TraesCS2B01G275300 chr4A 88.000 75 6 3 1307 1378 465790441 465790367 4.210000e-13 86.1
18 TraesCS2B01G275300 chr1A 90.741 54 5 0 2282 2335 522484563 522484616 3.280000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G275300 chr2B 379879897 379882274 2377 True 4392.000000 4392 100.000000 1 2378 1 chr2B.!!$R3 2377
1 TraesCS2B01G275300 chr2A 425867422 425870379 2957 True 1053.000000 1797 89.501500 555 2359 2 chr2A.!!$R1 1804
2 TraesCS2B01G275300 chr2D 312026032 312027998 1966 False 909.333333 1404 92.116333 408 2375 3 chr2D.!!$F1 1967

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.035439 AGCCGGACACTGTTTATGGG 60.035 55.0 5.05 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1379 1406 0.106708 TGGACGCAGATATGAAGGCC 59.893 55.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.788672 CCCAGAGGCGCTTTAAGAT 57.211 52.632 7.64 0.00 0.00 2.40
27 28 1.587547 CCCAGAGGCGCTTTAAGATC 58.412 55.000 7.64 0.00 0.00 2.75
28 29 1.587547 CCAGAGGCGCTTTAAGATCC 58.412 55.000 7.64 0.00 0.00 3.36
29 30 1.212616 CAGAGGCGCTTTAAGATCCG 58.787 55.000 7.64 0.00 0.00 4.18
30 31 0.824759 AGAGGCGCTTTAAGATCCGT 59.175 50.000 7.64 0.00 0.00 4.69
31 32 2.029623 AGAGGCGCTTTAAGATCCGTA 58.970 47.619 7.64 0.00 0.00 4.02
32 33 2.429610 AGAGGCGCTTTAAGATCCGTAA 59.570 45.455 7.64 0.00 0.00 3.18
33 34 2.795470 GAGGCGCTTTAAGATCCGTAAG 59.205 50.000 7.64 0.00 0.00 2.34
34 35 2.429610 AGGCGCTTTAAGATCCGTAAGA 59.570 45.455 7.64 0.00 43.02 2.10
35 36 2.795470 GGCGCTTTAAGATCCGTAAGAG 59.205 50.000 7.64 0.00 43.02 2.85
36 37 3.490419 GGCGCTTTAAGATCCGTAAGAGA 60.490 47.826 7.64 0.00 43.02 3.10
37 38 4.299978 GCGCTTTAAGATCCGTAAGAGAT 58.700 43.478 0.00 0.00 43.02 2.75
38 39 5.458891 GCGCTTTAAGATCCGTAAGAGATA 58.541 41.667 0.00 0.00 43.02 1.98
39 40 5.919141 GCGCTTTAAGATCCGTAAGAGATAA 59.081 40.000 0.00 0.00 43.02 1.75
40 41 6.420008 GCGCTTTAAGATCCGTAAGAGATAAA 59.580 38.462 0.00 0.00 43.02 1.40
41 42 7.567229 GCGCTTTAAGATCCGTAAGAGATAAAC 60.567 40.741 0.00 0.00 43.02 2.01
42 43 7.096147 CGCTTTAAGATCCGTAAGAGATAAACC 60.096 40.741 0.00 0.00 43.02 3.27
43 44 7.709613 GCTTTAAGATCCGTAAGAGATAAACCA 59.290 37.037 0.00 0.00 43.02 3.67
44 45 9.765795 CTTTAAGATCCGTAAGAGATAAACCAT 57.234 33.333 0.00 0.00 43.02 3.55
45 46 9.760077 TTTAAGATCCGTAAGAGATAAACCATC 57.240 33.333 0.00 0.00 43.02 3.51
46 47 6.978674 AGATCCGTAAGAGATAAACCATCA 57.021 37.500 0.00 0.00 43.02 3.07
47 48 7.546250 AGATCCGTAAGAGATAAACCATCAT 57.454 36.000 0.00 0.00 43.02 2.45
48 49 8.651589 AGATCCGTAAGAGATAAACCATCATA 57.348 34.615 0.00 0.00 43.02 2.15
49 50 9.261035 AGATCCGTAAGAGATAAACCATCATAT 57.739 33.333 0.00 0.00 43.02 1.78
50 51 9.307121 GATCCGTAAGAGATAAACCATCATATG 57.693 37.037 0.00 0.00 43.02 1.78
51 52 8.190326 TCCGTAAGAGATAAACCATCATATGT 57.810 34.615 1.90 0.00 43.02 2.29
52 53 9.304335 TCCGTAAGAGATAAACCATCATATGTA 57.696 33.333 1.90 0.00 43.02 2.29
53 54 9.355215 CCGTAAGAGATAAACCATCATATGTAC 57.645 37.037 1.90 0.00 43.02 2.90
54 55 9.908152 CGTAAGAGATAAACCATCATATGTACA 57.092 33.333 0.00 0.00 43.02 2.90
58 59 9.935241 AGAGATAAACCATCATATGTACATGAC 57.065 33.333 18.81 0.00 37.74 3.06
59 60 9.935241 GAGATAAACCATCATATGTACATGACT 57.065 33.333 18.81 0.73 37.74 3.41
62 63 9.851686 ATAAACCATCATATGTACATGACTTGT 57.148 29.630 18.81 5.87 37.74 3.16
64 65 9.851686 AAACCATCATATGTACATGACTTGTAT 57.148 29.630 18.81 0.00 42.63 2.29
65 66 9.851686 AACCATCATATGTACATGACTTGTATT 57.148 29.630 18.81 1.78 42.63 1.89
66 67 9.276590 ACCATCATATGTACATGACTTGTATTG 57.723 33.333 18.81 3.30 42.63 1.90
67 68 9.276590 CCATCATATGTACATGACTTGTATTGT 57.723 33.333 18.81 0.00 42.63 2.71
72 73 6.978343 TGTACATGACTTGTATTGTAAGGC 57.022 37.500 0.00 0.00 42.63 4.35
73 74 6.468543 TGTACATGACTTGTATTGTAAGGCA 58.531 36.000 0.00 0.00 46.41 4.75
74 75 6.937465 TGTACATGACTTGTATTGTAAGGCAA 59.063 34.615 0.00 0.00 45.57 4.52
75 76 6.500684 ACATGACTTGTATTGTAAGGCAAG 57.499 37.500 0.00 0.00 45.57 4.01
76 77 6.237901 ACATGACTTGTATTGTAAGGCAAGA 58.762 36.000 0.00 0.00 45.57 3.02
77 78 6.714810 ACATGACTTGTATTGTAAGGCAAGAA 59.285 34.615 0.00 0.00 45.57 2.52
78 79 7.394359 ACATGACTTGTATTGTAAGGCAAGAAT 59.606 33.333 0.00 1.65 45.57 2.40
79 80 8.892723 CATGACTTGTATTGTAAGGCAAGAATA 58.107 33.333 9.68 0.00 45.57 1.75
80 81 8.492673 TGACTTGTATTGTAAGGCAAGAATAG 57.507 34.615 9.68 0.00 40.08 1.73
81 82 8.100791 TGACTTGTATTGTAAGGCAAGAATAGT 58.899 33.333 9.68 0.00 40.08 2.12
82 83 8.863872 ACTTGTATTGTAAGGCAAGAATAGTT 57.136 30.769 9.68 0.00 40.86 2.24
83 84 9.953565 ACTTGTATTGTAAGGCAAGAATAGTTA 57.046 29.630 9.68 0.00 40.86 2.24
86 87 9.817809 TGTATTGTAAGGCAAGAATAGTTAGAG 57.182 33.333 0.00 0.00 40.86 2.43
88 89 8.950208 ATTGTAAGGCAAGAATAGTTAGAGAC 57.050 34.615 0.00 0.00 40.86 3.36
89 90 6.875076 TGTAAGGCAAGAATAGTTAGAGACC 58.125 40.000 0.00 0.00 0.00 3.85
90 91 4.657436 AGGCAAGAATAGTTAGAGACCG 57.343 45.455 0.00 0.00 0.00 4.79
91 92 4.279145 AGGCAAGAATAGTTAGAGACCGA 58.721 43.478 0.00 0.00 0.00 4.69
92 93 4.339814 AGGCAAGAATAGTTAGAGACCGAG 59.660 45.833 0.00 0.00 0.00 4.63
93 94 4.045783 GCAAGAATAGTTAGAGACCGAGC 58.954 47.826 0.00 0.00 0.00 5.03
94 95 4.612943 CAAGAATAGTTAGAGACCGAGCC 58.387 47.826 0.00 0.00 0.00 4.70
95 96 2.879646 AGAATAGTTAGAGACCGAGCCG 59.120 50.000 0.00 0.00 0.00 5.52
106 107 4.979204 CGAGCCGGACACTGTTTA 57.021 55.556 5.05 0.00 0.00 2.01
107 108 3.436001 CGAGCCGGACACTGTTTAT 57.564 52.632 5.05 0.00 0.00 1.40
108 109 0.999406 CGAGCCGGACACTGTTTATG 59.001 55.000 5.05 0.00 0.00 1.90
109 110 1.369625 GAGCCGGACACTGTTTATGG 58.630 55.000 5.05 0.00 0.00 2.74
110 111 0.035439 AGCCGGACACTGTTTATGGG 60.035 55.000 5.05 0.00 0.00 4.00
111 112 1.654023 GCCGGACACTGTTTATGGGC 61.654 60.000 5.05 0.00 0.00 5.36
112 113 1.029947 CCGGACACTGTTTATGGGCC 61.030 60.000 0.00 0.00 0.00 5.80
113 114 1.366111 CGGACACTGTTTATGGGCCG 61.366 60.000 0.00 0.00 34.38 6.13
114 115 0.035820 GGACACTGTTTATGGGCCGA 60.036 55.000 0.00 0.00 0.00 5.54
115 116 1.408266 GGACACTGTTTATGGGCCGAT 60.408 52.381 5.29 5.29 0.00 4.18
116 117 1.940613 GACACTGTTTATGGGCCGATC 59.059 52.381 2.36 0.00 0.00 3.69
117 118 0.937304 CACTGTTTATGGGCCGATCG 59.063 55.000 8.51 8.51 0.00 3.69
118 119 0.179056 ACTGTTTATGGGCCGATCGG 60.179 55.000 30.03 30.03 38.57 4.18
119 120 0.884704 CTGTTTATGGGCCGATCGGG 60.885 60.000 33.98 16.82 39.58 5.14
120 121 1.338890 TGTTTATGGGCCGATCGGGA 61.339 55.000 33.98 1.37 38.47 5.14
121 122 0.883370 GTTTATGGGCCGATCGGGAC 60.883 60.000 33.98 18.94 46.65 4.46
122 123 1.052124 TTTATGGGCCGATCGGGACT 61.052 55.000 33.98 6.75 46.52 3.85
123 124 1.469335 TTATGGGCCGATCGGGACTC 61.469 60.000 33.98 19.57 46.52 3.36
124 125 2.367586 TATGGGCCGATCGGGACTCT 62.368 60.000 33.98 11.51 46.52 3.24
125 126 2.203451 GGGCCGATCGGGACTCTA 60.203 66.667 33.98 0.00 46.52 2.43
126 127 1.606889 GGGCCGATCGGGACTCTAT 60.607 63.158 33.98 0.00 46.52 1.98
127 128 1.587054 GGCCGATCGGGACTCTATG 59.413 63.158 33.98 7.06 42.52 2.23
128 129 0.894184 GGCCGATCGGGACTCTATGA 60.894 60.000 33.98 0.00 42.52 2.15
129 130 0.523966 GCCGATCGGGACTCTATGAG 59.476 60.000 33.98 5.76 38.47 2.90
130 131 0.523966 CCGATCGGGACTCTATGAGC 59.476 60.000 26.95 0.00 38.47 4.26
131 132 0.523966 CGATCGGGACTCTATGAGCC 59.476 60.000 7.38 0.00 32.04 4.70
132 133 0.523966 GATCGGGACTCTATGAGCCG 59.476 60.000 7.12 7.12 36.91 5.52
