Multiple sequence alignment - TraesCS2B01G274400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G274400 chr2B 100.000 7716 0 0 1 7716 377533644 377525929 0.000000e+00 14249.0
1 TraesCS2B01G274400 chr2B 89.960 249 18 1 2133 2374 377531388 377531140 1.620000e-81 315.0
2 TraesCS2B01G274400 chr2B 89.960 249 18 1 2257 2505 377531512 377531271 1.620000e-81 315.0
3 TraesCS2B01G274400 chr2B 90.370 135 13 0 2543 2677 377531520 377531386 2.210000e-40 178.0
4 TraesCS2B01G274400 chr2B 88.000 125 8 1 2381 2505 377531512 377531395 2.900000e-29 141.0
5 TraesCS2B01G274400 chr2B 84.615 130 19 1 2548 2677 377531390 377531262 2.260000e-25 128.0
6 TraesCS2B01G274400 chr2B 100.000 44 0 0 2504 2547 377531485 377531442 1.780000e-11 82.4
7 TraesCS2B01G274400 chr2D 97.327 4564 93 15 3174 7716 201157755 201153200 0.000000e+00 7725.0
8 TraesCS2B01G274400 chr2D 94.777 1972 58 14 567 2505 201160397 201158438 0.000000e+00 3029.0
9 TraesCS2B01G274400 chr2D 95.901 927 26 4 2133 3049 201158679 201157755 0.000000e+00 1491.0
10 TraesCS2B01G274400 chr2D 89.200 250 19 4 2133 2374 201158555 201158306 9.730000e-79 305.0
11 TraesCS2B01G274400 chr2D 89.157 249 20 1 2257 2505 201158803 201158562 3.500000e-78 303.0
12 TraesCS2B01G274400 chr2D 84.868 304 39 5 265 563 103035844 103035543 4.530000e-77 300.0
13 TraesCS2B01G274400 chr2D 94.776 134 6 1 3047 3180 561025621 561025753 2.820000e-49 207.0
14 TraesCS2B01G274400 chr2D 91.852 135 11 0 2125 2259 201158268 201158134 1.020000e-43 189.0
15 TraesCS2B01G274400 chr2A 97.065 4565 100 19 3174 7716 222597984 222593432 0.000000e+00 7657.0
16 TraesCS2B01G274400 chr2A 94.388 1978 58 13 567 2505 222600622 222598659 0.000000e+00 2988.0
17 TraesCS2B01G274400 chr2A 96.196 920 29 5 2133 3049 222598900 222597984 0.000000e+00 1500.0
18 TraesCS2B01G274400 chr2A 89.200 250 19 4 2133 2374 222598776 222598527 9.730000e-79 305.0
19 TraesCS2B01G274400 chr2A 87.149 249 25 4 2257 2505 222599024 222598783 7.630000e-70 276.0
20 TraesCS2B01G274400 chr2A 91.111 135 11 1 2125 2259 222598489 222598356 1.710000e-41 182.0
21 TraesCS2B01G274400 chr2A 84.615 130 19 1 2548 2677 222598778 222598650 2.260000e-25 128.0
22 TraesCS2B01G274400 chr5B 95.044 565 27 1 3 566 558328761 558328197 0.000000e+00 887.0
23 TraesCS2B01G274400 chr5B 93.520 571 36 1 1 570 6594004 6594574 0.000000e+00 848.0
24 TraesCS2B01G274400 chr5B 83.333 318 43 8 265 575 336222743 336222429 1.270000e-72 285.0
25 TraesCS2B01G274400 chr5B 87.603 242 24 2 1 236 592862266 592862507 7.630000e-70 276.0
26 TraesCS2B01G274400 chr6A 88.339 566 42 12 1 563 270703921 270704465 0.000000e+00 658.0
27 TraesCS2B01G274400 chr5D 85.816 564 44 16 1 563 237678530 237679058 4.040000e-157 566.0
28 TraesCS2B01G274400 chr4A 93.878 294 17 1 1 293 593498702 593498409 7.110000e-120 442.0
29 TraesCS2B01G274400 chr6B 83.587 329 44 8 256 577 699003207 699003532 4.530000e-77 300.0
30 TraesCS2B01G274400 chr6B 96.850 127 4 0 3046 3172 642870557 642870431 6.070000e-51 213.0
31 TraesCS2B01G274400 chr3B 84.466 309 38 8 265 566 331543912 331543607 5.850000e-76 296.0
32 TraesCS2B01G274400 chr3B 84.127 315 40 8 256 563 349964742 349965053 5.850000e-76 296.0
33 TraesCS2B01G274400 chr5A 83.750 320 42 8 265 577 328702649 328702333 2.110000e-75 294.0
34 TraesCS2B01G274400 chr5A 84.142 309 39 8 265 566 675491687 675491382 2.720000e-74 291.0
35 TraesCS2B01G274400 chr5A 93.525 139 7 2 3036 3172 135538718 135538580 1.010000e-48 206.0
36 TraesCS2B01G274400 chr1D 96.124 129 5 0 3044 3172 43298756 43298884 2.180000e-50 211.0
37 TraesCS2B01G274400 chr1D 94.161 137 8 0 3044 3180 5441531 5441667 7.850000e-50 209.0
