Multiple sequence alignment - TraesCS2B01G274600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G274600 chr2B 100.000 2318 0 0 1 2318 378059971 378057654 0.000000e+00 4281.0
1 TraesCS2B01G274600 chr2B 90.139 1227 111 8 2 1220 1670550 1669326 0.000000e+00 1587.0
2 TraesCS2B01G274600 chr2B 79.039 458 81 13 1705 2153 421153894 421153443 1.350000e-77 300.0
3 TraesCS2B01G274600 chr2B 92.424 66 0 5 1703 1766 245122448 245122386 3.170000e-14 89.8
4 TraesCS2B01G274600 chr5B 91.292 1355 109 6 2 1349 581216173 581217525 0.000000e+00 1840.0
5 TraesCS2B01G274600 chr5B 88.881 1349 131 7 2 1343 210730783 210732119 0.000000e+00 1642.0
6 TraesCS2B01G274600 chr5B 84.967 153 21 2 1993 2144 14743733 14743884 1.110000e-33 154.0
7 TraesCS2B01G274600 chr5B 91.228 57 4 1 1705 1760 421859200 421859144 2.470000e-10 76.8
8 TraesCS2B01G274600 chr6D 89.556 1350 133 6 2 1344 25818615 25817267 0.000000e+00 1705.0
9 TraesCS2B01G274600 chr2D 87.760 1348 159 4 2 1343 6633964 6635311 0.000000e+00 1570.0
10 TraesCS2B01G274600 chr2D 81.013 237 43 2 1919 2154 311569176 311568941 1.090000e-43 187.0
11 TraesCS2B01G274600 chr3B 86.464 1352 162 9 2 1343 815977153 815975813 0.000000e+00 1463.0
12 TraesCS2B01G274600 chr3B 89.744 546 48 4 1706 2250 747564674 747564136 0.000000e+00 691.0
13 TraesCS2B01G274600 chr3D 86.055 1341 174 8 5 1343 68330995 68329666 0.000000e+00 1428.0
14 TraesCS2B01G274600 chr3D 88.060 67 6 2 1705 1769 579217333 579217267 6.870000e-11 78.7
15 TraesCS2B01G274600 chr3A 84.644 1348 199 5 2 1343 448305303 448306648 0.000000e+00 1336.0
16 TraesCS2B01G274600 chr7D 87.275 998 121 4 356 1347 606676921 606677918 0.000000e+00 1134.0
17 TraesCS2B01G274600 chr7D 96.296 54 1 1 1706 1758 554812708 554812655 1.140000e-13 87.9
18 TraesCS2B01G274600 chr1B 89.945 547 53 2 1705 2250 360372556 360372011 0.000000e+00 704.0
19 TraesCS2B01G274600 chr1B 82.099 162 25 4 1986 2144 188933186 188933026 4.020000e-28 135.0
20 TraesCS2B01G274600 chr4B 85.299 551 71 9 1705 2248 546090253 546089706 5.590000e-156 560.0
21 TraesCS2B01G274600 chr5D 82.130 554 90 8 1702 2249 370661713 370662263 1.250000e-127 466.0
22 TraesCS2B01G274600 chr6A 75.536 466 91 21 1705 2154 100751760 100751302 8.390000e-50 207.0
23 TraesCS2B01G274600 chr1D 96.364 55 1 1 1705 1758 417975587 417975533 3.170000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G274600 chr2B 378057654 378059971 2317 True 4281 4281 100.000 1 2318 1 chr2B.!!$R3 2317
1 TraesCS2B01G274600 chr2B 1669326 1670550 1224 True 1587 1587 90.139 2 1220 1 chr2B.!!$R1 1218
2 TraesCS2B01G274600 chr5B 581216173 581217525 1352 False 1840 1840 91.292 2 1349 1 chr5B.!!$F3 1347
3 TraesCS2B01G274600 chr5B 210730783 210732119 1336 False 1642 1642 88.881 2 1343 1 chr5B.!!$F2 1341
4 TraesCS2B01G274600 chr6D 25817267 25818615 1348 True 1705 1705 89.556 2 1344 1 chr6D.!!$R1 1342
5 TraesCS2B01G274600 chr2D 6633964 6635311 1347 False 1570 1570 87.760 2 1343 1 chr2D.!!$F1 1341
6 TraesCS2B01G274600 chr3B 815975813 815977153 1340 True 1463 1463 86.464 2 1343 1 chr3B.!!$R2 1341
7 TraesCS2B01G274600 chr3B 747564136 747564674 538 True 691 691 89.744 1706 2250 1 chr3B.!!$R1 544
8 TraesCS2B01G274600 chr3D 68329666 68330995 1329 True 1428 1428 86.055 5 1343 1 chr3D.!!$R1 1338
9 TraesCS2B01G274600 chr3A 448305303 448306648 1345 False 1336 1336 84.644 2 1343 1 chr3A.!!$F1 1341
10 TraesCS2B01G274600 chr7D 606676921 606677918 997 False 1134 1134 87.275 356 1347 1 chr7D.!!$F1 991
11 TraesCS2B01G274600 chr1B 360372011 360372556 545 True 704 704 89.945 1705 2250 1 chr1B.!!$R2 545
12 TraesCS2B01G274600 chr4B 546089706 546090253 547 True 560 560 85.299 1705 2248 1 chr4B.!!$R1 543
13 TraesCS2B01G274600 chr5D 370661713 370662263 550 False 466 466 82.130 1702 2249 1 chr5D.!!$F1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
857 867 0.252558 AGGGATACGGTGGTCCTGTT 60.253 55.0 12.29 0.15 34.84 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2277 2300 0.398318 GGGTCTCAACCTTGCTCACT 59.602 55.0 0.0 0.0 45.66 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.063717 TCATTTTGCCCCATCTCTCCC 60.064 52.381 0.00 0.00 0.00 4.30
33 34 1.228510 CCCATCTCTCCCAAAGGCC 59.771 63.158 0.00 0.00 0.00 5.19
49 50 1.896660 GCCCTTGTCGCCTGAACAA 60.897 57.895 0.00 0.00 0.00 2.83
83 85 3.509442 TCTTGATGAAAATGGGGCTTGT 58.491 40.909 0.00 0.00 0.00 3.16
108 110 3.435671 GGTGGATCGTCTTCGTGAATTTT 59.564 43.478 0.00 0.00 38.33 1.82
153 155 7.924947 CAGTATATCACAAAGATCAGAGCTTCA 59.075 37.037 0.25 0.00 38.19 3.02
199 201 0.979665 CTGGTTCCAGGAGAAGAGCA 59.020 55.000 10.71 0.00 34.29 4.26
278 280 3.857157 TGCAGGTGGTTCTTCTAGTTT 57.143 42.857 0.00 0.00 0.00 2.66
406 409 2.552315 CAACAGTGCAAGAATTACCGGT 59.448 45.455 13.98 13.98 0.00 5.28
417 420 3.053917 AGAATTACCGGTATTTGGCCACT 60.054 43.478 22.90 12.28 0.00 4.00
424 427 1.009829 GTATTTGGCCACTCGCTCAG 58.990 55.000 3.88 0.00 37.74 3.35
466 469 4.232122 TGGAGGAGGAGTCTACCTTTCATA 59.768 45.833 9.32 0.00 40.73 2.15
470 473 4.342665 GGAGGAGTCTACCTTTCATACCTG 59.657 50.000 0.00 0.00 40.73 4.00
508 511 4.074970 AGCGAGAATTTTGTGGATCAACT 58.925 39.130 1.02 0.00 35.61 3.16
532 535 2.103094 CGTATGAGATGGCCTCTTCCAA 59.897 50.000 3.32 0.00 42.44 3.53
555 559 1.067821 GACGATCTCCTCATCCACACC 59.932 57.143 0.00 0.00 0.00 4.16
587 591 5.116084 TGGCTAATGCTCCTACTTGATTT 57.884 39.130 0.00 0.00 39.59 2.17
595 599 5.620206 TGCTCCTACTTGATTTCTGTTCAA 58.380 37.500 0.00 0.00 0.00 2.69
674 678 4.525487 TGACTGTTATCACGGTAAGGAAGT 59.475 41.667 0.00 0.00 43.10 3.01
744 748 2.668550 AACCTCGCGGGCAAGTTC 60.669 61.111 6.13 0.00 39.10 3.01
756 760 2.092699 GGGCAAGTTCTCAGCTAAGGAT 60.093 50.000 0.00 0.00 0.00 3.24
798 802 1.695114 CGATGCCATAGGGGGTGACA 61.695 60.000 0.00 0.00 37.04 3.58
819 823 1.531677 CGCCAAAACATGACTATGCCG 60.532 52.381 0.00 0.00 37.85 5.69
820 824 1.472480 GCCAAAACATGACTATGCCGT 59.528 47.619 0.00 0.00 37.85 5.68
851 861 0.759436 CTGGCTAGGGATACGGTGGT 60.759 60.000 0.00 0.00 37.60 4.16
857 867 0.252558 AGGGATACGGTGGTCCTGTT 60.253 55.000 12.29 0.15 34.84 3.16
941 951 6.306987 ACAGTGAGGGTTCAATCTTATTTGT 58.693 36.000 0.00 0.00 34.49 2.83
1040 1054 7.611467 TCTTGCCATACATCATTCAAACTTACT 59.389 33.333 0.00 0.00 0.00 2.24
1047 1061 6.539173 ACATCATTCAAACTTACTGGTGGTA 58.461 36.000 0.00 0.00 0.00 3.25
1100 1114 1.531423 CTGTCCACAAATGCTCTGCT 58.469 50.000 0.00 0.00 0.00 4.24
1151 1165 9.262358 CCTAGAGATTAAACATTTAGCTGGTAC 57.738 37.037 0.00 0.00 0.00 3.34
1232 1248 0.391228 TGTTACAGCCGAACAGAGCA 59.609 50.000 0.00 0.00 33.03 4.26
1237 1253 2.359230 GCCGAACAGAGCAAGCCT 60.359 61.111 0.00 0.00 0.00 4.58
1279 1295 1.548719 CTCCACCGTGTATCAAGGACA 59.451 52.381 8.52 0.00 36.54 4.02
1306 1322 2.162608 CCTCTCGACTGTAACTCTGTGG 59.837 54.545 0.00 0.00 0.00 4.17
1361 1377 2.734379 GGAAGAGTCCGTACGTTGC 58.266 57.895 15.21 2.84 33.05 4.17
1362 1378 0.243095 GGAAGAGTCCGTACGTTGCT 59.757 55.000 15.21 8.76 33.05 3.91
1363 1379 1.615502 GAAGAGTCCGTACGTTGCTC 58.384 55.000 15.21 16.64 0.00 4.26