133 134 0.178987 ATCGGGACTCTATGAGCCGT 60.179 55.000 11.35 0.94 36.91 5.68
134 135 0.395311 TCGGGACTCTATGAGCCGTT 60.395 55.000 11.35 0.00 36.91 4.44
135 136 0.249073 CGGGACTCTATGAGCCGTTG 60.249 60.000 0.00 0.00 33.07 4.10
136 137 0.105039 GGGACTCTATGAGCCGTTGG 59.895 60.000 0.00 0.00 32.04 3.77
137 138 1.112113 GGACTCTATGAGCCGTTGGA 58.888 55.000 0.00 0.00 32.04 3.53
138 139 1.202428 GGACTCTATGAGCCGTTGGAC 60.202 57.143 0.00 0.00 32.04 4.02
139 140 0.456221 ACTCTATGAGCCGTTGGACG 59.544 55.000 0.00 0.00 35.75 4.79
140 141 0.456221 CTCTATGAGCCGTTGGACGT 59.544 55.000 0.00 0.00 40.58 4.34
141 142 0.454600 TCTATGAGCCGTTGGACGTC 59.545 55.000 7.13 7.13 40.58 4.34
142 143 0.866061 CTATGAGCCGTTGGACGTCG 60.866 60.000 9.92 0.00 40.58 5.12
143 144 1.307355 TATGAGCCGTTGGACGTCGA 61.307 55.000 9.92 1.86 40.58 4.20
144 145 2.804090 GAGCCGTTGGACGTCGAC 60.804 66.667 9.92 5.18 40.58 4.20
145 146 4.353437 AGCCGTTGGACGTCGACC 62.353 66.667 10.58 6.81 40.58 4.79
146 147 4.353437 GCCGTTGGACGTCGACCT 62.353 66.667 14.67 0.00 40.58 3.85
147 148 2.126580 CCGTTGGACGTCGACCTC 60.127 66.667 14.67 8.05 40.58 3.85
148 149 2.623915 CCGTTGGACGTCGACCTCT 61.624 63.158 14.67 0.00 40.58 3.69
149 150 1.442184 CGTTGGACGTCGACCTCTG 60.442 63.158 14.67 0.00 36.74 3.35
150 151 1.658673 GTTGGACGTCGACCTCTGT 59.341 57.895 14.67 1.14 0.00 3.41
151 152 0.877071 GTTGGACGTCGACCTCTGTA 59.123 55.000 14.67 0.00 0.00 2.74
152 153 1.471684 GTTGGACGTCGACCTCTGTAT 59.528 52.381 14.67 0.00 0.00 2.29
153 154 2.679837 GTTGGACGTCGACCTCTGTATA 59.320 50.000 14.67 0.00 0.00 1.47
154 155 3.204306 TGGACGTCGACCTCTGTATAT 57.796 47.619 14.67 0.00 0.00 0.86
155 156 4.341366 TGGACGTCGACCTCTGTATATA 57.659 45.455 14.67 0.00 0.00 0.86
156 157 4.707105 TGGACGTCGACCTCTGTATATAA 58.293 43.478 14.67 0.00 0.00 0.98
157 158 5.125356 TGGACGTCGACCTCTGTATATAAA 58.875 41.667 14.67 0.00 0.00 1.40
158 159 5.237996 TGGACGTCGACCTCTGTATATAAAG 59.762 44.000 14.67 0.00 0.00 1.85
159 160 5.334724 GGACGTCGACCTCTGTATATAAAGG 60.335 48.000 10.58 3.34 34.94 3.11
160 161 4.518211 ACGTCGACCTCTGTATATAAAGGG 59.482 45.833 10.58 0.00 32.97 3.95
161 162 4.758674 CGTCGACCTCTGTATATAAAGGGA 59.241 45.833 10.58 0.00 32.97 4.20
162 163 5.334724 CGTCGACCTCTGTATATAAAGGGAC 60.335 48.000 10.58 4.59 32.97 4.46
163 164 4.758674 TCGACCTCTGTATATAAAGGGACG 59.241 45.833 17.74 17.74 35.62 4.79
164 165 4.758674 CGACCTCTGTATATAAAGGGACGA 59.241 45.833 18.43 0.00 36.02 4.20
165 166 5.334724 CGACCTCTGTATATAAAGGGACGAC 60.335 48.000 18.43 0.00 36.02 4.34
166 167 4.831710 ACCTCTGTATATAAAGGGACGACC 59.168 45.833 0.83 0.00 40.67 4.79
186 187 3.741476 GCCGCAGTTCAGGGCAAG 61.741 66.667 0.00 0.00 46.13 4.01
187 188 2.281761 CCGCAGTTCAGGGCAAGT 60.282 61.111 0.00 0.00 0.00 3.16
188 189 1.003839 CCGCAGTTCAGGGCAAGTA 60.004 57.895 0.00 0.00 0.00 2.24
189 190 0.605319 CCGCAGTTCAGGGCAAGTAA 60.605 55.000 0.00 0.00 0.00 2.24
190 191 0.517316 CGCAGTTCAGGGCAAGTAAC 59.483 55.000 0.00 0.00 0.00 2.50
191 192 1.604604 GCAGTTCAGGGCAAGTAACA 58.395 50.000 0.00 0.00 0.00 2.41
192 193 2.162681 GCAGTTCAGGGCAAGTAACAT 58.837 47.619 0.00 0.00 0.00 2.71
193 194 2.162408 GCAGTTCAGGGCAAGTAACATC 59.838 50.000 0.00 0.00 0.00 3.06
194 195 3.411446 CAGTTCAGGGCAAGTAACATCA 58.589 45.455 0.00 0.00 0.00 3.07
195 196 3.438087 CAGTTCAGGGCAAGTAACATCAG 59.562 47.826 0.00 0.00 0.00 2.90
196 197 3.327757 AGTTCAGGGCAAGTAACATCAGA 59.672 43.478 0.00 0.00 0.00 3.27
197 198 4.018960 AGTTCAGGGCAAGTAACATCAGAT 60.019 41.667 0.00 0.00 0.00 2.90
198 199 4.142609 TCAGGGCAAGTAACATCAGATC 57.857 45.455 0.00 0.00 0.00 2.75
199 200 2.868583 CAGGGCAAGTAACATCAGATCG 59.131 50.000 0.00 0.00 0.00 3.69
200 201 2.766263 AGGGCAAGTAACATCAGATCGA 59.234 45.455 0.00 0.00 0.00 3.59
201 202 3.126831 GGGCAAGTAACATCAGATCGAG 58.873 50.000 0.00 0.00 0.00 4.04
202 203 3.181475 GGGCAAGTAACATCAGATCGAGA 60.181 47.826 0.00 0.00 0.00 4.04
203 204 4.047822 GGCAAGTAACATCAGATCGAGAG 58.952 47.826 0.00 0.00 0.00 3.20
204 205 3.489047 GCAAGTAACATCAGATCGAGAGC 59.511 47.826 0.00 0.00 0.00 4.09
205 206 4.736168 GCAAGTAACATCAGATCGAGAGCT 60.736 45.833 0.00 0.00 0.00 4.09
206 207 5.506483 GCAAGTAACATCAGATCGAGAGCTA 60.506 44.000 0.00 0.00 0.00 3.32
207 208 5.940192 AGTAACATCAGATCGAGAGCTAG 57.060 43.478 0.00 0.00 0.00 3.42
208 209 4.759693 AGTAACATCAGATCGAGAGCTAGG 59.240 45.833 0.00 0.00 0.00 3.02
209 210 3.222173 ACATCAGATCGAGAGCTAGGT 57.778 47.619 0.00 0.00 0.00 3.08
210 211 3.146066 ACATCAGATCGAGAGCTAGGTC 58.854 50.000 14.19 14.19 0.00 3.85
211 212 3.145286 CATCAGATCGAGAGCTAGGTCA 58.855 50.000 23.18 3.81 0.00 4.02
212 213 3.283259 TCAGATCGAGAGCTAGGTCAA 57.717 47.619 23.18 9.13 0.00 3.18
213 214 3.210227 TCAGATCGAGAGCTAGGTCAAG 58.790 50.000 23.18 15.78 0.00 3.02
214 215 2.948979 CAGATCGAGAGCTAGGTCAAGT 59.051 50.000 23.18 3.20 0.00 3.16
215 216 2.948979 AGATCGAGAGCTAGGTCAAGTG 59.051 50.000 23.18 9.95 0.00 3.16
216 217 2.491675 TCGAGAGCTAGGTCAAGTGA 57.508 50.000 23.18 11.94 0.00 3.41
217 218 3.006112 TCGAGAGCTAGGTCAAGTGAT 57.994 47.619 23.18 1.66 0.00 3.06
218 219 3.357203 TCGAGAGCTAGGTCAAGTGATT 58.643 45.455 23.18 0.90 0.00 2.57
219 220 3.764434 TCGAGAGCTAGGTCAAGTGATTT 59.236 43.478 23.18 0.14 0.00 2.17
220 221 4.109050 CGAGAGCTAGGTCAAGTGATTTC 58.891 47.826 23.18 8.76 0.00 2.17
221 222 4.380973 CGAGAGCTAGGTCAAGTGATTTCA 60.381 45.833 23.18 0.00 0.00 2.69
222 223 4.826556 AGAGCTAGGTCAAGTGATTTCAC 58.173 43.478 23.18 2.41 46.77 3.18
235 236 3.871594 GTGATTTCACTCCCTGGTAATCG 59.128 47.826 3.45 0.00 43.25 3.34
236 237 3.772572 TGATTTCACTCCCTGGTAATCGA 59.227 43.478 0.00 0.00 30.16 3.59
237 238 3.887621 TTTCACTCCCTGGTAATCGAG 57.112 47.619 0.00 0.00 0.00 4.04
238 239 2.820728 TCACTCCCTGGTAATCGAGA 57.179 50.000 4.24 0.00 0.00 4.04
239 240 2.376109 TCACTCCCTGGTAATCGAGAC 58.624 52.381 4.24 0.00 0.00 3.36
240 241 2.100197 CACTCCCTGGTAATCGAGACA 58.900 52.381 4.24 0.00 0.00 3.41
241 242 2.695666 CACTCCCTGGTAATCGAGACAT 59.304 50.000 4.24 0.00 0.00 3.06
242 243 3.889538 CACTCCCTGGTAATCGAGACATA 59.110 47.826 4.24 0.00 0.00 2.29
243 244 4.341235 CACTCCCTGGTAATCGAGACATAA 59.659 45.833 4.24 0.00 0.00 1.90
244 245 4.585162 ACTCCCTGGTAATCGAGACATAAG 59.415 45.833 4.24 0.00 0.00 1.73
245 246 3.321111 TCCCTGGTAATCGAGACATAAGC 59.679 47.826 0.00 0.00 0.00 3.09
246 247 3.069586 CCCTGGTAATCGAGACATAAGCA 59.930 47.826 0.00 0.00 0.00 3.91
247 248 4.442893 CCCTGGTAATCGAGACATAAGCAA 60.443 45.833 0.00 0.00 0.00 3.91
248 249 5.300752 CCTGGTAATCGAGACATAAGCAAT 58.699 41.667 0.00 0.00 0.00 3.56
249 250 5.406780 CCTGGTAATCGAGACATAAGCAATC 59.593 44.000 0.00 0.00 0.00 2.67
250 251 6.161855 TGGTAATCGAGACATAAGCAATCT 57.838 37.500 0.00 0.00 0.00 2.40
251 252 6.216569 TGGTAATCGAGACATAAGCAATCTC 58.783 40.000 0.00 0.00 36.35 2.75
252 253 6.183360 TGGTAATCGAGACATAAGCAATCTCA 60.183 38.462 0.00 0.00 39.09 3.27
253 254 6.144724 GGTAATCGAGACATAAGCAATCTCAC 59.855 42.308 0.00 0.00 39.09 3.51
254 255 4.991153 TCGAGACATAAGCAATCTCACT 57.009 40.909 0.00 0.00 39.09 3.41
255 256 4.926244 TCGAGACATAAGCAATCTCACTC 58.074 43.478 0.00 0.00 39.09 3.51
256 257 4.399303 TCGAGACATAAGCAATCTCACTCA 59.601 41.667 0.00 0.00 39.09 3.41
257 258 5.105063 CGAGACATAAGCAATCTCACTCAA 58.895 41.667 0.00 0.00 39.09 3.02
258 259 5.578336 CGAGACATAAGCAATCTCACTCAAA 59.422 40.000 0.00 0.00 39.09 2.69
