Multiple sequence alignment - TraesCS2B01G275200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G275200 chr2B 100.000 3256 0 0 1 3256 379831269 379834524 0.000000e+00 6013.0
1 TraesCS2B01G275200 chr2D 97.277 2240 46 3 988 3225 312064418 312062192 0.000000e+00 3784.0
2 TraesCS2B01G275200 chr2D 89.501 581 39 10 2 582 312178984 312178426 0.000000e+00 715.0
3 TraesCS2B01G275200 chr2D 91.371 394 19 5 58 442 49248948 49248561 2.880000e-145 525.0
4 TraesCS2B01G275200 chr2D 87.685 406 38 9 599 997 312065217 312064817 2.290000e-126 462.0
5 TraesCS2B01G275200 chr2D 92.571 175 9 3 531 701 291456420 291456246 6.980000e-62 248.0
6 TraesCS2B01G275200 chr2A 92.591 2308 136 18 2 2293 425808342 425810630 0.000000e+00 3282.0
7 TraesCS2B01G275200 chr2A 95.349 172 8 0 2558 2729 425810749 425810920 1.150000e-69 274.0
8 TraesCS2B01G275200 chr2A 87.727 220 21 4 2736 2953 425832022 425832237 5.390000e-63 252.0
9 TraesCS2B01G275200 chr2A 84.706 170 9 6 2948 3117 425845050 425845202 1.560000e-33 154.0
10 TraesCS2B01G275200 chrUn 91.117 394 19 6 58 442 237100809 237100423 1.340000e-143 520.0
11 TraesCS2B01G275200 chrUn 92.529 174 10 1 531 701 182451838 182452011 2.510000e-61 246.0
12 TraesCS2B01G275200 chr7D 91.117 394 19 6 58 442 381901159 381900773 1.340000e-143 520.0
13 TraesCS2B01G275200 chr7D 78.659 164 31 2 719 881 173900777 173900937 4.440000e-19 106.0
14 TraesCS2B01G275200 chr4D 90.680 397 21 6 55 442 123636297 123636686 6.230000e-142 514.0
15 TraesCS2B01G275200 chr4D 88.660 97 6 1 308 404 336583858 336583767 2.660000e-21 113.0
16 TraesCS2B01G275200 chr1D 90.355 394 22 6 58 442 141328447 141328061 1.350000e-138 503.0
17 TraesCS2B01G275200 chr1D 81.746 126 20 3 718 841 383169601 383169477 5.750000e-18 102.0
18 TraesCS2B01G275200 chr7B 92.529 174 10 1 531 701 716781558 716781731 2.510000e-61 246.0
19 TraesCS2B01G275200 chr7B 92.529 174 10 1 531 701 742951787 742951614 2.510000e-61 246.0
20 TraesCS2B01G275200 chr7A 92.529 174 10 2 531 701 60171815 60171642 2.510000e-61 246.0
21 TraesCS2B01G275200 chr6B 92.529 174 10 1 531 701 388231678 388231505 2.510000e-61 246.0
22 TraesCS2B01G275200 chr5B 92.529 174 10 1 531 701 567244175 567244002 2.510000e-61 246.0
23 TraesCS2B01G275200 chr6D 91.515 165 12 2 55 218 166773763 166773926 3.270000e-55 226.0