38 TraesCS2B01G274400 chr1B 95.489 133 5 1 3041 3172 683747952 683748084 2.180000e-50 211.0
39 TraesCS2B01G274400 chr7D 94.737 133 7 0 3043 3175 266214385 266214253 2.820000e-49 207.0
40 TraesCS2B01G274400 chr3D 94.118 136 7 1 3047 3181 496172883 496172748 1.010000e-48 206.0
41 TraesCS2B01G274400 chrUn 90.667 150 11 3 3025 3172 11031810 11031662 6.110000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G274400 chr2B 377525929 377533644 7715 True 2201.200000 14249 91.843571 1 7716 7 chr2B.!!$R1 7715
1 TraesCS2B01G274400 chr2D 201153200 201160397 7197 True 2173.666667 7725 93.035667 567 7716 6 chr2D.!!$R2 7149
2 TraesCS2B01G274400 chr2A 222593432 222600622 7190 True 1862.285714 7657 91.389143 567 7716 7 chr2A.!!$R1 7149
3 TraesCS2B01G274400 chr5B 558328197 558328761 564 True 887.000000 887 95.044000 3 566 1 chr5B.!!$R2 563
4 TraesCS2B01G274400 chr5B 6594004 6594574 570 False 848.000000 848 93.520000 1 570 1 chr5B.!!$F1 569
5 TraesCS2B01G274400 chr6A 270703921 270704465 544 False 658.000000 658 88.339000 1 563 1 chr6A.!!$F1 562
6 TraesCS2B01G274400 chr5D 237678530 237679058 528 False 566.000000 566 85.816000 1 563 1 chr5D.!!$F1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 410 0.029834 CTGCAAAAGTGAGTGCGCTT 59.970 50.000 9.73 0.00 46.27 4.68 F
1718 1764 0.387239 CTTTTGAGCGCCTTTTCCCG 60.387 55.000 2.29 0.00 0.00 5.14 F
2774 2964 0.106149 ACCTTTGAACGCGTTCTCCT 59.894 50.000 41.46 22.48 40.14 3.69 F
3172 3372 0.323451 AATTTTGGGACCGAGGGAGC 60.323 55.000 0.00 0.00 0.00 4.70 F
3583 3787 0.798776 CGTGCAACAGAGGACCAATC 59.201 55.000 0.00 0.00 35.74 2.67 F
4372 4576 0.835941 ATGTCTCTCCTGCCACCATC 59.164 55.000 0.00 0.00 0.00 3.51 F
5101 5308 3.009723 CGGAGCCAAAAGAGCTGATAAA 58.990 45.455 0.00 0.00 41.75 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1905 1963 2.094854 CCTTCCTGCAGAATCAAACAGC 60.095 50.000 17.39 0.0 32.82 4.40 R
3153 3353 0.323451 GCTCCCTCGGTCCCAAAATT 60.323 55.000 0.00 0.0 0.00 1.82 R
4372 4576 0.392193 AGCCATCTCCTGCAGAAACG 60.392 55.000 17.39 0.0 33.62 3.60 R
4852 5058 1.144708 TCCACCTGAAATGGAACTGCA 59.855 47.619 0.00 0.0 43.43 4.41 R
5308 5515 1.810031 CGTCCAAACCTCACTTCAGCA 60.810 52.381 0.00 0.0 0.00 4.41 R
5660 5867 0.238553 GCCCTTTTCGTCTTCACAGC 59.761 55.000 0.00 0.0 0.00 4.40 R
7030 7248 0.951040 GGCTTTCGGATCATAGGGCG 60.951 60.000 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
305 309 0.818296 CTCGTGAACCCTCCTCGAAT 59.182 55.000 0.00 0.00 0.00 3.34
347 351 4.756502 ACGTCTTTAATTCAGGTAGAGGC 58.243 43.478 0.00 0.00 0.00 4.70
367 371 1.134367 CGAGTGCGGGTTGATTAGAGA 59.866 52.381 0.00 0.00 0.00 3.10
404 410 0.029834 CTGCAAAAGTGAGTGCGCTT 59.970 50.000 9.73 0.00 46.27 4.68
483 489 2.874014 TCACATTGGATGCAAGTTGGA 58.126 42.857 5.69 1.29 0.00 3.53
531 537 7.437713 AGTTTGGGACTAGATCATCACATTA 57.562 36.000 0.00 0.00 36.65 1.90
563 570 1.069668 GGTACCTGGGGTGCTATTACG 59.930 57.143 4.06 0.00 38.37 3.18
628 635 1.206849 TGTCAACAGTGTCTGCAGTCA 59.793 47.619 14.67 12.07 34.37 3.41
631 638 1.596260 CAACAGTGTCTGCAGTCAGTG 59.404 52.381 33.33 33.33 41.10 3.66
722 733 1.153329 TCGTCGGAGGAGAGAGAGC 60.153 63.158 0.00 0.00 0.00 4.09
757 774 5.672421 AAAGTTAGACTAATGGCCGTAGT 57.328 39.130 16.69 16.69 34.46 2.73
758 775 6.780457 AAAGTTAGACTAATGGCCGTAGTA 57.220 37.500 16.70 2.58 31.88 1.82
759 776 6.388435 AAGTTAGACTAATGGCCGTAGTAG 57.612 41.667 16.70 9.96 31.88 2.57
815 838 8.993424 AGAAGATAGGGATAGATAGAGAGAGAC 58.007 40.741 0.00 0.00 0.00 3.36
1413 1459 1.834822 CTCATCGGAGGGGGAGGAC 60.835 68.421 0.00 0.00 37.51 3.85
1648 1694 3.056328 GCTTCCGGTGCCAGGTTC 61.056 66.667 0.00 0.00 0.00 3.62
