Multiple sequence alignment - TraesCS2B01G274300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G274300 chr2B 100.000 4522 0 0 1 4522 377333694 377338215 0.000000e+00 8351.0
1 TraesCS2B01G274300 chr2B 82.591 247 40 3 320 566 4994058 4993815 9.850000e-52 215.0
2 TraesCS2B01G274300 chr2B 96.154 52 2 0 4471 4522 377517496 377517547 8.060000e-13 86.1
3 TraesCS2B01G274300 chr2D 93.473 3585 121 45 721 4284 201092186 201095678 0.000000e+00 5219.0
4 TraesCS2B01G274300 chr2D 87.313 670 80 4 1 669 201091502 201092167 0.000000e+00 761.0
5 TraesCS2B01G274300 chr2D 84.270 178 24 3 4285 4460 27923505 27923330 2.160000e-38 171.0
6 TraesCS2B01G274300 chr2D 83.085 201 19 5 4282 4470 595288879 595288682 7.780000e-38 169.0
7 TraesCS2B01G274300 chr2A 91.334 3531 151 54 598 4081 222191257 222194679 0.000000e+00 4682.0
8 TraesCS2B01G274300 chr2A 96.154 78 1 2 4104 4181 222194893 222194968 4.750000e-25 126.0
9 TraesCS2B01G274300 chr5B 85.714 196 21 4 4281 4470 600012067 600012261 2.760000e-47 200.0
10 TraesCS2B01G274300 chr5B 85.714 196 20 5 4281 4470 600033461 600033654 2.760000e-47 200.0
11 TraesCS2B01G274300 chr5B 80.435 230 31 7 330 552 478326485 478326707 3.620000e-36 163.0
12 TraesCS2B01G274300 chr5B 79.412 136 25 3 417 551 14157817 14157684 4.820000e-15 93.5
13 TraesCS2B01G274300 chr3D 86.413 184 22 3 4282 4464 586877698 586877879 9.920000e-47 198.0
14 TraesCS2B01G274300 chr6D 90.909 121 11 0 4337 4457 418162348 418162228 3.620000e-36 163.0
15 TraesCS2B01G274300 chr6D 84.884 172 13 4 4284 4443 113589290 113589460 1.300000e-35 161.0
16 TraesCS2B01G274300 chr6A 89.147 129 14 0 4339 4467 207790430 207790558 1.300000e-35 161.0
17 TraesCS2B01G274300 chr6B 83.030 165 25 3 4281 4443 484990859 484991022 3.650000e-31 147.0
18 TraesCS2B01G274300 chr1A 82.955 176 16 6 4290 4453 529262924 529262751 3.650000e-31 147.0
19 TraesCS2B01G274300 chr7B 86.614 127 15 2 4337 4462 144513012 144513137 6.100000e-29 139.0
20 TraesCS2B01G274300 chr7B 96.154 52 2 0 4471 4522 234599254 234599305 8.060000e-13 86.1
21 TraesCS2B01G274300 chr4D 92.222 90 7 0 466 555 73219307 73219396 1.320000e-25 128.0
22 TraesCS2B01G274300 chr4D 96.154 52 2 0 4471 4522 421350850 421350901 8.060000e-13 86.1
23 TraesCS2B01G274300 chr1D 89.899 99 10 0 457 555 314730283 314730381 1.320000e-25 128.0
24 TraesCS2B01G274300 chr1D 78.341 217 17 11 4282 4470 490372583 490372369 3.700000e-21 113.0
25 TraesCS2B01G274300 chr1D 96.154 52 2 0 4471 4522 198726297 198726246 8.060000e-13 86.1
26 TraesCS2B01G274300 chr1D 96.154 52 2 0 4471 4522 370985117 370985168 8.060000e-13 86.1
27 TraesCS2B01G274300 chr4B 76.695 236 41 8 320 551 68998030 68998255 7.950000e-23 119.0
28 TraesCS2B01G274300 chr4B 98.000 50 1 0 4473 4522 112234620 112234669 2.240000e-13 87.9
29 TraesCS2B01G274300 chr5D 83.036 112 19 0 443 554 542699418 542699529 8.000000e-18 102.0
30 TraesCS2B01G274300 chr5D 96.154 52 2 0 4471 4522 239969704 239969653 8.060000e-13 86.1
31 TraesCS2B01G274300 chr5D 96.154 52 2 0 4471 4522 240080720 240080669 8.060000e-13 86.1
32 TraesCS2B01G274300 chr1B 96.226 53 2 0 4470 4522 627053016 627052964 2.240000e-13 87.9
33 TraesCS2B01G274300 chr3A 75.385 195 39 8 348 536 682270465 682270274 8.060000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G274300 chr2B 377333694 377338215 4521 False 8351 8351 100.000 1 4522 1 chr2B.!!$F1 4521
1 TraesCS2B01G274300 chr2D 201091502 201095678 4176 False 2990 5219 90.393 1 4284 2 chr2D.!!$F1 4283
2 TraesCS2B01G274300 chr2A 222191257 222194968 3711 False 2404 4682 93.744 598 4181 2 chr2A.!!$F1 3583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.168788 CGTTTTGCCATGCATCTCGT 59.831 50.0 0.00 0.00 38.76 4.18 F
374 375 0.250513 GAAGCAATCCGGTCCTGACT 59.749 55.0 0.00 0.00 0.00 3.41 F
411 412 0.328926 TACCATCCGGACAAAACCCC 59.671 55.0 6.12 0.00 35.59 4.95 F
539 540 0.385029 TGTGTTCATGCCACACTTGC 59.615 50.0 21.67 3.92 44.24 4.01 F
1704 1724 0.677288 TTTTCGGCGAGGAGACTGAA 59.323 50.0 10.46 0.00 44.43 3.02 F
3037 3063 0.106519 GTTGCTCCCCATAGCCACAT 60.107 55.0 0.00 0.00 42.05 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 2012 1.291877 CGAAGGTCAAGTCCTTGCGG 61.292 60.000 3.35 0.00 46.38 5.69 R
2079 2099 1.536284 GGGATGTCGGCGACTAAGAAG 60.536 57.143 36.17 0.00 33.15 2.85 R
2322 2342 2.203153 GTGAGCCACACGGTTGGT 60.203 61.111 6.45 0.00 39.78 3.67 R
2485 2505 1.079127 TGCCGCTAGAGCAGGAAAC 60.079 57.895 14.07 1.08 42.21 2.78 R
3302 3337 0.037303 CCGGCTTAGGCATGATGGAT 59.963 55.000 6.60 0.00 40.87 3.41 R
4459 4712 0.103208 CCTACATCAGTCGGGCTGTC 59.897 60.000 9.76 0.00 45.23 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.034544 GGCAATTTTGACAACATAGGATATTTC 57.965 33.333 0.00 0.00 35.83 2.17
74 75 1.266718 TGAAAATTGCCGTGCTCACTC 59.733 47.619 0.00 0.00 0.00 3.51
79 80 0.602638 TTGCCGTGCTCACTCGAAAT 60.603 50.000 0.00 0.00 34.80 2.17
94 95 3.216147 CGAAATTTTCGCCATGTTCCT 57.784 42.857 17.61 0.00 46.97 3.36
141 142 0.168788 CGTTTTGCCATGCATCTCGT 59.831 50.000 0.00 0.00 38.76 4.18
150 151 3.156334 GCATCTCGTGCGAACGTT 58.844 55.556 17.06 0.00 45.23 3.99
161 162 1.717113 TGCGAACGTTCACTGAATACG 59.283 47.619 26.71 11.91 40.85 3.06
166 167 5.701469 CGAACGTTCACTGAATACGATTAC 58.299 41.667 26.71 0.00 38.56 1.89
183 184 5.694910 ACGATTACTGTATCTTTAATGGGCG 59.305 40.000 0.00 0.00 0.00 6.13
205 206 5.848036 GCGCTAATGCATAGTATTTCAGTTG 59.152 40.000 0.00 0.00 39.64 3.16
210 211 4.968626 TGCATAGTATTTCAGTTGTTGCG 58.031 39.130 0.00 0.00 0.00 4.85
211 212 4.454161 TGCATAGTATTTCAGTTGTTGCGT 59.546 37.500 0.00 0.00 0.00 5.24
216 217 3.684103 ATTTCAGTTGTTGCGTTTCGA 57.316 38.095 0.00 0.00 0.00 3.71
229 230 2.486128 CGTTTCGAGTCTTGCGAATTG 58.514 47.619 0.00 0.00 45.75 2.32
282 283 6.971527 CACATGTGCATCCAAAAATTACAT 57.028 33.333 13.94 0.00 0.00 2.29
286 287 8.313292 ACATGTGCATCCAAAAATTACATAACT 58.687 29.630 0.00 0.00 0.00 2.24
374 375 0.250513 GAAGCAATCCGGTCCTGACT 59.749 55.000 0.00 0.00 0.00 3.41
402 403 8.632906 TTTTACAAATAAAGTTACCATCCGGA 57.367 30.769 6.61 6.61 31.90 5.14
403 404 7.614124 TTACAAATAAAGTTACCATCCGGAC 57.386 36.000 6.12 0.00 35.59 4.79
408 409 4.841443 AAAGTTACCATCCGGACAAAAC 57.159 40.909 6.12 9.50 35.59 2.43
409 410 2.786777 AGTTACCATCCGGACAAAACC 58.213 47.619 6.12 0.00 35.59 3.27