1364 1380 0.109873 AAGAGTCCGTACGTTGCTCG 60.110 55.000 15.21 0.00 46.00 5.03
1373 1389 2.504244 CGTTGCTCGTCCGTCCTC 60.504 66.667 0.00 0.00 34.52 3.71
1374 1390 2.126031 GTTGCTCGTCCGTCCTCC 60.126 66.667 0.00 0.00 0.00 4.30
1375 1391 3.379445 TTGCTCGTCCGTCCTCCC 61.379 66.667 0.00 0.00 0.00 4.30
1376 1392 4.671590 TGCTCGTCCGTCCTCCCA 62.672 66.667 0.00 0.00 0.00 4.37
1377 1393 3.148279 GCTCGTCCGTCCTCCCAT 61.148 66.667 0.00 0.00 0.00 4.00
1378 1394 3.121019 CTCGTCCGTCCTCCCATC 58.879 66.667 0.00 0.00 0.00 3.51
1379 1395 2.827190 TCGTCCGTCCTCCCATCG 60.827 66.667 0.00 0.00 0.00 3.84
1380 1396 2.827190 CGTCCGTCCTCCCATCGA 60.827 66.667 0.00 0.00 0.00 3.59
1381 1397 2.194212 CGTCCGTCCTCCCATCGAT 61.194 63.158 0.00 0.00 0.00 3.59
1382 1398 1.660917 GTCCGTCCTCCCATCGATC 59.339 63.158 0.00 0.00 0.00 3.69
1383 1399 1.897137 TCCGTCCTCCCATCGATCG 60.897 63.158 9.36 9.36 0.00 3.69
1384 1400 1.897137 CCGTCCTCCCATCGATCGA 60.897 63.158 21.86 21.86 0.00 3.59
1385 1401 1.452953 CCGTCCTCCCATCGATCGAA 61.453 60.000 23.50 4.27 0.00 3.71
1386 1402 0.384309 CGTCCTCCCATCGATCGAAA 59.616 55.000 23.50 7.26 0.00 3.46
1387 1403 1.600663 CGTCCTCCCATCGATCGAAAG 60.601 57.143 23.50 17.09 0.00 2.62
1389 1405 1.681793 TCCTCCCATCGATCGAAAGAC 59.318 52.381 23.50 0.00 46.97 3.01
1390 1406 1.409064 CCTCCCATCGATCGAAAGACA 59.591 52.381 23.50 4.51 46.97 3.41
1391 1407 2.159099 CCTCCCATCGATCGAAAGACAA 60.159 50.000 23.50 5.10 46.97 3.18
1392 1408 2.860735 CTCCCATCGATCGAAAGACAAC 59.139 50.000 23.50 0.00 46.97 3.32
1393 1409 1.933853 CCCATCGATCGAAAGACAACC 59.066 52.381 23.50 0.00 46.97 3.77
1394 1410 2.418746 CCCATCGATCGAAAGACAACCT 60.419 50.000 23.50 0.00 46.97 3.50
1395 1411 2.860735 CCATCGATCGAAAGACAACCTC 59.139 50.000 23.50 0.00 46.97 3.85
1396 1412 2.649331 TCGATCGAAAGACAACCTCC 57.351 50.000 16.99 0.00 46.97 4.30
1397 1413 1.890489 TCGATCGAAAGACAACCTCCA 59.110 47.619 16.99 0.00 46.97 3.86
1398 1414 1.993370 CGATCGAAAGACAACCTCCAC 59.007 52.381 10.26 0.00 46.97 4.02
1399 1415 2.347731 GATCGAAAGACAACCTCCACC 58.652 52.381 0.00 0.00 46.97 4.61
1400 1416 1.420430 TCGAAAGACAACCTCCACCT 58.580 50.000 0.00 0.00 33.31 4.00
1401 1417 1.343465 TCGAAAGACAACCTCCACCTC 59.657 52.381 0.00 0.00 33.31 3.85
1402 1418 1.608283 CGAAAGACAACCTCCACCTCC 60.608 57.143 0.00 0.00 0.00 4.30
1403 1419 0.771755 AAAGACAACCTCCACCTCCC 59.228 55.000 0.00 0.00 0.00 4.30
1404 1420 0.104409 AAGACAACCTCCACCTCCCT 60.104 55.000 0.00 0.00 0.00 4.20
1405 1421 0.545548 AGACAACCTCCACCTCCCTC 60.546 60.000 0.00 0.00 0.00 4.30
1406 1422 1.889530 GACAACCTCCACCTCCCTCG 61.890 65.000 0.00 0.00 0.00 4.63
1407 1423 1.913762 CAACCTCCACCTCCCTCGT 60.914 63.158 0.00 0.00 0.00 4.18
1408 1424 0.613853 CAACCTCCACCTCCCTCGTA 60.614 60.000 0.00 0.00 0.00 3.43
1409 1425 0.338814 AACCTCCACCTCCCTCGTAT 59.661 55.000 0.00 0.00 0.00 3.06
1410 1426 0.397254 ACCTCCACCTCCCTCGTATG 60.397 60.000 0.00 0.00 0.00 2.39
1411 1427 1.115930 CCTCCACCTCCCTCGTATGG 61.116 65.000 0.00 0.00 0.00 2.74
1412 1428 0.397254 CTCCACCTCCCTCGTATGGT 60.397 60.000 0.00 0.00 0.00 3.55
1413 1429 0.042131 TCCACCTCCCTCGTATGGTT 59.958 55.000 0.00 0.00 0.00 3.67
1414 1430 0.909623 CCACCTCCCTCGTATGGTTT 59.090 55.000 0.00 0.00 0.00 3.27
1415 1431 1.134491 CCACCTCCCTCGTATGGTTTC 60.134 57.143 0.00 0.00 0.00 2.78
1416 1432 1.134491 CACCTCCCTCGTATGGTTTCC 60.134 57.143 0.00 0.00 0.00 3.13
1417 1433 0.468648 CCTCCCTCGTATGGTTTCCC 59.531 60.000 0.00 0.00 0.00 3.97
1419 1435 0.906775 TCCCTCGTATGGTTTCCCAC 59.093 55.000 0.00 0.00 45.65 4.61
1420 1436 0.107361 CCCTCGTATGGTTTCCCACC 60.107 60.000 0.00 0.00 45.65 4.61
1427 1443 4.043100 GGTTTCCCACCTCCCCCG 62.043 72.222 0.00 0.00 43.29 5.73
1428 1444 3.254617 GTTTCCCACCTCCCCCGT 61.255 66.667 0.00 0.00 0.00 5.28
1429 1445 2.931649 TTTCCCACCTCCCCCGTC 60.932 66.667 0.00 0.00 0.00 4.79
1433 1449 3.081409 CCACCTCCCCCGTCGATT 61.081 66.667 0.00 0.00 0.00 3.34
1434 1450 2.666098 CCACCTCCCCCGTCGATTT 61.666 63.158 0.00 0.00 0.00 2.17
1435 1451 1.298667 CACCTCCCCCGTCGATTTT 59.701 57.895 0.00 0.00 0.00 1.82
1436 1452 0.322187 CACCTCCCCCGTCGATTTTT 60.322 55.000 0.00 0.00 0.00 1.94
1471 1487 5.447624 AAAAACGGTGGAGAAATAACCAG 57.552 39.130 0.00 0.00 36.82 4.00
1472 1488 4.360951 AAACGGTGGAGAAATAACCAGA 57.639 40.909 0.00 0.00 36.82 3.86
1473 1489 4.569719 AACGGTGGAGAAATAACCAGAT 57.430 40.909 0.00 0.00 36.82 2.90
1474 1490 5.687166 AACGGTGGAGAAATAACCAGATA 57.313 39.130 0.00 0.00 36.82 1.98
1475 1491 5.687166 ACGGTGGAGAAATAACCAGATAA 57.313 39.130 0.00 0.00 36.82 1.75
1476 1492 6.057321 ACGGTGGAGAAATAACCAGATAAA 57.943 37.500 0.00 0.00 36.82 1.40
1477 1493 6.478129 ACGGTGGAGAAATAACCAGATAAAA 58.522 36.000 0.00 0.00 36.82 1.52
1478 1494 6.373495 ACGGTGGAGAAATAACCAGATAAAAC 59.627 38.462 0.00 0.00 36.82 2.43
1479 1495 6.183360 CGGTGGAGAAATAACCAGATAAAACC 60.183 42.308 0.00 0.00 36.82 3.27
1480 1496 6.661805 GGTGGAGAAATAACCAGATAAAACCA 59.338 38.462 0.00 0.00 36.82 3.67
1481 1497 7.177744 GGTGGAGAAATAACCAGATAAAACCAA 59.822 37.037 0.00 0.00 36.82 3.67
1482 1498 8.027189 GTGGAGAAATAACCAGATAAAACCAAC 58.973 37.037 0.00 0.00 36.82 3.77
1483 1499 7.726291 TGGAGAAATAACCAGATAAAACCAACA 59.274 33.333 0.00 0.00 0.00 3.33
1484 1500 8.581578 GGAGAAATAACCAGATAAAACCAACAA 58.418 33.333 0.00 0.00 0.00 2.83
1485 1501 9.974980 GAGAAATAACCAGATAAAACCAACAAA 57.025 29.630 0.00 0.00 0.00 2.83
1491 1507 8.606040 AACCAGATAAAACCAACAAATTCATG 57.394 30.769 0.00 0.00 0.00 3.07
1492 1508 7.734942 ACCAGATAAAACCAACAAATTCATGT 58.265 30.769 0.00 0.00 34.24 3.21
1493 1509 7.872483 ACCAGATAAAACCAACAAATTCATGTC 59.128 33.333 0.00 0.00 31.81 3.06
1494 1510 7.871973 CCAGATAAAACCAACAAATTCATGTCA 59.128 33.333 0.00 0.00 31.81 3.58
1495 1511 9.426837 CAGATAAAACCAACAAATTCATGTCAT 57.573 29.630 0.00 0.00 31.81 3.06
1498 1514 7.636259 AAAACCAACAAATTCATGTCATACG 57.364 32.000 0.00 0.00 31.81 3.06
1499 1515 4.732784 ACCAACAAATTCATGTCATACGC 58.267 39.130 0.00 0.00 31.81 4.42
1500 1516 4.458989 ACCAACAAATTCATGTCATACGCT 59.541 37.500 0.00 0.00 31.81 5.07
1501 1517 4.794762 CCAACAAATTCATGTCATACGCTG 59.205 41.667 0.00 0.00 31.81 5.18
1502 1518 4.019919 ACAAATTCATGTCATACGCTGC 57.980 40.909 0.00 0.00 0.00 5.25
1503 1519 3.181497 ACAAATTCATGTCATACGCTGCC 60.181 43.478 0.00 0.00 0.00 4.85
1504 1520 2.330440 ATTCATGTCATACGCTGCCA 57.670 45.000 0.00 0.00 0.00 4.92
1505 1521 1.655484 TTCATGTCATACGCTGCCAG 58.345 50.000 0.00 0.00 0.00 4.85
1506 1522 0.811219 TCATGTCATACGCTGCCAGC 60.811 55.000 6.63 6.63 38.02 4.85
1507 1523 1.524621 ATGTCATACGCTGCCAGCC 60.525 57.895 11.83 0.00 38.18 4.85
1508 1524 2.125147 GTCATACGCTGCCAGCCA 60.125 61.111 11.83 0.00 38.18 4.75
1509 1525 1.745115 GTCATACGCTGCCAGCCAA 60.745 57.895 11.83 0.00 38.18 4.52
1510 1526 1.745115 TCATACGCTGCCAGCCAAC 60.745 57.895 11.83 0.00 38.18 3.77
1511 1527 1.746615 CATACGCTGCCAGCCAACT 60.747 57.895 11.83 0.00 38.18 3.16
1512 1528 1.002134 ATACGCTGCCAGCCAACTT 60.002 52.632 11.83 0.00 38.18 2.66
1513 1529 0.609131 ATACGCTGCCAGCCAACTTT 60.609 50.000 11.83 0.00 38.18 2.66
1514 1530 1.234615 TACGCTGCCAGCCAACTTTC 61.235 55.000 11.83 0.00 38.18 2.62