1711 1757 2.945668 GGATTATGACTTTTGAGCGCCT 59.054 45.455 2.29 0.00 0.00 5.52
1718 1764 0.387239 CTTTTGAGCGCCTTTTCCCG 60.387 55.000 2.29 0.00 0.00 5.14
1737 1783 6.648879 TCCCGAAGAAATGAAATTGTTTCT 57.351 33.333 7.53 7.53 44.24 2.52
1851 1897 1.197721 GCAGAAGTGCGTGCTTTACAT 59.802 47.619 0.00 0.00 40.71 2.29
1858 1904 2.223144 GTGCGTGCTTTACATCTTGTGA 59.777 45.455 0.00 0.00 0.00 3.58
1860 1906 2.736721 GCGTGCTTTACATCTTGTGAGA 59.263 45.455 0.00 0.00 36.09 3.27
1861 1907 3.186409 GCGTGCTTTACATCTTGTGAGAA 59.814 43.478 0.00 0.00 35.07 2.87
1862 1908 4.667668 GCGTGCTTTACATCTTGTGAGAAG 60.668 45.833 0.00 0.00 35.07 2.85
1863 1909 4.449068 CGTGCTTTACATCTTGTGAGAAGT 59.551 41.667 0.00 0.00 37.56 3.01
1864 1910 5.613360 CGTGCTTTACATCTTGTGAGAAGTG 60.613 44.000 0.00 0.00 34.89 3.16
1865 1911 5.237344 GTGCTTTACATCTTGTGAGAAGTGT 59.763 40.000 3.87 3.87 34.89 3.55
1905 1963 3.119291 ACGAGCTCGATTTCTTATGCTG 58.881 45.455 40.58 8.52 43.02 4.41
1960 2018 2.819984 TTTGCTGAGCCGGTGGATCC 62.820 60.000 4.20 4.20 37.30 3.36
2233 2422 2.676076 GCCATTCGTTGATTTGTTGCT 58.324 42.857 0.00 0.00 0.00 3.91
2352 2541 3.747529 GGGAGTTGCCATTTGTTGATTTG 59.252 43.478 0.00 0.00 38.95 2.32
2569 2759 1.409064 AGTGCATATCGCTCCTTCGAA 59.591 47.619 0.00 0.00 42.15 3.71
2613 2803 4.569162 TGTTTTGTCGTATATGTAGCCAGC 59.431 41.667 0.00 0.00 0.00 4.85
2774 2964 0.106149 ACCTTTGAACGCGTTCTCCT 59.894 50.000 41.46 22.48 40.14 3.69
2956 3156 9.334947 CACATAATGAAGATGGTTAGATCTTGT 57.665 33.333 0.00 0.00 41.78 3.16
2983 3183 2.432146 ACTCTTGCATTAGAGATCCGCA 59.568 45.455 19.91 0.00 43.54 5.69
3060 3260 5.349061 TTTTTCTAATACTCCCTCCGTCC 57.651 43.478 0.00 0.00 0.00 4.79
3061 3261 2.671896 TCTAATACTCCCTCCGTCCC 57.328 55.000 0.00 0.00 0.00 4.46
3062 3262 2.141911 TCTAATACTCCCTCCGTCCCT 58.858 52.381 0.00 0.00 0.00 4.20
3063 3263 3.330198 TCTAATACTCCCTCCGTCCCTA 58.670 50.000 0.00 0.00 0.00 3.53
3064 3264 3.723681 TCTAATACTCCCTCCGTCCCTAA 59.276 47.826 0.00 0.00 0.00 2.69
3065 3265 3.409804 AATACTCCCTCCGTCCCTAAA 57.590 47.619 0.00 0.00 0.00 1.85
3066 3266 3.632420 ATACTCCCTCCGTCCCTAAAT 57.368 47.619 0.00 0.00 0.00 1.40
3067 3267 2.265526 ACTCCCTCCGTCCCTAAATT 57.734 50.000 0.00 0.00 0.00 1.82
3068 3268 2.117051 ACTCCCTCCGTCCCTAAATTC 58.883 52.381 0.00 0.00 0.00 2.17
3069 3269 2.292984 ACTCCCTCCGTCCCTAAATTCT 60.293 50.000 0.00 0.00 0.00 2.40
3070 3270 2.772515 CTCCCTCCGTCCCTAAATTCTT 59.227 50.000 0.00 0.00 0.00 2.52
3071 3271 2.504175 TCCCTCCGTCCCTAAATTCTTG 59.496 50.000 0.00 0.00 0.00 3.02
3072 3272 2.238898 CCCTCCGTCCCTAAATTCTTGT 59.761 50.000 0.00 0.00 0.00 3.16
3073 3273 3.532542 CCTCCGTCCCTAAATTCTTGTC 58.467 50.000 0.00 0.00 0.00 3.18
3074 3274 3.197983 CCTCCGTCCCTAAATTCTTGTCT 59.802 47.826 0.00 0.00 0.00 3.41
3075 3275 4.323562 CCTCCGTCCCTAAATTCTTGTCTT 60.324 45.833 0.00 0.00 0.00 3.01
3076 3276 5.105064 CCTCCGTCCCTAAATTCTTGTCTTA 60.105 44.000 0.00 0.00 0.00 2.10
3077 3277 5.974108 TCCGTCCCTAAATTCTTGTCTTAG 58.026 41.667 0.00 0.00 0.00 2.18
3078 3278 5.718130 TCCGTCCCTAAATTCTTGTCTTAGA 59.282 40.000 0.00 0.00 0.00 2.10
3079 3279 6.383147 TCCGTCCCTAAATTCTTGTCTTAGAT 59.617 38.462 0.00 0.00 0.00 1.98
3080 3280 7.048512 CCGTCCCTAAATTCTTGTCTTAGATT 58.951 38.462 0.00 0.00 0.00 2.40
3081 3281 7.553044 CCGTCCCTAAATTCTTGTCTTAGATTT 59.447 37.037 0.00 0.00 0.00 2.17
3082 3282 8.391106 CGTCCCTAAATTCTTGTCTTAGATTTG 58.609 37.037 0.00 0.00 0.00 2.32
3083 3283 9.232473 GTCCCTAAATTCTTGTCTTAGATTTGT 57.768 33.333 0.00 0.00 0.00 2.83
3084 3284 9.449719 TCCCTAAATTCTTGTCTTAGATTTGTC 57.550 33.333 0.00 0.00 0.00 3.18
3085 3285 9.454859 CCCTAAATTCTTGTCTTAGATTTGTCT 57.545 33.333 0.00 0.00 0.00 3.41