24 TraesCS2B01G275200 chr6D 89.474 95 5 1 307 401 127339306 127339395 7.380000e-22 115.0
25 TraesCS2B01G275200 chr6D 81.481 108 12 6 778 883 315812731 315812630 7.490000e-12 82.4
26 TraesCS2B01G275200 chr6A 87.647 170 11 4 58 218 256475194 256475026 4.290000e-44 189.0
27 TraesCS2B01G275200 chr5A 80.741 135 23 2 718 852 455472002 455471871 5.750000e-18 102.0
28 TraesCS2B01G275200 chr4B 76.733 202 32 10 708 906 107666617 107666806 7.430000e-17 99.0
29 TraesCS2B01G275200 chr4A 100.000 29 0 0 504 532 622122525 622122497 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G275200 chr2B 379831269 379834524 3255 False 6013 6013 100.000 1 3256 1 chr2B.!!$F1 3255
1 TraesCS2B01G275200 chr2D 312062192 312065217 3025 True 2123 3784 92.481 599 3225 2 chr2D.!!$R4 2626
2 TraesCS2B01G275200 chr2D 312178426 312178984 558 True 715 715 89.501 2 582 1 chr2D.!!$R3 580
3 TraesCS2B01G275200 chr2A 425808342 425810920 2578 False 1778 3282 93.970 2 2729 2 chr2A.!!$F3 2727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.179174 CCCCGCACTAATTTGAACGC 60.179 55.0 0.0 0.0 0.0 4.84 F
760 771 0.446222 CGCCCACACTTTTATGACGG 59.554 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1276 1703 0.328592 TAGGCAGTGAGTCCGAGTCT 59.671 55.0 4.85 0.00 0.00 3.24 R
2674 3113 0.179034 GAACTAGAGGCAGGCCATGG 60.179 60.0 13.63 7.63 38.92 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.179174 CCCCGCACTAATTTGAACGC 60.179 55.000 0.00 0.00 0.00 4.84
33 34 1.132262 CCGCACTAATTTGAACGCCAT 59.868 47.619 0.00 0.00 0.00 4.40
49 50 3.438781 ACGCCATGATTCATTTACGTTGT 59.561 39.130 10.82 0.00 0.00 3.32
75 76 8.526978 TGCTCTAATTGTTTGCAATACCATTTA 58.473 29.630 0.00 4.61 43.89 1.40
151 160 4.737578 AGTCATATAAGTCGGGGCTTCTA 58.262 43.478 0.00 0.00 0.00 2.10
160 169 2.633481 GTCGGGGCTTCTATTGGATAGT 59.367 50.000 0.00 0.00 34.47 2.12
417 427 2.159000 CCGTTACTATGGGGAAGTCACC 60.159 54.545 0.00 0.00 40.76 4.02
437 447 3.777465 CGAGAAAACTCGGATGAGGTA 57.223 47.619 11.09 0.00 42.87 3.08
439 449 3.489398 CGAGAAAACTCGGATGAGGTAGG 60.489 52.174 11.09 0.00 42.87 3.18
442 452 4.160626 AGAAAACTCGGATGAGGTAGGAAG 59.839 45.833 0.00 0.00 42.87 3.46
457 467 5.310857 AGGTAGGAAGGAAGTCAAAAGTGAT 59.689 40.000 0.00 0.00 35.80 3.06
468 478 5.133221 AGTCAAAAGTGATGCTTACAGGTT 58.867 37.500 0.00 0.00 36.17 3.50
472 482 6.714810 TCAAAAGTGATGCTTACAGGTTGTAT 59.285 34.615 0.00 0.00 36.17 2.29