1515 1531 2.653115 GCTGCCAGCCAACTTTCC 59.347 61.111 5.06 0.00 34.48 3.13
1516 1532 1.905354 GCTGCCAGCCAACTTTCCT 60.905 57.895 5.06 0.00 34.48 3.36
1517 1533 0.609131 GCTGCCAGCCAACTTTCCTA 60.609 55.000 5.06 0.00 34.48 2.94
1518 1534 1.909700 CTGCCAGCCAACTTTCCTAA 58.090 50.000 0.00 0.00 0.00 2.69
1519 1535 2.450476 CTGCCAGCCAACTTTCCTAAT 58.550 47.619 0.00 0.00 0.00 1.73
1520 1536 2.827921 CTGCCAGCCAACTTTCCTAATT 59.172 45.455 0.00 0.00 0.00 1.40
1521 1537 4.016444 CTGCCAGCCAACTTTCCTAATTA 58.984 43.478 0.00 0.00 0.00 1.40
1522 1538 3.761752 TGCCAGCCAACTTTCCTAATTAC 59.238 43.478 0.00 0.00 0.00 1.89
1523 1539 3.130516 GCCAGCCAACTTTCCTAATTACC 59.869 47.826 0.00 0.00 0.00 2.85
1524 1540 4.340617 CCAGCCAACTTTCCTAATTACCA 58.659 43.478 0.00 0.00 0.00 3.25
1525 1541 4.956075 CCAGCCAACTTTCCTAATTACCAT 59.044 41.667 0.00 0.00 0.00 3.55
1526 1542 5.067805 CCAGCCAACTTTCCTAATTACCATC 59.932 44.000 0.00 0.00 0.00 3.51
1527 1543 5.652014 CAGCCAACTTTCCTAATTACCATCA 59.348 40.000 0.00 0.00 0.00 3.07
1528 1544 6.322201 CAGCCAACTTTCCTAATTACCATCAT 59.678 38.462 0.00 0.00 0.00 2.45
1529 1545 7.502226 CAGCCAACTTTCCTAATTACCATCATA 59.498 37.037 0.00 0.00 0.00 2.15
1530 1546 8.227507 AGCCAACTTTCCTAATTACCATCATAT 58.772 33.333 0.00 0.00 0.00 1.78
1531 1547 8.860088 GCCAACTTTCCTAATTACCATCATATT 58.140 33.333 0.00 0.00 0.00 1.28
1542 1558 8.737168 AATTACCATCATATTCATATCCCACG 57.263 34.615 0.00 0.00 0.00 4.94
1543 1559 4.517285 ACCATCATATTCATATCCCACGC 58.483 43.478 0.00 0.00 0.00 5.34
1544 1560 3.879295 CCATCATATTCATATCCCACGCC 59.121 47.826 0.00 0.00 0.00 5.68
1545 1561 4.384537 CCATCATATTCATATCCCACGCCT 60.385 45.833 0.00 0.00 0.00 5.52
1546 1562 4.471904 TCATATTCATATCCCACGCCTC 57.528 45.455 0.00 0.00 0.00 4.70
1547 1563 3.837731 TCATATTCATATCCCACGCCTCA 59.162 43.478 0.00 0.00 0.00 3.86
1548 1564 4.285775 TCATATTCATATCCCACGCCTCAA 59.714 41.667 0.00 0.00 0.00 3.02
1549 1565 3.795688 ATTCATATCCCACGCCTCAAT 57.204 42.857 0.00 0.00 0.00 2.57
1550 1566 3.576078 TTCATATCCCACGCCTCAATT 57.424 42.857 0.00 0.00 0.00 2.32
1551 1567 2.849942 TCATATCCCACGCCTCAATTG 58.150 47.619 0.00 0.00 0.00 2.32
1552 1568 2.437651 TCATATCCCACGCCTCAATTGA 59.562 45.455 8.12 8.12 0.00 2.57
1553 1569 2.620251 TATCCCACGCCTCAATTGAG 57.380 50.000 25.75 25.75 41.71 3.02
1564 1580 2.449464 CTCAATTGAGGTTGCCATCCA 58.551 47.619 25.14 0.00 38.48 3.41
1565 1581 2.827322 CTCAATTGAGGTTGCCATCCAA 59.173 45.455 25.14 0.00 38.48 3.53
1578 1594 6.524101 TTGCCATCCAACTTTCCTAATTAC 57.476 37.500 0.00 0.00 0.00 1.89
1579 1595 4.953579 TGCCATCCAACTTTCCTAATTACC 59.046 41.667 0.00 0.00 0.00 2.85
1580 1596 4.953579 GCCATCCAACTTTCCTAATTACCA 59.046 41.667 0.00 0.00 0.00 3.25
1581 1597 5.420739 GCCATCCAACTTTCCTAATTACCAA 59.579 40.000 0.00 0.00 0.00 3.67
1582 1598 6.098266 GCCATCCAACTTTCCTAATTACCAAT 59.902 38.462 0.00 0.00 0.00 3.16
1583 1599 7.684428 GCCATCCAACTTTCCTAATTACCAATC 60.684 40.741 0.00 0.00 0.00 2.67
1584 1600 7.561356 CCATCCAACTTTCCTAATTACCAATCT 59.439 37.037 0.00 0.00 0.00 2.40
1585 1601 8.971073 CATCCAACTTTCCTAATTACCAATCTT 58.029 33.333 0.00 0.00 0.00 2.40
1586 1602 8.950007 TCCAACTTTCCTAATTACCAATCTTT 57.050 30.769 0.00 0.00 0.00 2.52
1587 1603 9.020731 TCCAACTTTCCTAATTACCAATCTTTC 57.979 33.333 0.00 0.00 0.00 2.62
1588 1604 8.251026 CCAACTTTCCTAATTACCAATCTTTCC 58.749 37.037 0.00 0.00 0.00 3.13
1589 1605 8.802267 CAACTTTCCTAATTACCAATCTTTCCA 58.198 33.333 0.00 0.00 0.00 3.53
1590 1606 9.547279 AACTTTCCTAATTACCAATCTTTCCAT 57.453 29.630 0.00 0.00 0.00 3.41
1593 1609 8.990163 TTCCTAATTACCAATCTTTCCATACC 57.010 34.615 0.00 0.00 0.00 2.73
1594 1610 8.108378 TCCTAATTACCAATCTTTCCATACCA 57.892 34.615 0.00 0.00 0.00 3.25
1595 1611 8.732854 TCCTAATTACCAATCTTTCCATACCAT 58.267 33.333 0.00 0.00 0.00 3.55
1600 1616 9.799106 ATTACCAATCTTTCCATACCATAGAAG 57.201 33.333 0.00 0.00 0.00 2.85
1601 1617 7.451731 ACCAATCTTTCCATACCATAGAAGA 57.548 36.000 0.00 0.00 0.00 2.87
1602 1618 7.872138 ACCAATCTTTCCATACCATAGAAGAA 58.128 34.615 0.00 0.00 0.00 2.52
1603 1619 8.336235 ACCAATCTTTCCATACCATAGAAGAAA 58.664 33.333 0.00 0.00 0.00 2.52
1604 1620 9.189156 CCAATCTTTCCATACCATAGAAGAAAA 57.811 33.333 0.00 0.00 0.00 2.29
1606 1622 7.843490 TCTTTCCATACCATAGAAGAAAACG 57.157 36.000 0.00 0.00 0.00 3.60
1607 1623 7.391620 TCTTTCCATACCATAGAAGAAAACGT 58.608 34.615 0.00 0.00 0.00 3.99
1608 1624 7.881232 TCTTTCCATACCATAGAAGAAAACGTT 59.119 33.333 0.00 0.00 0.00 3.99
1609 1625 7.989416 TTCCATACCATAGAAGAAAACGTTT 57.011 32.000 7.96 7.96 0.00 3.60
1610 1626 7.989416 TCCATACCATAGAAGAAAACGTTTT 57.011 32.000 25.46 25.46 0.00 2.43
1611 1627 8.036273 TCCATACCATAGAAGAAAACGTTTTC 57.964 34.615 35.52 35.52 45.22 2.29
1621 1637 4.499037 GAAAACGTTTTCTACCATGGCT 57.501 40.909 35.26 9.49 42.42 4.75
1622 1638 3.915437 AAACGTTTTCTACCATGGCTG 57.085 42.857 13.04 4.79 0.00 4.85
1623 1639 1.165270 ACGTTTTCTACCATGGCTGC 58.835 50.000 13.04 0.00 0.00 5.25
1624 1640 1.271379 ACGTTTTCTACCATGGCTGCT 60.271 47.619 13.04 0.00 0.00 4.24
1625 1641 2.027561 ACGTTTTCTACCATGGCTGCTA 60.028 45.455 13.04 0.00 0.00 3.49
1626 1642 2.351726 CGTTTTCTACCATGGCTGCTAC 59.648 50.000 13.04 2.55 0.00 3.58
1627 1643 2.683362 GTTTTCTACCATGGCTGCTACC 59.317 50.000 13.04 0.00 0.00 3.18
1628 1644 1.578897 TTCTACCATGGCTGCTACCA 58.421 50.000 13.04 0.55 45.82 3.25
1629 1645 0.830648 TCTACCATGGCTGCTACCAC 59.169 55.000 13.04 0.00 44.17 4.16
1630 1646 0.530650 CTACCATGGCTGCTACCACG 60.531 60.000 13.04 0.00 44.17 4.94
1631 1647 0.973496 TACCATGGCTGCTACCACGA 60.973 55.000 13.04 0.00 44.17 4.35
1632 1648 1.815421 CCATGGCTGCTACCACGAC 60.815 63.158 0.00 0.00 44.17 4.34
1633 1649 1.079197 CATGGCTGCTACCACGACA 60.079 57.895 0.00 0.00 44.17 4.35
1634 1650 0.462581 CATGGCTGCTACCACGACAT 60.463 55.000 0.00 0.00 44.17 3.06
1635 1651 0.179073 ATGGCTGCTACCACGACATC 60.179 55.000 0.00 0.00 44.17 3.06
1636 1652 1.218047 GGCTGCTACCACGACATCA 59.782 57.895 0.00 0.00 0.00 3.07
1637 1653 0.391130 GGCTGCTACCACGACATCAA 60.391 55.000 0.00 0.00 0.00 2.57
1638 1654 1.656652 GCTGCTACCACGACATCAAT 58.343 50.000 0.00 0.00 0.00 2.57
1639 1655 1.594862 GCTGCTACCACGACATCAATC 59.405 52.381 0.00 0.00 0.00 2.67
1640 1656 2.739932 GCTGCTACCACGACATCAATCT 60.740 50.000 0.00 0.00 0.00 2.40
1641 1657 3.525537 CTGCTACCACGACATCAATCTT 58.474 45.455 0.00 0.00 0.00 2.40
1642 1658 3.935203 CTGCTACCACGACATCAATCTTT 59.065 43.478 0.00 0.00 0.00 2.52
1643 1659 5.079689 TGCTACCACGACATCAATCTTTA 57.920 39.130 0.00 0.00 0.00 1.85
1644 1660 5.670485 TGCTACCACGACATCAATCTTTAT 58.330 37.500 0.00 0.00 0.00 1.40
1645 1661 6.112734 TGCTACCACGACATCAATCTTTATT 58.887 36.000 0.00 0.00 0.00 1.40
1646 1662 6.257849 TGCTACCACGACATCAATCTTTATTC 59.742 38.462 0.00 0.00 0.00 1.75
1647 1663 6.292919 GCTACCACGACATCAATCTTTATTCC 60.293 42.308 0.00 0.00 0.00 3.01
1648 1664 5.496556 ACCACGACATCAATCTTTATTCCA 58.503 37.500 0.00 0.00 0.00 3.53
1649 1665 5.354234 ACCACGACATCAATCTTTATTCCAC 59.646 40.000 0.00 0.00 0.00 4.02
1650 1666 5.353956 CCACGACATCAATCTTTATTCCACA 59.646 40.000 0.00 0.00 0.00 4.17