259 260 6.091305 CGAGACATAAGCAATCTCACTCAAAA 59.909 38.462 0.00 0.00 39.09 2.44
260 261 7.138692 AGACATAAGCAATCTCACTCAAAAC 57.861 36.000 0.00 0.00 0.00 2.43
261 262 6.939163 AGACATAAGCAATCTCACTCAAAACT 59.061 34.615 0.00 0.00 0.00 2.66
262 263 6.906659 ACATAAGCAATCTCACTCAAAACTG 58.093 36.000 0.00 0.00 0.00 3.16
263 264 4.843220 AAGCAATCTCACTCAAAACTGG 57.157 40.909 0.00 0.00 0.00 4.00
264 265 4.090761 AGCAATCTCACTCAAAACTGGA 57.909 40.909 0.00 0.00 0.00 3.86
265 266 4.660168 AGCAATCTCACTCAAAACTGGAT 58.340 39.130 0.00 0.00 0.00 3.41
266 267 4.699257 AGCAATCTCACTCAAAACTGGATC 59.301 41.667 0.00 0.00 0.00 3.36
267 268 4.436584 GCAATCTCACTCAAAACTGGATCG 60.437 45.833 0.00 0.00 0.00 3.69
268 269 4.543590 ATCTCACTCAAAACTGGATCGT 57.456 40.909 0.00 0.00 0.00 3.73
269 270 5.661056 ATCTCACTCAAAACTGGATCGTA 57.339 39.130 0.00 0.00 0.00 3.43
270 271 5.661056 TCTCACTCAAAACTGGATCGTAT 57.339 39.130 0.00 0.00 0.00 3.06
271 272 5.410924 TCTCACTCAAAACTGGATCGTATG 58.589 41.667 0.00 0.00 0.00 2.39
272 273 3.932710 TCACTCAAAACTGGATCGTATGC 59.067 43.478 0.00 0.00 0.00 3.14
273 274 3.935203 CACTCAAAACTGGATCGTATGCT 59.065 43.478 0.00 0.00 0.00 3.79
274 275 4.033358 CACTCAAAACTGGATCGTATGCTC 59.967 45.833 0.00 0.00 0.00 4.26
275 276 4.081420 ACTCAAAACTGGATCGTATGCTCT 60.081 41.667 0.00 0.00 0.00 4.09
276 277 4.832248 TCAAAACTGGATCGTATGCTCTT 58.168 39.130 0.00 0.00 0.00 2.85
277 278 5.972935 TCAAAACTGGATCGTATGCTCTTA 58.027 37.500 0.00 0.00 0.00 2.10
278 279 5.810587 TCAAAACTGGATCGTATGCTCTTAC 59.189 40.000 0.00 0.00 0.00 2.34
279 280 4.323553 AACTGGATCGTATGCTCTTACC 57.676 45.455 0.00 0.00 0.00 2.85
280 281 3.567397 ACTGGATCGTATGCTCTTACCT 58.433 45.455 0.00 0.00 0.00 3.08
281 282 3.961408 ACTGGATCGTATGCTCTTACCTT 59.039 43.478 0.00 0.00 0.00 3.50
282 283 4.038162 ACTGGATCGTATGCTCTTACCTTC 59.962 45.833 0.00 0.00 0.00 3.46
283 284 3.958147 TGGATCGTATGCTCTTACCTTCA 59.042 43.478 0.00 0.00 0.00 3.02
284 285 4.202121 TGGATCGTATGCTCTTACCTTCAC 60.202 45.833 0.00 0.00 0.00 3.18
285 286 3.795623 TCGTATGCTCTTACCTTCACC 57.204 47.619 0.00 0.00 0.00 4.02
286 287 3.093814 TCGTATGCTCTTACCTTCACCA 58.906 45.455 0.00 0.00 0.00 4.17
287 288 3.704566 TCGTATGCTCTTACCTTCACCAT 59.295 43.478 0.00 0.00 0.00 3.55
288 289 4.891168 TCGTATGCTCTTACCTTCACCATA 59.109 41.667 0.00 0.00 0.00 2.74
289 290 5.361571 TCGTATGCTCTTACCTTCACCATAA 59.638 40.000 0.00 0.00 0.00 1.90
290 291 5.692204 CGTATGCTCTTACCTTCACCATAAG 59.308 44.000 0.00 0.00 0.00 1.73
296 297 1.152963 CCTTCACCATAAGGGGCCG 60.153 63.158 0.00 0.00 42.08 6.13
297 298 1.632018 CCTTCACCATAAGGGGCCGA 61.632 60.000 0.00 0.00 42.08 5.54
298 299 0.474184 CTTCACCATAAGGGGCCGAT 59.526 55.000 0.00 0.00 42.91 4.18
299 300 0.472471 TTCACCATAAGGGGCCGATC 59.528 55.000 0.00 0.00 42.91 3.69
300 301 1.073199 CACCATAAGGGGCCGATCC 59.927 63.158 0.00 0.00 42.91 3.36
301 302 1.385347 ACCATAAGGGGCCGATCCA 60.385 57.895 0.00 0.00 42.91 3.41
302 303 1.376466 CCATAAGGGGCCGATCCAG 59.624 63.158 0.00 0.00 36.21 3.86
303 304 1.418908 CCATAAGGGGCCGATCCAGT 61.419 60.000 0.00 0.00 36.21 4.00
304 305 1.348064 CATAAGGGGCCGATCCAGTA 58.652 55.000 0.00 0.00 36.21 2.74
305 306 1.909302 CATAAGGGGCCGATCCAGTAT 59.091 52.381 0.00 0.00 36.21 2.12
306 307 3.104512 CATAAGGGGCCGATCCAGTATA 58.895 50.000 0.00 0.00 36.21 1.47
307 308 2.112279 AAGGGGCCGATCCAGTATAA 57.888 50.000 0.00 0.00 36.21 0.98
308 309 2.112279 AGGGGCCGATCCAGTATAAA 57.888 50.000 0.00 0.00 36.21 1.40
309 310 1.697982 AGGGGCCGATCCAGTATAAAC 59.302 52.381 0.00 0.00 36.21 2.01
310 311 1.271217 GGGGCCGATCCAGTATAAACC 60.271 57.143 0.00 0.00 36.21 3.27
311 312 1.271217 GGGCCGATCCAGTATAAACCC 60.271 57.143 0.00 0.00 36.21 4.11
312 313 1.271217 GGCCGATCCAGTATAAACCCC 60.271 57.143 0.00 0.00 34.01 4.95
313 314 1.607251 GCCGATCCAGTATAAACCCCG 60.607 57.143 0.00 0.00 0.00 5.73
314 315 1.690352 CCGATCCAGTATAAACCCCGT 59.310 52.381 0.00 0.00 0.00 5.28
315 316 2.547218 CCGATCCAGTATAAACCCCGTG 60.547 54.545 0.00 0.00 0.00 4.94
316 317 2.101917 CGATCCAGTATAAACCCCGTGT 59.898 50.000 0.00 0.00 0.00 4.49
317 318 3.725490 GATCCAGTATAAACCCCGTGTC 58.275 50.000 0.00 0.00 0.00 3.67
318 319 1.832998 TCCAGTATAAACCCCGTGTCC 59.167 52.381 0.00 0.00 0.00 4.02
319 320 1.835531 CCAGTATAAACCCCGTGTCCT 59.164 52.381 0.00 0.00 0.00 3.85
320 321 2.237893 CCAGTATAAACCCCGTGTCCTT 59.762 50.000 0.00 0.00 0.00 3.36
321 322 3.307904 CCAGTATAAACCCCGTGTCCTTT 60.308 47.826 0.00 0.00 0.00 3.11
322 323 4.080975 CCAGTATAAACCCCGTGTCCTTTA 60.081 45.833 0.00 0.00 0.00 1.85
323 324 5.397109 CCAGTATAAACCCCGTGTCCTTTAT 60.397 44.000 0.00 0.00 0.00 1.40
324 325 5.756833 CAGTATAAACCCCGTGTCCTTTATC 59.243 44.000 0.00 0.00 0.00 1.75
325 326 2.502142 AAACCCCGTGTCCTTTATCC 57.498 50.000 0.00 0.00 0.00 2.59
326 327 1.665137 AACCCCGTGTCCTTTATCCT 58.335 50.000 0.00 0.00 0.00 3.24
327 328 0.909623 ACCCCGTGTCCTTTATCCTG 59.090 55.000 0.00 0.00 0.00 3.86
328 329 1.200519 CCCCGTGTCCTTTATCCTGA 58.799 55.000 0.00 0.00 0.00 3.86
329 330 1.768870 CCCCGTGTCCTTTATCCTGAT 59.231 52.381 0.00 0.00 0.00 2.90
330 331 2.172717 CCCCGTGTCCTTTATCCTGATT 59.827 50.000 0.00 0.00 0.00 2.57
331 332 3.389983 CCCCGTGTCCTTTATCCTGATTA 59.610 47.826 0.00 0.00 0.00 1.75
332 333 4.141574 CCCCGTGTCCTTTATCCTGATTAA 60.142 45.833 0.00 0.00 0.00 1.40
333 334 4.814771 CCCGTGTCCTTTATCCTGATTAAC 59.185 45.833 0.00 0.00 0.00 2.01
334 335 5.396436 CCCGTGTCCTTTATCCTGATTAACT 60.396 44.000 0.00 0.00 0.00 2.24
335 336 5.753921 CCGTGTCCTTTATCCTGATTAACTC 59.246 44.000 0.00 0.00 0.00 3.01
336 337 5.753921 CGTGTCCTTTATCCTGATTAACTCC 59.246 44.000 0.00 0.00 0.00 3.85
337 338 6.407074 CGTGTCCTTTATCCTGATTAACTCCT 60.407 42.308 0.00 0.00 0.00 3.69
338 339 7.339482 GTGTCCTTTATCCTGATTAACTCCTT 58.661 38.462 0.00 0.00 0.00 3.36
339 340 7.829706 GTGTCCTTTATCCTGATTAACTCCTTT 59.170 37.037 0.00 0.00 0.00 3.11
340 341 9.053472 TGTCCTTTATCCTGATTAACTCCTTTA 57.947 33.333 0.00 0.00 0.00 1.85
341 342 9.901172 GTCCTTTATCCTGATTAACTCCTTTAA 57.099 33.333 0.00 0.00 34.08 1.52
347 348 8.809468 ATCCTGATTAACTCCTTTAAACTTCC 57.191 34.615 0.00 0.00 33.26 3.46
348 349 7.985589 TCCTGATTAACTCCTTTAAACTTCCT 58.014 34.615 0.00 0.00 33.26 3.36
349 350 9.108111 TCCTGATTAACTCCTTTAAACTTCCTA 57.892 33.333 0.00 0.00 33.26 2.94
350 351 9.384764 CCTGATTAACTCCTTTAAACTTCCTAG 57.615 37.037 0.00 0.00 33.26 3.02
351 352 9.945904 CTGATTAACTCCTTTAAACTTCCTAGT 57.054 33.333 0.00 0.00 33.26 2.57
354 355 6.879276 AACTCCTTTAAACTTCCTAGTTGC 57.121 37.500 0.00 0.00 43.74 4.17
355 356 4.995487 ACTCCTTTAAACTTCCTAGTTGCG 59.005 41.667 0.00 0.00 43.74 4.85
356 357 5.217978 TCCTTTAAACTTCCTAGTTGCGA 57.782 39.130 0.00 0.00 43.74 5.10
357 358 5.801380 TCCTTTAAACTTCCTAGTTGCGAT 58.199 37.500 0.00 0.00 43.74 4.58
358 359 5.642063 TCCTTTAAACTTCCTAGTTGCGATG 59.358 40.000 0.00 0.00 43.74 3.84
359 360 5.163754 CCTTTAAACTTCCTAGTTGCGATGG 60.164 44.000 0.00 0.00 43.74 3.51
360 361 1.739067 AACTTCCTAGTTGCGATGGC 58.261 50.000 0.00 0.00 42.91 4.40
361 362 0.905357 ACTTCCTAGTTGCGATGGCT 59.095 50.000 0.15 0.00 40.82 4.75
362 363 1.134670 ACTTCCTAGTTGCGATGGCTC 60.135 52.381 0.15 0.00 40.82 4.70
363 364 0.178068 TTCCTAGTTGCGATGGCTCC 59.822 55.000 0.15 0.00 40.82 4.70
364 365 0.975556 TCCTAGTTGCGATGGCTCCA 60.976 55.000 0.15 0.00 40.82 3.86
