Multiple sequence alignment - TraesCS2B01G274200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G274200 chr2B 100.000 4187 0 0 1 4187 377097837 377102023 0.000000e+00 7733.0
1 TraesCS2B01G274200 chr2B 93.730 319 18 1 1986 2302 377099339 377099657 1.050000e-130 477.0
2 TraesCS2B01G274200 chr2B 93.730 319 18 1 1503 1821 377099822 377100138 1.050000e-130 477.0
3 TraesCS2B01G274200 chr2B 89.189 370 39 1 1 369 664504644 664504275 1.060000e-125 460.0
4 TraesCS2B01G274200 chr2B 96.774 62 2 0 2318 2379 377099763 377099824 2.060000e-18 104.0
5 TraesCS2B01G274200 chr2B 96.774 62 2 0 1927 1988 377100154 377100215 2.060000e-18 104.0
6 TraesCS2B01G274200 chr2B 89.655 58 2 2 372 429 789606662 789606609 2.090000e-08 71.3
7 TraesCS2B01G274200 chr2D 94.272 2898 58 26 606 3444 200773471 200776319 0.000000e+00 4333.0
8 TraesCS2B01G274200 chr2D 94.647 411 20 2 3739 4147 200776575 200776985 1.640000e-178 636.0
9 TraesCS2B01G274200 chr2D 93.417 319 18 2 1986 2302 200774366 200774683 1.760000e-128 470.0
10 TraesCS2B01G274200 chr2D 90.808 359 17 5 1503 1861 200774850 200775192 2.280000e-127 466.0
11 TraesCS2B01G274200 chr2D 84.302 172 8 4 424 578 200773302 200773471 2.610000e-32 150.0
12 TraesCS2B01G274200 chr2D 83.007 153 7 5 3471 3604 200776403 200776555 2.040000e-23 121.0
13 TraesCS2B01G274200 chr2D 96.774 62 2 0 2318 2379 200774791 200774852 2.060000e-18 104.0
14 TraesCS2B01G274200 chr2D 96.774 62 2 0 1927 1988 200775192 200775253 2.060000e-18 104.0
15 TraesCS2B01G274200 chr2A 89.991 1059 56 24 506 1557 221199135 221200150 0.000000e+00 1323.0
16 TraesCS2B01G274200 chr2A 93.315 733 23 9 2318 3032 221200566 221201290 0.000000e+00 1059.0
17 TraesCS2B01G274200 chr2A 95.444 417 3 5 3029 3442 221201412 221201815 0.000000e+00 651.0
18 TraesCS2B01G274200 chr2A 92.490 253 18 1 1737 1988 221200375 221200627 1.110000e-95 361.0
19 TraesCS2B01G274200 chr2A 89.506 162 7 6 1554 1714 221200230 221200382 3.300000e-46 196.0
20 TraesCS2B01G274200 chr2A 84.568 162 13 8 2037 2195 221200230 221200382 2.610000e-32 150.0
21 TraesCS2B01G274200 chr2A 95.349 86 3 1 2218 2302 221200375 221200460 7.300000e-28 135.0
22 TraesCS2B01G274200 chr2A 93.846 65 2 1 4083 4147 221202320 221202382 3.450000e-16 97.1
23 TraesCS2B01G274200 chr2A 96.364 55 2 0 1986 2040 221200096 221200150 1.600000e-14 91.6
24 TraesCS2B01G274200 chr7A 89.757 371 35 2 1 369 210693310 210692941 4.900000e-129 472.0
25 TraesCS2B01G274200 chr5D 88.235 374 39 3 1 369 124510592 124510965 3.840000e-120 442.0