1651 1667 6.128035 CCACGACATCAATCTTTATTCCACAA 60.128 38.462 0.00 0.00 0.00 3.33
1652 1668 7.415541 CCACGACATCAATCTTTATTCCACAAT 60.416 37.037 0.00 0.00 0.00 2.71
1653 1669 7.641411 CACGACATCAATCTTTATTCCACAATC 59.359 37.037 0.00 0.00 0.00 2.67
1654 1670 6.847792 CGACATCAATCTTTATTCCACAATCG 59.152 38.462 0.00 0.00 0.00 3.34
1655 1671 7.465916 CGACATCAATCTTTATTCCACAATCGT 60.466 37.037 0.00 0.00 0.00 3.73
1656 1672 7.475015 ACATCAATCTTTATTCCACAATCGTG 58.525 34.615 0.00 0.00 43.21 4.35
1664 1680 4.124910 CACAATCGTGGCCGCTAT 57.875 55.556 15.69 6.04 39.64 2.97
1665 1681 2.393557 CACAATCGTGGCCGCTATT 58.606 52.632 15.69 12.71 39.64 1.73
1666 1682 0.304705 CACAATCGTGGCCGCTATTC 59.695 55.000 15.69 0.00 39.64 1.75
1667 1683 0.107897 ACAATCGTGGCCGCTATTCA 60.108 50.000 15.69 0.00 0.00 2.57
1668 1684 1.013596 CAATCGTGGCCGCTATTCAA 58.986 50.000 15.69 0.00 0.00 2.69
1669 1685 1.003545 CAATCGTGGCCGCTATTCAAG 60.004 52.381 15.69 0.00 0.00 3.02
1670 1686 0.532862 ATCGTGGCCGCTATTCAAGG 60.533 55.000 15.69 0.00 0.00 3.61
1671 1687 1.153449 CGTGGCCGCTATTCAAGGA 60.153 57.895 15.69 0.00 0.00 3.36
1672 1688 0.742990 CGTGGCCGCTATTCAAGGAA 60.743 55.000 15.69 0.00 0.00 3.36
1673 1689 1.459450 GTGGCCGCTATTCAAGGAAA 58.541 50.000 9.68 0.00 0.00 3.13
1674 1690 1.816224 GTGGCCGCTATTCAAGGAAAA 59.184 47.619 9.68 0.00 0.00 2.29
1675 1691 1.816224 TGGCCGCTATTCAAGGAAAAC 59.184 47.619 0.00 0.00 0.00 2.43
1676 1692 2.092323 GGCCGCTATTCAAGGAAAACT 58.908 47.619 0.00 0.00 0.00 2.66
1677 1693 3.275999 GGCCGCTATTCAAGGAAAACTA 58.724 45.455 0.00 0.00 0.00 2.24
1678 1694 3.692593 GGCCGCTATTCAAGGAAAACTAA 59.307 43.478 0.00 0.00 0.00 2.24
1679 1695 4.338400 GGCCGCTATTCAAGGAAAACTAAT 59.662 41.667 0.00 0.00 0.00 1.73
1680 1696 5.163550 GGCCGCTATTCAAGGAAAACTAATT 60.164 40.000 0.00 0.00 0.00 1.40
1681 1697 6.038936 GGCCGCTATTCAAGGAAAACTAATTA 59.961 38.462 0.00 0.00 0.00 1.40
1682 1698 7.415877 GGCCGCTATTCAAGGAAAACTAATTAA 60.416 37.037 0.00 0.00 0.00 1.40
1683 1699 8.135529 GCCGCTATTCAAGGAAAACTAATTAAT 58.864 33.333 0.00 0.00 0.00 1.40
1684 1700 9.450807 CCGCTATTCAAGGAAAACTAATTAATG 57.549 33.333 0.00 0.00 0.00 1.90
1685 1701 8.958043 CGCTATTCAAGGAAAACTAATTAATGC 58.042 33.333 0.00 0.00 0.00 3.56
1686 1702 9.249457 GCTATTCAAGGAAAACTAATTAATGCC 57.751 33.333 0.00 0.00 0.00 4.40
1689 1705 9.875691 ATTCAAGGAAAACTAATTAATGCCTTC 57.124 29.630 0.00 0.00 32.54 3.46
1690 1706 8.415950 TCAAGGAAAACTAATTAATGCCTTCA 57.584 30.769 0.00 0.00 32.54 3.02
1691 1707 9.034800 TCAAGGAAAACTAATTAATGCCTTCAT 57.965 29.630 0.00 0.00 32.54 2.57
1694 1710 9.474313 AGGAAAACTAATTAATGCCTTCATACA 57.526 29.630 0.00 0.00 31.46 2.29
1698 1714 9.855021 AAACTAATTAATGCCTTCATACAACAC 57.145 29.630 0.00 0.00 31.46 3.32
1699 1715 7.996385 ACTAATTAATGCCTTCATACAACACC 58.004 34.615 0.00 0.00 31.46 4.16
1700 1716 6.849085 AATTAATGCCTTCATACAACACCA 57.151 33.333 0.00 0.00 31.46 4.17
1701 1717 6.849085 ATTAATGCCTTCATACAACACCAA 57.151 33.333 0.00 0.00 31.46 3.67
1702 1718 6.849085 TTAATGCCTTCATACAACACCAAT 57.151 33.333 0.00 0.00 31.46 3.16
1703 1719 4.989279 ATGCCTTCATACAACACCAATC 57.011 40.909 0.00 0.00 0.00 2.67
1784 1800 7.201609 GCGAACATCCATAAGTTCATAACAAGA 60.202 37.037 0.00 0.00 43.20 3.02
1821 1838 4.993705 AACCAGGGTCATAGACAGAAAA 57.006 40.909 0.00 0.00 33.68 2.29
1830 1849 6.373495 GGGTCATAGACAGAAAATTAAACGGT 59.627 38.462 0.00 0.00 33.68 4.83
1869 1888 2.184020 AATACTCAGCGCACAGGCCA 62.184 55.000 11.47 0.00 36.38 5.36
1947 1970 3.698539 CTCTTGTCTGCAGAGGATAGACA 59.301 47.826 18.89 7.70 46.42 3.41
1949 1972 3.093057 TGTCTGCAGAGGATAGACACT 57.907 47.619 18.89 0.00 44.10 3.55
1996 2019 4.379243 CAGCGCCTCCTGGTCGTT 62.379 66.667 2.29 0.00 36.03 3.85
2023 2046 6.115446 CCTTAGTCAATGATTTCCACTGCTA 58.885 40.000 0.00 0.00 0.00 3.49
2050 2073 5.244626 AGAAGGCACATGATTTAAACAAGCT 59.755 36.000 0.00 0.00 0.00 3.74
2066 2089 3.239861 GCTGTCAGCAGGTTTAGCT 57.760 52.632 20.16 0.00 41.89 3.32
2150 2173 1.976474 GCCCACCCAAAAGATGCGA 60.976 57.895 0.00 0.00 0.00 5.10
2162 2185 1.418334 AGATGCGACTATTGAGGCCT 58.582 50.000 3.86 3.86 0.00 5.19
2166 2189 0.872021 GCGACTATTGAGGCCTGACG 60.872 60.000 12.00 8.96 0.00 4.35
2213 2236 0.915364 AGAAAGAGGCAGGATCCCAC 59.085 55.000 8.55 0.00 0.00 4.61
2219 2242 2.045926 GCAGGATCCCACGCAACT 60.046 61.111 8.55 0.00 0.00 3.16
2224 2247 1.004745 AGGATCCCACGCAACTTGAAT 59.995 47.619 8.55 0.00 0.00 2.57
2250 2273 4.081420 ACTCTCTGACGCAACTCCAAATAT 60.081 41.667 0.00 0.00 0.00 1.28
2251 2274 4.183865 TCTCTGACGCAACTCCAAATATG 58.816 43.478 0.00 0.00 0.00 1.78
2252 2275 4.081697 TCTCTGACGCAACTCCAAATATGA 60.082 41.667 0.00 0.00 0.00 2.15
2253 2276 4.769688 TCTGACGCAACTCCAAATATGAT 58.230 39.130 0.00 0.00 0.00 2.45
2254 2277 5.185454 TCTGACGCAACTCCAAATATGATT 58.815 37.500 0.00 0.00 0.00 2.57
2255 2278 5.294306 TCTGACGCAACTCCAAATATGATTC 59.706 40.000 0.00 0.00 0.00 2.52
2256 2279 4.033932 TGACGCAACTCCAAATATGATTCG 59.966 41.667 0.00 0.00 0.00 3.34
2257 2280 3.938963 ACGCAACTCCAAATATGATTCGT 59.061 39.130 0.00 0.00 0.00 3.85
2258 2281 5.113383 ACGCAACTCCAAATATGATTCGTA 58.887 37.500 0.00 0.00 0.00 3.43
2259 2282 5.758296 ACGCAACTCCAAATATGATTCGTAT 59.242 36.000 0.00 0.00 0.00 3.06
2260 2283 6.073765 ACGCAACTCCAAATATGATTCGTATC 60.074 38.462 0.00 0.00 0.00 2.24
2261 2284 6.603095 GCAACTCCAAATATGATTCGTATCC 58.397 40.000 0.00 0.00 0.00 2.59
2262 2285 6.428159 GCAACTCCAAATATGATTCGTATCCT 59.572 38.462 0.00 0.00 0.00 3.24
2263 2286 7.360438 GCAACTCCAAATATGATTCGTATCCTC 60.360 40.741 0.00 0.00 0.00 3.71
2264 2287 6.702329 ACTCCAAATATGATTCGTATCCTCC 58.298 40.000 0.00 0.00 0.00 4.30
2265 2288 6.270000 ACTCCAAATATGATTCGTATCCTCCA 59.730 38.462 0.00 0.00 0.00 3.86
2266 2289 7.073457 TCCAAATATGATTCGTATCCTCCAA 57.927 36.000 0.00 0.00 0.00 3.53
2267 2290 7.161404 TCCAAATATGATTCGTATCCTCCAAG 58.839 38.462 0.00 0.00 0.00 3.61
2268 2291 6.372659 CCAAATATGATTCGTATCCTCCAAGG 59.627 42.308 0.00 0.00 36.46 3.61
2269 2292 2.910688 TGATTCGTATCCTCCAAGGC 57.089 50.000 0.00 0.00 34.61 4.35
2270 2293 2.115427 TGATTCGTATCCTCCAAGGCA 58.885 47.619 0.00 0.00 34.61 4.75
2271 2294 2.158957 TGATTCGTATCCTCCAAGGCAC 60.159 50.000 0.00 0.00 34.61 5.01
2272 2295 0.539986 TTCGTATCCTCCAAGGCACC 59.460 55.000 0.00 0.00 34.61 5.01
2273 2296 0.616395 TCGTATCCTCCAAGGCACCA 60.616 55.000 0.00 0.00 34.61 4.17
2274 2297 0.462047 CGTATCCTCCAAGGCACCAC 60.462 60.000 0.00 0.00 34.61 4.16
2275 2298 0.618458 GTATCCTCCAAGGCACCACA 59.382 55.000 0.00 0.00 34.61 4.17
2276 2299 1.212935 GTATCCTCCAAGGCACCACAT 59.787 52.381 0.00 0.00 34.61 3.21
2277 2300 1.595311 ATCCTCCAAGGCACCACATA 58.405 50.000 0.00 0.00 34.61 2.29
2278 2301 0.911769 TCCTCCAAGGCACCACATAG 59.088 55.000 0.00 0.00 34.61 2.23
2279 2302 0.620556 CCTCCAAGGCACCACATAGT 59.379 55.000 0.00 0.00 0.00 2.12
2280 2303 1.679944 CCTCCAAGGCACCACATAGTG 60.680 57.143 0.00 0.00 40.88 2.74
2281 2304 1.278985 CTCCAAGGCACCACATAGTGA 59.721 52.381 0.00 0.00 40.34 3.41
2282 2305 1.278985 TCCAAGGCACCACATAGTGAG 59.721 52.381 0.00 0.00 40.34 3.51