3093 3293 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
3094 3294 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
3095 3295 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
3096 3296 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
3097 3297 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
3098 3298 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
3109 3309 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
3110 3310 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
3111 3311 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
3112 3312 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
3113 3313 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
3114 3314 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
3115 3315 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
3116 3316 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
3117 3317 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
3118 3318 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
3128 3328 9.962783 AGTCACGTTTTAGTATTAGATACATCC 57.037 33.333 0.00 0.00 38.21 3.51
3129 3329 8.899776 GTCACGTTTTAGTATTAGATACATCCG 58.100 37.037 0.00 0.00 38.21 4.18
3130 3330 8.623903 TCACGTTTTAGTATTAGATACATCCGT 58.376 33.333 0.00 0.00 38.21 4.69
3131 3331 9.882996 CACGTTTTAGTATTAGATACATCCGTA 57.117 33.333 0.00 0.00 38.21 4.02
3146 3346 6.961360 ACATCCGTATCTAGACAAATCTGA 57.039 37.500 0.00 0.00 36.29 3.27
3147 3347 6.976088 ACATCCGTATCTAGACAAATCTGAG 58.024 40.000 0.00 0.00 36.29 3.35
3148 3348 6.773200 ACATCCGTATCTAGACAAATCTGAGA 59.227 38.462 0.00 0.00 36.29 3.27
3149 3349 6.621316 TCCGTATCTAGACAAATCTGAGAC 57.379 41.667 0.00 0.00 36.29 3.36
3150 3350 6.120220 TCCGTATCTAGACAAATCTGAGACA 58.880 40.000 0.00 0.00 36.29 3.41
3151 3351 6.602009 TCCGTATCTAGACAAATCTGAGACAA 59.398 38.462 0.00 0.00 36.29 3.18
3152 3352 7.122204 TCCGTATCTAGACAAATCTGAGACAAA 59.878 37.037 0.00 0.00 36.29 2.83
3153 3353 7.759886 CCGTATCTAGACAAATCTGAGACAAAA 59.240 37.037 0.00 0.00 36.29 2.44
3154 3354 9.140286 CGTATCTAGACAAATCTGAGACAAAAA 57.860 33.333 0.00 0.00 36.29 1.94
3160 3360 8.652810 AGACAAATCTGAGACAAAAATTTTGG 57.347 30.769 20.79 3.67 32.29 3.28
3161 3361 7.712205 AGACAAATCTGAGACAAAAATTTTGGG 59.288 33.333 20.79 5.88 32.29 4.12
3162 3362 7.563906 ACAAATCTGAGACAAAAATTTTGGGA 58.436 30.769 20.79 11.34 0.00 4.37
3163 3363 7.495606 ACAAATCTGAGACAAAAATTTTGGGAC 59.504 33.333 20.79 12.19 0.00 4.46
3164 3364 5.529581 TCTGAGACAAAAATTTTGGGACC 57.470 39.130 20.79 8.78 0.00 4.46
3165 3365 4.037446 TCTGAGACAAAAATTTTGGGACCG 59.963 41.667 20.79 7.85 0.00 4.79
3166 3366 3.954904 TGAGACAAAAATTTTGGGACCGA 59.045 39.130 20.79 0.00 0.00 4.69
3167 3367 4.037446 TGAGACAAAAATTTTGGGACCGAG 59.963 41.667 20.79 0.00 0.00 4.63
3168 3368 3.320826 AGACAAAAATTTTGGGACCGAGG 59.679 43.478 20.79 0.00 0.00 4.63
3169 3369 2.367241 ACAAAAATTTTGGGACCGAGGG 59.633 45.455 20.79 0.00 0.00 4.30
3170 3370 2.630580 CAAAAATTTTGGGACCGAGGGA 59.369 45.455 10.41 0.00 0.00 4.20
3171 3371 2.215942 AAATTTTGGGACCGAGGGAG 57.784 50.000 0.00 0.00 0.00 4.30
3172 3372 0.323451 AATTTTGGGACCGAGGGAGC 60.323 55.000 0.00 0.00 0.00 4.70
3232 3435 9.733556 TGAGTATTGTAGGTTTGTCACAATTAT 57.266 29.630 4.68 0.00 41.71 1.28
3369 3572 6.309737 CGGTTTACTTCAGACAGGTACATTAC 59.690 42.308 0.00 0.00 0.00 1.89
3422 3626 5.571784 ACAGCACCATCATTTATCACTTG 57.428 39.130 0.00 0.00 0.00 3.16
3583 3787 0.798776 CGTGCAACAGAGGACCAATC 59.201 55.000 0.00 0.00 35.74 2.67
3731 3935 4.496673 CCGTCTCTAGGAATTCAGAGAACG 60.497 50.000 21.08 22.24 46.63 3.95
3757 3961 8.519799 ACTTAAGTTCTTCATTCCACAAAGAA 57.480 30.769 1.12 0.00 36.84 2.52