490 500 7.014615 AGGTTGTATGACAATTGCTTCTTTTCT 59.985 33.333 5.05 0.00 40.59 2.52
597 607 5.299531 CGGAGTCTAGTCTACCAATGAATGA 59.700 44.000 0.00 0.00 0.00 2.57
627 637 0.468400 CCTCCCCTCTAAGGTCTCGG 60.468 65.000 0.00 0.00 31.93 4.63
644 654 3.564644 TCTCGGTTGGATAATCGACTCTC 59.435 47.826 0.00 0.00 43.94 3.20
655 665 1.852633 TCGACTCTCATGACCCACAT 58.147 50.000 0.00 0.00 40.17 3.21
680 690 3.462483 GGTTTTTCCCAACCGTTCATT 57.538 42.857 0.00 0.00 37.07 2.57
701 711 9.793259 TTCATTCCTCTCGGCTATTAAATAAAT 57.207 29.630 0.00 0.00 0.00 1.40
702 712 9.793259 TCATTCCTCTCGGCTATTAAATAAATT 57.207 29.630 0.00 0.00 0.00 1.82
754 764 1.271102 GCAATTCCGCCCACACTTTTA 59.729 47.619 0.00 0.00 0.00 1.52
758 769 1.816074 TCCGCCCACACTTTTATGAC 58.184 50.000 0.00 0.00 0.00 3.06
760 771 0.446222 CGCCCACACTTTTATGACGG 59.554 55.000 0.00 0.00 0.00 4.79
770 781 6.693545 CACACTTTTATGACGGCAACTTTAAA 59.306 34.615 0.00 0.00 0.00 1.52
776 787 9.745880 TTTTATGACGGCAACTTTAAATACAAA 57.254 25.926 0.00 0.00 0.00 2.83
783 794 6.310224 CGGCAACTTTAAATACAAAAGGATGG 59.690 38.462 0.00 0.00 38.09 3.51
823 835 5.069516 AGCATGTCAACTTTCTGTTTGGATT 59.930 36.000 0.00 0.00 36.63 3.01
825 837 7.039504 AGCATGTCAACTTTCTGTTTGGATTAT 60.040 33.333 0.00 0.00 36.63 1.28
902 914 1.658994 AACGTGTGGGTGTGTTACTG 58.341 50.000 0.00 0.00 0.00 2.74
906 923 1.953686 GTGTGGGTGTGTTACTGCATT 59.046 47.619 0.00 0.00 0.00 3.56
907 924 1.952990 TGTGGGTGTGTTACTGCATTG 59.047 47.619 0.00 0.00 0.00 2.82
917 934 0.865111 TACTGCATTGCGTGTGACAC 59.135 50.000 5.47 5.47 0.00 3.67
922 939 2.551887 TGCATTGCGTGTGACACTTATT 59.448 40.909 14.42 0.00 31.34 1.40
1225 1652 2.438614 TCGGCTCTCTCGTCCCTG 60.439 66.667 0.00 0.00 0.00 4.45
1276 1703 0.606096 TCGCGTCCTTTCTCCAATCA 59.394 50.000 5.77 0.00 0.00 2.57
1306 1733 0.109086 CACTGCCTACCACTCTCACG 60.109 60.000 0.00 0.00 0.00 4.35
2086 2513 1.965930 GTCCATGGTTGTCGCTGCA 60.966 57.895 12.58 0.00 0.00 4.41
2133 2560 0.955428 TTGAACCGCACATGGCTCTC 60.955 55.000 0.00 0.00 41.67 3.20
2220 2652 3.365472 GGAGGGGCAACAGAAACAATAT 58.635 45.455 0.00 0.00 39.74 1.28
2226 2658 5.510520 GGGGCAACAGAAACAATATGTTTGA 60.511 40.000 12.75 0.00 44.92 2.69
2383 2815 9.553064 GATTGTAGTGAGATGGTGATTCTATTT 57.447 33.333 0.00 0.00 0.00 1.40
2646 3085 8.122472 TCTGTATGTACTGAAGAATCACTGAA 57.878 34.615 0.00 0.00 32.34 3.02