2283 2306 1.089920 CAAGGCACCACATAGTGAGC 58.910 55.000 0.00 2.75 40.34 4.26
2284 2307 0.692476 AAGGCACCACATAGTGAGCA 59.308 50.000 13.56 0.00 40.34 4.26
2285 2308 0.692476 AGGCACCACATAGTGAGCAA 59.308 50.000 13.56 0.00 40.34 3.91
2286 2309 1.089920 GGCACCACATAGTGAGCAAG 58.910 55.000 13.56 0.00 40.34 4.01
2287 2310 1.089920 GCACCACATAGTGAGCAAGG 58.910 55.000 0.00 0.00 40.34 3.61
2288 2311 1.611673 GCACCACATAGTGAGCAAGGT 60.612 52.381 0.00 0.00 40.34 3.50
2289 2312 2.783135 CACCACATAGTGAGCAAGGTT 58.217 47.619 0.00 0.00 40.34 3.50
2290 2313 2.485426 CACCACATAGTGAGCAAGGTTG 59.515 50.000 0.00 0.00 40.34 3.77
2291 2314 2.371841 ACCACATAGTGAGCAAGGTTGA 59.628 45.455 0.00 0.00 35.23 3.18
2292 2315 3.005554 CCACATAGTGAGCAAGGTTGAG 58.994 50.000 0.00 0.00 35.23 3.02
2293 2316 3.306989 CCACATAGTGAGCAAGGTTGAGA 60.307 47.826 0.00 0.00 35.23 3.27
2294 2317 3.681897 CACATAGTGAGCAAGGTTGAGAC 59.318 47.826 0.00 0.00 35.23 3.36
2295 2318 3.265791 CATAGTGAGCAAGGTTGAGACC 58.734 50.000 0.00 0.00 46.92 3.85
2304 2327 3.728373 GTTGAGACCCCGGGCCAT 61.728 66.667 17.73 1.33 0.00 4.40
2305 2328 2.938798 TTGAGACCCCGGGCCATT 60.939 61.111 17.73 0.00 0.00 3.16
2306 2329 2.978946 TTGAGACCCCGGGCCATTC 61.979 63.158 17.73 10.25 0.00 2.67
2307 2330 4.191015 GAGACCCCGGGCCATTCC 62.191 72.222 17.73 0.00 0.00 3.01
2308 2331 4.760220 AGACCCCGGGCCATTCCT 62.760 66.667 17.73 1.57 34.39 3.36
2309 2332 4.191015 GACCCCGGGCCATTCCTC 62.191 72.222 17.73 0.00 34.39 3.71
2310 2333 4.760220 ACCCCGGGCCATTCCTCT 62.760 66.667 17.73 0.00 34.39 3.69
2311 2334 3.420482 CCCCGGGCCATTCCTCTT 61.420 66.667 17.73 0.00 34.39 2.85
2312 2335 2.076184 CCCCGGGCCATTCCTCTTA 61.076 63.158 17.73 0.00 34.39 2.10
2313 2336 1.148498 CCCGGGCCATTCCTCTTAC 59.852 63.158 8.08 0.00 34.39 2.34
2314 2337 1.227556 CCGGGCCATTCCTCTTACG 60.228 63.158 4.39 0.00 34.39 3.18
2315 2338 1.682451 CCGGGCCATTCCTCTTACGA 61.682 60.000 4.39 0.00 34.39 3.43
2316 2339 0.177141 CGGGCCATTCCTCTTACGAA 59.823 55.000 4.39 0.00 34.39 3.85
2317 2340 1.202651 CGGGCCATTCCTCTTACGAAT 60.203 52.381 4.39 0.00 34.39 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.023673 GATGGGGCAAAATGACGATGA 58.976 47.619 0.00 0.00 0.00 2.92
12 13 1.574526 CCTTTGGGAGAGATGGGGCA 61.575 60.000 0.00 0.00 33.58 5.36
83 85 1.676635 ACGAAGACGATCCACCCGA 60.677 57.895 0.00 0.00 42.66 5.14
108 110 1.249407 GTACGTCCATGGGCCAAAAA 58.751 50.000 11.89 0.00 0.00 1.94
216 218 3.073678 TGTGGCTAGTTTGTATGCACTG 58.926 45.455 0.00 0.00 0.00 3.66
406 409 0.613260 ACTGAGCGAGTGGCCAAATA 59.387 50.000 7.24 0.00 45.17 1.40
417 420 1.889170 CAGATAGGGCATACTGAGCGA 59.111 52.381 0.00 0.00 32.90 4.93
466 469 0.837691 TGAGTGCAGGTGATCCAGGT 60.838 55.000 0.00 0.00 35.89 4.00
470 473 1.364626 CGCTTGAGTGCAGGTGATCC 61.365 60.000 0.00 0.00 33.88 3.36
508 511 1.123077 AGAGGCCATCTCATACGCAA 58.877 50.000 5.01 0.00 44.81 4.85
555 559 0.954452 GCATTAGCCATTCCTTCCCG 59.046 55.000 0.00 0.00 33.58 5.14
587 591 2.897326 TCTCGGACCATCTTTGAACAGA 59.103 45.455 0.00 0.00 0.00 3.41
595 599 1.573108 ACCATGTCTCGGACCATCTT 58.427 50.000 0.00 0.00 0.00 2.40
674 678 1.380246 GATGCAGGCATGGGTGGAA 60.380 57.895 12.12 0.00 36.70 3.53
744 748 7.164122 TGCCTTTGATAATATCCTTAGCTGAG 58.836 38.462 0.00 0.00 0.00 3.35
781 785 1.922821 GTGTCACCCCCTATGGCAT 59.077 57.895 4.88 4.88 33.49 4.40
798 802 1.472480 GGCATAGTCATGTTTTGGCGT 59.528 47.619 0.00 0.00 34.17 5.68
833 843 0.757935 GACCACCGTATCCCTAGCCA 60.758 60.000 0.00 0.00 0.00 4.75
851 861 3.806591 GAACCATCGACGAACAGGA 57.193 52.632 17.76 0.00 0.00 3.86
900 910 1.375326 GTCCCAGAGAACACACCCC 59.625 63.158 0.00 0.00 0.00 4.95
941 951 7.450944 TGCAATGGAAAATATATCTGTATGCCA 59.549 33.333 0.00 0.00 0.00 4.92
1029 1043 5.133941 TGCAATACCACCAGTAAGTTTGAA 58.866 37.500 0.00 0.00 33.70 2.69
1040 1054 2.727123 ATCCGATTGCAATACCACCA 57.273 45.000 12.97 0.00 0.00 4.17
1047 1061 1.215173 TCCAGGGAATCCGATTGCAAT 59.785 47.619 12.83 12.83 38.33 3.56
1100 1114 0.108186 CTGACCATAAGCTGACCGCA 60.108 55.000 0.00 0.00 42.61 5.69
1151 1165 6.110411 TCTTTTGAGGTACAAACTCCCTAG 57.890 41.667 0.00 0.00 46.32 3.02
1237 1253 1.074405 AGAATGGAGCCAAACAGCAGA 59.926 47.619 0.00 0.00 34.23 4.26
1279 1295 1.204941 GTTACAGTCGAGAGGCCACAT 59.795 52.381 5.01 0.00 35.23 3.21
1306 1322 5.637810 GGTAAAGGGAGTTTTATTGCAAAGC 59.362 40.000 1.71 0.00 0.00 3.51
1347 1363 4.053067 CGAGCAACGTACGGACTC 57.947 61.111 21.06 19.68 37.22 3.36
1357 1373 2.126031 GGAGGACGGACGAGCAAC 60.126 66.667 0.00 0.00 0.00 4.17
1358 1374 3.379445 GGGAGGACGGACGAGCAA 61.379 66.667 0.00 0.00 0.00 3.91
1359 1375 3.957435 ATGGGAGGACGGACGAGCA 62.957 63.158 0.00 0.00 0.00 4.26
1360 1376 3.140225 GATGGGAGGACGGACGAGC 62.140 68.421 0.00 0.00 0.00 5.03
1361 1377 2.835705 CGATGGGAGGACGGACGAG 61.836 68.421 0.00 0.00 0.00 4.18
1362 1378 2.619941 ATCGATGGGAGGACGGACGA 62.620 60.000 0.00 0.00 0.00 4.20
1363 1379 2.131294 GATCGATGGGAGGACGGACG 62.131 65.000 0.54 0.00 0.00 4.79
1364 1380 1.660917 GATCGATGGGAGGACGGAC 59.339 63.158 0.54 0.00 0.00 4.79
1365 1381 1.897137 CGATCGATGGGAGGACGGA 60.897 63.158 10.26 0.00 0.00 4.69
1366 1382 1.452953 TTCGATCGATGGGAGGACGG 61.453 60.000 20.18 0.00 0.00 4.79
1367 1383 0.384309 TTTCGATCGATGGGAGGACG 59.616 55.000 20.18 0.00 0.00 4.79
1368 1384 1.681793 TCTTTCGATCGATGGGAGGAC 59.318 52.381 20.18 0.00 0.00 3.85
1369 1385 1.681793 GTCTTTCGATCGATGGGAGGA 59.318 52.381 20.18 6.95 0.00 3.71
1370 1386 1.409064 TGTCTTTCGATCGATGGGAGG 59.591 52.381 20.18 4.38 0.00 4.30
1371 1387 2.860735 GTTGTCTTTCGATCGATGGGAG 59.139 50.000 20.18 14.08 0.00 4.30
1372 1388 2.418197 GGTTGTCTTTCGATCGATGGGA 60.418 50.000 20.18 13.95 0.00 4.37
1373 1389 1.933853 GGTTGTCTTTCGATCGATGGG 59.066 52.381 20.18 11.86 0.00 4.00
1374 1390 2.860735 GAGGTTGTCTTTCGATCGATGG 59.139 50.000 20.18 14.35 0.00 3.51
1375 1391 2.860735 GGAGGTTGTCTTTCGATCGATG 59.139 50.000 20.18 14.78 0.00 3.84
1376 1392 2.496070 TGGAGGTTGTCTTTCGATCGAT 59.504 45.455 20.18 0.00 0.00 3.59
1377 1393 1.890489 TGGAGGTTGTCTTTCGATCGA 59.110 47.619 15.15 15.15 0.00 3.59
1378 1394 1.993370 GTGGAGGTTGTCTTTCGATCG 59.007 52.381 9.36 9.36 0.00 3.69
1379 1395 2.028020 AGGTGGAGGTTGTCTTTCGATC 60.028 50.000 0.00 0.00 0.00 3.69
1380 1396 1.978580 AGGTGGAGGTTGTCTTTCGAT 59.021 47.619 0.00 0.00 0.00 3.59
1381 1397 1.343465 GAGGTGGAGGTTGTCTTTCGA 59.657 52.381 0.00 0.00 0.00 3.71
1382 1398 1.608283 GGAGGTGGAGGTTGTCTTTCG 60.608 57.143 0.00 0.00 0.00 3.46
1383 1399 1.271434 GGGAGGTGGAGGTTGTCTTTC 60.271 57.143 0.00 0.00 0.00 2.62
1384 1400 0.771755 GGGAGGTGGAGGTTGTCTTT 59.228 55.000 0.00 0.00 0.00 2.52
1385 1401 0.104409 AGGGAGGTGGAGGTTGTCTT 60.104 55.000 0.00 0.00 0.00 3.01
1386 1402 0.545548 GAGGGAGGTGGAGGTTGTCT 60.546 60.000 0.00 0.00 0.00 3.41
1387 1403 1.889530 CGAGGGAGGTGGAGGTTGTC 61.890 65.000 0.00 0.00 0.00 3.18
1388 1404 1.913762 CGAGGGAGGTGGAGGTTGT 60.914 63.158 0.00 0.00 0.00 3.32
1389 1405 0.613853 TACGAGGGAGGTGGAGGTTG 60.614 60.000 0.00 0.00 0.00 3.77
1390 1406 0.338814 ATACGAGGGAGGTGGAGGTT 59.661 55.000 0.00 0.00 0.00 3.50
1391 1407 0.397254 CATACGAGGGAGGTGGAGGT 60.397 60.000 0.00 0.00 0.00 3.85