3808 4012 4.991056 TCAGAGAACAATTTGAGTTCCTCG 59.009 41.667 2.79 0.00 44.91 4.63
3876 4080 3.165058 TGATCGAAGTTCCTCAATCCG 57.835 47.619 0.00 0.00 0.00 4.18
4372 4576 0.835941 ATGTCTCTCCTGCCACCATC 59.164 55.000 0.00 0.00 0.00 3.51
4642 4848 5.124138 TGCCTTACAGTTTTGAAGACGAAAA 59.876 36.000 0.00 0.00 32.10 2.29
4894 5100 8.122952 GTGGAGGAATTTCATTTGATTACTACG 58.877 37.037 0.00 0.00 30.81 3.51
5101 5308 3.009723 CGGAGCCAAAAGAGCTGATAAA 58.990 45.455 0.00 0.00 41.75 1.40
5108 5315 5.689068 GCCAAAAGAGCTGATAAATGTATGC 59.311 40.000 0.00 0.00 0.00 3.14
5119 5326 6.811954 TGATAAATGTATGCGAACACCTCTA 58.188 36.000 0.00 0.00 30.75 2.43
5308 5515 3.133003 AGCGTATTCAGCAGACATTACCT 59.867 43.478 0.00 0.00 37.01 3.08
5494 5701 9.189723 GAAAGCATTAATTCAAAGGATATGAGC 57.810 33.333 0.00 0.00 0.00 4.26
5520 5727 7.273320 TGAGTCTACTTAATCGGATAACCAG 57.727 40.000 0.00 0.00 35.59 4.00
5523 5730 6.606395 AGTCTACTTAATCGGATAACCAGTGT 59.394 38.462 0.00 0.00 35.59 3.55
5677 5884 3.904136 AATGCTGTGAAGACGAAAAGG 57.096 42.857 0.00 0.00 0.00 3.11
5812 6022 0.673437 CCGTGAACAAAATGGCTGGT 59.327 50.000 0.00 0.00 0.00 4.00
6227 6437 3.249687 AACCGAGGGTTTGATGCTC 57.750 52.632 0.00 0.00 44.33 4.26
6415 6625 2.032799 TGCAAATGTCCGAACTTGTGAC 59.967 45.455 0.00 0.00 0.00 3.67
6420 6630 2.828877 TGTCCGAACTTGTGACGAAAT 58.171 42.857 0.00 0.00 0.00 2.17
6951 7169 6.539826 TGAACACTGCTCGAAATCATATCATT 59.460 34.615 0.00 0.00 0.00 2.57
7030 7248 3.815401 GCTGTGGTGGGATATATGTTGAC 59.185 47.826 0.00 0.00 0.00 3.18
7281 7504 0.674581 TTCATGTTCTGCGCCAGGAG 60.675 55.000 4.18 0.00 37.14 3.69
7310 7533 2.093181 CCATGGTCCATTCGGTTAGTGA 60.093 50.000 2.57 0.00 0.00 3.41
7368 7591 4.816925 GCAAGATCCACTATACTCCAAACC 59.183 45.833 0.00 0.00 0.00 3.27
7375 7598 3.689649 CACTATACTCCAAACCCTTGCAC 59.310 47.826 0.00 0.00 0.00 4.57
7376 7599 2.969821 ATACTCCAAACCCTTGCACA 57.030 45.000 0.00 0.00 0.00 4.57
7385 7608 2.263540 CCTTGCACATGCCTTGGC 59.736 61.111 4.43 4.43 41.18 4.52
7386 7609 2.263540 CTTGCACATGCCTTGGCC 59.736 61.111 9.35 0.00 41.18 5.36
7387 7610 3.305177 CTTGCACATGCCTTGGCCC 62.305 63.158 9.35 0.00 41.18 5.80
7388 7611 3.831727 TTGCACATGCCTTGGCCCT 62.832 57.895 9.35 0.00 41.18 5.19
7389 7612 2.999063 GCACATGCCTTGGCCCTT 60.999 61.111 9.35 0.00 34.31 3.95
7390 7613 2.975536 CACATGCCTTGGCCCTTG 59.024 61.111 9.35 6.94 0.00 3.61
7391 7614 2.284112 ACATGCCTTGGCCCTTGG 60.284 61.111 9.35 0.00 0.00 3.61
7397 7620 2.736531 CTTGGCCCTTGGTGCAAC 59.263 61.111 0.00 0.00 0.00 4.17
7422 7645 2.308570 TGTCATACCAATGAGCAAGGGT 59.691 45.455 0.00 0.00 42.80 4.34
7493 7721 4.398044 AGGAGTTGTGACGTTTGTGAAAAT 59.602 37.500 0.00 0.00 0.00 1.82
7525 7753 3.921677 TCAGATCTTTACGTGGTTCACC 58.078 45.455 0.00 0.00 0.00 4.02
7542 7772 4.325028 TCACCGCTTGTTTTGAGTAGTA 57.675 40.909 0.00 0.00 0.00 1.82
7620 7850 5.250982 TGACTTTGATCTGAGTCGGTAGTA 58.749 41.667 18.06 3.78 44.03 1.82
7626 7856 6.132791 TGATCTGAGTCGGTAGTACATTTC 57.867 41.667 2.06 0.00 0.00 2.17
7634 7864 5.878669 AGTCGGTAGTACATTTCCATTTTCC 59.121 40.000 2.06 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
178 179 0.318529 CGCGCTCACTAGAGATGCAT 60.319 55.000 5.56 0.00 44.98 3.96
179 180 1.064783 CGCGCTCACTAGAGATGCA 59.935 57.895 5.56 0.00 44.98 3.96
305 309 1.079405 GGAATCGAGTTGGCGTCCA 60.079 57.895 0.00 0.00 0.00 4.02
347 351 1.134367 TCTCTAATCAACCCGCACTCG 59.866 52.381 0.00 0.00 0.00 4.18
367 371 2.903784 GCAGAAAACCCCCTACCATTTT 59.096 45.455 0.00 0.00 0.00 1.82
404 410 3.805928 CAGGTGGCTGGACTGGTA 58.194 61.111 0.00 0.00 0.00 3.25
483 489 5.815581 TGCAAAACTAGACCATTCCATACT 58.184 37.500 0.00 0.00 0.00 2.12
531 537 2.026262 CCCAGGTACCTAACTTGCACAT 60.026 50.000 15.80 0.00 33.93 3.21