411 412 0.328926 TACCATCCGGACAAAACCCC 59.671 55.000 6.12 0.00 35.59 4.95
412 413 1.680989 CCATCCGGACAAAACCCCC 60.681 63.158 6.12 0.00 0.00 5.40
445 446 4.097135 TGACACTTGCCATTCGAAAAGAAA 59.903 37.500 12.96 3.21 42.91 2.52
453 454 7.156876 TGCCATTCGAAAAGAAAGTTATCAT 57.843 32.000 0.00 0.00 42.91 2.45
456 457 7.253422 CCATTCGAAAAGAAAGTTATCATGCT 58.747 34.615 0.00 0.00 42.91 3.79
472 473 2.798976 TGCTTGACATCCAAAGTTGC 57.201 45.000 0.00 0.00 33.76 4.17
482 483 0.962356 CCAAAGTTGCCATCCTCGCT 60.962 55.000 0.00 0.00 0.00 4.93
486 487 0.674895 AGTTGCCATCCTCGCTTCAC 60.675 55.000 0.00 0.00 0.00 3.18
491 492 1.666189 GCCATCCTCGCTTCACTAAAC 59.334 52.381 0.00 0.00 0.00 2.01
494 495 3.372206 CCATCCTCGCTTCACTAAACTTG 59.628 47.826 0.00 0.00 0.00 3.16
498 499 1.871039 TCGCTTCACTAAACTTGCCAC 59.129 47.619 0.00 0.00 0.00 5.01
527 528 2.618241 GTTCAGAGTTGCCATGTGTTCA 59.382 45.455 0.00 0.00 0.00 3.18
539 540 0.385029 TGTGTTCATGCCACACTTGC 59.615 50.000 21.67 3.92 44.24 4.01
548 549 1.156736 GCCACACTTGCGACACTTAT 58.843 50.000 0.00 0.00 0.00 1.73
638 640 5.468746 TGTTTTGTGGTACTAGACTGATTGC 59.531 40.000 0.00 0.00 0.00 3.56
701 703 3.380004 TGAGCAAAAACTACACTGGTTGG 59.620 43.478 0.00 0.00 0.00 3.77
706 708 6.071278 AGCAAAAACTACACTGGTTGGTTTTA 60.071 34.615 5.09 0.00 44.15 1.52
710 712 9.727859 AAAAACTACACTGGTTGGTTTTATTTT 57.272 25.926 3.82 0.00 44.15 1.82
711 713 9.727859 AAAACTACACTGGTTGGTTTTATTTTT 57.272 25.926 0.00 0.00 36.48 1.94
748 753 7.268586 AGACTGATTGATGGTAGTACATGAAC 58.731 38.462 0.00 0.00 27.02 3.18
761 766 1.074775 ATGAACACATGTGCCCGGT 59.925 52.632 25.68 2.60 0.00 5.28
946 961 1.071699 CCGAGGAAGAGAACCCAACAA 59.928 52.381 0.00 0.00 0.00 2.83
947 962 2.417719 CGAGGAAGAGAACCCAACAAG 58.582 52.381 0.00 0.00 0.00 3.16
948 963 2.224305 CGAGGAAGAGAACCCAACAAGT 60.224 50.000 0.00 0.00 0.00 3.16
949 964 3.006537 CGAGGAAGAGAACCCAACAAGTA 59.993 47.826 0.00 0.00 0.00 2.24
950 965 4.570930 GAGGAAGAGAACCCAACAAGTAG 58.429 47.826 0.00 0.00 0.00 2.57
951 966 3.075148 GGAAGAGAACCCAACAAGTAGC 58.925 50.000 0.00 0.00 0.00 3.58
952 967 2.861147 AGAGAACCCAACAAGTAGCC 57.139 50.000 0.00 0.00 0.00 3.93
953 968 2.054799 AGAGAACCCAACAAGTAGCCA 58.945 47.619 0.00 0.00 0.00 4.75
1704 1724 0.677288 TTTTCGGCGAGGAGACTGAA 59.323 50.000 10.46 0.00 44.43 3.02
1863 1883 1.078848 GCTCAACATCACCTCCGCT 60.079 57.895 0.00 0.00 0.00 5.52
2325 2345 1.069090 GGTGAAGACACTGCGACCA 59.931 57.895 0.00 0.00 45.32 4.02
2340 2360 2.978010 CCAACCGTGTGGCTCACC 60.978 66.667 13.55 0.00 43.51 4.02
2401 2421 1.117150 GGACATCTTGGCTACCCGTA 58.883 55.000 0.00 0.00 0.00 4.02
2485 2505 5.117355 TGTGAAGGTAACGTTCAGTCTAG 57.883 43.478 2.82 0.00 46.39 2.43
2489 2509 6.143598 GTGAAGGTAACGTTCAGTCTAGTTTC 59.856 42.308 2.82 0.00 46.39 2.78
2532 2555 3.499918 CCAAGCTCTGGTACTGTTTCTTG 59.500 47.826 6.74 2.31 40.78 3.02
2541 2564 4.220821 TGGTACTGTTTCTTGGCAAACAAA 59.779 37.500 0.00 0.49 43.90 2.83
2543 2566 5.462068 GGTACTGTTTCTTGGCAAACAAATC 59.538 40.000 0.00 0.00 43.90 2.17
2575 2598 4.121317 CACTGGTTGTGCAAATTTGACAT 58.879 39.130 22.31 5.45 40.06 3.06
2583 2606 8.011106 GGTTGTGCAAATTTGACATGAATTTAG 58.989 33.333 22.31 0.00 35.54 1.85
2586 2609 9.491675 TGTGCAAATTTGACATGAATTTAGAAT 57.508 25.926 22.31 0.00 35.54 2.40
2615 2638 5.708948 TGTAGCAATTTAACATGGTGAAGC 58.291 37.500 0.00 0.00 0.00 3.86
2617 2640 5.410355 AGCAATTTAACATGGTGAAGCAT 57.590 34.783 0.00 0.00 0.00 3.79
2632 2655 4.919754 GTGAAGCATCAATTTCAACACTCC 59.080 41.667 0.00 0.00 37.30 3.85
2641 2664 6.898041 TCAATTTCAACACTCCGAAGTTATG 58.102 36.000 0.00 0.00 31.71 1.90
2715 2738 4.023792 TGTTTGTAGCATCAAGAACAGCAG 60.024 41.667 0.00 0.00 0.00 4.24
2747 2770 3.193263 CATATGCAGTGAAAGCTCGACT 58.807 45.455 0.00 0.00 0.00 4.18
2748 2771 2.175878 ATGCAGTGAAAGCTCGACTT 57.824 45.000 0.00 0.00 41.70 3.01
2749 2772 1.220529 TGCAGTGAAAGCTCGACTTG 58.779 50.000 0.00 0.00 39.09 3.16
2750 2773 1.221414 GCAGTGAAAGCTCGACTTGT 58.779 50.000 0.00 0.00 39.09 3.16
2751 2774 1.070309 GCAGTGAAAGCTCGACTTGTG 60.070 52.381 0.00 0.69 39.09 3.33
2752 2775 2.205074 CAGTGAAAGCTCGACTTGTGT 58.795 47.619 0.00 0.00 39.09 3.72
2753 2776 3.381045 CAGTGAAAGCTCGACTTGTGTA 58.619 45.455 0.00 0.00 39.09 2.90
2754 2777 3.990469 CAGTGAAAGCTCGACTTGTGTAT 59.010 43.478 0.00 0.00 39.09 2.29
2755 2778 5.161358 CAGTGAAAGCTCGACTTGTGTATA 58.839 41.667 0.00 0.00 39.09 1.47
2756 2779 5.807520 CAGTGAAAGCTCGACTTGTGTATAT 59.192 40.000 0.00 0.00 39.09 0.86
2757 2780 5.807520 AGTGAAAGCTCGACTTGTGTATATG 59.192 40.000 0.00 0.00 39.09 1.78
2758 2781 5.577164 GTGAAAGCTCGACTTGTGTATATGT 59.423 40.000 0.00 0.00 39.09 2.29
2759 2782 5.576774 TGAAAGCTCGACTTGTGTATATGTG 59.423 40.000 0.00 0.00 39.09 3.21
2760 2783 4.046938 AGCTCGACTTGTGTATATGTGG 57.953 45.455 0.00 0.00 0.00 4.17
2761 2784 3.123804 GCTCGACTTGTGTATATGTGGG 58.876 50.000 0.00 0.00 0.00 4.61
2762 2785 3.181479 GCTCGACTTGTGTATATGTGGGA 60.181 47.826 0.00 0.00 0.00 4.37
2763 2786 4.360563 CTCGACTTGTGTATATGTGGGAC 58.639 47.826 0.00 0.00 0.00 4.46
2776 2799 1.697432 TGTGGGACAGTTTGTAGGGAG 59.303 52.381 0.00 0.00 41.80 4.30
2790 2813 9.449719 AGTTTGTAGGGAGACAATTTATAAGTG 57.550 33.333 0.00 0.00 39.04 3.16
2791 2814 9.444600 GTTTGTAGGGAGACAATTTATAAGTGA 57.555 33.333 5.50 0.00 39.04 3.41
2792 2815 9.667107 TTTGTAGGGAGACAATTTATAAGTGAG 57.333 33.333 5.50 0.00 39.04 3.51
2793 2816 7.272978 TGTAGGGAGACAATTTATAAGTGAGC 58.727 38.462 5.50 0.00 0.00 4.26
2794 2817 5.685728 AGGGAGACAATTTATAAGTGAGCC 58.314 41.667 5.50 0.00 0.00 4.70
2795 2818 4.822350 GGGAGACAATTTATAAGTGAGCCC 59.178 45.833 5.50 0.00 31.75 5.19
2796 2819 5.437060 GGAGACAATTTATAAGTGAGCCCA 58.563 41.667 5.50 0.00 0.00 5.36
2797 2820 5.297029 GGAGACAATTTATAAGTGAGCCCAC 59.703 44.000 0.00 0.00 43.50 4.61
2847 2870 6.321717 TGCATTGCACTAACACTTTATAAGC 58.678 36.000 7.38 0.00 31.71 3.09
2868 2891 2.669391 CGAGCAGGCAATTTTCAGGTTC 60.669 50.000 0.00 0.00 0.00 3.62
2907 2930 4.880164 AGTAGTAAAGGGAGCAGTATCCA 58.120 43.478 0.00 0.00 41.52 3.41
3035 3061 1.453928 GGTTGCTCCCCATAGCCAC 60.454 63.158 0.00 0.00 42.05 5.01
3037 3063 0.106519 GTTGCTCCCCATAGCCACAT 60.107 55.000 0.00 0.00 42.05 3.21
3152 3187 6.483307 GTGCTATGTGTGGATTCAGCTAATTA 59.517 38.462 0.00 0.00 0.00 1.40
3159 3194 8.264347 TGTGTGGATTCAGCTAATTAATGACTA 58.736 33.333 0.00 0.00 0.00 2.59