26 TraesCS2B01G274200 chr7D 87.798 377 39 6 1 374 142192863 142193235 6.430000e-118 435.0
27 TraesCS2B01G274200 chr6B 86.856 388 41 7 1 383 703040514 703040896 3.870000e-115 425.0
28 TraesCS2B01G274200 chr6B 86.856 388 41 7 1 383 703136698 703137080 3.870000e-115 425.0
29 TraesCS2B01G274200 chr6B 86.305 387 44 7 1 383 703090144 703090525 3.010000e-111 412.0
30 TraesCS2B01G274200 chr6B 98.305 59 1 0 2382 2440 289381851 289381909 2.060000e-18 104.0
31 TraesCS2B01G274200 chr6B 100.000 45 0 0 993 1037 289381807 289381851 2.680000e-12 84.2
32 TraesCS2B01G274200 chr6B 94.444 54 3 0 2518 2571 289381903 289381956 2.680000e-12 84.2
33 TraesCS2B01G274200 chr6B 100.000 43 0 0 369 411 199738795 199738753 3.470000e-11 80.5
34 TraesCS2B01G274200 chr3A 87.399 373 41 3 1 371 57724902 57725270 1.390000e-114 424.0
35 TraesCS2B01G274200 chr4D 87.131 373 43 3 1 371 488326946 488327315 6.470000e-113 418.0
36 TraesCS2B01G274200 chr1B 96.721 61 2 0 2380 2440 439169491 439169551 7.410000e-18 102.0
37 TraesCS2B01G274200 chr1B 96.721 61 2 0 2518 2578 439169545 439169605 7.410000e-18 102.0
38 TraesCS2B01G274200 chr1B 92.593 54 3 1 358 411 211118165 211118217 4.490000e-10 76.8
39 TraesCS2B01G274200 chr1B 100.000 40 0 0 993 1032 439169449 439169488 1.610000e-09 75.0
40 TraesCS2B01G274200 chr1D 96.078 51 1 1 369 418 296619138 296619188 9.650000e-12 82.4
41 TraesCS2B01G274200 chr1D 91.228 57 4 1 358 414 137147680 137147625 4.490000e-10 76.8
42 TraesCS2B01G274200 chr1A 100.000 44 0 0 369 412 357785597 357785640 9.650000e-12 82.4
43 TraesCS2B01G274200 chr1A 88.235 68 1 5 369 429 317674053 317674120 1.610000e-09 75.0
44 TraesCS2B01G274200 chr4A 89.231 65 0 5 372 429 146886598 146886534 1.610000e-09 75.0
45 TraesCS2B01G274200 chr3B 95.349 43 2 0 369 411 513715097 513715139 7.510000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G274200 chr2B 377097837 377102023 4186 False 1779.000000 7733 96.201600 1 4187 5 chr2B.!!$F1 4186
1 TraesCS2B01G274200 chr2D 200773302 200776985 3683 False 798.000000 4333 91.750125 424 4147 8 chr2D.!!$F1 3723
2 TraesCS2B01G274200 chr2A 221199135 221202382 3247 False 451.522222 1323 92.319222 506 4147 9 chr2A.!!$F1 3641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.098200 TTCTCGACATGTAGACGGCG 59.902 55.0 4.80 4.8 36.09 6.46 F
1071 1090 0.035056 CTTGCCCCTCACCCTGTTAG 60.035 60.0 0.00 0.0 0.00 2.34 F
1343 1362 1.144969 GTCGGCGTGTTTCAGATTGA 58.855 50.0 6.85 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1309 1328 1.296392 CGACAACCATCTGCCCTCA 59.704 57.895 0.0 0.0 0.0 3.86 R