1392 1408 1.115930 CCATACGAGGGAGGTGGAGG 61.116 65.000 0.00 0.00 31.59 4.30
1393 1409 0.397254 ACCATACGAGGGAGGTGGAG 60.397 60.000 0.00 0.00 34.13 3.86
1394 1410 0.042131 AACCATACGAGGGAGGTGGA 59.958 55.000 0.00 0.00 33.93 4.02
1395 1411 0.909623 AAACCATACGAGGGAGGTGG 59.090 55.000 0.00 0.00 33.93 4.61
1396 1412 1.134491 GGAAACCATACGAGGGAGGTG 60.134 57.143 0.00 0.00 33.93 4.00
1397 1413 1.201424 GGAAACCATACGAGGGAGGT 58.799 55.000 0.00 0.00 35.47 3.85
1411 1427 3.254617 ACGGGGGAGGTGGGAAAC 61.255 66.667 0.00 0.00 0.00 2.78
1412 1428 2.931649 GACGGGGGAGGTGGGAAA 60.932 66.667 0.00 0.00 0.00 3.13
1416 1432 2.193087 AAAATCGACGGGGGAGGTGG 62.193 60.000 0.00 0.00 0.00 4.61
1417 1433 0.322187 AAAAATCGACGGGGGAGGTG 60.322 55.000 0.00 0.00 0.00 4.00
1418 1434 2.072366 AAAAATCGACGGGGGAGGT 58.928 52.632 0.00 0.00 0.00 3.85
1449 1465 5.134661 TCTGGTTATTTCTCCACCGTTTTT 58.865 37.500 0.00 0.00 32.71 1.94
1450 1466 4.721132 TCTGGTTATTTCTCCACCGTTTT 58.279 39.130 0.00 0.00 32.71 2.43
1451 1467 4.360951 TCTGGTTATTTCTCCACCGTTT 57.639 40.909 0.00 0.00 32.71 3.60
1452 1468 4.569719 ATCTGGTTATTTCTCCACCGTT 57.430 40.909 0.00 0.00 32.71 4.44
1453 1469 5.687166 TTATCTGGTTATTTCTCCACCGT 57.313 39.130 0.00 0.00 32.71 4.83
1454 1470 6.183360 GGTTTTATCTGGTTATTTCTCCACCG 60.183 42.308 0.00 0.00 32.71 4.94
1455 1471 6.661805 TGGTTTTATCTGGTTATTTCTCCACC 59.338 38.462 0.00 0.00 0.00 4.61
1456 1472 7.696992 TGGTTTTATCTGGTTATTTCTCCAC 57.303 36.000 0.00 0.00 0.00 4.02
1457 1473 7.726291 TGTTGGTTTTATCTGGTTATTTCTCCA 59.274 33.333 0.00 0.00 0.00 3.86
1458 1474 8.117813 TGTTGGTTTTATCTGGTTATTTCTCC 57.882 34.615 0.00 0.00 0.00 3.71
1459 1475 9.974980 TTTGTTGGTTTTATCTGGTTATTTCTC 57.025 29.630 0.00 0.00 0.00 2.87
1465 1481 9.703892 CATGAATTTGTTGGTTTTATCTGGTTA 57.296 29.630 0.00 0.00 0.00 2.85
1466 1482 8.210265 ACATGAATTTGTTGGTTTTATCTGGTT 58.790 29.630 0.00 0.00 0.00 3.67
1467 1483 7.734942 ACATGAATTTGTTGGTTTTATCTGGT 58.265 30.769 0.00 0.00 0.00 4.00
1468 1484 7.871973 TGACATGAATTTGTTGGTTTTATCTGG 59.128 33.333 0.00 0.00 0.00 3.86
1469 1485 8.815141 TGACATGAATTTGTTGGTTTTATCTG 57.185 30.769 0.00 0.00 0.00 2.90
1472 1488 9.352784 CGTATGACATGAATTTGTTGGTTTTAT 57.647 29.630 0.00 0.00 0.00 1.40
1473 1489 7.327275 GCGTATGACATGAATTTGTTGGTTTTA 59.673 33.333 0.00 0.00 0.00 1.52
1474 1490 6.145371 GCGTATGACATGAATTTGTTGGTTTT 59.855 34.615 0.00 0.00 0.00 2.43
1475 1491 5.633182 GCGTATGACATGAATTTGTTGGTTT 59.367 36.000 0.00 0.00 0.00 3.27
1476 1492 5.048083 AGCGTATGACATGAATTTGTTGGTT 60.048 36.000 0.00 0.00 0.00 3.67
1477 1493 4.458989 AGCGTATGACATGAATTTGTTGGT 59.541 37.500 0.00 0.00 0.00 3.67
1478 1494 4.794762 CAGCGTATGACATGAATTTGTTGG 59.205 41.667 0.00 0.00 0.00 3.77
1479 1495 4.263677 GCAGCGTATGACATGAATTTGTTG 59.736 41.667 0.00 0.00 0.00 3.33
1480 1496 4.414852 GCAGCGTATGACATGAATTTGTT 58.585 39.130 0.00 0.00 0.00 2.83
1481 1497 3.181497 GGCAGCGTATGACATGAATTTGT 60.181 43.478 0.00 0.00 36.67 2.83
1482 1498 3.181498 TGGCAGCGTATGACATGAATTTG 60.181 43.478 0.00 0.00 44.15 2.32
1483 1499 3.016031 TGGCAGCGTATGACATGAATTT 58.984 40.909 0.00 0.00 44.15 1.82
1484 1500 2.642427 TGGCAGCGTATGACATGAATT 58.358 42.857 0.00 0.00 44.15 2.17
1485 1501 2.330440 TGGCAGCGTATGACATGAAT 57.670 45.000 0.00 0.00 44.15 2.57
1486 1502 3.851051 TGGCAGCGTATGACATGAA 57.149 47.368 0.00 0.00 44.15 2.57
1491 1507 1.745115 TTGGCTGGCAGCGTATGAC 60.745 57.895 31.22 17.63 43.62 3.06
1492 1508 1.745115 GTTGGCTGGCAGCGTATGA 60.745 57.895 31.22 13.24 43.62 2.15
1493 1509 1.308069 AAGTTGGCTGGCAGCGTATG 61.308 55.000 31.22 0.00 43.62 2.39
1494 1510 0.609131 AAAGTTGGCTGGCAGCGTAT 60.609 50.000 31.22 15.43 43.62 3.06
1495 1511 1.228124 AAAGTTGGCTGGCAGCGTA 60.228 52.632 31.22 20.71 43.62 4.42
1496 1512 2.519302 AAAGTTGGCTGGCAGCGT 60.519 55.556 31.22 14.26 43.62 5.07
1497 1513 2.256461 GAAAGTTGGCTGGCAGCG 59.744 61.111 31.22 0.63 43.62 5.18
1498 1514 0.609131 TAGGAAAGTTGGCTGGCAGC 60.609 55.000 30.93 30.93 41.46 5.25
1499 1515 1.909700 TTAGGAAAGTTGGCTGGCAG 58.090 50.000 10.94 10.94 0.00 4.85
1500 1516 2.603075 ATTAGGAAAGTTGGCTGGCA 57.397 45.000 0.00 0.00 0.00 4.92
1501 1517 3.130516 GGTAATTAGGAAAGTTGGCTGGC 59.869 47.826 0.00 0.00 0.00 4.85
1502 1518 4.340617 TGGTAATTAGGAAAGTTGGCTGG 58.659 43.478 0.00 0.00 0.00 4.85
1503 1519 5.652014 TGATGGTAATTAGGAAAGTTGGCTG 59.348 40.000 0.00 0.00 0.00 4.85
1504 1520 5.826643 TGATGGTAATTAGGAAAGTTGGCT 58.173 37.500 0.00 0.00 0.00 4.75
1505 1521 6.715347 ATGATGGTAATTAGGAAAGTTGGC 57.285 37.500 0.00 0.00 0.00 4.52
1516 1532 9.830975 CGTGGGATATGAATATGATGGTAATTA 57.169 33.333 0.00 0.00 0.00 1.40
1517 1533 7.283127 GCGTGGGATATGAATATGATGGTAATT 59.717 37.037 0.00 0.00 0.00 1.40
1518 1534 6.767902 GCGTGGGATATGAATATGATGGTAAT 59.232 38.462 0.00 0.00 0.00 1.89
1519 1535 6.112734 GCGTGGGATATGAATATGATGGTAA 58.887 40.000 0.00 0.00 0.00 2.85
1520 1536 5.396324 GGCGTGGGATATGAATATGATGGTA 60.396 44.000 0.00 0.00 0.00 3.25
1521 1537 4.517285 GCGTGGGATATGAATATGATGGT 58.483 43.478 0.00 0.00 0.00 3.55
1522 1538 3.879295 GGCGTGGGATATGAATATGATGG 59.121 47.826 0.00 0.00 0.00 3.51
1523 1539 4.774124 AGGCGTGGGATATGAATATGATG 58.226 43.478 0.00 0.00 0.00 3.07
1524 1540 4.471025 TGAGGCGTGGGATATGAATATGAT 59.529 41.667 0.00 0.00 0.00 2.45
1525 1541 3.837731 TGAGGCGTGGGATATGAATATGA 59.162 43.478 0.00 0.00 0.00 2.15
1526 1542 4.206477 TGAGGCGTGGGATATGAATATG 57.794 45.455 0.00 0.00 0.00 1.78
1527 1543 4.908601 TTGAGGCGTGGGATATGAATAT 57.091 40.909 0.00 0.00 0.00 1.28
1528 1544 4.908601 ATTGAGGCGTGGGATATGAATA 57.091 40.909 0.00 0.00 0.00 1.75
1529 1545 3.795688 ATTGAGGCGTGGGATATGAAT 57.204 42.857 0.00 0.00 0.00 2.57
1530 1546 3.118075 TCAATTGAGGCGTGGGATATGAA 60.118 43.478 3.38 0.00 0.00 2.57
1531 1547 2.437651 TCAATTGAGGCGTGGGATATGA 59.562 45.455 3.38 0.00 0.00 2.15
1532 1548 2.810274 CTCAATTGAGGCGTGGGATATG 59.190 50.000 25.14 0.00 38.48 1.78
1533 1549 3.131709 CTCAATTGAGGCGTGGGATAT 57.868 47.619 25.14 0.00 38.48 1.63
1534 1550 2.620251 CTCAATTGAGGCGTGGGATA 57.380 50.000 25.14 0.00 38.48 2.59
1535 1551 3.483954 CTCAATTGAGGCGTGGGAT 57.516 52.632 25.14 0.00 38.48 3.85
1544 1560 2.449464 TGGATGGCAACCTCAATTGAG 58.551 47.619 25.75 25.75 41.71 3.02
1545 1561 2.562298 GTTGGATGGCAACCTCAATTGA 59.438 45.455 15.31 8.12 32.06 2.57
1546 1562 2.564062 AGTTGGATGGCAACCTCAATTG 59.436 45.455 15.31 0.00 33.33 2.32
1547 1563 2.893424 AGTTGGATGGCAACCTCAATT 58.107 42.857 15.31 0.00 33.33 2.32
1548 1564 2.610438 AGTTGGATGGCAACCTCAAT 57.390 45.000 15.31 0.00 33.33 2.57
1549 1565 2.380064 AAGTTGGATGGCAACCTCAA 57.620 45.000 15.31 0.00 33.33 3.02
1550 1566 2.238521 GAAAGTTGGATGGCAACCTCA 58.761 47.619 15.31 0.00 33.33 3.86
1551 1567 1.546029 GGAAAGTTGGATGGCAACCTC 59.454 52.381 15.31 8.18 33.33 3.85
1552 1568 1.147817 AGGAAAGTTGGATGGCAACCT 59.852 47.619 15.31 0.00 33.33 3.50
1553 1569 1.632589 AGGAAAGTTGGATGGCAACC 58.367 50.000 6.88 6.88 33.33 3.77
1554 1570 5.405935 AATTAGGAAAGTTGGATGGCAAC 57.594 39.130 0.00 0.00 0.00 4.17
1555 1571 5.420739 GGTAATTAGGAAAGTTGGATGGCAA 59.579 40.000 0.00 0.00 0.00 4.52