3320 3355 1.446907 GATCCATCATGCCTAAGCCG 58.553 55.000 0.00 0.00 38.69 5.52
3492 3527 4.593206 ACAAGAAGTCATCCAAGACCAGTA 59.407 41.667 0.00 0.00 39.34 2.74
3493 3528 5.071788 ACAAGAAGTCATCCAAGACCAGTAA 59.928 40.000 0.00 0.00 39.34 2.24
3494 3529 6.176183 CAAGAAGTCATCCAAGACCAGTAAT 58.824 40.000 0.00 0.00 39.34 1.89
3571 3607 3.574826 GTCTCGATTTAGTGGGGAGCTAT 59.425 47.826 0.00 0.00 0.00 2.97
3572 3608 3.827302 TCTCGATTTAGTGGGGAGCTATC 59.173 47.826 0.00 0.00 0.00 2.08
3573 3609 3.829601 CTCGATTTAGTGGGGAGCTATCT 59.170 47.826 0.00 0.00 0.00 1.98
3574 3610 4.994282 TCGATTTAGTGGGGAGCTATCTA 58.006 43.478 0.00 0.00 0.00 1.98
3631 3667 3.321445 GGAGGAGCCCTGGGTTAC 58.679 66.667 15.56 9.57 31.76 2.50
3633 3669 3.387225 GAGGAGCCCTGGGTTACGC 62.387 68.421 15.56 7.27 31.76 4.42
3644 3683 4.014406 CCTGGGTTACGCTTTAGGATTTT 58.986 43.478 0.36 0.00 0.00 1.82
3645 3684 4.461431 CCTGGGTTACGCTTTAGGATTTTT 59.539 41.667 0.36 0.00 0.00 1.94
3646 3685 5.648960 CCTGGGTTACGCTTTAGGATTTTTA 59.351 40.000 0.36 0.00 0.00 1.52
3647 3686 6.403964 CCTGGGTTACGCTTTAGGATTTTTAC 60.404 42.308 0.36 0.00 0.00 2.01
3649 3688 6.716173 TGGGTTACGCTTTAGGATTTTTACTT 59.284 34.615 0.36 0.00 0.00 2.24
3650 3689 7.231115 TGGGTTACGCTTTAGGATTTTTACTTT 59.769 33.333 0.36 0.00 0.00 2.66
3652 3691 9.467258 GGTTACGCTTTAGGATTTTTACTTTTT 57.533 29.630 0.00 0.00 0.00 1.94
3656 3695 8.301720 ACGCTTTAGGATTTTTACTTTTTAGGG 58.698 33.333 0.00 0.00 0.00 3.53
3664 3703 7.811236 GGATTTTTACTTTTTAGGGAAGAACGG 59.189 37.037 0.00 0.00 0.00 4.44
3665 3704 5.694231 TTTACTTTTTAGGGAAGAACGGC 57.306 39.130 0.00 0.00 0.00 5.68
3666 3705 2.148768 ACTTTTTAGGGAAGAACGGCG 58.851 47.619 4.80 4.80 0.00 6.46
3667 3706 1.467342 CTTTTTAGGGAAGAACGGCGG 59.533 52.381 13.24 0.00 0.00 6.13
3668 3707 0.397564 TTTTAGGGAAGAACGGCGGT 59.602 50.000 13.24 3.35 0.00 5.68
3717 3756 7.119407 GGAACCTCTTATGTTTTACCTCTTGTC 59.881 40.741 0.00 0.00 0.00 3.18
3736 3775 4.912528 GTCGATTGACAGTTCTTCTTCC 57.087 45.455 8.31 0.00 44.82 3.46
3738 3777 3.005472 TCGATTGACAGTTCTTCTTCCGT 59.995 43.478 0.00 0.00 0.00 4.69
3741 3780 5.577164 CGATTGACAGTTCTTCTTCCGTAAT 59.423 40.000 0.00 0.00 0.00 1.89
3763 3808 2.356665 TGTTGTACACATTGGGCAGT 57.643 45.000 0.00 0.00 0.00 4.40
3797 3845 4.228356 CAAGCTGCTCTTACTGCCTACAG 61.228 52.174 1.00 0.00 40.56 2.74
3877 3925 7.948278 ATGTTTCAGTTCTTCTGTGTACTAC 57.052 36.000 0.00 0.00 43.97 2.73
3878 3926 7.108841 TGTTTCAGTTCTTCTGTGTACTACT 57.891 36.000 0.00 0.00 43.97 2.57
3879 3927 8.229253 TGTTTCAGTTCTTCTGTGTACTACTA 57.771 34.615 0.00 0.00 43.97 1.82
3880 3928 8.350722 TGTTTCAGTTCTTCTGTGTACTACTAG 58.649 37.037 0.00 0.00 43.97 2.57
3881 3929 8.351461 GTTTCAGTTCTTCTGTGTACTACTAGT 58.649 37.037 0.00 0.00 43.97 2.57
3882 3930 9.565090 TTTCAGTTCTTCTGTGTACTACTAGTA 57.435 33.333 1.89 1.89 43.97 1.82
3883 3931 8.545229 TCAGTTCTTCTGTGTACTACTAGTAC 57.455 38.462 16.61 16.61 44.66 2.73
3969 4024 1.616159 TCCTTTTTCCCTGGAAAGCG 58.384 50.000 10.98 6.82 43.75 4.68
3997 4052 2.474266 CGAATGGTCGTTGCGTGG 59.526 61.111 0.00 0.00 42.53 4.94
4030 4085 5.163269 TGGATCGATGAGTTCAATGGATCTT 60.163 40.000 0.54 0.00 33.87 2.40
4031 4086 5.762218 GGATCGATGAGTTCAATGGATCTTT 59.238 40.000 0.54 0.00 33.87 2.52
4112 4359 0.678366 TGGTGTGTGTCCGTGCTTTT 60.678 50.000 0.00 0.00 0.00 2.27
4214 4461 4.389576 GAGTTGGCACCGCAAGCG 62.390 66.667 7.60 7.60 39.44 4.68
4241 4494 7.488322 CAAATGTACAAACGGGGAAATATCAT 58.512 34.615 0.00 0.00 0.00 2.45
4255 4508 4.579454 AATATCATGTGCAATGCTCCAC 57.421 40.909 6.82 0.00 0.00 4.02
4273 4526 5.121768 GCTCCACGCTCTAACTTTGATAAAA 59.878 40.000 0.00 0.00 35.14 1.52
4287 4540 9.899226 AACTTTGATAAAACAGATTGTAAGAGC 57.101 29.630 0.00 0.00 0.00 4.09
4288 4541 8.230486 ACTTTGATAAAACAGATTGTAAGAGCG 58.770 33.333 0.00 0.00 0.00 5.03
4289 4542 7.667043 TTGATAAAACAGATTGTAAGAGCGT 57.333 32.000 0.00 0.00 0.00 5.07
4290 4543 7.290857 TGATAAAACAGATTGTAAGAGCGTC 57.709 36.000 0.00 0.00 0.00 5.19
4291 4544 7.097192 TGATAAAACAGATTGTAAGAGCGTCT 58.903 34.615 0.00 0.00 0.00 4.18
4292 4545 8.248253 TGATAAAACAGATTGTAAGAGCGTCTA 58.752 33.333 0.00 0.00 0.00 2.59
4293 4546 6.707599 AAAACAGATTGTAAGAGCGTCTAC 57.292 37.500 0.00 0.00 0.00 2.59
4294 4547 5.386958 AACAGATTGTAAGAGCGTCTACA 57.613 39.130 0.00 0.00 0.00 2.74
4295 4548 5.386958 ACAGATTGTAAGAGCGTCTACAA 57.613 39.130 9.13 9.13 36.93 2.41
4296 4549 5.162075 ACAGATTGTAAGAGCGTCTACAAC 58.838 41.667 8.95 5.24 35.59 3.32
4297 4550 4.563184 CAGATTGTAAGAGCGTCTACAACC 59.437 45.833 8.95 1.68 35.59 3.77
4298 4551 2.624316 TGTAAGAGCGTCTACAACCG 57.376 50.000 0.00 0.00 0.00 4.44
4299 4552 1.200716 TGTAAGAGCGTCTACAACCGG 59.799 52.381 0.00 0.00 0.00 5.28
4300 4553 1.470098 GTAAGAGCGTCTACAACCGGA 59.530 52.381 9.46 0.00 0.00 5.14
4301 4554 0.243095 AAGAGCGTCTACAACCGGAC 59.757 55.000 9.46 0.00 0.00 4.79
4302 4555 1.153881 GAGCGTCTACAACCGGACC 60.154 63.158 9.46 0.00 0.00 4.46
4303 4556 1.593296 GAGCGTCTACAACCGGACCT 61.593 60.000 9.46 0.00 0.00 3.85
4304 4557 1.153881 GCGTCTACAACCGGACCTC 60.154 63.158 9.46 0.00 0.00 3.85
4305 4558 1.593296 GCGTCTACAACCGGACCTCT 61.593 60.000 9.46 0.00 0.00 3.69
4306 4559 0.450983 CGTCTACAACCGGACCTCTC 59.549 60.000 9.46 0.00 0.00 3.20
4307 4560 1.542492 GTCTACAACCGGACCTCTCA 58.458 55.000 9.46 0.00 0.00 3.27
4308 4561 1.891150 GTCTACAACCGGACCTCTCAA 59.109 52.381 9.46 0.00 0.00 3.02
4309 4562 2.298163 GTCTACAACCGGACCTCTCAAA 59.702 50.000 9.46 0.00 0.00 2.69
4310 4563 2.298163 TCTACAACCGGACCTCTCAAAC 59.702 50.000 9.46 0.00 0.00 2.93
4311 4564 0.108019 ACAACCGGACCTCTCAAACC 59.892 55.000 9.46 0.00 0.00 3.27
4312 4565 0.605589 CAACCGGACCTCTCAAACCC 60.606 60.000 9.46 0.00 0.00 4.11
4313 4566 2.108278 AACCGGACCTCTCAAACCCG 62.108 60.000 9.46 0.00 39.85 5.28
4314 4567 2.434359 CGGACCTCTCAAACCCGC 60.434 66.667 0.00 0.00 33.47 6.13
4315 4568 2.046217 GGACCTCTCAAACCCGCC 60.046 66.667 0.00 0.00 0.00 6.13
4316 4569 2.593956 GGACCTCTCAAACCCGCCT 61.594 63.158 0.00 0.00 0.00 5.52
4317 4570 1.375326 GACCTCTCAAACCCGCCTT 59.625 57.895 0.00 0.00 0.00 4.35
4318 4571 0.611714 GACCTCTCAAACCCGCCTTA 59.388 55.000 0.00 0.00 0.00 2.69
4319 4572 1.209747 GACCTCTCAAACCCGCCTTAT 59.790 52.381 0.00 0.00 0.00 1.73
4320 4573 2.433239 GACCTCTCAAACCCGCCTTATA 59.567 50.000 0.00 0.00 0.00 0.98
4321 4574 2.169978 ACCTCTCAAACCCGCCTTATAC 59.830 50.000 0.00 0.00 0.00 1.47