365 366 0.811616 CCTAGTTGCGATGGCTCCAC 60.812 60.000 0.15 0.00 40.82 4.02
366 367 1.148157 CTAGTTGCGATGGCTCCACG 61.148 60.000 0.15 0.00 40.82 4.94
367 368 1.600511 TAGTTGCGATGGCTCCACGA 61.601 55.000 0.15 0.00 40.82 4.35
368 369 2.434185 TTGCGATGGCTCCACGAC 60.434 61.111 0.15 6.68 40.82 4.34
369 370 2.942796 TTGCGATGGCTCCACGACT 61.943 57.895 0.15 0.00 40.82 4.18
370 371 1.600511 TTGCGATGGCTCCACGACTA 61.601 55.000 0.15 2.46 40.82 2.59
371 372 1.141019 GCGATGGCTCCACGACTAA 59.859 57.895 12.62 0.00 35.83 2.24
372 373 0.872021 GCGATGGCTCCACGACTAAG 60.872 60.000 12.62 0.00 35.83 2.18
373 374 0.456221 CGATGGCTCCACGACTAAGT 59.544 55.000 0.00 0.00 0.00 2.24
374 375 1.534175 CGATGGCTCCACGACTAAGTC 60.534 57.143 0.00 0.00 0.00 3.01
375 376 0.824759 ATGGCTCCACGACTAAGTCC 59.175 55.000 0.00 0.00 0.00 3.85
376 377 0.251653 TGGCTCCACGACTAAGTCCT 60.252 55.000 0.00 0.00 0.00 3.85
377 378 0.896226 GGCTCCACGACTAAGTCCTT 59.104 55.000 0.00 0.00 0.00 3.36
378 379 1.275573 GGCTCCACGACTAAGTCCTTT 59.724 52.381 0.00 0.00 0.00 3.11
379 380 2.608268 GCTCCACGACTAAGTCCTTTC 58.392 52.381 0.00 0.00 0.00 2.62
380 381 2.029290 GCTCCACGACTAAGTCCTTTCA 60.029 50.000 0.00 0.00 0.00 2.69
381 382 3.368531 GCTCCACGACTAAGTCCTTTCAT 60.369 47.826 0.00 0.00 0.00 2.57
382 383 4.177026 CTCCACGACTAAGTCCTTTCATG 58.823 47.826 0.00 0.00 0.00 3.07
383 384 3.830178 TCCACGACTAAGTCCTTTCATGA 59.170 43.478 0.00 0.00 0.00 3.07
384 385 3.927142 CCACGACTAAGTCCTTTCATGAC 59.073 47.826 0.00 0.00 0.00 3.06
385 386 4.556233 CACGACTAAGTCCTTTCATGACA 58.444 43.478 0.00 0.00 35.15 3.58
386 387 4.988540 CACGACTAAGTCCTTTCATGACAA 59.011 41.667 0.00 0.00 35.15 3.18
387 388 5.639506 CACGACTAAGTCCTTTCATGACAAT 59.360 40.000 0.00 0.00 35.15 2.71
388 389 6.147821 CACGACTAAGTCCTTTCATGACAATT 59.852 38.462 0.00 0.00 35.15 2.32
389 390 6.369065 ACGACTAAGTCCTTTCATGACAATTC 59.631 38.462 0.00 0.00 35.15 2.17
390 391 6.183360 CGACTAAGTCCTTTCATGACAATTCC 60.183 42.308 0.00 0.00 35.15 3.01
391 392 6.542821 ACTAAGTCCTTTCATGACAATTCCA 58.457 36.000 0.00 0.00 35.15 3.53
392 393 5.712152 AAGTCCTTTCATGACAATTCCAC 57.288 39.130 0.00 0.00 35.15 4.02
393 394 3.753272 AGTCCTTTCATGACAATTCCACG 59.247 43.478 0.00 0.00 35.15 4.94
394 395 3.751175 GTCCTTTCATGACAATTCCACGA 59.249 43.478 0.00 0.00 32.91 4.35
395 396 3.751175 TCCTTTCATGACAATTCCACGAC 59.249 43.478 0.00 0.00 0.00 4.34
396 397 3.501828 CCTTTCATGACAATTCCACGACA 59.498 43.478 0.00 0.00 0.00 4.35
397 398 4.378770 CCTTTCATGACAATTCCACGACAG 60.379 45.833 0.00 0.00 0.00 3.51
398 399 3.676291 TCATGACAATTCCACGACAGA 57.324 42.857 0.00 0.00 0.00 3.41
399 400 4.001618 TCATGACAATTCCACGACAGAA 57.998 40.909 0.00 0.00 0.00 3.02
400 401 4.384940 TCATGACAATTCCACGACAGAAA 58.615 39.130 0.00 0.00 0.00 2.52
401 402 4.452114 TCATGACAATTCCACGACAGAAAG 59.548 41.667 0.00 0.00 0.00 2.62
402 403 3.138304 TGACAATTCCACGACAGAAAGG 58.862 45.455 0.00 0.00 0.00 3.11
403 404 2.484264 GACAATTCCACGACAGAAAGGG 59.516 50.000 0.00 0.00 0.00 3.95
404 405 2.158667 ACAATTCCACGACAGAAAGGGT 60.159 45.455 0.00 0.00 0.00 4.34
405 406 3.071892 ACAATTCCACGACAGAAAGGGTA 59.928 43.478 0.00 0.00 0.00 3.69
406 407 2.825861 TTCCACGACAGAAAGGGTAC 57.174 50.000 0.00 0.00 0.00 3.34
413 414 1.290955 CAGAAAGGGTACGCGTCCA 59.709 57.895 18.63 0.00 0.00 4.02
439 440 4.549458 GCAAAATGCACAGTAACAGATGT 58.451 39.130 0.00 0.00 44.26 3.06
446 447 4.202253 TGCACAGTAACAGATGTCTGAAGT 60.202 41.667 16.41 4.72 46.59 3.01
450 451 4.618912 CAGTAACAGATGTCTGAAGTGTCG 59.381 45.833 16.41 0.00 46.59 4.35
463 464 6.254589 GTCTGAAGTGTCGAATAGGAAATCAG 59.745 42.308 0.00 0.00 33.61 2.90
475 476 8.462016 CGAATAGGAAATCAGACCAATTTTCTT 58.538 33.333 0.00 0.00 34.49 2.52
516 517 4.753516 ATGGTCATTAATCCACGAGTCA 57.246 40.909 0.00 0.00 36.50 3.41
525 526 0.943835 TCCACGAGTCATGTTGCACG 60.944 55.000 0.00 0.00 0.00 5.34
526 527 1.154599 CACGAGTCATGTTGCACGC 60.155 57.895 0.00 0.00 0.00 5.34
664 665 2.332063 AGTTGTGAGCCGGGAATATG 57.668 50.000 2.18 0.00 0.00 1.78
665 666 1.559682 AGTTGTGAGCCGGGAATATGT 59.440 47.619 2.18 0.00 0.00 2.29
666 667 2.769663 AGTTGTGAGCCGGGAATATGTA 59.230 45.455 2.18 0.00 0.00 2.29
667 668 2.870411 GTTGTGAGCCGGGAATATGTAC 59.130 50.000 2.18 0.00 0.00 2.90
668 669 2.112190 TGTGAGCCGGGAATATGTACA 58.888 47.619 2.18 0.00 0.00 2.90
669 670 2.102420 TGTGAGCCGGGAATATGTACAG 59.898 50.000 2.18 0.00 0.00 2.74
680 681 7.765360 CCGGGAATATGTACAGTAGTAAAAACA 59.235 37.037 0.33 0.00 30.67 2.83
702 703 5.891551 ACATTCTTGGATTTAATTACGCCCT 59.108 36.000 0.00 0.00 0.00 5.19
716 718 0.171903 CGCCCTGAGCCAGAAATTTG 59.828 55.000 0.00 0.00 38.78 2.32
735 737 7.507733 AATTTGCCTTCAGTAGATCATCATC 57.492 36.000 0.00 0.00 0.00 2.92
736 738 5.619132 TTGCCTTCAGTAGATCATCATCA 57.381 39.130 0.00 0.00 0.00 3.07
747 768 8.574737 CAGTAGATCATCATCACAGATAGACAA 58.425 37.037 0.00 0.00 0.00 3.18
771 792 2.989824 ACAGACTGGCCTACGCGT 60.990 61.111 19.17 19.17 35.02 6.01
830 852 2.436646 AGTGCGCGCCTGCTATTT 60.437 55.556 30.77 1.57 39.65 1.40
832 854 3.202001 TGCGCGCCTGCTATTTCC 61.202 61.111 30.77 0.00 39.65 3.13
833 855 3.202001 GCGCGCCTGCTATTTCCA 61.202 61.111 23.24 0.00 39.65 3.53
834 856 2.546494 GCGCGCCTGCTATTTCCAT 61.546 57.895 23.24 0.00 39.65 3.41
842 864 2.228059 CTGCTATTTCCATGCTCCTGG 58.772 52.381 0.00 0.00 37.66 4.45
896 918 5.857134 TCCCCCTCTACCTCTTTAAATACA 58.143 41.667 0.00 0.00 0.00 2.29
897 919 5.903589 TCCCCCTCTACCTCTTTAAATACAG 59.096 44.000 0.00 0.00 0.00 2.74
898 920 5.666265 CCCCCTCTACCTCTTTAAATACAGT 59.334 44.000 0.00 0.00 0.00 3.55
899 921 6.842807 CCCCCTCTACCTCTTTAAATACAGTA 59.157 42.308 0.00 0.00 0.00 2.74
900 922 7.201983 CCCCCTCTACCTCTTTAAATACAGTAC 60.202 44.444 0.00 0.00 0.00 2.73
918 940 1.825191 CCATCCATTCCGCCCACAG 60.825 63.158 0.00 0.00 0.00 3.66
923 945 2.933287 ATTCCGCCCACAGTCCCA 60.933 61.111 0.00 0.00 0.00 4.37
929 951 1.375523 GCCCACAGTCCCAACTACG 60.376 63.158 0.00 0.00 33.25 3.51
979 1002 4.824537 TCATCAATCCGTTCCAAAACAAGA 59.175 37.500 0.00 0.00 34.93 3.02
990 1013 2.223377 CCAAAACAAGAGTAGCCGTCAC 59.777 50.000 0.00 0.00 0.00 3.67
991 1014 2.165319 AAACAAGAGTAGCCGTCACC 57.835 50.000 0.00 0.00 0.00 4.02
992 1015 0.038526 AACAAGAGTAGCCGTCACCG 60.039 55.000 0.00 0.00 0.00 4.94
1156 1179 3.993234 GCGCGCAGGATCGATGTG 61.993 66.667 29.10 0.66 0.00 3.21
1160 1183 0.302890 GCGCAGGATCGATGTGAAAG 59.697 55.000 0.54 0.00 0.00 2.62
1207 1234 6.643388 TCTCCATCGATTTCTGATCTTTTCA 58.357 36.000 0.00 0.00 0.00 2.69
1214 1241 5.790495 CGATTTCTGATCTTTTCAAACCGAC 59.210 40.000 0.00 0.00 32.78 4.79
1224 1251 1.820481 CAAACCGACCCCGTTGTGT 60.820 57.895 0.00 0.00 0.00 3.72
1225 1252 1.820481 AAACCGACCCCGTTGTGTG 60.820 57.895 0.00 0.00 0.00 3.82
1226 1253 2.540028 AAACCGACCCCGTTGTGTGT 62.540 55.000 0.00 0.00 0.00 3.72
1227 1254 2.203098 CCGACCCCGTTGTGTGTT 60.203 61.111 0.00 0.00 0.00 3.32
1228 1255 1.820481 CCGACCCCGTTGTGTGTTT 60.820 57.895 0.00 0.00 0.00 2.83
1229 1256 1.644913 CGACCCCGTTGTGTGTTTC 59.355 57.895 0.00 0.00 0.00 2.78
1230 1257 0.812412 CGACCCCGTTGTGTGTTTCT 60.812 55.000 0.00 0.00 0.00 2.52
1231 1258 1.385528 GACCCCGTTGTGTGTTTCTT 58.614 50.000 0.00 0.00 0.00 2.52
1232 1259 1.332686 GACCCCGTTGTGTGTTTCTTC 59.667 52.381 0.00 0.00 0.00 2.87
1286 1313 0.524392 GACCACGAGTGCGAGATGAG 60.524 60.000 0.00 0.00 41.64 2.90