2674 3113 5.886960 ATCAGACAAAGGTGTTAATGCTC 57.113 39.130 0.00 0.00 38.41 4.26
2748 3187 5.873179 ATTCGTATAATTATTGCACGGGG 57.127 39.130 15.64 0.00 33.59 5.73
2753 3192 6.487331 TCGTATAATTATTGCACGGGGAAATT 59.513 34.615 15.64 0.00 33.59 1.82
2799 3238 2.076863 GACGATCCTTGTTTGGGAGTG 58.923 52.381 0.00 0.00 36.21 3.51
2840 3279 5.012354 TCCAGAGTAACTCCGTAATGGTTTT 59.988 40.000 0.00 0.00 39.52 2.43
2859 3298 6.147164 TGGTTTTGCTAATTCTTAGTCGACTG 59.853 38.462 28.12 12.46 35.66 3.51
2877 3316 7.599245 AGTCGACTGAAATTTAACTAAGTCCTG 59.401 37.037 19.30 0.00 32.29 3.86
2887 3326 3.088789 ACTAAGTCCTGGTCGACTCAT 57.911 47.619 16.46 0.00 42.35 2.90
2890 3329 5.014858 ACTAAGTCCTGGTCGACTCATAAA 58.985 41.667 16.46 0.00 42.35 1.40
2991 3430 9.720667 ATTAACCTACGTTTTTGTGTTAAGTTC 57.279 29.630 0.00 0.00 33.31 3.01
2992 3431 6.740411 ACCTACGTTTTTGTGTTAAGTTCA 57.260 33.333 0.00 0.00 0.00 3.18
3172 3611 0.179067 AGTTCGTTGCCTCCGTCAAA 60.179 50.000 0.00 0.00 0.00 2.69
3192 3631 9.611284 CGTCAAATTTTTCTCTCACAAATATGA 57.389 29.630 0.00 0.00 0.00 2.15
3225 3664 9.071276 GCATATCTTTTCATTGATAGGAAGGAA 57.929 33.333 0.00 0.00 31.13 3.36
3230 3669 7.480760 TTTTCATTGATAGGAAGGAAAAGGG 57.519 36.000 0.00 0.00 39.44 3.95
3231 3670 5.796502 TCATTGATAGGAAGGAAAAGGGT 57.203 39.130 0.00 0.00 0.00 4.34
3232 3671 6.901615 TCATTGATAGGAAGGAAAAGGGTA 57.098 37.500 0.00 0.00 0.00 3.69
3233 3672 6.659824 TCATTGATAGGAAGGAAAAGGGTAC 58.340 40.000 0.00 0.00 0.00 3.34
3234 3673 6.216662 TCATTGATAGGAAGGAAAAGGGTACA 59.783 38.462 0.00 0.00 0.00 2.90
3235 3674 6.457159 TTGATAGGAAGGAAAAGGGTACAA 57.543 37.500 0.00 0.00 0.00 2.41
3236 3675 6.062258 TGATAGGAAGGAAAAGGGTACAAG 57.938 41.667 0.00 0.00 0.00 3.16
3237 3676 3.808834 AGGAAGGAAAAGGGTACAAGG 57.191 47.619 0.00 0.00 0.00 3.61
3238 3677 3.061369 AGGAAGGAAAAGGGTACAAGGT 58.939 45.455 0.00 0.00 0.00 3.50
3239 3678 3.154710 GGAAGGAAAAGGGTACAAGGTG 58.845 50.000 0.00 0.00 0.00 4.00
3240 3679 2.287977 AGGAAAAGGGTACAAGGTGC 57.712 50.000 0.00 0.00 0.00 5.01
3241 3680 1.203013 AGGAAAAGGGTACAAGGTGCC 60.203 52.381 0.00 0.00 37.58 5.01
3242 3681 1.479757 GGAAAAGGGTACAAGGTGCCA 60.480 52.381 5.86 0.00 40.07 4.92
3243 3682 2.312390 GAAAAGGGTACAAGGTGCCAA 58.688 47.619 5.86 0.00 40.07 4.52
3244 3683 1.699730 AAAGGGTACAAGGTGCCAAC 58.300 50.000 5.86 0.00 40.07 3.77