1556 1572 4.953579 GGTAATTAGGAAAGTTGGATGGCA 59.046 41.667 0.00 0.00 0.00 4.92
1557 1573 4.953579 TGGTAATTAGGAAAGTTGGATGGC 59.046 41.667 0.00 0.00 0.00 4.40
1558 1574 7.561356 AGATTGGTAATTAGGAAAGTTGGATGG 59.439 37.037 0.00 0.00 0.00 3.51
1559 1575 8.525290 AGATTGGTAATTAGGAAAGTTGGATG 57.475 34.615 0.00 0.00 0.00 3.51
1560 1576 9.547279 AAAGATTGGTAATTAGGAAAGTTGGAT 57.453 29.630 0.00 0.00 0.00 3.41
1561 1577 8.950007 AAAGATTGGTAATTAGGAAAGTTGGA 57.050 30.769 0.00 0.00 0.00 3.53
1562 1578 8.251026 GGAAAGATTGGTAATTAGGAAAGTTGG 58.749 37.037 0.00 0.00 0.00 3.77
1563 1579 8.802267 TGGAAAGATTGGTAATTAGGAAAGTTG 58.198 33.333 0.00 0.00 0.00 3.16
1564 1580 8.950007 TGGAAAGATTGGTAATTAGGAAAGTT 57.050 30.769 0.00 0.00 0.00 2.66
1567 1583 9.416284 GGTATGGAAAGATTGGTAATTAGGAAA 57.584 33.333 0.00 0.00 0.00 3.13
1568 1584 8.561769 TGGTATGGAAAGATTGGTAATTAGGAA 58.438 33.333 0.00 0.00 0.00 3.36
1569 1585 8.108378 TGGTATGGAAAGATTGGTAATTAGGA 57.892 34.615 0.00 0.00 0.00 2.94
1570 1586 8.940397 ATGGTATGGAAAGATTGGTAATTAGG 57.060 34.615 0.00 0.00 0.00 2.69
1574 1590 9.799106 CTTCTATGGTATGGAAAGATTGGTAAT 57.201 33.333 0.00 0.00 29.03 1.89
1575 1591 8.998814 TCTTCTATGGTATGGAAAGATTGGTAA 58.001 33.333 0.00 0.00 29.03 2.85
1576 1592 8.561536 TCTTCTATGGTATGGAAAGATTGGTA 57.438 34.615 0.00 0.00 29.03 3.25
1577 1593 7.451731 TCTTCTATGGTATGGAAAGATTGGT 57.548 36.000 0.00 0.00 29.03 3.67
1578 1594 8.752005 TTTCTTCTATGGTATGGAAAGATTGG 57.248 34.615 0.00 0.00 29.03 3.16
1580 1596 8.893727 CGTTTTCTTCTATGGTATGGAAAGATT 58.106 33.333 0.00 0.00 29.03 2.40
1581 1597 8.047310 ACGTTTTCTTCTATGGTATGGAAAGAT 58.953 33.333 0.00 0.00 29.03 2.40
1582 1598 7.391620 ACGTTTTCTTCTATGGTATGGAAAGA 58.608 34.615 0.00 0.00 29.03 2.52
1583 1599 7.611213 ACGTTTTCTTCTATGGTATGGAAAG 57.389 36.000 0.00 0.00 29.03 2.62
1584 1600 7.989416 AACGTTTTCTTCTATGGTATGGAAA 57.011 32.000 0.00 0.00 29.03 3.13
1585 1601 7.989416 AAACGTTTTCTTCTATGGTATGGAA 57.011 32.000 7.96 0.00 0.00 3.53
1586 1602 7.989416 AAAACGTTTTCTTCTATGGTATGGA 57.011 32.000 20.26 0.00 0.00 3.41
1600 1616 4.226761 CAGCCATGGTAGAAAACGTTTTC 58.773 43.478 35.52 35.52 45.22 2.29
1601 1617 3.552068 GCAGCCATGGTAGAAAACGTTTT 60.552 43.478 25.46 25.46 0.00 2.43
1602 1618 2.030274 GCAGCCATGGTAGAAAACGTTT 60.030 45.455 14.67 7.96 0.00 3.60
1603 1619 1.539827 GCAGCCATGGTAGAAAACGTT 59.460 47.619 14.67 0.00 0.00 3.99
1604 1620 1.165270 GCAGCCATGGTAGAAAACGT 58.835 50.000 14.67 0.00 0.00 3.99
1605 1621 1.453155 AGCAGCCATGGTAGAAAACG 58.547 50.000 14.67 0.00 34.74 3.60
1606 1622 2.683362 GGTAGCAGCCATGGTAGAAAAC 59.317 50.000 14.67 5.26 39.96 2.43
1607 1623 2.307392 TGGTAGCAGCCATGGTAGAAAA 59.693 45.455 14.67 0.00 39.96 2.29
1608 1624 1.912731 TGGTAGCAGCCATGGTAGAAA 59.087 47.619 14.67 0.00 39.96 2.52
1609 1625 1.209504 GTGGTAGCAGCCATGGTAGAA 59.790 52.381 14.67 0.00 39.96 2.10
1610 1626 0.830648 GTGGTAGCAGCCATGGTAGA 59.169 55.000 14.67 0.00 39.96 2.59
1611 1627 0.530650 CGTGGTAGCAGCCATGGTAG 60.531 60.000 14.67 7.42 39.96 3.18
1612 1628 0.973496 TCGTGGTAGCAGCCATGGTA 60.973 55.000 14.67 0.00 43.78 3.25
1613 1629 2.268920 CGTGGTAGCAGCCATGGT 59.731 61.111 14.67 0.00 40.82 3.55
1614 1630 1.815421 GTCGTGGTAGCAGCCATGG 60.815 63.158 7.63 7.63 43.78 3.66
1615 1631 0.462581 ATGTCGTGGTAGCAGCCATG 60.463 55.000 11.26 11.26 44.70 3.66
1616 1632 0.179073 GATGTCGTGGTAGCAGCCAT 60.179 55.000 0.00 0.00 41.08 4.40
1617 1633 1.218047 GATGTCGTGGTAGCAGCCA 59.782 57.895 0.00 0.00 35.93 4.75
1618 1634 0.391130 TTGATGTCGTGGTAGCAGCC 60.391 55.000 0.00 0.00 0.00 4.85
1619 1635 1.594862 GATTGATGTCGTGGTAGCAGC 59.405 52.381 0.00 0.00 0.00 5.25
1620 1636 3.170791 AGATTGATGTCGTGGTAGCAG 57.829 47.619 0.00 0.00 0.00 4.24
1621 1637 3.610040 AAGATTGATGTCGTGGTAGCA 57.390 42.857 0.00 0.00 0.00 3.49
1622 1638 6.292919 GGAATAAAGATTGATGTCGTGGTAGC 60.293 42.308 0.00 0.00 0.00 3.58
1623 1639 6.761242 TGGAATAAAGATTGATGTCGTGGTAG 59.239 38.462 0.00 0.00 0.00 3.18
1624 1640 6.537301 GTGGAATAAAGATTGATGTCGTGGTA 59.463 38.462 0.00 0.00 0.00 3.25
1625 1641 5.354234 GTGGAATAAAGATTGATGTCGTGGT 59.646 40.000 0.00 0.00 0.00 4.16
1626 1642 5.353956 TGTGGAATAAAGATTGATGTCGTGG 59.646 40.000 0.00 0.00 0.00 4.94
1627 1643 6.421377 TGTGGAATAAAGATTGATGTCGTG 57.579 37.500 0.00 0.00 0.00 4.35
1628 1644 7.465916 CGATTGTGGAATAAAGATTGATGTCGT 60.466 37.037 0.00 0.00 0.00 4.34
1629 1645 6.847792 CGATTGTGGAATAAAGATTGATGTCG 59.152 38.462 0.00 0.00 0.00 4.35
1630 1646 7.641411 CACGATTGTGGAATAAAGATTGATGTC 59.359 37.037 5.04 0.00 42.59 3.06
1631 1647 7.475015 CACGATTGTGGAATAAAGATTGATGT 58.525 34.615 5.04 0.00 42.59 3.06
1632 1648 7.903452 CACGATTGTGGAATAAAGATTGATG 57.097 36.000 5.04 0.00 42.59 3.07
1647 1663 0.304705 GAATAGCGGCCACGATTGTG 59.695 55.000 3.64 6.06 46.00 3.33
1648 1664 0.107897 TGAATAGCGGCCACGATTGT 60.108 50.000 3.64 0.00 44.60 2.71
1649 1665 1.003545 CTTGAATAGCGGCCACGATTG 60.004 52.381 3.64 0.00 44.60 2.67
1650 1666 1.299541 CTTGAATAGCGGCCACGATT 58.700 50.000 2.24 0.00 44.60 3.34
1651 1667 0.532862 CCTTGAATAGCGGCCACGAT 60.533 55.000 2.24 0.00 44.60 3.73
1652 1668 1.153449 CCTTGAATAGCGGCCACGA 60.153 57.895 2.24 0.00 44.60 4.35
1653 1669 0.742990 TTCCTTGAATAGCGGCCACG 60.743 55.000 2.24 0.00 44.63 4.94
1654 1670 1.459450 TTTCCTTGAATAGCGGCCAC 58.541 50.000 2.24 0.00 0.00 5.01
1655 1671 1.816224 GTTTTCCTTGAATAGCGGCCA 59.184 47.619 2.24 0.00 0.00 5.36
1656 1672 2.092323 AGTTTTCCTTGAATAGCGGCC 58.908 47.619 0.00 0.00 0.00 6.13
1657 1673 4.957759 TTAGTTTTCCTTGAATAGCGGC 57.042 40.909 0.00 0.00 0.00 6.53
1658 1674 9.450807 CATTAATTAGTTTTCCTTGAATAGCGG 57.549 33.333 0.00 0.00 0.00 5.52
1659 1675 8.958043 GCATTAATTAGTTTTCCTTGAATAGCG 58.042 33.333 0.00 0.00 0.00 4.26
1660 1676 9.249457 GGCATTAATTAGTTTTCCTTGAATAGC 57.751 33.333 0.00 0.00 0.00 2.97
1663 1679 9.875691 GAAGGCATTAATTAGTTTTCCTTGAAT 57.124 29.630 9.32 0.00 33.30 2.57
1664 1680 8.865090 TGAAGGCATTAATTAGTTTTCCTTGAA 58.135 29.630 9.32 0.00 33.30 2.69
1665 1681 8.415950 TGAAGGCATTAATTAGTTTTCCTTGA 57.584 30.769 9.32 1.75 33.30 3.02
1668 1684 9.474313 TGTATGAAGGCATTAATTAGTTTTCCT 57.526 29.630 0.00 0.00 35.94 3.36
1672 1688 9.855021 GTGTTGTATGAAGGCATTAATTAGTTT 57.145 29.630 0.00 0.00 35.94 2.66
1673 1689 8.466798 GGTGTTGTATGAAGGCATTAATTAGTT 58.533 33.333 0.00 0.00 35.94 2.24
1674 1690 7.613801 TGGTGTTGTATGAAGGCATTAATTAGT 59.386 33.333 0.00 0.00 35.94 2.24
1675 1691 7.995289 TGGTGTTGTATGAAGGCATTAATTAG 58.005 34.615 0.00 0.00 35.94 1.73
1676 1692 7.946381 TGGTGTTGTATGAAGGCATTAATTA 57.054 32.000 0.00 0.00 35.94 1.40
1677 1693 6.849085 TGGTGTTGTATGAAGGCATTAATT 57.151 33.333 0.00 0.00 35.94 1.40
1678 1694 6.849085 TTGGTGTTGTATGAAGGCATTAAT 57.151 33.333 0.00 0.00 35.94 1.40
1679 1695 6.663093 AGATTGGTGTTGTATGAAGGCATTAA 59.337 34.615 0.00 0.00 35.94 1.40
1680 1696 6.186957 AGATTGGTGTTGTATGAAGGCATTA 58.813 36.000 0.00 0.00 35.94 1.90
1681 1697 5.018809 AGATTGGTGTTGTATGAAGGCATT 58.981 37.500 0.00 0.00 35.94 3.56
1682 1698 4.603131 AGATTGGTGTTGTATGAAGGCAT 58.397 39.130 0.00 0.00 38.54 4.40