1448 1492 6.409234 CGATCTCTATCCTATAGCTTCCTCCT 60.409 46.154 0.00 0.00 0.00 3.69
1474 1518 2.186125 GGATCGACCCCACCGTTC 59.814 66.667 0.00 0.00 0.00 3.95
1475 1519 2.652095 GGATCGACCCCACCGTTCA 61.652 63.158 0.00 0.00 0.00 3.18
1476 1520 1.520666 GATCGACCCCACCGTTCAT 59.479 57.895 0.00 0.00 0.00 2.57
1477 1521 0.810031 GATCGACCCCACCGTTCATG 60.810 60.000 0.00 0.00 0.00 3.07
1478 1522 2.869503 ATCGACCCCACCGTTCATGC 62.870 60.000 0.00 0.00 0.00 4.06
1479 1523 2.033448 GACCCCACCGTTCATGCA 59.967 61.111 0.00 0.00 0.00 3.96
1480 1524 1.602323 GACCCCACCGTTCATGCAA 60.602 57.895 0.00 0.00 0.00 4.08
1646 1724 2.694760 GGCTGGCTTTCTTCTGGCG 61.695 63.158 0.00 0.00 0.00 5.69
1674 1752 1.886542 GGAGCCGAACTTGACCAAAAT 59.113 47.619 0.00 0.00 0.00 1.82
1677 1755 3.157087 AGCCGAACTTGACCAAAATCAT 58.843 40.909 0.00 0.00 0.00 2.45
1855 1933 1.239968 ACACTCTCGTACGTGGACCC 61.240 60.000 16.05 0.00 35.51 4.46
1926 2004 5.158101 CTGGTAGTCAGTCAGTATACGTG 57.842 47.826 0.00 0.00 38.64 4.49
1999 2077 0.107945 GCCAGCGAAGACTTCCTGAT 60.108 55.000 24.09 5.45 32.90 2.90
2345 3618 7.112779 CACATCTAAATCCTACTCCCTTTGTT 58.887 38.462 0.00 0.00 0.00 2.83
2360 3633 6.469410 TCCCTTTGTTCACGAATAAGTGTAT 58.531 36.000 0.00 0.00 42.40 2.29
2375 3648 8.507524 AATAAGTGTATTCCTAGCTTTTGTCC 57.492 34.615 0.00 0.00 0.00 4.02
2376 3649 5.763876 AGTGTATTCCTAGCTTTTGTCCT 57.236 39.130 0.00 0.00 0.00 3.85
2377 3650 6.869206 AGTGTATTCCTAGCTTTTGTCCTA 57.131 37.500 0.00 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.587547 GATCTTAAAGCGCCTCTGGG 58.412 55.000 2.29 0.00 0.00 4.45
9 10 1.587547 GGATCTTAAAGCGCCTCTGG 58.412 55.000 2.29 0.00 0.00 3.86
10 11 1.212616 CGGATCTTAAAGCGCCTCTG 58.787 55.000 2.29 0.00 0.00 3.35
11 12 0.824759 ACGGATCTTAAAGCGCCTCT 59.175 50.000 2.29 0.00 0.00 3.69
12 13 2.503920 TACGGATCTTAAAGCGCCTC 57.496 50.000 2.29 0.00 0.00 4.70
13 14 2.429610 TCTTACGGATCTTAAAGCGCCT 59.570 45.455 2.29 0.00 0.00 5.52
14 15 2.795470 CTCTTACGGATCTTAAAGCGCC 59.205 50.000 2.29 0.00 0.00 6.53
15 16 3.703420 TCTCTTACGGATCTTAAAGCGC 58.297 45.455 0.00 0.00 0.00 5.92
16 17 7.096147 GGTTTATCTCTTACGGATCTTAAAGCG 60.096 40.741 0.00 0.00 0.00 4.68
17 18 7.709613 TGGTTTATCTCTTACGGATCTTAAAGC 59.290 37.037 0.00 0.00 0.00 3.51
18 19 9.765795 ATGGTTTATCTCTTACGGATCTTAAAG 57.234 33.333 0.00 0.00 0.00 1.85
19 20 9.760077 GATGGTTTATCTCTTACGGATCTTAAA 57.240 33.333 0.00 0.00 32.83 1.52
20 21 8.920174 TGATGGTTTATCTCTTACGGATCTTAA 58.080 33.333 0.00 0.00 36.71 1.85
21 22 8.473358 TGATGGTTTATCTCTTACGGATCTTA 57.527 34.615 0.00 0.00 36.71 2.10
22 23 7.361457 TGATGGTTTATCTCTTACGGATCTT 57.639 36.000 0.00 0.00 36.71 2.40
23 24 6.978674 TGATGGTTTATCTCTTACGGATCT 57.021 37.500 0.00 0.00 36.71 2.75
24 25 9.307121 CATATGATGGTTTATCTCTTACGGATC 57.693 37.037 0.00 0.00 36.71 3.36
25 26 8.816894 ACATATGATGGTTTATCTCTTACGGAT 58.183 33.333 10.38 0.00 36.71 4.18
26 27 8.190326 ACATATGATGGTTTATCTCTTACGGA 57.810 34.615 10.38 0.00 36.71 4.69
27 28 9.355215 GTACATATGATGGTTTATCTCTTACGG 57.645 37.037 10.38 0.00 36.71 4.02
28 29 9.908152 TGTACATATGATGGTTTATCTCTTACG 57.092 33.333 10.38 0.00 36.71 3.18
32 33 9.935241 GTCATGTACATATGATGGTTTATCTCT 57.065 33.333 10.38 0.00 39.13 3.10
33 34 9.935241 AGTCATGTACATATGATGGTTTATCTC 57.065 33.333 10.38 0.00 39.13 2.75
36 37 9.851686 ACAAGTCATGTACATATGATGGTTTAT 57.148 29.630 10.38 0.00 41.63 1.40
38 39 9.851686 ATACAAGTCATGTACATATGATGGTTT 57.148 29.630 10.38 0.00 46.90 3.27
39 40 9.851686 AATACAAGTCATGTACATATGATGGTT 57.148 29.630 10.38 3.76 46.90 3.67
40 41 9.276590 CAATACAAGTCATGTACATATGATGGT 57.723 33.333 10.38 6.89 46.90 3.55
41 42 9.276590 ACAATACAAGTCATGTACATATGATGG 57.723 33.333 10.38 1.47 46.90 3.51
46 47 9.273016 GCCTTACAATACAAGTCATGTACATAT 57.727 33.333 8.32 0.00 46.90 1.78
47 48 8.261522 TGCCTTACAATACAAGTCATGTACATA 58.738 33.333 8.32 0.00 46.90 2.29
48 49 7.109501 TGCCTTACAATACAAGTCATGTACAT 58.890 34.615 1.41 1.41 46.90 2.29
49 50 6.468543 TGCCTTACAATACAAGTCATGTACA 58.531 36.000 0.00 0.00 46.90 2.90
50 51 6.978343 TGCCTTACAATACAAGTCATGTAC 57.022 37.500 0.00 0.00 46.90 2.90
52 53 6.237901 TCTTGCCTTACAATACAAGTCATGT 58.762 36.000 0.00 0.00 40.29 3.21
53 54 6.741992 TCTTGCCTTACAATACAAGTCATG 57.258 37.500 0.00 0.00 40.29 3.07
54 55 7.944729 ATTCTTGCCTTACAATACAAGTCAT 57.055 32.000 0.00 0.00 40.29 3.06
55 56 8.100791 ACTATTCTTGCCTTACAATACAAGTCA 58.899 33.333 0.00 0.00 40.29 3.41
56 57 8.494016 ACTATTCTTGCCTTACAATACAAGTC 57.506 34.615 0.00 0.00 40.29 3.01
57 58 8.863872 AACTATTCTTGCCTTACAATACAAGT 57.136 30.769 0.00 0.00 40.29 3.16
60 61 9.817809 CTCTAACTATTCTTGCCTTACAATACA 57.182 33.333 0.00 0.00 37.72 2.29
63 64 7.988028 GGTCTCTAACTATTCTTGCCTTACAAT 59.012 37.037 0.00 0.00 37.72 2.71
64 65 7.328737 GGTCTCTAACTATTCTTGCCTTACAA 58.671 38.462 0.00 0.00 36.62 2.41
65 66 6.405508 CGGTCTCTAACTATTCTTGCCTTACA 60.406 42.308 0.00 0.00 0.00 2.41
66 67 5.978322 CGGTCTCTAACTATTCTTGCCTTAC 59.022 44.000 0.00 0.00 0.00 2.34
67 68 5.889853 TCGGTCTCTAACTATTCTTGCCTTA 59.110 40.000 0.00 0.00 0.00 2.69
68 69 4.710375 TCGGTCTCTAACTATTCTTGCCTT 59.290 41.667 0.00 0.00 0.00 4.35
69 70 4.279145 TCGGTCTCTAACTATTCTTGCCT 58.721 43.478 0.00 0.00 0.00 4.75
70 71 4.612943 CTCGGTCTCTAACTATTCTTGCC 58.387 47.826 0.00 0.00 0.00 4.52
71 72 4.045783 GCTCGGTCTCTAACTATTCTTGC 58.954 47.826 0.00 0.00 0.00 4.01
72 73 4.612943 GGCTCGGTCTCTAACTATTCTTG 58.387 47.826 0.00 0.00 0.00 3.02
73 74 3.315749 CGGCTCGGTCTCTAACTATTCTT 59.684 47.826 0.00 0.00 0.00 2.52
74 75 2.879646 CGGCTCGGTCTCTAACTATTCT 59.120 50.000 0.00 0.00 0.00 2.40
75 76 2.030981 CCGGCTCGGTCTCTAACTATTC 60.031 54.545 5.56 0.00 42.73 1.75
76 77 1.955080 CCGGCTCGGTCTCTAACTATT 59.045 52.381 5.56 0.00 42.73 1.73
77 78 1.606903 CCGGCTCGGTCTCTAACTAT 58.393 55.000 5.56 0.00 42.73 2.12
78 79 3.091318 CCGGCTCGGTCTCTAACTA 57.909 57.895 5.56 0.00 42.73 2.24
79 80 3.921521 CCGGCTCGGTCTCTAACT 58.078 61.111 5.56 0.00 42.73 2.24
89 90 0.999406 CATAAACAGTGTCCGGCTCG 59.001 55.000 0.00 0.00 0.00 5.03
90 91 1.369625 CCATAAACAGTGTCCGGCTC 58.630 55.000 0.00 0.00 0.00 4.70
91 92 0.035439 CCCATAAACAGTGTCCGGCT 60.035 55.000 0.00 0.00 0.00 5.52
92 93 1.654023 GCCCATAAACAGTGTCCGGC 61.654 60.000 0.00 0.00 0.00 6.13
93 94 1.029947 GGCCCATAAACAGTGTCCGG 61.030 60.000 0.00 0.00 0.00 5.14
94 95 1.366111 CGGCCCATAAACAGTGTCCG 61.366 60.000 0.00 0.00 0.00 4.79
95 96 0.035820 TCGGCCCATAAACAGTGTCC 60.036 55.000 0.00 0.00 0.00 4.02
96 97 1.940613 GATCGGCCCATAAACAGTGTC 59.059 52.381 0.00 0.00 0.00 3.67
97 98 1.742411 CGATCGGCCCATAAACAGTGT 60.742 52.381 7.38 0.00 0.00 3.55
98 99 0.937304 CGATCGGCCCATAAACAGTG 59.063 55.000 7.38 0.00 0.00 3.66
99 100 0.179056 CCGATCGGCCCATAAACAGT 60.179 55.000 23.37 0.00 0.00 3.55
100 101 0.884704 CCCGATCGGCCCATAAACAG 60.885 60.000 29.12 6.98 0.00 3.16
101 102 1.147376 CCCGATCGGCCCATAAACA 59.853 57.895 29.12 0.00 0.00 2.83
102 103 0.883370 GTCCCGATCGGCCCATAAAC 60.883 60.000 29.12 12.44 0.00 2.01
103 104 1.052124 AGTCCCGATCGGCCCATAAA 61.052 55.000 29.12 4.29 0.00 1.40
104 105 1.458777 AGTCCCGATCGGCCCATAA 60.459 57.895 29.12 6.08 0.00 1.90
105 106 1.906824 GAGTCCCGATCGGCCCATA 60.907 63.158 29.12 7.89 0.00 2.74
106 107 2.367586 TAGAGTCCCGATCGGCCCAT 62.368 60.000 29.12 13.57 0.00 4.00
107 108 2.367586 ATAGAGTCCCGATCGGCCCA 62.368 60.000 29.12 11.58 0.00 5.36