576 583 6.375736 TCCAAATTTAAACACTATGCATCGGA 59.624 34.615 0.19 0.00 0.00 4.55
628 635 0.482446 TTGAATTGGTGGGGCTCACT 59.518 50.000 18.51 0.00 45.38 3.41
631 638 0.826062 CCATTGAATTGGTGGGGCTC 59.174 55.000 0.00 0.00 31.74 4.70
757 774 0.882927 GCGACTTGCACCAACCACTA 60.883 55.000 0.00 0.00 45.45 2.74
758 775 2.186826 GCGACTTGCACCAACCACT 61.187 57.895 0.00 0.00 45.45 4.00
759 776 2.331451 GCGACTTGCACCAACCAC 59.669 61.111 0.00 0.00 45.45 4.16
815 838 1.637934 CACACACACTCACACGCAG 59.362 57.895 0.00 0.00 0.00 5.18
1506 1552 2.514592 ACGAATCGGGCAGCATGG 60.515 61.111 7.80 0.00 35.86 3.66
1634 1680 2.119484 AAATCGAACCTGGCACCGGA 62.119 55.000 9.46 0.00 0.00 5.14
1682 1728 2.596904 AAGTCATAATCCCGTCACCG 57.403 50.000 0.00 0.00 0.00 4.94
1711 1757 7.984617 AGAAACAATTTCATTTCTTCGGGAAAA 59.015 29.630 4.25 0.00 41.34 2.29
1749 1795 3.702045 CCCTAAATCCACCGGCAAAAATA 59.298 43.478 0.00 0.00 0.00 1.40
1750 1796 2.499693 CCCTAAATCCACCGGCAAAAAT 59.500 45.455 0.00 0.00 0.00 1.82
1885 1943 2.097007 GCAGCATAAGAAATCGAGCTCG 60.097 50.000 30.03 30.03 41.45 5.03
1905 1963 2.094854 CCTTCCTGCAGAATCAAACAGC 60.095 50.000 17.39 0.00 32.82 4.40
2233 2422 4.351407 TCCCCAACTACAACATCCACTTTA 59.649 41.667 0.00 0.00 0.00 1.85
2352 2541 5.941948 ACTACAACATCCACTTTAGCAAC 57.058 39.130 0.00 0.00 0.00 4.17
2638 2828 7.209471 ACATCCACTTTAGCGACAAATAAAA 57.791 32.000 0.00 0.00 0.00 1.52
2709 2899 5.997746 CCTTGTAGGTGAAATTCACTCTCAA 59.002 40.000 23.30 20.88 46.19 3.02
2774 2964 7.060421 AGGAAAGAAGTTGACATTCAAGGTAA 58.940 34.615 0.00 0.00 37.00 2.85
2956 3156 7.371159 CGGATCTCTAATGCAAGAGTTACATA 58.629 38.462 13.78 0.00 43.02 2.29
3041 3241 2.517127 AGGGACGGAGGGAGTATTAGAA 59.483 50.000 0.00 0.00 0.00 2.10
3043 3243 2.679429 AGGGACGGAGGGAGTATTAG 57.321 55.000 0.00 0.00 0.00 1.73
3044 3244 4.541250 TTTAGGGACGGAGGGAGTATTA 57.459 45.455 0.00 0.00 0.00 0.98
3045 3245 3.409804 TTTAGGGACGGAGGGAGTATT 57.590 47.619 0.00 0.00 0.00 1.89
3046 3246 3.632420 ATTTAGGGACGGAGGGAGTAT 57.368 47.619 0.00 0.00 0.00 2.12
3047 3247 3.052338 AGAATTTAGGGACGGAGGGAGTA 60.052 47.826 0.00 0.00 0.00 2.59
3048 3248 2.117051 GAATTTAGGGACGGAGGGAGT 58.883 52.381 0.00 0.00 0.00 3.85
3049 3249 2.399580 AGAATTTAGGGACGGAGGGAG 58.600 52.381 0.00 0.00 0.00 4.30
3050 3250 2.504175 CAAGAATTTAGGGACGGAGGGA 59.496 50.000 0.00 0.00 0.00 4.20
3051 3251 2.238898 ACAAGAATTTAGGGACGGAGGG 59.761 50.000 0.00 0.00 0.00 4.30
3052 3252 3.197983 AGACAAGAATTTAGGGACGGAGG 59.802 47.826 0.00 0.00 0.00 4.30
3053 3253 4.473477 AGACAAGAATTTAGGGACGGAG 57.527 45.455 0.00 0.00 0.00 4.63
3054 3254 4.903045 AAGACAAGAATTTAGGGACGGA 57.097 40.909 0.00 0.00 0.00 4.69
3055 3255 5.974108 TCTAAGACAAGAATTTAGGGACGG 58.026 41.667 0.00 0.00 0.00 4.79
3056 3256 8.391106 CAAATCTAAGACAAGAATTTAGGGACG 58.609 37.037 0.00 0.00 0.00 4.79
3057 3257 9.232473 ACAAATCTAAGACAAGAATTTAGGGAC 57.768 33.333 0.00 0.00 0.00 4.46
3058 3258 9.449719 GACAAATCTAAGACAAGAATTTAGGGA 57.550 33.333 0.00 0.00 0.00 4.20
3059 3259 9.454859 AGACAAATCTAAGACAAGAATTTAGGG 57.545 33.333 0.00 0.00 31.46 3.53
3067 3267 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
3068 3268 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
3069 3269 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
3070 3270 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
3071 3271 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
3072 3272 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
3088 3288 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
3089 3289 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
3090 3290 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