2169 2283 1.270839 GCACCAGTAAGACAGAAGGCA 60.271 52.381 0.0 0.0 0.0 4.75 R
3218 3512 0.948623 CGTCGCAACCTGAACATCCA 60.949 55.000 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.680786 CAGGGACGTCGCAGGTGA 61.681 66.667 31.03 0.00 0.00 4.02
18 19 3.374402 AGGGACGTCGCAGGTGAG 61.374 66.667 31.03 0.00 0.00 3.51
19 20 4.436998 GGGACGTCGCAGGTGAGG 62.437 72.222 25.93 1.38 0.00 3.86
64 65 2.572284 GCGACTACACCCGCTTCT 59.428 61.111 0.00 0.00 46.96 2.85
65 66 1.805254 GCGACTACACCCGCTTCTA 59.195 57.895 0.00 0.00 46.96 2.10
66 67 0.525029 GCGACTACACCCGCTTCTAC 60.525 60.000 0.00 0.00 46.96 2.59
67 68 0.806868 CGACTACACCCGCTTCTACA 59.193 55.000 0.00 0.00 0.00 2.74
68 69 1.404391 CGACTACACCCGCTTCTACAT 59.596 52.381 0.00 0.00 0.00 2.29
69 70 2.794981 CGACTACACCCGCTTCTACATG 60.795 54.545 0.00 0.00 0.00 3.21
70 71 1.134788 ACTACACCCGCTTCTACATGC 60.135 52.381 0.00 0.00 0.00 4.06
71 72 1.137086 CTACACCCGCTTCTACATGCT 59.863 52.381 0.00 0.00 0.00 3.79
72 73 0.324943 ACACCCGCTTCTACATGCTT 59.675 50.000 0.00 0.00 0.00 3.91
73 74 1.009829 CACCCGCTTCTACATGCTTC 58.990 55.000 0.00 0.00 0.00 3.86
74 75 0.905357 ACCCGCTTCTACATGCTTCT 59.095 50.000 0.00 0.00 0.00 2.85
75 76 1.134670 ACCCGCTTCTACATGCTTCTC 60.135 52.381 0.00 0.00 0.00 2.87
76 77 1.203928 CCGCTTCTACATGCTTCTCG 58.796 55.000 0.00 0.00 0.00 4.04
77 78 1.202302 CCGCTTCTACATGCTTCTCGA 60.202 52.381 0.00 0.00 0.00 4.04
78 79 1.849219 CGCTTCTACATGCTTCTCGAC 59.151 52.381 0.00 0.00 0.00 4.20
79 80 2.732282 CGCTTCTACATGCTTCTCGACA 60.732 50.000 0.00 0.00 0.00 4.35
80 81 3.452474 GCTTCTACATGCTTCTCGACAT 58.548 45.455 0.00 0.00 0.00 3.06
87 88 2.544480 TGCTTCTCGACATGTAGACG 57.456 50.000 4.35 1.64 36.74 4.18
88 89 1.132453 TGCTTCTCGACATGTAGACGG 59.868 52.381 4.35 0.00 36.09 4.79
89 90 1.828832 CTTCTCGACATGTAGACGGC 58.171 55.000 4.35 0.00 36.09 5.68
90 91 0.098200 TTCTCGACATGTAGACGGCG 59.902 55.000 4.80 4.80 36.09 6.46
91 92 1.298413 CTCGACATGTAGACGGCGG 60.298 63.158 13.24 0.00 36.09 6.13
92 93 2.954868 CGACATGTAGACGGCGGC 60.955 66.667 13.24 8.92 0.00 6.53
93 94 2.954868 GACATGTAGACGGCGGCG 60.955 66.667 31.06 31.06 0.00 6.46
94 95 4.508128 ACATGTAGACGGCGGCGG 62.508 66.667 35.05 17.60 0.00 6.13
123 124 3.900892 GCGGCAGCGTCTAGGCTA 61.901 66.667 0.00 0.00 42.53 3.93
124 125 3.043419 CGGCAGCGTCTAGGCTAT 58.957 61.111 0.00 0.00 42.53 2.97
125 126 1.364171 CGGCAGCGTCTAGGCTATT 59.636 57.895 0.00 0.00 42.53 1.73
126 127 0.249489 CGGCAGCGTCTAGGCTATTT 60.249 55.000 0.00 0.00 42.53 1.40