3245 3684 0.850784 AAGGGTACAAGGTGCCAACT 59.149 50.000 5.86 0.00 40.07 3.16
3246 3685 0.400594 AGGGTACAAGGTGCCAACTC 59.599 55.000 5.86 0.00 40.07 3.01
3247 3686 0.109723 GGGTACAAGGTGCCAACTCA 59.890 55.000 5.86 0.00 40.07 3.41
3248 3687 1.477923 GGGTACAAGGTGCCAACTCAA 60.478 52.381 5.86 0.00 40.07 3.02
3249 3688 1.880027 GGTACAAGGTGCCAACTCAAG 59.120 52.381 0.00 0.00 38.20 3.02
3250 3689 1.880027 GTACAAGGTGCCAACTCAAGG 59.120 52.381 0.00 0.00 0.00 3.61
3251 3690 0.258774 ACAAGGTGCCAACTCAAGGT 59.741 50.000 0.00 0.00 0.00 3.50
3252 3691 0.954452 CAAGGTGCCAACTCAAGGTC 59.046 55.000 0.00 0.00 0.00 3.85
3253 3692 0.846693 AAGGTGCCAACTCAAGGTCT 59.153 50.000 0.00 0.00 0.00 3.85
3254 3693 0.846693 AGGTGCCAACTCAAGGTCTT 59.153 50.000 0.00 0.00 0.00 3.01
3255 3694 0.954452 GGTGCCAACTCAAGGTCTTG 59.046 55.000 4.44 4.44 41.71 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.985413 AGCACAACGTAAATGAATCATGG 58.015 39.130 0.00 0.00 0.00 3.66
33 34 7.609760 ATTAGAGCACAACGTAAATGAATCA 57.390 32.000 0.00 0.00 0.00 2.57
49 50 5.973899 TGGTATTGCAAACAATTAGAGCA 57.026 34.783 1.71 0.00 44.21 4.26
75 76 8.893727 CGAAAGTAATCCCTTGAAGTTCAATAT 58.106 33.333 18.35 9.90 35.59 1.28
119 120 7.560262 CCCCGACTTATATGACTATTCCTATCA 59.440 40.741 0.00 0.00 0.00 2.15
137 146 1.580059 TCCAATAGAAGCCCCGACTT 58.420 50.000 0.00 0.00 0.00 3.01
138 147 1.807814 ATCCAATAGAAGCCCCGACT 58.192 50.000 0.00 0.00 0.00 4.18
151 160 4.415881 TGGCGAACATACACTATCCAAT 57.584 40.909 0.00 0.00 0.00 3.16
160 169 3.950397 AGGAAGAAATGGCGAACATACA 58.050 40.909 0.00 0.00 39.40 2.29
214 223 2.421073 TGGTTCGAGTGATACACTACGG 59.579 50.000 16.58 7.07 45.44 4.02
343 353 8.246871 GGAAAGGAAATTCGAAGAAATCAGATT 58.753 33.333 3.35 0.00 45.90 2.40
391 401 2.077687 TCCCCATAGTAACGGGAGAC 57.922 55.000 9.20 0.00 46.34 3.36
401 411 1.006758 TCTCGGTGACTTCCCCATAGT 59.993 52.381 0.00 0.00 0.00 2.12
437 447 3.823304 GCATCACTTTTGACTTCCTTCCT 59.177 43.478 0.00 0.00 33.38 3.36
439 449 5.444663 AAGCATCACTTTTGACTTCCTTC 57.555 39.130 0.00 0.00 33.71 3.46
442 452 5.335191 CCTGTAAGCATCACTTTTGACTTCC 60.335 44.000 0.00 0.00 39.97 3.46
457 467 5.335583 GCAATTGTCATACAACCTGTAAGCA 60.336 40.000 7.40 0.00 41.40 3.91
468 478 6.265196 ACCAGAAAAGAAGCAATTGTCATACA 59.735 34.615 7.40 0.00 0.00 2.29
472 482 5.827797 AGTACCAGAAAAGAAGCAATTGTCA 59.172 36.000 7.40 0.00 0.00 3.58