4322 4575 2.470821 CTCTCAAACCCGCCTTATACG 58.529 52.381 0.00 0.00 0.00 3.06
4323 4576 1.826720 TCTCAAACCCGCCTTATACGT 59.173 47.619 0.00 0.00 0.00 3.57
4324 4577 2.159198 TCTCAAACCCGCCTTATACGTC 60.159 50.000 0.00 0.00 0.00 4.34
4325 4578 1.826720 TCAAACCCGCCTTATACGTCT 59.173 47.619 0.00 0.00 0.00 4.18
4326 4579 1.931172 CAAACCCGCCTTATACGTCTG 59.069 52.381 0.00 0.00 0.00 3.51
4327 4580 0.462789 AACCCGCCTTATACGTCTGG 59.537 55.000 0.00 0.00 0.00 3.86
4328 4581 1.366366 CCCGCCTTATACGTCTGGG 59.634 63.158 0.00 0.00 0.00 4.45
4329 4582 1.300697 CCGCCTTATACGTCTGGGC 60.301 63.158 0.00 0.96 39.43 5.36
4330 4583 4.338327 GCCTTATACGTCTGGGCG 57.662 61.111 0.00 0.00 33.30 6.13
4331 4584 1.300697 GCCTTATACGTCTGGGCGG 60.301 63.158 0.00 0.00 35.98 6.13
4332 4585 1.366366 CCTTATACGTCTGGGCGGG 59.634 63.158 0.00 0.00 35.98 6.13
4333 4586 1.300697 CTTATACGTCTGGGCGGGC 60.301 63.158 0.00 0.00 35.98 6.13
4334 4587 2.710724 CTTATACGTCTGGGCGGGCC 62.711 65.000 14.65 14.65 35.98 5.80
4349 4602 3.428282 GCCGCCGGTCACGATTTT 61.428 61.111 4.45 0.00 44.60 1.82
4350 4603 2.973316 GCCGCCGGTCACGATTTTT 61.973 57.895 4.45 0.00 44.60 1.94
4365 4618 3.125520 TTTTTGACCCAGACAGGCC 57.874 52.632 0.00 0.00 35.39 5.19
4366 4619 0.469144 TTTTTGACCCAGACAGGCCC 60.469 55.000 0.00 0.00 35.39 5.80
4367 4620 2.366153 TTTTGACCCAGACAGGCCCC 62.366 60.000 0.00 0.00 35.39 5.80
4368 4621 3.810687 TTGACCCAGACAGGCCCCT 62.811 63.158 0.00 0.00 35.39 4.79
4369 4622 3.403558 GACCCAGACAGGCCCCTC 61.404 72.222 0.00 0.00 35.39 4.30
4370 4623 4.270153 ACCCAGACAGGCCCCTCA 62.270 66.667 0.00 0.00 35.39 3.86
4371 4624 2.935481 CCCAGACAGGCCCCTCAA 60.935 66.667 0.00 0.00 35.39 3.02
4372 4625 2.538141 CCCAGACAGGCCCCTCAAA 61.538 63.158 0.00 0.00 35.39 2.69
4373 4626 1.303643 CCAGACAGGCCCCTCAAAC 60.304 63.158 0.00 0.00 0.00 2.93
4374 4627 1.672356 CAGACAGGCCCCTCAAACG 60.672 63.158 0.00 0.00 0.00 3.60
4375 4628 2.147387 AGACAGGCCCCTCAAACGT 61.147 57.895 0.00 0.00 0.00 3.99
4376 4629 1.671379 GACAGGCCCCTCAAACGTC 60.671 63.158 0.00 0.00 0.00 4.34
4377 4630 2.359975 CAGGCCCCTCAAACGTCC 60.360 66.667 0.00 0.00 0.00 4.79
4378 4631 4.016706 AGGCCCCTCAAACGTCCG 62.017 66.667 0.00 0.00 0.00 4.79
4382 4635 4.016706 CCCTCAAACGTCCGGGCT 62.017 66.667 3.66 0.00 0.00 5.19
4383 4636 2.742372 CCTCAAACGTCCGGGCTG 60.742 66.667 3.66 0.00 0.00 4.85
4384 4637 2.342279 CTCAAACGTCCGGGCTGA 59.658 61.111 3.66 0.00 0.00 4.26
4385 4638 2.027625 CTCAAACGTCCGGGCTGAC 61.028 63.158 3.66 0.00 0.00 3.51
4386 4639 3.047877 CAAACGTCCGGGCTGACC 61.048 66.667 3.66 0.00 31.35 4.02
4409 4662 3.686647 CCCCCATATCCAGCCCAA 58.313 61.111 0.00 0.00 0.00 4.12
4410 4663 1.937541 CCCCCATATCCAGCCCAAA 59.062 57.895 0.00 0.00 0.00 3.28
4411 4664 0.488668 CCCCCATATCCAGCCCAAAT 59.511 55.000 0.00 0.00 0.00 2.32
4412 4665 1.715931 CCCCCATATCCAGCCCAAATA 59.284 52.381 0.00 0.00 0.00 1.40
4413 4666 2.315763 CCCCCATATCCAGCCCAAATAT 59.684 50.000 0.00 0.00 0.00 1.28
4414 4667 3.531397 CCCCCATATCCAGCCCAAATATA 59.469 47.826 0.00 0.00 0.00 0.86
4415 4668 4.386761 CCCCCATATCCAGCCCAAATATAG 60.387 50.000 0.00 0.00 0.00 1.31
4416 4669 4.386761 CCCCATATCCAGCCCAAATATAGG 60.387 50.000 0.00 0.00 0.00 2.57
4427 4680 5.228945 CCCAAATATAGGGCGGATATAGG 57.771 47.826 0.49 0.00 39.96 2.57
4428 4681 4.041691 CCCAAATATAGGGCGGATATAGGG 59.958 50.000 0.49 10.61 39.96 3.53
4429 4682 4.041691 CCAAATATAGGGCGGATATAGGGG 59.958 50.000 0.00 0.00 0.00 4.79
4430 4683 2.393630 TATAGGGCGGATATAGGGGC 57.606 55.000 0.00 0.00 0.00 5.80
4431 4684 0.759436 ATAGGGCGGATATAGGGGCG 60.759 60.000 0.00 0.00 0.00 6.13
4432 4685 4.468689 GGGCGGATATAGGGGCGC 62.469 72.222 0.00 0.00 0.00 6.53
4433 4686 3.391382 GGCGGATATAGGGGCGCT 61.391 66.667 7.64 9.68 0.00 5.92
4434 4687 2.184579 GCGGATATAGGGGCGCTC 59.815 66.667 7.59 1.18 0.00 5.03
4435 4688 2.490217 CGGATATAGGGGCGCTCG 59.510 66.667 7.59 0.66 0.00 5.03
4436 4689 2.893398 GGATATAGGGGCGCTCGG 59.107 66.667 7.59 0.00 0.00 4.63
4437 4690 2.722201 GGATATAGGGGCGCTCGGG 61.722 68.421 7.59 0.00 0.00 5.14
4438 4691 3.372554 GATATAGGGGCGCTCGGGC 62.373 68.421 7.59 0.00 41.35 6.13
4439 4692 4.926162 TATAGGGGCGCTCGGGCA 62.926 66.667 8.62 0.00 44.56 5.36
4454 4707 3.857854 GCACGCTCGCCACATCAG 61.858 66.667 0.00 0.00 0.00 2.90
4455 4708 2.125952 CACGCTCGCCACATCAGA 60.126 61.111 0.00 0.00 0.00 3.27
4456 4709 2.125912 ACGCTCGCCACATCAGAC 60.126 61.111 0.00 0.00 0.00 3.51
4457 4710 2.887568 CGCTCGCCACATCAGACC 60.888 66.667 0.00 0.00 0.00 3.85
4458 4711 2.512515 GCTCGCCACATCAGACCC 60.513 66.667 0.00 0.00 0.00 4.46
4459 4712 2.202797 CTCGCCACATCAGACCCG 60.203 66.667 0.00 0.00 0.00 5.28
4460 4713 2.678580 TCGCCACATCAGACCCGA 60.679 61.111 0.00 0.00 0.00 5.14
4461 4714 2.509336 CGCCACATCAGACCCGAC 60.509 66.667 0.00 0.00 0.00 4.79
4462 4715 2.662596 GCCACATCAGACCCGACA 59.337 61.111 0.00 0.00 0.00 4.35
4463 4716 1.448540 GCCACATCAGACCCGACAG 60.449 63.158 0.00 0.00 0.00 3.51
4464 4717 1.448540 CCACATCAGACCCGACAGC 60.449 63.158 0.00 0.00 0.00 4.40
4465 4718 1.448540 CACATCAGACCCGACAGCC 60.449 63.158 0.00 0.00 0.00 4.85
4466 4719 2.187946 CATCAGACCCGACAGCCC 59.812 66.667 0.00 0.00 0.00 5.19
4467 4720 3.461773 ATCAGACCCGACAGCCCG 61.462 66.667 0.00 0.00 0.00 6.13
4468 4721 3.957435 ATCAGACCCGACAGCCCGA 62.957 63.158 0.00 0.00 0.00 5.14
4469 4722 4.436998 CAGACCCGACAGCCCGAC 62.437 72.222 0.00 0.00 0.00 4.79
4470 4723 4.680537 AGACCCGACAGCCCGACT 62.681 66.667 0.00 0.00 0.00 4.18
4483 4736 2.896278 CCGACTGATGTAGGGTGGA 58.104 57.895 0.00 0.00 35.66 4.02
4484 4737 1.414158 CCGACTGATGTAGGGTGGAT 58.586 55.000 0.00 0.00 35.66 3.41
4485 4738 2.594131 CCGACTGATGTAGGGTGGATA 58.406 52.381 0.00 0.00 35.66 2.59
4486 4739 2.296471 CCGACTGATGTAGGGTGGATAC 59.704 54.545 0.00 0.00 35.66 2.24
4487 4740 2.296471 CGACTGATGTAGGGTGGATACC 59.704 54.545 0.00 0.00 46.76 2.73
4496 4749 1.752833 GGTGGATACCCTAAGGCCG 59.247 63.158 0.00 0.00 41.36 6.13
4497 4750 0.761702 GGTGGATACCCTAAGGCCGA 60.762 60.000 0.00 0.00 41.36 5.54
4498 4751 1.349067 GTGGATACCCTAAGGCCGAT 58.651 55.000 0.00 0.00 36.11 4.18
4499 4752 1.275573 GTGGATACCCTAAGGCCGATC 59.724 57.143 0.00 0.00 36.11 3.69
4500 4753 1.149288 TGGATACCCTAAGGCCGATCT 59.851 52.381 0.00 0.00 36.11 2.75
4501 4754 2.258109 GGATACCCTAAGGCCGATCTT 58.742 52.381 0.00 0.00 36.11 2.40