108 109 1.606889 ATAGAGTCCCGATCGGCCC 60.607 63.158 29.12 19.64 0.00 5.80
109 110 0.894184 TCATAGAGTCCCGATCGGCC 60.894 60.000 29.12 20.01 0.00 6.13
110 111 0.523966 CTCATAGAGTCCCGATCGGC 59.476 60.000 29.12 16.06 0.00 5.54
111 112 0.523966 GCTCATAGAGTCCCGATCGG 59.476 60.000 27.65 27.65 31.39 4.18
112 113 0.523966 GGCTCATAGAGTCCCGATCG 59.476 60.000 8.51 8.51 31.39 3.69
113 114 0.523966 CGGCTCATAGAGTCCCGATC 59.476 60.000 7.12 0.00 37.45 3.69
114 115 0.178987 ACGGCTCATAGAGTCCCGAT 60.179 55.000 16.36 2.80 37.45 4.18
115 116 0.395311 AACGGCTCATAGAGTCCCGA 60.395 55.000 16.36 0.00 37.45 5.14
116 117 0.249073 CAACGGCTCATAGAGTCCCG 60.249 60.000 10.26 10.26 39.80 5.14
117 118 0.105039 CCAACGGCTCATAGAGTCCC 59.895 60.000 0.00 0.00 29.32 4.46
118 119 1.112113 TCCAACGGCTCATAGAGTCC 58.888 55.000 0.00 0.00 29.32 3.85
119 120 1.534175 CGTCCAACGGCTCATAGAGTC 60.534 57.143 0.00 0.00 38.08 3.36
120 121 0.456221 CGTCCAACGGCTCATAGAGT 59.544 55.000 0.00 0.00 38.08 3.24
121 122 3.258225 CGTCCAACGGCTCATAGAG 57.742 57.895 0.00 0.00 38.08 2.43
132 133 0.877071 TACAGAGGTCGACGTCCAAC 59.123 55.000 29.18 10.14 0.00 3.77
133 134 1.830279 ATACAGAGGTCGACGTCCAA 58.170 50.000 29.18 17.77 0.00 3.53
134 135 2.696989 TATACAGAGGTCGACGTCCA 57.303 50.000 29.18 17.80 0.00 4.02
135 136 5.334724 CCTTTATATACAGAGGTCGACGTCC 60.335 48.000 29.18 14.92 0.00 4.79
136 137 5.334724 CCCTTTATATACAGAGGTCGACGTC 60.335 48.000 26.58 26.58 0.00 4.34
137 138 4.518211 CCCTTTATATACAGAGGTCGACGT 59.482 45.833 11.12 11.12 0.00 4.34
138 139 4.758674 TCCCTTTATATACAGAGGTCGACG 59.241 45.833 9.92 0.00 0.00 5.12
139 140 5.334724 CGTCCCTTTATATACAGAGGTCGAC 60.335 48.000 7.13 7.13 31.36 4.20
140 141 4.758674 CGTCCCTTTATATACAGAGGTCGA 59.241 45.833 12.88 0.00 31.36 4.20
141 142 4.758674 TCGTCCCTTTATATACAGAGGTCG 59.241 45.833 12.39 12.39 0.00 4.79
142 143 5.048154 GGTCGTCCCTTTATATACAGAGGTC 60.048 48.000 0.00 0.00 0.00 3.85
143 144 4.831710 GGTCGTCCCTTTATATACAGAGGT 59.168 45.833 0.00 0.00 0.00 3.85
144 145 5.388408 GGTCGTCCCTTTATATACAGAGG 57.612 47.826 0.00 0.00 0.00 3.69
169 170 3.741476 CTTGCCCTGAACTGCGGC 61.741 66.667 0.00 0.00 43.32 6.53
170 171 0.605319 TTACTTGCCCTGAACTGCGG 60.605 55.000 0.00 0.00 0.00 5.69
171 172 0.517316 GTTACTTGCCCTGAACTGCG 59.483 55.000 0.00 0.00 0.00 5.18
172 173 1.604604 TGTTACTTGCCCTGAACTGC 58.395 50.000 0.00 0.00 0.00 4.40
173 174 3.411446 TGATGTTACTTGCCCTGAACTG 58.589 45.455 0.00 0.00 0.00 3.16
174 175 3.327757 TCTGATGTTACTTGCCCTGAACT 59.672 43.478 0.00 0.00 0.00 3.01
175 176 3.674997 TCTGATGTTACTTGCCCTGAAC 58.325 45.455 0.00 0.00 0.00 3.18
176 177 4.517285 GATCTGATGTTACTTGCCCTGAA 58.483 43.478 0.00 0.00 0.00 3.02
177 178 3.430790 CGATCTGATGTTACTTGCCCTGA 60.431 47.826 0.00 0.00 0.00 3.86
178 179 2.868583 CGATCTGATGTTACTTGCCCTG 59.131 50.000 0.00 0.00 0.00 4.45
179 180 2.766263 TCGATCTGATGTTACTTGCCCT 59.234 45.455 0.00 0.00 0.00 5.19
180 181 3.126831 CTCGATCTGATGTTACTTGCCC 58.873 50.000 0.00 0.00 0.00 5.36
181 182 4.046938 TCTCGATCTGATGTTACTTGCC 57.953 45.455 0.00 0.00 0.00 4.52
182 183 3.489047 GCTCTCGATCTGATGTTACTTGC 59.511 47.826 0.00 0.00 0.00 4.01
183 184 4.930963 AGCTCTCGATCTGATGTTACTTG 58.069 43.478 0.00 0.00 0.00 3.16
184 185 5.240623 CCTAGCTCTCGATCTGATGTTACTT 59.759 44.000 0.00 0.00 0.00 2.24
185 186 4.759693 CCTAGCTCTCGATCTGATGTTACT 59.240 45.833 0.00 0.00 0.00 2.24
186 187 4.517453 ACCTAGCTCTCGATCTGATGTTAC 59.483 45.833 0.00 0.00 0.00 2.50
187 188 4.720046 ACCTAGCTCTCGATCTGATGTTA 58.280 43.478 0.00 0.00 0.00 2.41
188 189 3.561143 ACCTAGCTCTCGATCTGATGTT 58.439 45.455 0.00 0.00 0.00 2.71
189 190 3.146066 GACCTAGCTCTCGATCTGATGT 58.854 50.000 0.00 0.00 0.00 3.06
190 191 3.145286 TGACCTAGCTCTCGATCTGATG 58.855 50.000 0.00 0.00 0.00 3.07
191 192 3.500448 TGACCTAGCTCTCGATCTGAT 57.500 47.619 0.00 0.00 0.00 2.90
192 193 3.210227 CTTGACCTAGCTCTCGATCTGA 58.790 50.000 0.00 0.00 0.00 3.27
193 194 2.948979 ACTTGACCTAGCTCTCGATCTG 59.051 50.000 0.00 0.00 0.00 2.90
194 195 2.948979 CACTTGACCTAGCTCTCGATCT 59.051 50.000 0.00 0.00 0.00 2.75
195 196 2.946329 TCACTTGACCTAGCTCTCGATC 59.054 50.000 0.00 0.00 0.00 3.69
196 197 3.006112 TCACTTGACCTAGCTCTCGAT 57.994 47.619 0.00 0.00 0.00 3.59
197 198 2.491675 TCACTTGACCTAGCTCTCGA 57.508 50.000 0.00 0.00 0.00 4.04
198 199 3.791973 AATCACTTGACCTAGCTCTCG 57.208 47.619 0.00 0.00 0.00 4.04
199 200 4.867608 GTGAAATCACTTGACCTAGCTCTC 59.132 45.833 6.30 0.00 43.25 3.20
200 201 4.826556 GTGAAATCACTTGACCTAGCTCT 58.173 43.478 6.30 0.00 43.25 4.09
213 214 3.871594 CGATTACCAGGGAGTGAAATCAC 59.128 47.826 5.40 5.40 46.77 3.06
214 215 3.772572 TCGATTACCAGGGAGTGAAATCA 59.227 43.478 0.00 0.00 32.15 2.57
215 216 4.099573 TCTCGATTACCAGGGAGTGAAATC 59.900 45.833 0.00 0.00 0.00 2.17
216 217 4.030913 TCTCGATTACCAGGGAGTGAAAT 58.969 43.478 0.00 0.00 0.00 2.17
217 218 3.194968 GTCTCGATTACCAGGGAGTGAAA 59.805 47.826 0.00 0.00 0.00 2.69
218 219 2.758979 GTCTCGATTACCAGGGAGTGAA 59.241 50.000 0.00 0.00 0.00 3.18
219 220 2.291346 TGTCTCGATTACCAGGGAGTGA 60.291 50.000 0.00 0.00 0.00 3.41
220 221 2.100197 TGTCTCGATTACCAGGGAGTG 58.900 52.381 0.00 0.00 0.00 3.51
221 222 2.526888 TGTCTCGATTACCAGGGAGT 57.473 50.000 0.00 0.00 0.00 3.85
222 223 4.559704 GCTTATGTCTCGATTACCAGGGAG 60.560 50.000 0.00 0.00 0.00 4.30
223 224 3.321111 GCTTATGTCTCGATTACCAGGGA 59.679 47.826 0.00 0.00 0.00 4.20
224 225 3.069586 TGCTTATGTCTCGATTACCAGGG 59.930 47.826 0.00 0.00 0.00 4.45
225 226 4.322080 TGCTTATGTCTCGATTACCAGG 57.678 45.455 0.00 0.00 0.00 4.45
226 227 6.219473 AGATTGCTTATGTCTCGATTACCAG 58.781 40.000 0.00 0.00 0.00 4.00
227 228 6.161855 AGATTGCTTATGTCTCGATTACCA 57.838 37.500 0.00 0.00 0.00 3.25
228 229 6.144724 GTGAGATTGCTTATGTCTCGATTACC 59.855 42.308 0.00 0.00 40.92 2.85
229 230 6.920758 AGTGAGATTGCTTATGTCTCGATTAC 59.079 38.462 0.00 0.00 40.92 1.89
230 231 7.043961 AGTGAGATTGCTTATGTCTCGATTA 57.956 36.000 0.00 0.00 40.92 1.75
231 232 5.911752 AGTGAGATTGCTTATGTCTCGATT 58.088 37.500 0.00 0.00 40.92 3.34
232 233 5.068329 TGAGTGAGATTGCTTATGTCTCGAT 59.932 40.000 0.00 0.00 40.92 3.59
233 234 4.399303 TGAGTGAGATTGCTTATGTCTCGA 59.601 41.667 0.00 0.00 40.92 4.04
234 235 4.676546 TGAGTGAGATTGCTTATGTCTCG 58.323 43.478 0.00 0.00 40.92 4.04
235 236 6.974932 TTTGAGTGAGATTGCTTATGTCTC 57.025 37.500 0.00 0.00 39.02 3.36
236 237 6.939163 AGTTTTGAGTGAGATTGCTTATGTCT 59.061 34.615 0.00 0.00 0.00 3.41
237 238 7.020010 CAGTTTTGAGTGAGATTGCTTATGTC 58.980 38.462 0.00 0.00 0.00 3.06
238 239 6.072286 CCAGTTTTGAGTGAGATTGCTTATGT 60.072 38.462 0.00 0.00 0.00 2.29
239 240 6.149973 TCCAGTTTTGAGTGAGATTGCTTATG 59.850 38.462 0.00 0.00 0.00 1.90
240 241 6.240894 TCCAGTTTTGAGTGAGATTGCTTAT 58.759 36.000 0.00 0.00 0.00 1.73
241 242 5.620206 TCCAGTTTTGAGTGAGATTGCTTA 58.380 37.500 0.00 0.00 0.00 3.09
242 243 4.464008 TCCAGTTTTGAGTGAGATTGCTT 58.536 39.130 0.00 0.00 0.00 3.91
243 244 4.090761 TCCAGTTTTGAGTGAGATTGCT 57.909 40.909 0.00 0.00 0.00 3.91
244 245 4.436584 CGATCCAGTTTTGAGTGAGATTGC 60.437 45.833 0.00 0.00 0.00 3.56
245 246 4.692625 ACGATCCAGTTTTGAGTGAGATTG 59.307 41.667 0.00 0.00 0.00 2.67
246 247 4.899502 ACGATCCAGTTTTGAGTGAGATT 58.100 39.130 0.00 0.00 0.00 2.40
247 248 4.543590 ACGATCCAGTTTTGAGTGAGAT 57.456 40.909 0.00 0.00 0.00 2.75