597 607 1.295292 AGAGGGGAGGACACACCATAT 59.705 52.381 0.00 0.00 42.04 1.78
627 637 4.985409 GGTCATGAGAGTCGATTATCCAAC 59.015 45.833 0.00 0.00 0.00 3.77
701 711 3.743911 ACGTGTGAGCGTTATCATTTGAA 59.256 39.130 0.00 0.00 43.04 2.69
702 712 3.122780 CACGTGTGAGCGTTATCATTTGA 59.877 43.478 7.58 0.00 43.83 2.69
729 739 1.737735 GTGGGCGGAATTGCTTTGC 60.738 57.895 0.00 0.00 34.52 3.68
740 750 0.446222 CGTCATAAAAGTGTGGGCGG 59.554 55.000 0.00 0.00 0.00 6.13
754 764 6.866248 CCTTTTGTATTTAAAGTTGCCGTCAT 59.134 34.615 0.00 0.00 32.06 3.06
758 769 6.310224 CCATCCTTTTGTATTTAAAGTTGCCG 59.690 38.462 0.00 0.00 32.06 5.69
760 771 6.648725 TGCCATCCTTTTGTATTTAAAGTTGC 59.351 34.615 0.00 0.00 32.06 4.17
770 781 8.374743 ACAAATAAAGTTGCCATCCTTTTGTAT 58.625 29.630 0.00 0.00 33.24 2.29
776 787 6.418057 TTCACAAATAAAGTTGCCATCCTT 57.582 33.333 0.00 0.00 31.29 3.36
783 794 5.691305 TGACATGCTTCACAAATAAAGTTGC 59.309 36.000 0.00 0.00 31.29 4.17
792 803 5.105797 ACAGAAAGTTGACATGCTTCACAAA 60.106 36.000 0.00 0.00 0.00 2.83
885 897 0.812014 TGCAGTAACACACCCACACG 60.812 55.000 0.00 0.00 0.00 4.49
886 898 1.604604 ATGCAGTAACACACCCACAC 58.395 50.000 0.00 0.00 0.00 3.82
893 905 1.003008 CACACGCAATGCAGTAACACA 60.003 47.619 5.91 0.00 0.00 3.72
895 907 1.262950 GTCACACGCAATGCAGTAACA 59.737 47.619 5.91 0.00 0.00 2.41
896 908 1.262950 TGTCACACGCAATGCAGTAAC 59.737 47.619 5.91 0.00 0.00 2.50
897 909 1.262950 GTGTCACACGCAATGCAGTAA 59.737 47.619 5.91 0.00 0.00 2.24
899 911 0.815213 AGTGTCACACGCAATGCAGT 60.815 50.000 5.91 0.00 39.64 4.40
902 914 2.900122 ATAAGTGTCACACGCAATGC 57.100 45.000 1.22 0.00 39.64 3.56
932 952 8.837389 ACCAGTGAAGTCTGTTTTAAAGTATTC 58.163 33.333 0.00 0.00 34.02 1.75
935 955 6.764560 GGACCAGTGAAGTCTGTTTTAAAGTA 59.235 38.462 0.00 0.00 34.56 2.24
936 956 5.589050 GGACCAGTGAAGTCTGTTTTAAAGT 59.411 40.000 0.00 0.00 34.56 2.66
937 957 5.008712 GGGACCAGTGAAGTCTGTTTTAAAG 59.991 44.000 0.00 0.00 34.56 1.85
1202 1629 3.222855 CGAGAGAGCCGAGGCCAT 61.223 66.667 10.95 0.00 43.17 4.40
1262 1689 2.497675 CCGAGTCTGATTGGAGAAAGGA 59.502 50.000 0.00 0.00 0.00 3.36
1276 1703 0.328592 TAGGCAGTGAGTCCGAGTCT 59.671 55.000 4.85 0.00 0.00 3.24
1306 1733 0.462759 AGGCGAGCTTGGATAGTTGC 60.463 55.000 2.37 0.00 0.00 4.17
1630 2057 0.768221 TGAAGACCTCCACCCAGCTT 60.768 55.000 0.00 0.00 0.00 3.74