4502 4755 2.638363 GGATACCCTAAGGCCGATCTTT 59.362 50.000 0.00 0.00 36.11 2.52
4503 4756 3.306849 GGATACCCTAAGGCCGATCTTTC 60.307 52.174 0.00 0.00 36.11 2.62
4504 4757 1.580059 ACCCTAAGGCCGATCTTTCA 58.420 50.000 0.00 0.00 36.11 2.69
4505 4758 1.209747 ACCCTAAGGCCGATCTTTCAC 59.790 52.381 0.00 0.00 36.11 3.18
4506 4759 1.571919 CCTAAGGCCGATCTTTCACG 58.428 55.000 0.00 0.00 0.00 4.35
4507 4760 1.136305 CCTAAGGCCGATCTTTCACGA 59.864 52.381 0.00 0.00 0.00 4.35
4508 4761 2.418197 CCTAAGGCCGATCTTTCACGAA 60.418 50.000 0.00 0.00 0.00 3.85
4509 4762 2.178912 AAGGCCGATCTTTCACGAAA 57.821 45.000 0.00 0.00 0.00 3.46
4510 4763 2.403252 AGGCCGATCTTTCACGAAAT 57.597 45.000 0.00 0.00 0.00 2.17
4511 4764 2.009774 AGGCCGATCTTTCACGAAATG 58.990 47.619 0.00 0.00 0.00 2.32
4512 4765 1.064060 GGCCGATCTTTCACGAAATGG 59.936 52.381 0.00 0.00 0.00 3.16
4513 4766 2.006888 GCCGATCTTTCACGAAATGGA 58.993 47.619 0.00 0.00 0.00 3.41
4514 4767 2.223044 GCCGATCTTTCACGAAATGGAC 60.223 50.000 0.00 0.00 0.00 4.02
4515 4768 2.029244 CCGATCTTTCACGAAATGGACG 59.971 50.000 0.00 0.00 0.00 4.79
4516 4769 2.029244 CGATCTTTCACGAAATGGACGG 59.971 50.000 0.00 0.00 34.93 4.79
4517 4770 1.803334 TCTTTCACGAAATGGACGGG 58.197 50.000 0.00 0.00 35.35 5.28
4518 4771 1.345089 TCTTTCACGAAATGGACGGGA 59.655 47.619 0.00 0.00 41.43 5.14
4519 4772 2.027561 TCTTTCACGAAATGGACGGGAT 60.028 45.455 0.00 0.00 42.63 3.85
4520 4773 2.018542 TTCACGAAATGGACGGGATC 57.981 50.000 0.00 0.00 42.63 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 5.324409 TGTCAAAATTGCCAAGTCTCCTAT 58.676 37.500 0.00 0.00 0.00 2.57
15 16 4.724399 TGTCAAAATTGCCAAGTCTCCTA 58.276 39.130 0.00 0.00 0.00 2.94
18 19 4.681744 TGTTGTCAAAATTGCCAAGTCTC 58.318 39.130 0.00 0.00 0.00 3.36
51 52 3.127548 AGTGAGCACGGCAATTTTCATAG 59.872 43.478 0.00 0.00 36.20 2.23
53 54 1.888512 AGTGAGCACGGCAATTTTCAT 59.111 42.857 0.00 0.00 36.20 2.57
56 57 0.238289 CGAGTGAGCACGGCAATTTT 59.762 50.000 0.00 0.00 36.20 1.82
62 63 0.517316 AAATTTCGAGTGAGCACGGC 59.483 50.000 0.00 0.00 36.20 5.68
79 80 1.035923 TTGCAGGAACATGGCGAAAA 58.964 45.000 0.00 0.00 0.00 2.29
117 118 2.492881 AGATGCATGGCAAAACGAATGA 59.507 40.909 2.46 0.00 43.62 2.57
141 142 1.717113 CGTATTCAGTGAACGTTCGCA 59.283 47.619 35.58 20.65 40.06 5.10
161 162 5.701290 AGCGCCCATTAAAGATACAGTAATC 59.299 40.000 2.29 0.00 0.00 1.75
166 167 5.617751 GCATTAGCGCCCATTAAAGATACAG 60.618 44.000 2.29 0.00 0.00 2.74
183 184 7.166473 GCAACAACTGAAATACTATGCATTAGC 59.834 37.037 3.54 0.00 42.57 3.09
205 206 0.718220 CGCAAGACTCGAAACGCAAC 60.718 55.000 0.00 0.00 43.02 4.17
229 230 5.992217 ACCACTCTCGAAATAATCCTTATGC 59.008 40.000 0.00 0.00 0.00 3.14
232 233 6.942976 ACAACCACTCTCGAAATAATCCTTA 58.057 36.000 0.00 0.00 0.00 2.69
244 245 1.995484 CATGTGCTACAACCACTCTCG 59.005 52.381 0.00 0.00 34.38 4.04
276 277 9.965824 CTGGAACTCAACAAAAAGTTATGTAAT 57.034 29.630 0.00 0.00 38.74 1.89
282 283 6.657541 AGTGACTGGAACTCAACAAAAAGTTA 59.342 34.615 0.00 0.00 38.74 2.24
286 287 7.639113 AATAGTGACTGGAACTCAACAAAAA 57.361 32.000 0.00 0.00 0.00 1.94
347 348 2.324330 CGGATTGCTTCGTGCCACA 61.324 57.895 0.00 0.00 42.00 4.17
350 351 2.746277 ACCGGATTGCTTCGTGCC 60.746 61.111 9.46 0.00 42.00 5.01
364 365 9.769093 CTTTATTTGTAAAAATAGTCAGGACCG 57.231 33.333 0.00 0.00 0.00 4.79
393 394 1.076014 GGGGTTTTGTCCGGATGGT 59.924 57.895 7.81 0.00 36.30 3.55
416 417 3.380004 TCGAATGGCAAGTGTCAGTTTTT 59.620 39.130 0.00 0.00 30.80 1.94
424 425 4.097892 ACTTTCTTTTCGAATGGCAAGTGT 59.902 37.500 12.28 6.43 32.61 3.55
445 446 5.948162 ACTTTGGATGTCAAGCATGATAACT 59.052 36.000 0.00 0.00 38.06 2.24
453 454 1.340889 GGCAACTTTGGATGTCAAGCA 59.659 47.619 0.00 0.00 36.62 3.91
456 457 2.562298 GGATGGCAACTTTGGATGTCAA 59.438 45.455 0.00 0.00 33.79 3.18
472 473 3.252974 AGTTTAGTGAAGCGAGGATGG 57.747 47.619 0.00 0.00 0.00 3.51
527 528 0.819259 AAGTGTCGCAAGTGTGGCAT 60.819 50.000 2.04 0.00 42.47 4.40
536 537 2.037902 TGAACCCTGATAAGTGTCGCAA 59.962 45.455 0.00 0.00 0.00 4.85
539 540 3.594603 ACTGAACCCTGATAAGTGTCG 57.405 47.619 0.00 0.00 0.00 4.35
585 586 9.903682 CTCAGTATCACAGATTTTTGACAAAAT 57.096 29.630 13.90 5.00 43.97 1.82
590 592 8.345565 ACAAACTCAGTATCACAGATTTTTGAC 58.654 33.333 0.00 0.00 29.34 3.18
603 605 7.492352 AGTACCACAAAACAAACTCAGTATC 57.508 36.000 0.00 0.00 0.00 2.24
607 609 6.761714 AGTCTAGTACCACAAAACAAACTCAG 59.238 38.462 0.00 0.00 0.00 3.35
675 677 6.031751 ACCAGTGTAGTTTTTGCTCAAAAA 57.968 33.333 14.41 14.41 44.98 1.94
676 678 5.652994 ACCAGTGTAGTTTTTGCTCAAAA 57.347 34.783 3.86 3.86 38.40 2.44
677 679 5.406649 CAACCAGTGTAGTTTTTGCTCAAA 58.593 37.500 0.00 0.00 0.00 2.69
678 680 4.142271 CCAACCAGTGTAGTTTTTGCTCAA 60.142 41.667 0.00 0.00 0.00 3.02
679 681 3.380004 CCAACCAGTGTAGTTTTTGCTCA 59.620 43.478 0.00 0.00 0.00 4.26
680 682 3.380320 ACCAACCAGTGTAGTTTTTGCTC 59.620 43.478 0.00 0.00 0.00 4.26
682 684 3.793797 ACCAACCAGTGTAGTTTTTGC 57.206 42.857 0.00 0.00 0.00 3.68
683 685 8.710835 AATAAAACCAACCAGTGTAGTTTTTG 57.289 30.769 12.21 0.00 39.66 2.44
684 686 9.727859 AAAATAAAACCAACCAGTGTAGTTTTT 57.272 25.926 12.21 4.48 39.66 1.94
710 712 6.829229 TCAATCAGTCTAGTTCGTCCTAAA 57.171 37.500 0.00 0.00 0.00 1.85
711 713 6.183360 CCATCAATCAGTCTAGTTCGTCCTAA 60.183 42.308 0.00 0.00 0.00 2.69
712 714 5.299531 CCATCAATCAGTCTAGTTCGTCCTA 59.700 44.000 0.00 0.00 0.00 2.94
714 716 4.142138 ACCATCAATCAGTCTAGTTCGTCC 60.142 45.833 0.00 0.00 0.00 4.79
715 717 5.000012 ACCATCAATCAGTCTAGTTCGTC 58.000 43.478 0.00 0.00 0.00 4.20
716 718 5.652891 ACTACCATCAATCAGTCTAGTTCGT 59.347 40.000 0.00 0.00 0.00 3.85
717 719 6.137794 ACTACCATCAATCAGTCTAGTTCG 57.862 41.667 0.00 0.00 0.00 3.95
718 720 7.997482 TGTACTACCATCAATCAGTCTAGTTC 58.003 38.462 0.00 0.00 0.00 3.01
719 721 7.956328 TGTACTACCATCAATCAGTCTAGTT 57.044 36.000 0.00 0.00 0.00 2.24
722 724 8.414003 GTTCATGTACTACCATCAATCAGTCTA 58.586 37.037 0.00 0.00 0.00 2.59
723 725 7.093333 TGTTCATGTACTACCATCAATCAGTCT 60.093 37.037 4.01 0.00 0.00 3.24
748 753 3.903783 CCTAACCGGGCACATGTG 58.096 61.111 21.83 21.83 0.00 3.21
761 766 2.946791 GCTAAAAATGGACCGGGCCTAA 60.947 50.000 30.93 8.89 0.00 2.69
946 961 1.482593 CTTGGGATTCTCGTGGCTACT 59.517 52.381 0.00 0.00 0.00 2.57
947 962 1.480954 TCTTGGGATTCTCGTGGCTAC 59.519 52.381 0.00 0.00 0.00 3.58
948 963 1.757118 CTCTTGGGATTCTCGTGGCTA 59.243 52.381 0.00 0.00 0.00 3.93