3091 3291 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
3092 3292 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
3102 3302 9.962783 GGATGTATCTAATACTAAAACGTGACT 57.037 33.333 0.00 0.00 36.70 3.41
3103 3303 8.899776 CGGATGTATCTAATACTAAAACGTGAC 58.100 37.037 0.00 0.00 36.70 3.67
3104 3304 8.623903 ACGGATGTATCTAATACTAAAACGTGA 58.376 33.333 0.00 0.00 36.70 4.35
3105 3305 8.792831 ACGGATGTATCTAATACTAAAACGTG 57.207 34.615 0.00 0.00 36.70 4.49
3121 3321 8.637196 TCAGATTTGTCTAGATACGGATGTAT 57.363 34.615 0.00 0.00 43.97 2.29
3122 3322 7.937394 TCTCAGATTTGTCTAGATACGGATGTA 59.063 37.037 0.00 0.00 34.45 2.29
3123 3323 6.773200 TCTCAGATTTGTCTAGATACGGATGT 59.227 38.462 0.00 0.00 0.00 3.06
3124 3324 7.081349 GTCTCAGATTTGTCTAGATACGGATG 58.919 42.308 0.00 0.00 0.00 3.51
3125 3325 6.773200 TGTCTCAGATTTGTCTAGATACGGAT 59.227 38.462 0.00 0.00 0.00 4.18
3126 3326 6.120220 TGTCTCAGATTTGTCTAGATACGGA 58.880 40.000 0.00 0.00 0.00 4.69
3127 3327 6.378710 TGTCTCAGATTTGTCTAGATACGG 57.621 41.667 0.00 0.00 0.00 4.02
3128 3328 8.689251 TTTTGTCTCAGATTTGTCTAGATACG 57.311 34.615 0.00 0.00 0.00 3.06
3134 3334 9.748708 CCAAAATTTTTGTCTCAGATTTGTCTA 57.251 29.630 18.05 0.00 0.00 2.59
3135 3335 7.712205 CCCAAAATTTTTGTCTCAGATTTGTCT 59.288 33.333 18.05 0.00 0.00 3.41
3136 3336 7.710475 TCCCAAAATTTTTGTCTCAGATTTGTC 59.290 33.333 18.05 0.00 0.00 3.18
3137 3337 7.495606 GTCCCAAAATTTTTGTCTCAGATTTGT 59.504 33.333 18.05 0.00 0.00 2.83
3138 3338 7.041848 GGTCCCAAAATTTTTGTCTCAGATTTG 60.042 37.037 18.05 2.04 0.00 2.32
3139 3339 6.992123 GGTCCCAAAATTTTTGTCTCAGATTT 59.008 34.615 18.05 0.00 0.00 2.17
3140 3340 6.524734 GGTCCCAAAATTTTTGTCTCAGATT 58.475 36.000 18.05 0.00 0.00 2.40
3141 3341 5.278957 CGGTCCCAAAATTTTTGTCTCAGAT 60.279 40.000 18.05 0.00 0.00 2.90
3142 3342 4.037446 CGGTCCCAAAATTTTTGTCTCAGA 59.963 41.667 18.05 6.46 0.00 3.27
3143 3343 4.037446 TCGGTCCCAAAATTTTTGTCTCAG 59.963 41.667 18.05 9.73 0.00 3.35
3144 3344 3.954904 TCGGTCCCAAAATTTTTGTCTCA 59.045 39.130 18.05 0.00 0.00 3.27
3145 3345 4.546570 CTCGGTCCCAAAATTTTTGTCTC 58.453 43.478 18.05 9.04 0.00 3.36
3146 3346 3.320826 CCTCGGTCCCAAAATTTTTGTCT 59.679 43.478 18.05 0.00 0.00 3.41
3147 3347 3.554129 CCCTCGGTCCCAAAATTTTTGTC 60.554 47.826 18.05 9.60 0.00 3.18
3148 3348 2.367241 CCCTCGGTCCCAAAATTTTTGT 59.633 45.455 18.05 0.00 0.00 2.83
3149 3349 2.630580 TCCCTCGGTCCCAAAATTTTTG 59.369 45.455 13.76 13.76 0.00 2.44
3150 3350 2.897326 CTCCCTCGGTCCCAAAATTTTT 59.103 45.455 0.00 0.00 0.00 1.94
3151 3351 2.525368 CTCCCTCGGTCCCAAAATTTT 58.475 47.619 0.00 0.00 0.00 1.82
3152 3352 1.891011 GCTCCCTCGGTCCCAAAATTT 60.891 52.381 0.00 0.00 0.00 1.82
3153 3353 0.323451 GCTCCCTCGGTCCCAAAATT 60.323 55.000 0.00 0.00 0.00 1.82
3154 3354 1.303282 GCTCCCTCGGTCCCAAAAT 59.697 57.895 0.00 0.00 0.00 1.82
3155 3355 1.497309 ATGCTCCCTCGGTCCCAAAA 61.497 55.000 0.00 0.00 0.00 2.44
3156 3356 0.619255 TATGCTCCCTCGGTCCCAAA 60.619 55.000 0.00 0.00 0.00 3.28
3157 3357 0.619255 TTATGCTCCCTCGGTCCCAA 60.619 55.000 0.00 0.00 0.00 4.12
3158 3358 0.399949 ATTATGCTCCCTCGGTCCCA 60.400 55.000 0.00 0.00 0.00 4.37
3159 3359 0.765510 AATTATGCTCCCTCGGTCCC 59.234 55.000 0.00 0.00 0.00 4.46
3160 3360 2.640316 AAATTATGCTCCCTCGGTCC 57.360 50.000 0.00 0.00 0.00 4.46
3161 3361 7.923414 AAATATAAATTATGCTCCCTCGGTC 57.077 36.000 0.00 0.00 0.00 4.79
3162 3362 9.802039 TTAAAATATAAATTATGCTCCCTCGGT 57.198 29.630 0.00 0.00 0.00 4.69
3194 3397 7.388437 ACCTACAATACTCAAATACGACCAAA 58.612 34.615 0.00 0.00 0.00 3.28
3232 3435 9.899661 AACTATTATTATCAGTAAGGCACACAA 57.100 29.630 0.00 0.00 0.00 3.33
3422 3626 4.496895 GCATAGCACGAAACATTGAATCAC 59.503 41.667 0.00 0.00 0.00 3.06