127 128 1.000607 CGGCAGCGTCTAGGCTATTTA 60.001 52.381 0.00 0.00 42.53 1.40
128 129 2.678324 GGCAGCGTCTAGGCTATTTAG 58.322 52.381 0.00 0.00 42.53 1.85
129 130 2.036089 GGCAGCGTCTAGGCTATTTAGT 59.964 50.000 0.00 0.00 42.53 2.24
130 131 3.492829 GGCAGCGTCTAGGCTATTTAGTT 60.493 47.826 0.00 0.00 42.53 2.24
131 132 4.261909 GGCAGCGTCTAGGCTATTTAGTTA 60.262 45.833 0.00 0.00 42.53 2.24
132 133 4.918583 GCAGCGTCTAGGCTATTTAGTTAG 59.081 45.833 0.00 0.00 42.53 2.34
133 134 5.507650 GCAGCGTCTAGGCTATTTAGTTAGT 60.508 44.000 0.00 0.00 42.53 2.24
134 135 6.505272 CAGCGTCTAGGCTATTTAGTTAGTT 58.495 40.000 0.00 0.00 42.53 2.24
135 136 6.979238 CAGCGTCTAGGCTATTTAGTTAGTTT 59.021 38.462 0.00 0.00 42.53 2.66
136 137 7.491696 CAGCGTCTAGGCTATTTAGTTAGTTTT 59.508 37.037 0.00 0.00 42.53 2.43
137 138 7.491696 AGCGTCTAGGCTATTTAGTTAGTTTTG 59.508 37.037 0.00 0.00 42.62 2.44
138 139 7.490402 GCGTCTAGGCTATTTAGTTAGTTTTGA 59.510 37.037 0.00 0.00 0.00 2.69
139 140 9.362539 CGTCTAGGCTATTTAGTTAGTTTTGAA 57.637 33.333 0.00 0.00 0.00 2.69
152 153 8.220755 AGTTAGTTTTGAAGTTAGTTCATGCA 57.779 30.769 3.11 0.00 44.89 3.96
153 154 8.850156 AGTTAGTTTTGAAGTTAGTTCATGCAT 58.150 29.630 3.11 0.00 44.89 3.96
204 205 4.339872 AAAAATGGCTGAGTTCATGCAA 57.660 36.364 0.00 0.00 0.00 4.08
205 206 4.339872 AAAATGGCTGAGTTCATGCAAA 57.660 36.364 0.00 0.00 0.00 3.68
206 207 4.339872 AAATGGCTGAGTTCATGCAAAA 57.660 36.364 0.00 0.00 0.00 2.44
207 208 4.339872 AATGGCTGAGTTCATGCAAAAA 57.660 36.364 0.00 0.00 0.00 1.94
208 209 4.546829 ATGGCTGAGTTCATGCAAAAAT 57.453 36.364 0.00 0.00 0.00 1.82
209 210 3.916761 TGGCTGAGTTCATGCAAAAATC 58.083 40.909 0.00 0.00 0.00 2.17
210 211 3.321396 TGGCTGAGTTCATGCAAAAATCA 59.679 39.130 12.76 12.76 0.00 2.57
211 212 3.676646 GGCTGAGTTCATGCAAAAATCAC 59.323 43.478 10.23 8.17 0.00 3.06
212 213 3.676646 GCTGAGTTCATGCAAAAATCACC 59.323 43.478 10.23 2.83 0.00 4.02
213 214 3.899734 TGAGTTCATGCAAAAATCACCG 58.100 40.909 10.23 0.00 0.00 4.94
214 215 3.567585 TGAGTTCATGCAAAAATCACCGA 59.432 39.130 10.23 0.00 0.00 4.69
215 216 4.161333 GAGTTCATGCAAAAATCACCGAG 58.839 43.478 7.52 0.00 0.00 4.63
216 217 3.569701 AGTTCATGCAAAAATCACCGAGT 59.430 39.130 0.00 0.00 0.00 4.18
217 218 4.037923 AGTTCATGCAAAAATCACCGAGTT 59.962 37.500 0.00 0.00 0.00 3.01
218 219 4.582701 TCATGCAAAAATCACCGAGTTT 57.417 36.364 0.00 0.00 31.06 2.66
219 220 4.297510 TCATGCAAAAATCACCGAGTTTG 58.702 39.130 0.00 0.00 30.27 2.93
220 221 2.468831 TGCAAAAATCACCGAGTTTGC 58.531 42.857 15.65 15.65 30.27 3.68