949 964 0.539051 CTCTTGGGATTCTCGTGGCT 59.461 55.000 0.00 0.00 0.00 4.75
950 965 0.462759 CCTCTTGGGATTCTCGTGGC 60.463 60.000 0.00 0.00 37.23 5.01
951 966 1.137872 CTCCTCTTGGGATTCTCGTGG 59.862 57.143 0.00 0.00 44.15 4.94
952 967 2.100584 CTCTCCTCTTGGGATTCTCGTG 59.899 54.545 0.00 0.00 44.15 4.35
953 968 2.383855 CTCTCCTCTTGGGATTCTCGT 58.616 52.381 0.00 0.00 44.15 4.18
1581 1601 1.612676 TCCATATCCGGTAGGTGTCG 58.387 55.000 0.00 0.00 39.05 4.35
1987 2007 4.697756 CAAGTCCTTGCGGCCGGA 62.698 66.667 29.38 24.35 33.45 5.14
1992 2012 1.291877 CGAAGGTCAAGTCCTTGCGG 61.292 60.000 3.35 0.00 46.38 5.69
2001 2021 1.630244 CGGCAAGCTCGAAGGTCAAG 61.630 60.000 0.00 0.00 0.00 3.02
2079 2099 1.536284 GGGATGTCGGCGACTAAGAAG 60.536 57.143 36.17 0.00 33.15 2.85
2322 2342 2.203153 GTGAGCCACACGGTTGGT 60.203 61.111 6.45 0.00 39.78 3.67
2340 2360 2.492090 CTCAGCGGGAAGTCCTCG 59.508 66.667 0.00 0.94 35.95 4.63
2485 2505 1.079127 TGCCGCTAGAGCAGGAAAC 60.079 57.895 14.07 1.08 42.21 2.78
2515 2535 3.126001 TGCCAAGAAACAGTACCAGAG 57.874 47.619 0.00 0.00 0.00 3.35
2532 2555 2.422276 AACTGAGCGATTTGTTTGCC 57.578 45.000 0.00 0.00 35.03 4.52
2586 2609 8.851145 TCACCATGTTAAATTGCTACAAAGTAA 58.149 29.630 0.00 0.00 0.00 2.24
2588 2611 7.283625 TCACCATGTTAAATTGCTACAAAGT 57.716 32.000 0.00 0.00 0.00 2.66
2615 2638 5.362556 ACTTCGGAGTGTTGAAATTGATG 57.637 39.130 0.00 0.00 33.99 3.07
2617 2640 6.485313 ACATAACTTCGGAGTGTTGAAATTGA 59.515 34.615 12.08 0.00 35.91 2.57
2632 2655 7.801547 ATTTTGCTTGATTCACATAACTTCG 57.198 32.000 0.00 0.00 0.00 3.79
2674 2697 7.195374 ACAAACAGCTAGATAGTCCCAATAA 57.805 36.000 0.00 0.00 0.00 1.40
2715 2738 3.993535 GCATATGCTGCCCCTAGC 58.006 61.111 20.64 0.00 45.66 3.42
2747 2770 5.626142 ACAAACTGTCCCACATATACACAA 58.374 37.500 0.00 0.00 0.00 3.33
2748 2771 5.235850 ACAAACTGTCCCACATATACACA 57.764 39.130 0.00 0.00 0.00 3.72
2749 2772 5.815740 CCTACAAACTGTCCCACATATACAC 59.184 44.000 0.00 0.00 0.00 2.90
2750 2773 5.104693 CCCTACAAACTGTCCCACATATACA 60.105 44.000 0.00 0.00 0.00 2.29
2751 2774 5.129815 TCCCTACAAACTGTCCCACATATAC 59.870 44.000 0.00 0.00 0.00 1.47
2752 2775 5.282129 TCCCTACAAACTGTCCCACATATA 58.718 41.667 0.00 0.00 0.00 0.86
2753 2776 4.108570 TCCCTACAAACTGTCCCACATAT 58.891 43.478 0.00 0.00 0.00 1.78
2754 2777 3.517901 CTCCCTACAAACTGTCCCACATA 59.482 47.826 0.00 0.00 0.00 2.29
2755 2778 2.305927 CTCCCTACAAACTGTCCCACAT 59.694 50.000 0.00 0.00 0.00 3.21
2756 2779 1.697432 CTCCCTACAAACTGTCCCACA 59.303 52.381 0.00 0.00 0.00 4.17
2757 2780 1.975680 TCTCCCTACAAACTGTCCCAC 59.024 52.381 0.00 0.00 0.00 4.61
2758 2781 1.975680 GTCTCCCTACAAACTGTCCCA 59.024 52.381 0.00 0.00 0.00 4.37
2759 2782 1.975680 TGTCTCCCTACAAACTGTCCC 59.024 52.381 0.00 0.00 0.00 4.46
2760 2783 3.764237 TTGTCTCCCTACAAACTGTCC 57.236 47.619 0.00 0.00 36.45 4.02
2761 2784 7.923414 ATAAATTGTCTCCCTACAAACTGTC 57.077 36.000 0.00 0.00 42.33 3.51
2762 2785 9.449719 CTTATAAATTGTCTCCCTACAAACTGT 57.550 33.333 0.00 0.00 42.33 3.55
2763 2786 9.449719 ACTTATAAATTGTCTCCCTACAAACTG 57.550 33.333 0.00 0.00 42.33 3.16
2791 2814 0.179936 GCATCTGAGCTTAGTGGGCT 59.820 55.000 5.29 0.00 43.26 5.19
2792 2815 0.179936 AGCATCTGAGCTTAGTGGGC 59.820 55.000 5.29 7.85 43.70 5.36
2793 2816 1.483827 TGAGCATCTGAGCTTAGTGGG 59.516 52.381 5.29 0.00 46.75 4.61
2794 2817 2.975732 TGAGCATCTGAGCTTAGTGG 57.024 50.000 5.29 0.46 46.75 4.00
2795 2818 4.325028 AGATGAGCATCTGAGCTTAGTG 57.675 45.455 11.93 4.79 46.75 2.74
2831 2854 5.109903 CCTGCTCGCTTATAAAGTGTTAGT 58.890 41.667 0.61 0.00 39.93 2.24
2834 2857 2.678336 GCCTGCTCGCTTATAAAGTGTT 59.322 45.455 0.61 0.00 39.93 3.32
2835 2858 2.280628 GCCTGCTCGCTTATAAAGTGT 58.719 47.619 0.61 0.00 39.93 3.55
2836 2859 2.279741 TGCCTGCTCGCTTATAAAGTG 58.720 47.619 0.00 0.00 40.33 3.16
2837 2860 2.691409 TGCCTGCTCGCTTATAAAGT 57.309 45.000 0.00 0.00 0.00 2.66
2838 2861 4.558538 AATTGCCTGCTCGCTTATAAAG 57.441 40.909 0.00 0.00 0.00 1.85
2839 2862 4.981806 AAATTGCCTGCTCGCTTATAAA 57.018 36.364 0.00 0.00 0.00 1.40
2840 2863 4.397730 TGAAAATTGCCTGCTCGCTTATAA 59.602 37.500 0.00 0.00 0.00 0.98
2841 2864 3.944650 TGAAAATTGCCTGCTCGCTTATA 59.055 39.130 0.00 0.00 0.00 0.98
2842 2865 2.754552 TGAAAATTGCCTGCTCGCTTAT 59.245 40.909 0.00 0.00 0.00 1.73
2843 2866 2.158559 TGAAAATTGCCTGCTCGCTTA 58.841 42.857 0.00 0.00 0.00 3.09
2844 2867 0.961019 TGAAAATTGCCTGCTCGCTT 59.039 45.000 0.00 0.00 0.00 4.68
2845 2868 0.524862 CTGAAAATTGCCTGCTCGCT 59.475 50.000 0.00 0.00 0.00 4.93
2846 2869 0.457337 CCTGAAAATTGCCTGCTCGC 60.457 55.000 0.00 0.00 0.00 5.03
2847 2870 0.883833 ACCTGAAAATTGCCTGCTCG 59.116 50.000 0.00 0.00 0.00 5.03
2868 2891 5.277857 ACTACTCAACTCCCCATTTATCG 57.722 43.478 0.00 0.00 0.00 2.92
2907 2930 8.462016 GGATATTTCAGAAAGTGTTAGTGCATT 58.538 33.333 1.28 0.00 0.00 3.56
3007 3032 1.818555 GGAGCAACCAATCCCATGC 59.181 57.895 0.00 0.00 38.79 4.06
3152 3187 5.012239 ACCTGCATCAACAACATAGTCATT 58.988 37.500 0.00 0.00 0.00 2.57
3159 3194 1.336148 CGCAACCTGCATCAACAACAT 60.336 47.619 0.00 0.00 45.36 2.71
3302 3337 0.037303 CCGGCTTAGGCATGATGGAT 59.963 55.000 6.60 0.00 40.87 3.41
3320 3355 1.374758 CGAGCTCTTGTGGGTGTCC 60.375 63.158 12.85 0.00 0.00 4.02
3492 3527 5.539955 TCTCTTTGCTCTTGCCCTTTTTATT 59.460 36.000 0.00 0.00 38.71 1.40
3493 3528 5.047731 GTCTCTTTGCTCTTGCCCTTTTTAT 60.048 40.000 0.00 0.00 38.71 1.40
3494 3529 4.278419 GTCTCTTTGCTCTTGCCCTTTTTA 59.722 41.667 0.00 0.00 38.71 1.52
3571 3607 4.163458 GGTTCTGGGTCATGGTGTATTAGA 59.837 45.833 0.00 0.00 0.00 2.10
3572 3608 4.164221 AGGTTCTGGGTCATGGTGTATTAG 59.836 45.833 0.00 0.00 0.00 1.73
3573 3609 4.080582 CAGGTTCTGGGTCATGGTGTATTA 60.081 45.833 0.00 0.00 0.00 0.98
3574 3610 2.919602 AGGTTCTGGGTCATGGTGTATT 59.080 45.455 0.00 0.00 0.00 1.89
3631 3667 8.517056 TCCCTAAAAAGTAAAAATCCTAAAGCG 58.483 33.333 0.00 0.00 0.00 4.68
3644 3683 3.747529 CGCCGTTCTTCCCTAAAAAGTAA 59.252 43.478 0.00 0.00 0.00 2.24
3645 3684 3.328505 CGCCGTTCTTCCCTAAAAAGTA 58.671 45.455 0.00 0.00 0.00 2.24
3646 3685 2.148768 CGCCGTTCTTCCCTAAAAAGT 58.851 47.619 0.00 0.00 0.00 2.66
3647 3686 1.467342 CCGCCGTTCTTCCCTAAAAAG 59.533 52.381 0.00 0.00 0.00 2.27
3649 3688 0.397564 ACCGCCGTTCTTCCCTAAAA 59.602 50.000 0.00 0.00 0.00 1.52
3650 3689 0.320946 CACCGCCGTTCTTCCCTAAA 60.321 55.000 0.00 0.00 0.00 1.85