1957 2384 0.600255 ACTCAAGGAAAGACCGCACG 60.600 55.000 0.00 0.00 44.74 5.34
2086 2513 4.641541 TGCAAGCACAATACTATGCAGATT 59.358 37.500 0.00 0.00 44.59 2.40
2150 2577 9.601971 GTATATTCTCTACTCAAGTAAAGCTCG 57.398 37.037 0.00 0.00 0.00 5.03
2398 2830 5.048083 TCCGAGCAGATTTTAAAATTGTGCT 60.048 36.000 31.77 31.77 44.68 4.40
2599 3038 7.920682 ACAGAGTAAATGAAGAAACGCAAAATT 59.079 29.630 0.00 0.00 0.00 1.82
2646 3085 7.651808 CATTAACACCTTTGTCTGATTGTTCT 58.348 34.615 0.00 0.00 33.55 3.01
2674 3113 0.179034 GAACTAGAGGCAGGCCATGG 60.179 60.000 13.63 7.63 38.92 3.66
2713 3152 6.998258 ATTATACGAATACGGGAAGAAACG 57.002 37.500 0.00 0.00 44.46 3.60
2799 3238 1.559682 TGGATACAGAACCCTTCCAGC 59.440 52.381 0.00 0.00 46.17 4.85
2859 3298 6.872547 AGTCGACCAGGACTTAGTTAAATTTC 59.127 38.462 13.01 0.00 44.65 2.17
2877 3316 4.931661 TGTATCCCTTTATGAGTCGACC 57.068 45.455 13.01 4.42 0.00 4.79
2887 3326 5.369404 TCTCCTTGCATCATGTATCCCTTTA 59.631 40.000 0.00 0.00 0.00 1.85
2890 3329 3.321039 TCTCCTTGCATCATGTATCCCT 58.679 45.455 0.00 0.00 0.00 4.20
2939 3378 8.035448 AGACATAAGGGGATTAAGGACTAAAG 57.965 38.462 0.00 0.00 0.00 1.85
3145 3584 0.677842 AGGCAACGAACTAACCGACT 59.322 50.000 0.00 0.00 46.39 4.18
3172 3611 9.927081 ACCCTATCATATTTGTGAGAGAAAAAT 57.073 29.630 1.12 0.00 39.24 1.82
3192 3631 9.458727 CTATCAATGAAAAGATATGCACCCTAT 57.541 33.333 0.00 0.00 0.00 2.57
3225 3664 1.216930 AGTTGGCACCTTGTACCCTTT 59.783 47.619 0.00 0.00 0.00 3.11
3226 3665 0.850784 AGTTGGCACCTTGTACCCTT 59.149 50.000 0.00 0.00 0.00 3.95
3227 3666 0.400594 GAGTTGGCACCTTGTACCCT 59.599 55.000 0.00 0.00 0.00 4.34
3228 3667 0.109723 TGAGTTGGCACCTTGTACCC 59.890 55.000 0.00 0.00 0.00 3.69
3229 3668 1.880027 CTTGAGTTGGCACCTTGTACC 59.120 52.381 0.00 0.00 0.00 3.34
3230 3669 1.880027 CCTTGAGTTGGCACCTTGTAC 59.120 52.381 0.00 0.00 0.00 2.90
3231 3670 1.493022 ACCTTGAGTTGGCACCTTGTA 59.507 47.619 0.00 0.00 0.00 2.41
3232 3671 0.258774 ACCTTGAGTTGGCACCTTGT 59.741 50.000 0.00 0.00 0.00 3.16
3233 3672 0.954452 GACCTTGAGTTGGCACCTTG 59.046 55.000 0.00 0.00 0.00 3.61
3234 3673 0.846693 AGACCTTGAGTTGGCACCTT 59.153 50.000 0.00 0.00 0.00 3.50
3235 3674 0.846693 AAGACCTTGAGTTGGCACCT 59.153 50.000 0.00 0.00 0.00 4.00
3236 3675 0.954452 CAAGACCTTGAGTTGGCACC 59.046 55.000 3.79 0.00 42.93 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.