221 222 2.159184 TGCAAAAATCACCGAGTTTGCA 60.159 40.909 18.97 18.97 34.37 4.08
222 223 2.863137 GCAAAAATCACCGAGTTTGCAA 59.137 40.909 16.81 0.00 30.27 4.08
223 224 3.308323 GCAAAAATCACCGAGTTTGCAAA 59.692 39.130 8.05 8.05 30.27 3.68
224 225 4.201763 GCAAAAATCACCGAGTTTGCAAAA 60.202 37.500 14.67 0.00 30.27 2.44
225 226 5.672321 GCAAAAATCACCGAGTTTGCAAAAA 60.672 36.000 14.67 0.00 30.27 1.94
245 246 2.309898 AATTGAAACGAACTTCGCCG 57.690 45.000 11.15 0.00 45.12 6.46
246 247 1.504359 ATTGAAACGAACTTCGCCGA 58.496 45.000 11.15 1.83 45.12 5.54
247 248 1.288350 TTGAAACGAACTTCGCCGAA 58.712 45.000 11.15 0.00 45.12 4.30
248 249 0.578211 TGAAACGAACTTCGCCGAAC 59.422 50.000 11.15 0.38 45.12 3.95
249 250 0.110956 GAAACGAACTTCGCCGAACC 60.111 55.000 11.15 0.00 45.12 3.62
250 251 1.501337 AAACGAACTTCGCCGAACCC 61.501 55.000 11.15 0.00 45.12 4.11
251 252 3.475774 CGAACTTCGCCGAACCCG 61.476 66.667 0.00 0.00 31.14 5.28
252 253 3.785499 GAACTTCGCCGAACCCGC 61.785 66.667 0.00 0.00 0.00 6.13
277 278 3.936203 GTGGGCACGTGACTGGGA 61.936 66.667 23.08 0.00 0.00 4.37
278 279 3.625897 TGGGCACGTGACTGGGAG 61.626 66.667 23.08 0.00 0.00 4.30
281 282 4.357947 GCACGTGACTGGGAGCGA 62.358 66.667 22.23 0.00 0.00 4.93
282 283 2.338620 CACGTGACTGGGAGCGAA 59.661 61.111 10.90 0.00 0.00 4.70
283 284 2.022129 CACGTGACTGGGAGCGAAC 61.022 63.158 10.90 0.00 0.00 3.95
284 285 2.432628 CGTGACTGGGAGCGAACC 60.433 66.667 0.00 0.00 0.00 3.62
285 286 2.432628 GTGACTGGGAGCGAACCG 60.433 66.667 0.00 0.00 0.00 4.44
286 287 2.599281 TGACTGGGAGCGAACCGA 60.599 61.111 0.00 0.00 0.00 4.69
287 288 2.204461 TGACTGGGAGCGAACCGAA 61.204 57.895 0.00 0.00 0.00 4.30
288 289 1.737008 GACTGGGAGCGAACCGAAC 60.737 63.158 0.00 0.00 0.00 3.95
289 290 2.434359 CTGGGAGCGAACCGAACC 60.434 66.667 0.00 0.00 0.00 3.62
290 291 3.952628 CTGGGAGCGAACCGAACCC 62.953 68.421 11.95 11.95 41.33 4.11
291 292 4.772687 GGGAGCGAACCGAACCCC 62.773 72.222 9.06 0.00 37.61 4.95
292 293 4.011517 GGAGCGAACCGAACCCCA 62.012 66.667 0.00 0.00 0.00 4.96
293 294 2.434359 GAGCGAACCGAACCCCAG 60.434 66.667 0.00 0.00 0.00 4.45
294 295 3.952628 GAGCGAACCGAACCCCAGG 62.953 68.421 0.00 0.00 0.00 4.45
296 297 3.315949 CGAACCGAACCCCAGGGA 61.316 66.667 7.25 0.00 38.96 4.20
297 298 2.886134 CGAACCGAACCCCAGGGAA 61.886 63.158 7.25 0.00 38.96 3.97
298 299 1.303074 GAACCGAACCCCAGGGAAC 60.303 63.158 7.25 1.84 38.96 3.62
299 300 3.186656 AACCGAACCCCAGGGAACG 62.187 63.158 7.25 13.61 38.96 3.95
300 301 3.315949 CCGAACCCCAGGGAACGA 61.316 66.667 20.89 0.00 38.60 3.85
301 302 2.666098 CCGAACCCCAGGGAACGAT 61.666 63.158 20.89 0.00 38.60 3.73