3652 3691 2.652095 CCACCGCCGTTCTTCCCTA 61.652 63.158 0.00 0.00 0.00 3.53
3658 3697 4.388499 AATCGCCACCGCCGTTCT 62.388 61.111 0.00 0.00 0.00 3.01
3659 3698 4.160635 CAATCGCCACCGCCGTTC 62.161 66.667 0.00 0.00 0.00 3.95
3664 3703 2.178273 GTTTCCAATCGCCACCGC 59.822 61.111 0.00 0.00 0.00 5.68
3665 3704 1.501741 CTGTTTCCAATCGCCACCG 59.498 57.895 0.00 0.00 0.00 4.94
3666 3705 1.212751 GCTGTTTCCAATCGCCACC 59.787 57.895 0.00 0.00 0.00 4.61
3667 3706 1.398390 CTAGCTGTTTCCAATCGCCAC 59.602 52.381 0.00 0.00 0.00 5.01
3668 3707 1.003118 ACTAGCTGTTTCCAATCGCCA 59.997 47.619 0.00 0.00 0.00 5.69
3717 3756 3.318017 ACGGAAGAAGAACTGTCAATCG 58.682 45.455 0.00 0.00 0.00 3.34
3725 3764 5.820947 ACAACAACATTACGGAAGAAGAACT 59.179 36.000 0.00 0.00 0.00 3.01
3736 3775 5.150683 CCCAATGTGTACAACAACATTACG 58.849 41.667 8.59 3.81 43.61 3.18
3738 3777 4.584743 TGCCCAATGTGTACAACAACATTA 59.415 37.500 8.59 0.00 43.61 1.90
3741 3780 2.360483 CTGCCCAATGTGTACAACAACA 59.640 45.455 0.00 0.00 43.61 3.33
3763 3808 3.292426 CAGCTTGTGCAATTTGGCA 57.708 47.368 0.00 0.00 42.74 4.92
3787 3832 2.023501 AGAAGAGATCCCTGTAGGCAGT 60.024 50.000 0.00 0.00 41.02 4.40
3877 3925 5.354054 ACACAACAGACGTACAGTACTAG 57.646 43.478 9.10 0.00 0.00 2.57
3878 3926 5.756195 AACACAACAGACGTACAGTACTA 57.244 39.130 9.10 0.00 0.00 1.82
3879 3927 4.644103 AACACAACAGACGTACAGTACT 57.356 40.909 9.10 0.00 0.00 2.73
3880 3928 4.799949 TCAAACACAACAGACGTACAGTAC 59.200 41.667 0.00 0.00 0.00 2.73
3881 3929 4.996344 TCAAACACAACAGACGTACAGTA 58.004 39.130 0.00 0.00 0.00 2.74
3882 3930 3.852286 TCAAACACAACAGACGTACAGT 58.148 40.909 0.00 0.00 0.00 3.55
3883 3931 4.109766 TCTCAAACACAACAGACGTACAG 58.890 43.478 0.00 0.00 0.00 2.74
3969 4024 3.592381 CGACCATTCGTCCATCATTTC 57.408 47.619 0.00 0.00 40.61 2.17
4030 4085 1.953686 CCGCACCAGAAAGAGGAAAAA 59.046 47.619 0.00 0.00 0.00 1.94
4031 4086 1.142060 TCCGCACCAGAAAGAGGAAAA 59.858 47.619 0.00 0.00 0.00 2.29
4112 4359 1.410083 GGCCAATGATTCTGCCCTACA 60.410 52.381 0.00 0.00 37.94 2.74
4194 4441 1.639298 GCTTGCGGTGCCAACTCTAG 61.639 60.000 0.00 0.00 0.00 2.43
4214 4461 1.249407 TCCCCGTTTGTACATTTGCC 58.751 50.000 0.00 0.00 0.00 4.52
4215 4462 3.372660 TTTCCCCGTTTGTACATTTGC 57.627 42.857 0.00 0.00 0.00 3.68
4216 4463 6.857956 TGATATTTCCCCGTTTGTACATTTG 58.142 36.000 0.00 0.00 0.00 2.32
4217 4464 7.123547 ACATGATATTTCCCCGTTTGTACATTT 59.876 33.333 0.00 0.00 0.00 2.32
4255 4508 8.230486 ACAATCTGTTTTATCAAAGTTAGAGCG 58.770 33.333 0.00 0.00 0.00 5.03
4273 4526 5.162075 GTTGTAGACGCTCTTACAATCTGT 58.838 41.667 6.95 0.00 35.30 3.41
4284 4537 1.153881 GGTCCGGTTGTAGACGCTC 60.154 63.158 0.00 0.00 33.66 5.03
4285 4538 1.593296 GAGGTCCGGTTGTAGACGCT 61.593 60.000 0.00 0.00 33.66 5.07
4286 4539 1.153881 GAGGTCCGGTTGTAGACGC 60.154 63.158 0.00 0.00 33.66 5.19
4287 4540 0.450983 GAGAGGTCCGGTTGTAGACG 59.549 60.000 0.00 0.00 33.66 4.18
4288 4541 1.542492 TGAGAGGTCCGGTTGTAGAC 58.458 55.000 0.00 0.00 0.00 2.59
4289 4542 2.297698 TTGAGAGGTCCGGTTGTAGA 57.702 50.000 0.00 0.00 0.00 2.59
4290 4543 2.612221 GGTTTGAGAGGTCCGGTTGTAG 60.612 54.545 0.00 0.00 0.00 2.74
4291 4544 1.345415 GGTTTGAGAGGTCCGGTTGTA 59.655 52.381 0.00 0.00 0.00 2.41
4292 4545 0.108019 GGTTTGAGAGGTCCGGTTGT 59.892 55.000 0.00 0.00 0.00 3.32
4293 4546 0.605589 GGGTTTGAGAGGTCCGGTTG 60.606 60.000 0.00 0.00 0.00 3.77
4294 4547 1.759236 GGGTTTGAGAGGTCCGGTT 59.241 57.895 0.00 0.00 0.00 4.44
4295 4548 2.580601 CGGGTTTGAGAGGTCCGGT 61.581 63.158 0.00 0.00 37.35 5.28
4296 4549 2.264794 CGGGTTTGAGAGGTCCGG 59.735 66.667 0.00 0.00 37.35 5.14
4297 4550 2.434359 GCGGGTTTGAGAGGTCCG 60.434 66.667 0.00 0.00 43.13 4.79
4298 4551 2.046217 GGCGGGTTTGAGAGGTCC 60.046 66.667 0.00 0.00 0.00 4.46
4299 4552 0.611714 TAAGGCGGGTTTGAGAGGTC 59.388 55.000 0.00 0.00 0.00 3.85
4300 4553 1.286248 ATAAGGCGGGTTTGAGAGGT 58.714 50.000 0.00 0.00 0.00 3.85
4301 4554 2.802057 CGTATAAGGCGGGTTTGAGAGG 60.802 54.545 0.00 0.00 0.00 3.69
4302 4555 2.159142 ACGTATAAGGCGGGTTTGAGAG 60.159 50.000 0.00 0.00 0.00 3.20
4303 4556 1.826720 ACGTATAAGGCGGGTTTGAGA 59.173 47.619 0.00 0.00 0.00 3.27
4304 4557 2.159142 AGACGTATAAGGCGGGTTTGAG 60.159 50.000 0.00 0.00 0.00 3.02
4305 4558 1.826720 AGACGTATAAGGCGGGTTTGA 59.173 47.619 0.00 0.00 0.00 2.69
4306 4559 1.931172 CAGACGTATAAGGCGGGTTTG 59.069 52.381 0.00 0.00 0.00 2.93
4307 4560 1.134610 CCAGACGTATAAGGCGGGTTT 60.135 52.381 2.53 0.00 0.00 3.27
4308 4561 0.462789 CCAGACGTATAAGGCGGGTT 59.537 55.000 2.53 0.00 0.00 4.11
4309 4562 1.397390 CCCAGACGTATAAGGCGGGT 61.397 60.000 9.63 0.00 0.00 5.28
4310 4563 1.366366 CCCAGACGTATAAGGCGGG 59.634 63.158 3.70 3.70 0.00 6.13
4311 4564 1.300697 GCCCAGACGTATAAGGCGG 60.301 63.158 7.56 0.00 33.18 6.13
4312 4565 4.338327 GCCCAGACGTATAAGGCG 57.662 61.111 7.56 0.00 33.18 5.52
4313 4566 1.300697 CCGCCCAGACGTATAAGGC 60.301 63.158 12.22 12.22 40.33 4.35
4314 4567 1.366366 CCCGCCCAGACGTATAAGG 59.634 63.158 0.00 0.00 0.00 2.69
4315 4568 1.300697 GCCCGCCCAGACGTATAAG 60.301 63.158 0.00 0.00 0.00 1.73
4316 4569 2.799452 GGCCCGCCCAGACGTATAA 61.799 63.158 0.00 0.00 0.00 0.98
4317 4570 3.228759 GGCCCGCCCAGACGTATA 61.229 66.667 0.00 0.00 0.00 1.47
4332 4585 2.973316 AAAAATCGTGACCGGCGGC 61.973 57.895 28.71 19.42 33.95 6.53
4333 4586 3.259930 AAAAATCGTGACCGGCGG 58.740 55.556 27.06 27.06 33.95 6.13
4347 4600 0.469144 GGGCCTGTCTGGGTCAAAAA 60.469 55.000 0.84 0.00 36.00 1.94
4348 4601 1.152830 GGGCCTGTCTGGGTCAAAA 59.847 57.895 0.84 0.00 36.00 2.44
4349 4602 2.840753 GGGGCCTGTCTGGGTCAAA 61.841 63.158 0.84 0.00 36.00 2.69
4350 4603 3.256960 GGGGCCTGTCTGGGTCAA 61.257 66.667 0.84 0.00 36.00 3.18
4351 4604 4.270153 AGGGGCCTGTCTGGGTCA 62.270 66.667 0.84 0.00 36.00 4.02
4352 4605 3.403558 GAGGGGCCTGTCTGGGTC 61.404 72.222 0.84 0.00 36.00 4.46
4353 4606 3.810687 TTGAGGGGCCTGTCTGGGT 62.811 63.158 0.84 0.00 36.00 4.51
4354 4607 2.538141 TTTGAGGGGCCTGTCTGGG 61.538 63.158 0.84 0.00 36.00 4.45
4355 4608 1.303643 GTTTGAGGGGCCTGTCTGG 60.304 63.158 0.84 0.00 39.35 3.86
4356 4609 1.672356 CGTTTGAGGGGCCTGTCTG 60.672 63.158 0.84 0.00 0.00 3.51
4357 4610 2.113243 GACGTTTGAGGGGCCTGTCT 62.113 60.000 0.84 0.00 0.00 3.41
4358 4611 1.671379 GACGTTTGAGGGGCCTGTC 60.671 63.158 0.84 0.87 0.00 3.51
4359 4612 2.430367 GACGTTTGAGGGGCCTGT 59.570 61.111 0.84 0.00 0.00 4.00