1683 1699 4.032960 AGATTGGTGTTGTATGAAGGCA 57.967 40.909 0.00 0.00 0.00 4.75
1684 1700 5.391312 AAAGATTGGTGTTGTATGAAGGC 57.609 39.130 0.00 0.00 0.00 4.35
1685 1701 8.792633 TCTAAAAAGATTGGTGTTGTATGAAGG 58.207 33.333 0.00 0.00 0.00 3.46
1686 1702 9.831737 CTCTAAAAAGATTGGTGTTGTATGAAG 57.168 33.333 0.00 0.00 0.00 3.02
1687 1703 9.567776 TCTCTAAAAAGATTGGTGTTGTATGAA 57.432 29.630 0.00 0.00 0.00 2.57
1688 1704 9.567776 TTCTCTAAAAAGATTGGTGTTGTATGA 57.432 29.630 0.00 0.00 0.00 2.15
1692 1708 8.197439 CCTTTTCTCTAAAAAGATTGGTGTTGT 58.803 33.333 10.92 0.00 39.04 3.32
1693 1709 7.169813 GCCTTTTCTCTAAAAAGATTGGTGTTG 59.830 37.037 10.92 0.00 39.04 3.33
1694 1710 7.147742 TGCCTTTTCTCTAAAAAGATTGGTGTT 60.148 33.333 10.92 0.00 39.04 3.32
1695 1711 6.323739 TGCCTTTTCTCTAAAAAGATTGGTGT 59.676 34.615 10.92 0.00 39.04 4.16
1696 1712 6.748132 TGCCTTTTCTCTAAAAAGATTGGTG 58.252 36.000 10.92 0.00 39.04 4.17
1697 1713 6.976934 TGCCTTTTCTCTAAAAAGATTGGT 57.023 33.333 10.92 0.00 39.04 3.67
1698 1714 6.312180 GCATGCCTTTTCTCTAAAAAGATTGG 59.688 38.462 6.36 0.00 39.04 3.16
1699 1715 6.869913 TGCATGCCTTTTCTCTAAAAAGATTG 59.130 34.615 16.68 7.06 39.04 2.67
1700 1716 6.870439 GTGCATGCCTTTTCTCTAAAAAGATT 59.130 34.615 16.68 0.00 39.04 2.40
1701 1717 6.393171 GTGCATGCCTTTTCTCTAAAAAGAT 58.607 36.000 16.68 0.00 39.04 2.40
1702 1718 5.278957 GGTGCATGCCTTTTCTCTAAAAAGA 60.279 40.000 16.68 0.00 39.04 2.52
1703 1719 4.925646 GGTGCATGCCTTTTCTCTAAAAAG 59.074 41.667 16.68 3.79 34.26 2.27
1748 1764 0.811616 GGATGTTCGCTACCTGCCTG 60.812 60.000 0.00 0.00 38.78 4.85
1784 1800 1.497286 TGGTTAGGGTCTTGCTGGTTT 59.503 47.619 0.00 0.00 0.00 3.27
1811 1827 7.215789 TGTACCACCGTTTAATTTTCTGTCTA 58.784 34.615 0.00 0.00 0.00 2.59
1821 1838 3.275999 GAGCCATGTACCACCGTTTAAT 58.724 45.455 0.00 0.00 0.00 1.40
1830 1849 2.528134 GCTAGGGAGCCATGTACCA 58.472 57.895 0.00 0.00 43.49 3.25
1855 1874 3.889134 CTTCTGGCCTGTGCGCTGA 62.889 63.158 9.73 0.00 38.85 4.26
1857 1876 4.711949 CCTTCTGGCCTGTGCGCT 62.712 66.667 9.73 0.00 38.85 5.92
1869 1888 6.352308 GCTAGTATTTTCTGGGAGTTCCTTCT 60.352 42.308 0.00 0.00 36.20 2.85
1909 1932 1.577736 AGAGCAGGATGTTAGCTGGT 58.422 50.000 0.00 0.00 39.02 4.00
1913 1936 2.935201 CAGACAAGAGCAGGATGTTAGC 59.065 50.000 0.00 0.00 39.31 3.09
1914 1937 2.935201 GCAGACAAGAGCAGGATGTTAG 59.065 50.000 0.00 0.00 39.31 2.34
1915 1938 2.302733 TGCAGACAAGAGCAGGATGTTA 59.697 45.455 0.00 0.00 39.31 2.41
1917 1940 0.689055 TGCAGACAAGAGCAGGATGT 59.311 50.000 0.00 0.00 39.31 3.06
1937 1960 1.044611 GGGCCTCAGTGTCTATCCTC 58.955 60.000 0.84 0.00 0.00 3.71
1940 1963 2.237392 AGTTTGGGCCTCAGTGTCTATC 59.763 50.000 4.53 0.00 0.00 2.08
1973 1996 2.351244 CCAGGAGGCGCTGTCTACA 61.351 63.158 7.64 0.00 0.00 2.74
1975 1998 2.037367 ACCAGGAGGCGCTGTCTA 59.963 61.111 7.64 0.00 39.06 2.59
1996 2019 5.939883 CAGTGGAAATCATTGACTAAGGTGA 59.060 40.000 0.00 0.00 35.40 4.02
2023 2046 6.403866 TGTTTAAATCATGTGCCTTCTTGT 57.596 33.333 0.00 0.00 0.00 3.16
2150 2173 1.338136 CCCCGTCAGGCCTCAATAGT 61.338 60.000 0.00 0.00 35.76 2.12
2162 2185 0.895530 CTCTTGCTAAGACCCCGTCA 59.104 55.000 0.00 0.00 34.60 4.35
2166 2189 1.224870 GGGCTCTTGCTAAGACCCC 59.775 63.158 11.29 11.29 44.13 4.95
2213 2236 2.414481 CAGAGAGTGGATTCAAGTTGCG 59.586 50.000 0.00 0.00 0.00 4.85
2219 2242 1.618343 TGCGTCAGAGAGTGGATTCAA 59.382 47.619 0.00 0.00 0.00 2.69
2224 2247 0.598562 GAGTTGCGTCAGAGAGTGGA 59.401 55.000 0.00 0.00 0.00 4.02
2250 2273 2.115427 TGCCTTGGAGGATACGAATCA 58.885 47.619 0.00 0.00 46.39 2.57
2251 2274 2.484889 GTGCCTTGGAGGATACGAATC 58.515 52.381 0.00 0.00 46.39 2.52
2252 2275 1.141053 GGTGCCTTGGAGGATACGAAT 59.859 52.381 0.00 0.00 46.39 3.34
2253 2276 0.539986 GGTGCCTTGGAGGATACGAA 59.460 55.000 0.00 0.00 46.39 3.85
2254 2277 0.616395 TGGTGCCTTGGAGGATACGA 60.616 55.000 0.00 0.00 46.39 3.43
2255 2278 0.462047 GTGGTGCCTTGGAGGATACG 60.462 60.000 0.00 0.00 46.39 3.06
2256 2279 0.618458 TGTGGTGCCTTGGAGGATAC 59.382 55.000 0.00 0.00 37.67 2.24
2257 2280 1.595311 ATGTGGTGCCTTGGAGGATA 58.405 50.000 0.00 0.00 37.67 2.59
2258 2281 1.492176 CTATGTGGTGCCTTGGAGGAT 59.508 52.381 0.00 0.00 37.67 3.24
2259 2282 0.911769 CTATGTGGTGCCTTGGAGGA 59.088 55.000 0.00 0.00 37.67 3.71
2260 2283 0.620556 ACTATGTGGTGCCTTGGAGG 59.379 55.000 0.00 0.00 38.80 4.30
2261 2284 1.278985 TCACTATGTGGTGCCTTGGAG 59.721 52.381 0.00 0.00 37.16 3.86
2262 2285 1.278985 CTCACTATGTGGTGCCTTGGA 59.721 52.381 0.00 0.00 37.16 3.53
2263 2286 1.742761 CTCACTATGTGGTGCCTTGG 58.257 55.000 0.00 0.00 37.16 3.61
2264 2287 1.089920 GCTCACTATGTGGTGCCTTG 58.910 55.000 0.00 0.00 37.16 3.61
2265 2288 0.692476 TGCTCACTATGTGGTGCCTT 59.308 50.000 11.48 0.00 37.16 4.35
2266 2289 0.692476 TTGCTCACTATGTGGTGCCT 59.308 50.000 11.48 0.00 37.16 4.75
2267 2290 1.089920 CTTGCTCACTATGTGGTGCC 58.910 55.000 11.48 0.00 37.16 5.01
2268 2291 1.089920 CCTTGCTCACTATGTGGTGC 58.910 55.000 0.00 4.28 37.16 5.01
2269 2292 2.479566 ACCTTGCTCACTATGTGGTG 57.520 50.000 0.00 0.00 38.44 4.17
2270 2293 2.371841 TCAACCTTGCTCACTATGTGGT 59.628 45.455 0.00 0.00 33.87 4.16
2271 2294 3.005554 CTCAACCTTGCTCACTATGTGG 58.994 50.000 0.00 0.00 33.87 4.17
2272 2295 3.681897 GTCTCAACCTTGCTCACTATGTG 59.318 47.826 0.00 0.00 34.45 3.21
2273 2296 3.307059 GGTCTCAACCTTGCTCACTATGT 60.307 47.826 0.00 0.00 42.80 2.29
2274 2297 3.265791 GGTCTCAACCTTGCTCACTATG 58.734 50.000 0.00 0.00 42.80 2.23
2275 2298 2.237392 GGGTCTCAACCTTGCTCACTAT 59.763 50.000 0.00 0.00 45.66 2.12
2276 2299 1.623811 GGGTCTCAACCTTGCTCACTA 59.376 52.381 0.00 0.00 45.66 2.74
2277 2300 0.398318 GGGTCTCAACCTTGCTCACT 59.602 55.000 0.00 0.00 45.66 3.41
2278 2301 0.606673 GGGGTCTCAACCTTGCTCAC 60.607 60.000 0.00 0.00 45.66 3.51
2279 2302 1.761174 GGGGTCTCAACCTTGCTCA 59.239 57.895 0.00 0.00 45.66 4.26
2280 2303 1.376037 CGGGGTCTCAACCTTGCTC 60.376 63.158 0.00 0.00 45.66 4.26
2281 2304 2.750350 CGGGGTCTCAACCTTGCT 59.250 61.111 0.00 0.00 45.66 3.91
2282 2305 2.359975 CCGGGGTCTCAACCTTGC 60.360 66.667 0.00 0.00 45.66 4.01
2283 2306 2.351276 CCCGGGGTCTCAACCTTG 59.649 66.667 14.71 0.00 45.66 3.61
2284 2307 3.647771 GCCCGGGGTCTCAACCTT 61.648 66.667 25.28 0.00 45.66 3.50
2287 2310 3.282374 AATGGCCCGGGGTCTCAAC 62.282 63.158 25.28 2.42 0.00 3.18
2288 2311 2.938798 AATGGCCCGGGGTCTCAA 60.939 61.111 25.28 0.00 0.00 3.02
2289 2312 3.407967 GAATGGCCCGGGGTCTCA 61.408 66.667 25.28 13.21 0.00 3.27
2290 2313 4.191015 GGAATGGCCCGGGGTCTC 62.191 72.222 25.28 8.90 0.00 3.36
2291 2314 4.760220 AGGAATGGCCCGGGGTCT 62.760 66.667 25.28 0.00 37.37 3.85
2292 2315 4.191015 GAGGAATGGCCCGGGGTC 62.191 72.222 25.28 11.77 37.37 4.46
2293 2316 2.850851 TAAGAGGAATGGCCCGGGGT 62.851 60.000 25.28 0.00 37.37 4.95
2294 2317 2.076184 TAAGAGGAATGGCCCGGGG 61.076 63.158 25.28 9.31 37.37 5.73
2295 2318 1.148498 GTAAGAGGAATGGCCCGGG 59.852 63.158 19.09 19.09 37.37 5.73
2296 2319 1.227556 CGTAAGAGGAATGGCCCGG 60.228 63.158 0.00 0.00 43.02 5.73
2297 2320 1.820581 TCGTAAGAGGAATGGCCCG 59.179 57.895 0.00 0.00 45.01 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.