302 303 1.153429 CGAACCCCAGGGAACGATC 60.153 63.158 7.25 0.00 38.60 3.69
303 304 1.614241 CGAACCCCAGGGAACGATCT 61.614 60.000 7.25 0.00 38.60 2.75
304 305 1.492764 GAACCCCAGGGAACGATCTA 58.507 55.000 7.25 0.00 38.96 1.98
305 306 1.413077 GAACCCCAGGGAACGATCTAG 59.587 57.143 7.25 0.00 38.96 2.43
306 307 1.049289 ACCCCAGGGAACGATCTAGC 61.049 60.000 7.25 0.00 38.96 3.42
307 308 1.364171 CCCAGGGAACGATCTAGCG 59.636 63.158 0.00 0.00 37.29 4.26
308 309 1.300233 CCAGGGAACGATCTAGCGC 60.300 63.158 0.00 0.00 33.86 5.92
309 310 1.300233 CAGGGAACGATCTAGCGCC 60.300 63.158 2.29 0.00 33.86 6.53
310 311 2.354773 GGGAACGATCTAGCGCCG 60.355 66.667 2.29 1.74 33.86 6.46
311 312 2.354773 GGAACGATCTAGCGCCGG 60.355 66.667 2.29 0.00 33.86 6.13
312 313 2.412112 GAACGATCTAGCGCCGGT 59.588 61.111 2.29 0.00 33.86 5.28
313 314 1.226888 GAACGATCTAGCGCCGGTT 60.227 57.895 2.29 0.00 33.86 4.44
314 315 1.207377 GAACGATCTAGCGCCGGTTC 61.207 60.000 2.29 5.45 33.86 3.62
315 316 2.726180 CGATCTAGCGCCGGTTCG 60.726 66.667 2.29 9.91 0.00 3.95
333 334 2.998949 CCCCTAGGCCGCTCTTTT 59.001 61.111 2.05 0.00 0.00 2.27
334 335 1.303282 CCCCTAGGCCGCTCTTTTT 59.697 57.895 2.05 0.00 0.00 1.94
363 364 4.514577 CGGCGAACGGCTGGAGAT 62.515 66.667 17.49 0.00 44.68 2.75
364 365 2.892425 GGCGAACGGCTGGAGATG 60.892 66.667 13.15 0.00 42.94 2.90
365 366 3.567797 GCGAACGGCTGGAGATGC 61.568 66.667 0.00 0.00 39.11 3.91
366 367 2.185350 CGAACGGCTGGAGATGCT 59.815 61.111 0.00 0.00 0.00 3.79
367 368 1.880340 CGAACGGCTGGAGATGCTC 60.880 63.158 0.00 0.00 0.00 4.26
368 369 1.519719 GAACGGCTGGAGATGCTCT 59.480 57.895 0.00 0.00 0.00 4.09
369 370 0.747255 GAACGGCTGGAGATGCTCTA 59.253 55.000 0.00 0.00 0.00 2.43
370 371 1.137086 GAACGGCTGGAGATGCTCTAA 59.863 52.381 0.00 0.00 0.00 2.10
371 372 1.418334 ACGGCTGGAGATGCTCTAAT 58.582 50.000 0.00 0.00 0.00 1.73
372 373 2.598565 ACGGCTGGAGATGCTCTAATA 58.401 47.619 0.00 0.00 0.00 0.98
373 374 2.965831 ACGGCTGGAGATGCTCTAATAA 59.034 45.455 0.00 0.00 0.00 1.40
374 375 3.243907 ACGGCTGGAGATGCTCTAATAAC 60.244 47.826 0.00 0.00 0.00 1.89
375 376 3.006323 CGGCTGGAGATGCTCTAATAACT 59.994 47.826 0.00 0.00 0.00 2.24
376 377 4.502259 CGGCTGGAGATGCTCTAATAACTT 60.502 45.833 0.00 0.00 0.00 2.66
377 378 5.279006 CGGCTGGAGATGCTCTAATAACTTA 60.279 44.000 0.00 0.00 0.00 2.24
378 379 6.162777 GGCTGGAGATGCTCTAATAACTTAG 58.837 44.000 0.00 0.00 36.46 2.18
379 380 6.015010 GGCTGGAGATGCTCTAATAACTTAGA 60.015 42.308 0.00 0.00 40.81 2.10
380 381 6.866248 GCTGGAGATGCTCTAATAACTTAGAC 59.134 42.308 0.00 0.00 38.72 2.59