4360 4613 2.359975 GGACGTTTGAGGGGCCTG 60.360 66.667 0.84 0.00 0.00 4.85
4361 4614 4.016706 CGGACGTTTGAGGGGCCT 62.017 66.667 0.84 0.00 0.00 5.19
4365 4618 4.016706 AGCCCGGACGTTTGAGGG 62.017 66.667 0.73 12.40 46.44 4.30
4366 4619 2.742372 CAGCCCGGACGTTTGAGG 60.742 66.667 0.73 0.00 0.00 3.86
4367 4620 2.027625 GTCAGCCCGGACGTTTGAG 61.028 63.158 0.73 0.00 0.00 3.02
4368 4621 2.029964 GTCAGCCCGGACGTTTGA 59.970 61.111 0.73 0.00 0.00 2.69
4369 4622 3.047877 GGTCAGCCCGGACGTTTG 61.048 66.667 0.73 0.00 38.70 2.93
4392 4645 0.488668 ATTTGGGCTGGATATGGGGG 59.511 55.000 0.00 0.00 0.00 5.40
4393 4646 3.763557 ATATTTGGGCTGGATATGGGG 57.236 47.619 0.00 0.00 0.00 4.96
4394 4647 4.386761 CCCTATATTTGGGCTGGATATGGG 60.387 50.000 1.19 8.71 37.99 4.00
4395 4648 4.796606 CCCTATATTTGGGCTGGATATGG 58.203 47.826 1.19 0.00 37.99 2.74
4406 4659 4.041691 CCCCTATATCCGCCCTATATTTGG 59.958 50.000 0.00 0.00 0.00 3.28
4407 4660 4.505039 GCCCCTATATCCGCCCTATATTTG 60.505 50.000 0.00 0.00 0.00 2.32
4408 4661 3.651423 GCCCCTATATCCGCCCTATATTT 59.349 47.826 0.00 0.00 0.00 1.40
4409 4662 3.248888 GCCCCTATATCCGCCCTATATT 58.751 50.000 0.00 0.00 0.00 1.28
4410 4663 2.822006 CGCCCCTATATCCGCCCTATAT 60.822 54.545 0.00 0.00 0.00 0.86
4411 4664 1.479942 CGCCCCTATATCCGCCCTATA 60.480 57.143 0.00 0.00 0.00 1.31
4412 4665 0.759436 CGCCCCTATATCCGCCCTAT 60.759 60.000 0.00 0.00 0.00 2.57
4413 4666 1.380785 CGCCCCTATATCCGCCCTA 60.381 63.158 0.00 0.00 0.00 3.53
4414 4667 2.683933 CGCCCCTATATCCGCCCT 60.684 66.667 0.00 0.00 0.00 5.19
4415 4668 4.468689 GCGCCCCTATATCCGCCC 62.469 72.222 0.00 0.00 40.51 6.13
4416 4669 3.372554 GAGCGCCCCTATATCCGCC 62.373 68.421 2.29 0.00 46.90 6.13
4417 4670 2.184579 GAGCGCCCCTATATCCGC 59.815 66.667 2.29 0.00 46.14 5.54
4418 4671 2.490217 CGAGCGCCCCTATATCCG 59.510 66.667 2.29 0.00 0.00 4.18
4419 4672 2.722201 CCCGAGCGCCCCTATATCC 61.722 68.421 2.29 0.00 0.00 2.59
4420 4673 2.893398 CCCGAGCGCCCCTATATC 59.107 66.667 2.29 0.00 0.00 1.63
4421 4674 3.391382 GCCCGAGCGCCCCTATAT 61.391 66.667 2.29 0.00 0.00 0.86
4422 4675 4.926162 TGCCCGAGCGCCCCTATA 62.926 66.667 2.29 0.00 44.31 1.31
4437 4690 3.857854 CTGATGTGGCGAGCGTGC 61.858 66.667 0.00 0.00 0.00 5.34
4438 4691 2.125952 TCTGATGTGGCGAGCGTG 60.126 61.111 0.00 0.00 0.00 5.34
4439 4692 2.125912 GTCTGATGTGGCGAGCGT 60.126 61.111 0.00 0.00 0.00 5.07
4440 4693 2.887568 GGTCTGATGTGGCGAGCG 60.888 66.667 0.00 0.00 0.00 5.03
4441 4694 2.512515 GGGTCTGATGTGGCGAGC 60.513 66.667 0.00 0.00 0.00 5.03
4442 4695 2.202797 CGGGTCTGATGTGGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
4443 4696 2.678580 TCGGGTCTGATGTGGCGA 60.679 61.111 0.00 0.00 0.00 5.54
4444 4697 2.509336 GTCGGGTCTGATGTGGCG 60.509 66.667 0.00 0.00 0.00 5.69
4445 4698 1.448540 CTGTCGGGTCTGATGTGGC 60.449 63.158 0.00 0.00 0.00 5.01
4446 4699 1.448540 GCTGTCGGGTCTGATGTGG 60.449 63.158 0.00 0.00 0.00 4.17
4447 4700 1.448540 GGCTGTCGGGTCTGATGTG 60.449 63.158 0.00 0.00 0.00 3.21
4448 4701 2.660064 GGGCTGTCGGGTCTGATGT 61.660 63.158 0.00 0.00 0.00 3.06
4449 4702 2.187946 GGGCTGTCGGGTCTGATG 59.812 66.667 0.00 0.00 0.00 3.07
4450 4703 3.461773 CGGGCTGTCGGGTCTGAT 61.462 66.667 0.00 0.00 0.00 2.90
4451 4704 4.671590 TCGGGCTGTCGGGTCTGA 62.672 66.667 0.00 0.00 0.00 3.27
4452 4705 4.436998 GTCGGGCTGTCGGGTCTG 62.437 72.222 0.00 0.00 0.00 3.51
4453 4706 4.680537 AGTCGGGCTGTCGGGTCT 62.681 66.667 0.00 0.00 0.00 3.85
4454 4707 4.436998 CAGTCGGGCTGTCGGGTC 62.437 72.222 0.34 0.00 40.27 4.46
4455 4708 4.988716 TCAGTCGGGCTGTCGGGT 62.989 66.667 9.76 0.00 45.23 5.28
4456 4709 3.461773 ATCAGTCGGGCTGTCGGG 61.462 66.667 9.76 0.00 45.23 5.14
4457 4710 1.663379 TACATCAGTCGGGCTGTCGG 61.663 60.000 9.76 3.21 45.23 4.79
4458 4711 0.248661 CTACATCAGTCGGGCTGTCG 60.249 60.000 9.76 4.60 45.23 4.35
4459 4712 0.103208 CCTACATCAGTCGGGCTGTC 59.897 60.000 9.76 0.00 45.23 3.51
4460 4713 1.330655 CCCTACATCAGTCGGGCTGT 61.331 60.000 9.76 0.00 43.06 4.40
4461 4714 1.443407 CCCTACATCAGTCGGGCTG 59.557 63.158 2.46 2.46 43.06 4.85
4462 4715 3.956377 CCCTACATCAGTCGGGCT 58.044 61.111 0.00 0.00 43.06 5.19
4465 4718 1.414158 ATCCACCCTACATCAGTCGG 58.586 55.000 0.00 0.00 0.00 4.79
4466 4719 2.296471 GGTATCCACCCTACATCAGTCG 59.704 54.545 0.00 0.00 39.11 4.18
4478 4731 0.761702 TCGGCCTTAGGGTATCCACC 60.762 60.000 0.00 0.00 44.96 4.61
4479 4732 1.275573 GATCGGCCTTAGGGTATCCAC 59.724 57.143 0.00 0.00 34.83 4.02
4480 4733 1.149288 AGATCGGCCTTAGGGTATCCA 59.851 52.381 0.00 0.00 34.83 3.41
4481 4734 1.939980 AGATCGGCCTTAGGGTATCC 58.060 55.000 0.00 0.00 34.45 2.59
4482 4735 3.323979 TGAAAGATCGGCCTTAGGGTATC 59.676 47.826 0.00 0.00 34.45 2.24
4483 4736 3.071167 GTGAAAGATCGGCCTTAGGGTAT 59.929 47.826 0.00 0.00 34.45 2.73
4484 4737 2.433239 GTGAAAGATCGGCCTTAGGGTA 59.567 50.000 0.00 0.00 34.45 3.69
4485 4738 1.209747 GTGAAAGATCGGCCTTAGGGT 59.790 52.381 0.00 0.00 34.45 4.34
4486 4739 1.806623 CGTGAAAGATCGGCCTTAGGG 60.807 57.143 0.00 0.00 0.00 3.53
4487 4740 1.136305 TCGTGAAAGATCGGCCTTAGG 59.864 52.381 0.00 0.00 0.00 2.69
4488 4741 2.579207 TCGTGAAAGATCGGCCTTAG 57.421 50.000 0.00 0.00 0.00 2.18
4489 4742 3.322211 TTTCGTGAAAGATCGGCCTTA 57.678 42.857 0.00 0.00 0.00 2.69
4490 4743 2.178912 TTTCGTGAAAGATCGGCCTT 57.821 45.000 0.00 0.00 0.00 4.35
4491 4744 2.009774 CATTTCGTGAAAGATCGGCCT 58.990 47.619 0.00 0.00 33.32 5.19
4492 4745 1.064060 CCATTTCGTGAAAGATCGGCC 59.936 52.381 0.00 0.00 33.32 6.13
4493 4746 2.006888 TCCATTTCGTGAAAGATCGGC 58.993 47.619 1.20 0.00 33.32 5.54
4494 4747 2.029244 CGTCCATTTCGTGAAAGATCGG 59.971 50.000 1.20 0.14 33.32 4.18
4495 4748 2.029244 CCGTCCATTTCGTGAAAGATCG 59.971 50.000 1.20 3.91 33.32 3.69
4496 4749 2.351726 CCCGTCCATTTCGTGAAAGATC 59.648 50.000 1.20 0.00 33.32 2.75
4497 4750 2.027561 TCCCGTCCATTTCGTGAAAGAT 60.028 45.455 1.20 0.00 33.32 2.40
4498 4751 1.345089 TCCCGTCCATTTCGTGAAAGA 59.655 47.619 1.20 0.00 33.32 2.52
4499 4752 1.803334 TCCCGTCCATTTCGTGAAAG 58.197 50.000 1.20 0.00 33.32 2.62
4500 4753 2.352388 GATCCCGTCCATTTCGTGAAA 58.648 47.619 0.00 0.00 34.46 2.69
4501 4754 1.406341 GGATCCCGTCCATTTCGTGAA 60.406 52.381 0.00 0.00 46.96 3.18
4502 4755 0.177141 GGATCCCGTCCATTTCGTGA 59.823 55.000 0.00 0.00 46.96 4.35
4503 4756 2.690326 GGATCCCGTCCATTTCGTG 58.310 57.895 0.00 0.00 46.96 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.