3583 3787 5.241506 TGAATACCTCAAAACAGGCTTCTTG 59.758 40.000 0.00 0.00 36.98 3.02
3731 3935 8.154649 TCTTTGTGGAATGAAGAACTTAAGTC 57.845 34.615 8.95 2.91 0.00 3.01
3757 3961 5.987347 TCTGAAAATCGGTTTCTTAACTCGT 59.013 36.000 0.00 0.00 45.14 4.18
3808 4012 6.560253 TTCTTAACTTGCTCTCCATGAAAC 57.440 37.500 0.00 0.00 0.00 2.78
4129 4333 1.200948 GCACTGCCAGGATTTTCAGAC 59.799 52.381 0.00 0.00 0.00 3.51
4372 4576 0.392193 AGCCATCTCCTGCAGAAACG 60.392 55.000 17.39 0.00 33.62 3.60
4852 5058 1.144708 TCCACCTGAAATGGAACTGCA 59.855 47.619 0.00 0.00 43.43 4.41
4894 5100 8.322091 AGGGTTATATGAGCACTTGGTTATATC 58.678 37.037 8.50 0.00 36.53 1.63
5101 5308 4.737855 AACTAGAGGTGTTCGCATACAT 57.262 40.909 0.00 0.00 0.00 2.29
5108 5315 7.042335 AGATTGGATTTAACTAGAGGTGTTCG 58.958 38.462 0.00 0.00 0.00 3.95
5308 5515 1.810031 CGTCCAAACCTCACTTCAGCA 60.810 52.381 0.00 0.00 0.00 4.41
5494 5701 7.713750 TGGTTATCCGATTAAGTAGACTCAAG 58.286 38.462 0.00 0.00 36.30 3.02
5520 5727 9.554724 CAGTCACACCAATTACATTATTAACAC 57.445 33.333 0.00 0.00 0.00 3.32
5523 5730 8.871629 ACCAGTCACACCAATTACATTATTAA 57.128 30.769 0.00 0.00 0.00 1.40
5635 5842 7.011763 GCATTTCTAGATGCTCTGTGTTTATCA 59.988 37.037 10.48 0.00 46.85 2.15
5660 5867 0.238553 GCCCTTTTCGTCTTCACAGC 59.761 55.000 0.00 0.00 0.00 4.40
5677 5884 4.016444 TCCTAACTTGATCATTGGTTGCC 58.984 43.478 15.07 0.00 0.00 4.52
5939 6149 2.100197 GAAGGGTTTAGGATGCCCAAC 58.900 52.381 0.00 0.00 44.69 3.77
6184 6394 1.271001 ACGTTTACTTGGCCAGGTACC 60.271 52.381 26.07 17.98 0.00 3.34
6227 6437 2.517959 TGCTGAGAAAATGTTCCTGGG 58.482 47.619 0.00 0.00 33.92 4.45
6415 6625 5.352569 AGGAACAGCACTTATCTTCATTTCG 59.647 40.000 0.00 0.00 0.00 3.46
6420 6630 4.825422 CTGAGGAACAGCACTTATCTTCA 58.175 43.478 0.00 0.00 39.86 3.02
6853 7071 5.428457 TGACCTGTGATCCCTAATATTGTGT 59.572 40.000 0.00 0.00 0.00 3.72
6894 7112 1.770658 TCTGATATCTTGCACAGGGGG 59.229 52.381 3.98 0.00 0.00 5.40
6951 7169 2.296073 AACAAAATGGGCCGGTAGAA 57.704 45.000 1.90 0.00 0.00 2.10
7030 7248 0.951040 GGCTTTCGGATCATAGGGCG 60.951 60.000 0.00 0.00 0.00 6.13
7281 7504 2.420022 CGAATGGACCATGGAACTCAAC 59.580 50.000 21.47 8.31 0.00 3.18
7310 7533 7.501559 AGCACTAACATCTTTCATTCAGCATAT 59.498 33.333 0.00 0.00 0.00 1.78
7368 7591 2.263540 GCCAAGGCATGTGCAAGG 59.736 61.111 6.14 6.32 44.36 3.61
7375 7598 2.284112 ACCAAGGGCCAAGGCATG 60.284 61.111 13.87 8.41 44.11 4.06
7376 7599 2.284112 CACCAAGGGCCAAGGCAT 60.284 61.111 13.87 0.00 44.11 4.40
7385 7608 2.513753 TGACAATAGTTGCACCAAGGG 58.486 47.619 0.00 0.00 0.00 3.95
7386 7609 4.096382 GGTATGACAATAGTTGCACCAAGG 59.904 45.833 0.00 0.00 0.00 3.61
7387 7610 4.699735 TGGTATGACAATAGTTGCACCAAG 59.300 41.667 0.00 0.00 32.29 3.61
7388 7611 4.657013 TGGTATGACAATAGTTGCACCAA 58.343 39.130 0.00 0.00 32.29 3.67
7389 7612 4.293662 TGGTATGACAATAGTTGCACCA 57.706 40.909 0.00 0.00 32.58 4.17
7390 7613 5.356751 TCATTGGTATGACAATAGTTGCACC 59.643 40.000 0.00 0.00 38.94 5.01
7391 7614 6.435430 TCATTGGTATGACAATAGTTGCAC 57.565 37.500 0.00 0.00 38.94 4.57
7397 7620 5.240183 CCCTTGCTCATTGGTATGACAATAG 59.760 44.000 0.00 0.00 38.94 1.73
7422 7645 5.710513 AGAACAAAATGCATGTAAGCTCA 57.289 34.783 0.00 0.00 34.99 4.26
7493 7721 5.047306 ACGTAAAGATCTGAGGACATCACAA 60.047 40.000 0.00 0.00 33.22 3.33
7525 7753 5.107104 TGCTCAATACTACTCAAAACAAGCG 60.107 40.000 0.00 0.00 0.00 4.68
7542 7772 3.633986 GCATACCCTTTTAGCTGCTCAAT 59.366 43.478 4.91 0.00 0.00 2.57
7620 7850 5.046448 TGCTATTGCAGGAAAATGGAAATGT 60.046 36.000 0.00 0.00 45.31 2.71
7676 7906 6.659361 TTTTTGTACTGTAAGCACACGTTA 57.341 33.333 0.00 0.00 40.61 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.