381 382 7.255801 GCTGGAGATGCTCTAATAACTTAGACT 60.256 40.741 0.00 0.00 38.72 3.24
382 383 9.290988 CTGGAGATGCTCTAATAACTTAGACTA 57.709 37.037 0.00 0.00 38.72 2.59
383 384 9.290988 TGGAGATGCTCTAATAACTTAGACTAG 57.709 37.037 0.00 0.00 38.72 2.57
384 385 9.292195 GGAGATGCTCTAATAACTTAGACTAGT 57.708 37.037 0.00 0.00 38.72 2.57
386 387 9.635404 AGATGCTCTAATAACTTAGACTAGTGT 57.365 33.333 0.00 0.00 38.72 3.55
387 388 9.887406 GATGCTCTAATAACTTAGACTAGTGTC 57.113 37.037 0.00 0.00 38.72 3.67
388 389 8.803397 TGCTCTAATAACTTAGACTAGTGTCA 57.197 34.615 0.00 0.00 45.20 3.58
389 390 9.409918 TGCTCTAATAACTTAGACTAGTGTCAT 57.590 33.333 0.00 0.00 45.20 3.06
396 397 9.920133 ATAACTTAGACTAGTGTCATATGCATG 57.080 33.333 10.16 0.00 45.20 4.06
397 398 7.588497 ACTTAGACTAGTGTCATATGCATGA 57.412 36.000 10.16 0.00 45.20 3.07
421 422 9.910267 TGACACTAGTATAAGTAACATAGACCA 57.090 33.333 0.00 0.00 0.00 4.02
423 424 8.848182 ACACTAGTATAAGTAACATAGACCAGC 58.152 37.037 0.00 0.00 0.00 4.85
424 425 8.298140 CACTAGTATAAGTAACATAGACCAGCC 58.702 40.741 0.00 0.00 0.00 4.85
425 426 8.226112 ACTAGTATAAGTAACATAGACCAGCCT 58.774 37.037 0.00 0.00 0.00 4.58
426 427 9.736414 CTAGTATAAGTAACATAGACCAGCCTA 57.264 37.037 0.00 0.00 0.00 3.93
431 432 1.132500 ACATAGACCAGCCTAAGCCC 58.868 55.000 0.00 0.00 41.25 5.19
473 474 2.328639 GCCGATCTCGAGACGACC 59.671 66.667 27.54 18.27 43.02 4.79
485 486 1.134367 GAGACGACCGATTCACATCCA 59.866 52.381 0.00 0.00 0.00 3.41
486 487 1.548719 AGACGACCGATTCACATCCAA 59.451 47.619 0.00 0.00 0.00 3.53
487 488 1.659098 GACGACCGATTCACATCCAAC 59.341 52.381 0.00 0.00 0.00 3.77
488 489 0.645355 CGACCGATTCACATCCAACG 59.355 55.000 0.00 0.00 0.00 4.10
489 490 1.734377 CGACCGATTCACATCCAACGA 60.734 52.381 0.00 0.00 0.00 3.85
490 491 2.550978 GACCGATTCACATCCAACGAT 58.449 47.619 0.00 0.00 0.00 3.73
491 492 2.936498 GACCGATTCACATCCAACGATT 59.064 45.455 0.00 0.00 0.00 3.34
492 493 4.116961 GACCGATTCACATCCAACGATTA 58.883 43.478 0.00 0.00 0.00 1.75
502 516 0.921347 CCAACGATTAGAGTTCGGCG 59.079 55.000 0.00 0.00 40.83 6.46
591 606 5.239963 ACGGAATTCAATACAAGTTCGGTTT 59.760 36.000 7.93 0.00 31.17 3.27
592 607 6.427547 ACGGAATTCAATACAAGTTCGGTTTA 59.572 34.615 7.93 0.00 31.17 2.01
839 857 1.032794 CCTCGATCAATCTCGTCCCA 58.967 55.000 0.00 0.00 39.62 4.37
940 959 1.615107 CGTCCGCTCGGTTTCTTGTC 61.615 60.000 8.28 0.00 36.47 3.18
1062 1081 1.925455 CCTTCTCCCTTGCCCCTCA 60.925 63.158 0.00 0.00 0.00 3.86
1071 1090 0.035056 CTTGCCCCTCACCCTGTTAG 60.035 60.000 0.00 0.00 0.00 2.34