248 249 5.410924 CATACGATCCAGTTTTGAGTGAGA 58.589 41.667 0.00 0.00 0.00 3.27
249 250 4.033358 GCATACGATCCAGTTTTGAGTGAG 59.967 45.833 0.00 0.00 0.00 3.51
250 251 3.932710 GCATACGATCCAGTTTTGAGTGA 59.067 43.478 0.00 0.00 0.00 3.41
251 252 3.935203 AGCATACGATCCAGTTTTGAGTG 59.065 43.478 0.00 0.00 0.00 3.51
252 253 4.081420 AGAGCATACGATCCAGTTTTGAGT 60.081 41.667 0.00 0.00 0.00 3.41
253 254 4.437239 AGAGCATACGATCCAGTTTTGAG 58.563 43.478 0.00 0.00 0.00 3.02
254 255 4.471904 AGAGCATACGATCCAGTTTTGA 57.528 40.909 0.00 0.00 0.00 2.69
255 256 5.006746 GGTAAGAGCATACGATCCAGTTTTG 59.993 44.000 0.00 0.00 0.00 2.44
256 257 5.104900 AGGTAAGAGCATACGATCCAGTTTT 60.105 40.000 0.00 0.00 0.00 2.43
257 258 4.406003 AGGTAAGAGCATACGATCCAGTTT 59.594 41.667 0.00 0.00 0.00 2.66
258 259 3.961408 AGGTAAGAGCATACGATCCAGTT 59.039 43.478 0.00 0.00 0.00 3.16
259 260 3.567397 AGGTAAGAGCATACGATCCAGT 58.433 45.455 0.00 0.00 0.00 4.00
260 261 4.038042 TGAAGGTAAGAGCATACGATCCAG 59.962 45.833 0.00 0.00 0.00 3.86
261 262 3.958147 TGAAGGTAAGAGCATACGATCCA 59.042 43.478 0.00 0.00 0.00 3.41
262 263 4.299978 GTGAAGGTAAGAGCATACGATCC 58.700 47.826 0.00 0.00 0.00 3.36
263 264 4.202121 TGGTGAAGGTAAGAGCATACGATC 60.202 45.833 0.00 0.00 0.00 3.69
264 265 3.704566 TGGTGAAGGTAAGAGCATACGAT 59.295 43.478 0.00 0.00 0.00 3.73
265 266 3.093814 TGGTGAAGGTAAGAGCATACGA 58.906 45.455 0.00 0.00 0.00 3.43
266 267 3.520290 TGGTGAAGGTAAGAGCATACG 57.480 47.619 0.00 0.00 0.00 3.06
267 268 5.992217 CCTTATGGTGAAGGTAAGAGCATAC 59.008 44.000 0.00 0.00 41.09 2.39
268 269 5.071788 CCCTTATGGTGAAGGTAAGAGCATA 59.928 44.000 1.74 0.00 44.02 3.14
269 270 4.141390 CCCTTATGGTGAAGGTAAGAGCAT 60.141 45.833 1.74 0.00 44.02 3.79
270 271 3.199946 CCCTTATGGTGAAGGTAAGAGCA 59.800 47.826 1.74 0.00 44.02 4.26
271 272 3.433740 CCCCTTATGGTGAAGGTAAGAGC 60.434 52.174 1.74 0.00 44.02 4.09
272 273 3.433740 GCCCCTTATGGTGAAGGTAAGAG 60.434 52.174 1.74 0.00 44.02 2.85
273 274 2.508300 GCCCCTTATGGTGAAGGTAAGA 59.492 50.000 1.74 0.00 44.02 2.10
274 275 2.422945 GGCCCCTTATGGTGAAGGTAAG 60.423 54.545 0.00 0.00 44.02 2.34
275 276 1.567175 GGCCCCTTATGGTGAAGGTAA 59.433 52.381 0.00 0.00 44.02 2.85
276 277 1.218844 GGCCCCTTATGGTGAAGGTA 58.781 55.000 0.00 0.00 44.02 3.08
277 278 1.921869 CGGCCCCTTATGGTGAAGGT 61.922 60.000 0.00 0.00 44.02 3.50
278 279 1.152963 CGGCCCCTTATGGTGAAGG 60.153 63.158 0.00 0.00 44.96 3.46
279 280 0.474184 ATCGGCCCCTTATGGTGAAG 59.526 55.000 0.00 0.00 0.00 3.02
280 281 0.472471 GATCGGCCCCTTATGGTGAA 59.528 55.000 0.00 0.00 0.00 3.18
281 282 1.415672 GGATCGGCCCCTTATGGTGA 61.416 60.000 0.00 0.00 0.00 4.02
282 283 1.073199 GGATCGGCCCCTTATGGTG 59.927 63.158 0.00 0.00 0.00 4.17
283 284 1.385347 TGGATCGGCCCCTTATGGT 60.385 57.895 0.00 0.00 34.97 3.55
284 285 1.376466 CTGGATCGGCCCCTTATGG 59.624 63.158 0.00 0.00 34.97 2.74
285 286 1.348064 TACTGGATCGGCCCCTTATG 58.652 55.000 0.00 0.00 34.97 1.90
286 287 2.344093 ATACTGGATCGGCCCCTTAT 57.656 50.000 0.00 0.00 34.97 1.73
287 288 3.263369 TTATACTGGATCGGCCCCTTA 57.737 47.619 0.00 0.00 34.97 2.69
288 289 2.105993 GTTTATACTGGATCGGCCCCTT 59.894 50.000 0.00 0.00 34.97 3.95
289 290 1.697982 GTTTATACTGGATCGGCCCCT 59.302 52.381 0.00 0.00 34.97 4.79
290 291 1.271217 GGTTTATACTGGATCGGCCCC 60.271 57.143 0.00 0.00 34.97 5.80
291 292 1.271217 GGGTTTATACTGGATCGGCCC 60.271 57.143 0.00 0.00 34.97 5.80
292 293 1.271217 GGGGTTTATACTGGATCGGCC 60.271 57.143 0.00 0.00 37.10 6.13
293 294 1.607251 CGGGGTTTATACTGGATCGGC 60.607 57.143 0.00 0.00 0.00 5.54
294 295 1.690352 ACGGGGTTTATACTGGATCGG 59.310 52.381 0.00 0.00 0.00 4.18
295 296 2.101917 ACACGGGGTTTATACTGGATCG 59.898 50.000 0.00 0.00 0.00 3.69
296 297 3.493873 GGACACGGGGTTTATACTGGATC 60.494 52.174 0.00 0.00 0.00 3.36
297 298 2.436911 GGACACGGGGTTTATACTGGAT 59.563 50.000 0.00 0.00 0.00 3.41
298 299 1.832998 GGACACGGGGTTTATACTGGA 59.167 52.381 0.00 0.00 0.00 3.86
299 300 1.835531 AGGACACGGGGTTTATACTGG 59.164 52.381 0.00 0.00 0.00 4.00
300 301 3.622166 AAGGACACGGGGTTTATACTG 57.378 47.619 0.00 0.00 0.00 2.74
301 302 5.163269 GGATAAAGGACACGGGGTTTATACT 60.163 44.000 0.00 0.00 0.00 2.12
302 303 5.059161 GGATAAAGGACACGGGGTTTATAC 58.941 45.833 0.00 0.00 0.00 1.47
303 304 4.970640 AGGATAAAGGACACGGGGTTTATA 59.029 41.667 0.00 0.00 0.00 0.98
304 305 3.784202 AGGATAAAGGACACGGGGTTTAT 59.216 43.478 0.00 0.00 0.00 1.40
305 306 3.054948 CAGGATAAAGGACACGGGGTTTA 60.055 47.826 0.00 0.00 0.00 2.01
306 307 1.990327 AGGATAAAGGACACGGGGTTT 59.010 47.619 0.00 0.00 0.00 3.27
307 308 1.280998 CAGGATAAAGGACACGGGGTT 59.719 52.381 0.00 0.00 0.00 4.11
308 309 0.909623 CAGGATAAAGGACACGGGGT 59.090 55.000 0.00 0.00 0.00 4.95
309 310 1.200519 TCAGGATAAAGGACACGGGG 58.799 55.000 0.00 0.00 0.00 5.73
310 311 3.560636 AATCAGGATAAAGGACACGGG 57.439 47.619 0.00 0.00 0.00 5.28
311 312 5.671493 AGTTAATCAGGATAAAGGACACGG 58.329 41.667 0.00 0.00 0.00 4.94
312 313 5.753921 GGAGTTAATCAGGATAAAGGACACG 59.246 44.000 0.00 0.00 0.00 4.49
313 314 6.890293 AGGAGTTAATCAGGATAAAGGACAC 58.110 40.000 0.00 0.00 0.00 3.67
314 315 7.510675 AAGGAGTTAATCAGGATAAAGGACA 57.489 36.000 0.00 0.00 0.00 4.02
315 316 9.901172 TTAAAGGAGTTAATCAGGATAAAGGAC 57.099 33.333 0.00 0.00 0.00 3.85
321 322 9.901172 GGAAGTTTAAAGGAGTTAATCAGGATA 57.099 33.333 0.00 0.00 31.69 2.59
322 323 8.615705 AGGAAGTTTAAAGGAGTTAATCAGGAT 58.384 33.333 0.00 0.00 31.69 3.24
323 324 7.985589 AGGAAGTTTAAAGGAGTTAATCAGGA 58.014 34.615 0.00 0.00 31.69 3.86
324 325 9.384764 CTAGGAAGTTTAAAGGAGTTAATCAGG 57.615 37.037 0.00 0.00 31.69 3.86
325 326 9.945904 ACTAGGAAGTTTAAAGGAGTTAATCAG 57.054 33.333 0.00 0.00 31.69 2.90
328 329 9.011095 GCAACTAGGAAGTTTAAAGGAGTTAAT 57.989 33.333 0.00 0.00 43.60 1.40
329 330 7.172019 CGCAACTAGGAAGTTTAAAGGAGTTAA 59.828 37.037 0.00 0.00 43.60 2.01
330 331 6.647895 CGCAACTAGGAAGTTTAAAGGAGTTA 59.352 38.462 0.00 0.00 43.60 2.24
331 332 5.469084 CGCAACTAGGAAGTTTAAAGGAGTT 59.531 40.000 0.00 0.00 43.60 3.01
332 333 4.995487 CGCAACTAGGAAGTTTAAAGGAGT 59.005 41.667 0.00 0.00 43.60 3.85
333 334 5.235516 TCGCAACTAGGAAGTTTAAAGGAG 58.764 41.667 0.00 0.00 43.60 3.69
334 335 5.217978 TCGCAACTAGGAAGTTTAAAGGA 57.782 39.130 0.00 0.00 43.60 3.36
335 336 5.163754 CCATCGCAACTAGGAAGTTTAAAGG 60.164 44.000 0.00 0.00 43.60 3.11
336 337 5.673818 GCCATCGCAACTAGGAAGTTTAAAG 60.674 44.000 0.00 0.00 43.60 1.85
337 338 4.155280 GCCATCGCAACTAGGAAGTTTAAA 59.845 41.667 0.00 0.00 43.60 1.52
338 339 3.687698 GCCATCGCAACTAGGAAGTTTAA 59.312 43.478 0.00 0.00 43.60 1.52
339 340 3.055385 AGCCATCGCAACTAGGAAGTTTA 60.055 43.478 0.00 0.00 43.60 2.01
340 341 2.084546 GCCATCGCAACTAGGAAGTTT 58.915 47.619 0.00 0.00 43.60 2.66
342 343 0.905357 AGCCATCGCAACTAGGAAGT 59.095 50.000 0.00 0.00 37.65 3.01
343 344 1.576356 GAGCCATCGCAACTAGGAAG 58.424 55.000 0.00 0.00 37.52 3.46
344 345 0.178068 GGAGCCATCGCAACTAGGAA 59.822 55.000 0.00 0.00 37.52 3.36
345 346 0.975556 TGGAGCCATCGCAACTAGGA 60.976 55.000 0.00 0.00 37.52 2.94
346 347 0.811616 GTGGAGCCATCGCAACTAGG 60.812 60.000 0.00 0.00 37.52 3.02
347 348 1.148157 CGTGGAGCCATCGCAACTAG 61.148 60.000 0.00 0.00 37.52 2.57
348 349 1.153647 CGTGGAGCCATCGCAACTA 60.154 57.895 0.00 0.00 37.52 2.24
349 350 2.434884 CGTGGAGCCATCGCAACT 60.435 61.111 0.00 0.00 37.52 3.16
350 351 2.434185 TCGTGGAGCCATCGCAAC 60.434 61.111 0.00 0.00 37.52 4.17
351 352 1.600511 TAGTCGTGGAGCCATCGCAA 61.601 55.000 0.00 0.00 37.52 4.85
352 353 1.600511 TTAGTCGTGGAGCCATCGCA 61.601 55.000 0.00 0.00 37.52 5.10
353 354 0.872021 CTTAGTCGTGGAGCCATCGC 60.872 60.000 0.00 0.00 0.00 4.58
354 355 0.456221 ACTTAGTCGTGGAGCCATCG 59.544 55.000 0.00 0.00 0.00 3.84
355 356 1.202428 GGACTTAGTCGTGGAGCCATC 60.202 57.143 6.27 0.00 32.65 3.51
356 357 0.824759 GGACTTAGTCGTGGAGCCAT 59.175 55.000 6.27 0.00 32.65 4.40
357 358 0.251653 AGGACTTAGTCGTGGAGCCA 60.252 55.000 6.78 0.00 32.65 4.75
358 359 0.896226 AAGGACTTAGTCGTGGAGCC 59.104 55.000 8.39 0.00 32.65 4.70
359 360 2.029290 TGAAAGGACTTAGTCGTGGAGC 60.029 50.000 8.39 0.20 32.65 4.70
360 361 3.936372 TGAAAGGACTTAGTCGTGGAG 57.064 47.619 8.39 0.00 32.65 3.86
361 362 3.830178 TCATGAAAGGACTTAGTCGTGGA 59.170 43.478 8.39 0.16 32.65 4.02
362 363 3.927142 GTCATGAAAGGACTTAGTCGTGG 59.073 47.826 8.39 0.00 45.65 4.94
373 374 3.751175 GTCGTGGAATTGTCATGAAAGGA 59.249 43.478 0.00 0.00 32.70 3.36
374 375 3.501828 TGTCGTGGAATTGTCATGAAAGG 59.498 43.478 0.00 0.00 32.70 3.11
375 376 4.452114 TCTGTCGTGGAATTGTCATGAAAG 59.548 41.667 0.00 9.78 37.02 2.62
376 377 4.384940 TCTGTCGTGGAATTGTCATGAAA 58.615 39.130 0.00 0.00 32.70 2.69
377 378 4.001618 TCTGTCGTGGAATTGTCATGAA 57.998 40.909 0.00 0.00 32.70 2.57
378 379 3.676291 TCTGTCGTGGAATTGTCATGA 57.324 42.857 0.00 0.00 0.00 3.07
379 380 4.378770 CCTTTCTGTCGTGGAATTGTCATG 60.379 45.833 0.00 0.00 0.00 3.07
380 381 3.753272 CCTTTCTGTCGTGGAATTGTCAT 59.247 43.478 0.00 0.00 0.00 3.06
381 382 3.138304 CCTTTCTGTCGTGGAATTGTCA 58.862 45.455 0.00 0.00 0.00 3.58
382 383 2.484264 CCCTTTCTGTCGTGGAATTGTC 59.516 50.000 0.00 0.00 0.00 3.18
383 384 2.158667 ACCCTTTCTGTCGTGGAATTGT 60.159 45.455 0.00 0.00 0.00 2.71
384 385 2.504367 ACCCTTTCTGTCGTGGAATTG 58.496 47.619 0.00 0.00 0.00 2.32
385 386 2.951229 ACCCTTTCTGTCGTGGAATT 57.049 45.000 0.00 0.00 0.00 2.17
386 387 2.353406 CGTACCCTTTCTGTCGTGGAAT 60.353 50.000 0.00 0.00 0.00 3.01
387 388 1.000060 CGTACCCTTTCTGTCGTGGAA 60.000 52.381 0.00 0.00 0.00 3.53
388 389 0.599558 CGTACCCTTTCTGTCGTGGA 59.400 55.000 0.00 0.00 0.00 4.02
389 390 1.012486 GCGTACCCTTTCTGTCGTGG 61.012 60.000 0.00 0.00 0.00 4.94
390 391 1.342082 CGCGTACCCTTTCTGTCGTG 61.342 60.000 0.00 0.00 0.00 4.35
391 392 1.080974 CGCGTACCCTTTCTGTCGT 60.081 57.895 0.00 0.00 0.00 4.34
392 393 1.069378 GACGCGTACCCTTTCTGTCG 61.069 60.000 13.97 0.00 0.00 4.35
393 394 0.735287 GGACGCGTACCCTTTCTGTC 60.735 60.000 13.97 0.00 0.00 3.51
394 395 1.291272 GGACGCGTACCCTTTCTGT 59.709 57.895 13.97 0.00 0.00 3.41
395 396 0.108329 ATGGACGCGTACCCTTTCTG 60.108 55.000 20.91 0.00 0.00 3.02
396 397 0.611714 AATGGACGCGTACCCTTTCT 59.388 50.000 20.91 0.00 0.00 2.52
397 398 1.129811 CAAATGGACGCGTACCCTTTC 59.870 52.381 20.91 0.28 0.00 2.62
398 399 1.161843 CAAATGGACGCGTACCCTTT 58.838 50.000 20.91 19.07 0.00 3.11
399 400 1.303091 GCAAATGGACGCGTACCCTT 61.303 55.000 20.91 14.56 0.00 3.95
400 401 1.743995 GCAAATGGACGCGTACCCT 60.744 57.895 20.91 9.23 0.00 4.34
401 402 1.579084 TTGCAAATGGACGCGTACCC 61.579 55.000 20.91 14.94 0.00 3.69
402 403 0.238817 TTTGCAAATGGACGCGTACC 59.761 50.000 20.91 18.82 0.00 3.34
403 404 2.039327 TTTTGCAAATGGACGCGTAC 57.961 45.000 16.44 16.44 0.00 3.67
404 405 2.590073 CATTTTGCAAATGGACGCGTA 58.410 42.857 13.97 0.00 0.00 4.42
405 406 1.417372 CATTTTGCAAATGGACGCGT 58.583 45.000 13.85 13.85 0.00 6.01
406 407 0.093365 GCATTTTGCAAATGGACGCG 59.907 50.000 13.65 3.53 44.26 6.01
429 430 4.795268 TCGACACTTCAGACATCTGTTAC 58.205 43.478 8.70 0.00 44.12 2.50
435 436 5.250235 TCCTATTCGACACTTCAGACATC 57.750 43.478 0.00 0.00 0.00 3.06
437 438 5.462530 TTTCCTATTCGACACTTCAGACA 57.537 39.130 0.00 0.00 0.00 3.41
439 440 6.152831 TCTGATTTCCTATTCGACACTTCAGA 59.847 38.462 0.00 0.00 34.97 3.27
446 447 5.414789 TTGGTCTGATTTCCTATTCGACA 57.585 39.130 0.00 0.00 0.00 4.35
450 451 9.578439 CAAGAAAATTGGTCTGATTTCCTATTC 57.422 33.333 0.00 0.00 33.35 1.75
504 505 1.806542 GTGCAACATGACTCGTGGATT 59.193 47.619 0.00 0.00 36.32 3.01
547 548 2.902343 GGTGGCTCTAATGCGGGC 60.902 66.667 0.00 0.00 0.00 6.13
549 550 2.588877 CCGGTGGCTCTAATGCGG 60.589 66.667 0.00 0.00 0.00 5.69
551 552 0.179045 ATGTCCGGTGGCTCTAATGC 60.179 55.000 0.00 0.00 0.00 3.56
606 607 0.251877 TGGGTGTGGTGGATCGAGTA 60.252 55.000 0.00 0.00 0.00 2.59
680 681 6.126409 TCAGGGCGTAATTAAATCCAAGAAT 58.874 36.000 0.00 0.00 0.00 2.40
685 686 3.211045 GCTCAGGGCGTAATTAAATCCA 58.789 45.455 0.00 0.00 0.00 3.41
716 718 4.953667 TGTGATGATGATCTACTGAAGGC 58.046 43.478 0.00 0.00 0.00 4.35
735 737 4.108336 CTGTCGGTGATTGTCTATCTGTG 58.892 47.826 0.00 0.00 34.17 3.66
736 738 4.017126 TCTGTCGGTGATTGTCTATCTGT 58.983 43.478 0.00 0.00 34.17 3.41
747 768 0.324368 TAGGCCAGTCTGTCGGTGAT 60.324 55.000 5.01 0.00 0.00 3.06
771 792 0.036765 CTTACACGTGGCCCTTGCTA 60.037 55.000 21.57 0.00 37.74 3.49
832 854 0.609957 TTTGCAGGTCCAGGAGCATG 60.610 55.000 21.01 15.60 36.80 4.06
833 855 0.112995 TTTTGCAGGTCCAGGAGCAT 59.887 50.000 21.01 3.22 36.80 3.79
834 856 0.823356 GTTTTGCAGGTCCAGGAGCA 60.823 55.000 21.01 9.60 34.79 4.26
842 864 2.954611 GGAGCCGTTTTGCAGGTC 59.045 61.111 0.00 0.00 0.00 3.85
896 918 0.986019 TGGGCGGAATGGATGGTACT 60.986 55.000 0.00 0.00 0.00 2.73
897 919 0.818040 GTGGGCGGAATGGATGGTAC 60.818 60.000 0.00 0.00 0.00 3.34
898 920 1.275421 TGTGGGCGGAATGGATGGTA 61.275 55.000 0.00 0.00 0.00 3.25
899 921 2.275418 GTGGGCGGAATGGATGGT 59.725 61.111 0.00 0.00 0.00 3.55
900 922 1.825191 CTGTGGGCGGAATGGATGG 60.825 63.158 0.00 0.00 0.00 3.51
918 940 1.516423 GGAGGCTCGTAGTTGGGAC 59.484 63.158 8.69 0.00 0.00 4.46
956 979 4.824537 TCTTGTTTTGGAACGGATTGATGA 59.175 37.500 0.00 0.00 38.65 2.92
957 980 5.119931 TCTTGTTTTGGAACGGATTGATG 57.880 39.130 0.00 0.00 38.65 3.07
958 981 4.827284 ACTCTTGTTTTGGAACGGATTGAT 59.173 37.500 0.00 0.00 38.65 2.57
990 1013 4.227134 CTCGCCATGGAGGTCCGG 62.227 72.222 18.40 0.00 40.61 5.14
991 1014 4.227134 CCTCGCCATGGAGGTCCG 62.227 72.222 18.40 9.35 46.97 4.79
996 1019 2.825836 GTTGCCCTCGCCATGGAG 60.826 66.667 18.40 13.80 0.00 3.86
997 1020 4.776322 CGTTGCCCTCGCCATGGA 62.776 66.667 18.40 0.00 0.00 3.41
1154 1177 4.024809 CGAGAGTCCTTGAAAACCTTTCAC 60.025 45.833 1.37 0.00 0.00 3.18
1156 1179 3.498777 CCGAGAGTCCTTGAAAACCTTTC 59.501 47.826 0.00 0.00 0.00 2.62
1160 1183 1.157585 GCCGAGAGTCCTTGAAAACC 58.842 55.000 0.00 0.00 0.00 3.27
1198 1222 1.467342 CGGGGTCGGTTTGAAAAGATC 59.533 52.381 0.00 0.00 0.00 2.75
1207 1234 1.820481 CACACAACGGGGTCGGTTT 60.820 57.895 0.00 0.00 41.39 3.27
1214 1241 1.675552 AGAAGAAACACACAACGGGG 58.324 50.000 0.00 0.00 0.00 5.73
1335 1362 2.125673 ATGTAGTCGGTGTGCGCC 60.126 61.111 4.18 0.00 0.00 6.53
1379 1406 0.106708 TGGACGCAGATATGAAGGCC 59.893 55.000 0.00 0.00 0.00 5.19
1464 1508 1.512230 CATTGCATGAACGGTGGGG 59.488 57.895 0.00 0.00 0.00 4.96
1674 1752 3.449377 TGTTACCGAATGAGCTGGTATGA 59.551 43.478 0.00 0.00 38.02 2.15
1677 1755 5.353938 GTTATGTTACCGAATGAGCTGGTA 58.646 41.667 0.00 0.00 37.20 3.25
1855 1933 4.408993 TTCGATTGTTTGCTGTCATCAG 57.591 40.909 0.00 0.00 43.87 2.90
1999 2077 2.741985 CCTGTTGCGTCGCATCCA 60.742 61.111 22.41 18.73 38.76 3.41
2345 3618 6.710597 AGCTAGGAATACACTTATTCGTGA 57.289 37.500 8.98 0.00 43.28 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.