1272 1291 4.151689 CGTGCTAATATGTGTTATTCCGGG 59.848 45.833 0.00 0.00 32.66 5.73
1273 1292 5.302360 GTGCTAATATGTGTTATTCCGGGA 58.698 41.667 0.00 0.00 32.66 5.14
1274 1293 5.761234 GTGCTAATATGTGTTATTCCGGGAA 59.239 40.000 12.67 12.67 32.66 3.97
1309 1328 6.016610 GTCCCATATGCCGTTGTTACATTATT 60.017 38.462 0.00 0.00 0.00 1.40
1343 1362 1.144969 GTCGGCGTGTTTCAGATTGA 58.855 50.000 6.85 0.00 0.00 2.57
1627 1734 8.081633 TGGATGCTTTTGTACAATTCTTGTTAG 58.918 33.333 9.56 0.00 42.22 2.34
1654 1761 9.965902 ATCAGGTTCATAAGATTCTGTTTTACT 57.034 29.630 0.00 0.00 0.00 2.24
1708 1815 2.699954 CGCCTTCTGTCTTATTGGTGT 58.300 47.619 0.00 0.00 0.00 4.16
1871 1981 3.549827 CGTTTTGCACTGGTTGATGCTTA 60.550 43.478 0.00 0.00 42.55 3.09
1964 2076 8.463930 TTCCAGTGTCAAGTTATTTTCATCTT 57.536 30.769 0.00 0.00 0.00 2.40
2095 2209 4.022068 CCTTGCTTTCTGGATGCTTTTGTA 60.022 41.667 0.00 0.00 0.00 2.41
2148 2262 9.933723 GATTCTGTTTTACTAGTTAGGTAACCA 57.066 33.333 0.00 0.00 36.88 3.67
2149 2263 9.939802 ATTCTGTTTTACTAGTTAGGTAACCAG 57.060 33.333 0.00 0.00 36.88 4.00
2169 2283 2.622942 AGCAATGTTGTGATCGTTTGGT 59.377 40.909 0.00 0.00 0.00 3.67
2183 2297 2.223377 CGTTTGGTGCCTTCTGTCTTAC 59.777 50.000 0.00 0.00 0.00 2.34
2251 2365 2.815503 AGTATTCCCCCGTTTTTGAACG 59.184 45.455 4.81 4.81 45.04 3.95
2268 2382 5.143376 TGAACGGACCTTAGGTTTAAGAG 57.857 43.478 4.99 0.00 38.88 2.85
2609 2751 7.776107 TCTTCTTCATCACTCGTATTCTGATT 58.224 34.615 0.00 0.00 0.00 2.57
2634 2776 4.857588 CAGATGAGCAGTTCTTTTCATTGC 59.142 41.667 0.00 0.00 30.85 3.56
2829 2976 7.596248 TCTTGAAATAATTTTCTTGTCTGCTGC 59.404 33.333 0.00 0.00 41.54 5.25
3218 3512 5.581605 CGCTGCCACTGTAAATAAATGAAT 58.418 37.500 0.00 0.00 0.00 2.57
3352 3648 7.287235 ACGGCCTGTAAAACTCTATCTATTACT 59.713 37.037 0.00 0.00 0.00 2.24
3353 3649 8.790718 CGGCCTGTAAAACTCTATCTATTACTA 58.209 37.037 0.00 0.00 0.00 1.82
3444 3740 0.324943 ATTAGTGGCAGCAGAACCGT 59.675 50.000 0.00 0.00 0.00 4.83
3445 3741 0.320421 TTAGTGGCAGCAGAACCGTC 60.320 55.000 0.00 0.00 0.00 4.79
3536 3908 3.775316 CCCTGAGGATTACACTTACACCT 59.225 47.826 0.00 0.00 33.47 4.00
3611 4102 2.738480 GTGACGTACCTGCCCACA 59.262 61.111 0.00 0.00 0.00 4.17
3612 4103 1.374252 GTGACGTACCTGCCCACAG 60.374 63.158 0.00 0.00 44.05 3.66
3625 4117 1.379443 CCACAGGCATGGACAGCAT 60.379 57.895 2.31 0.00 43.02 3.79
3640 4132 3.316821 CATGATGTGCTCCTCGCG 58.683 61.111 0.00 0.00 43.27 5.87
3641 4133 2.107750 ATGATGTGCTCCTCGCGG 59.892 61.111 6.13 0.00 43.27 6.46
3642 4134 2.426406 ATGATGTGCTCCTCGCGGA 61.426 57.895 6.13 0.00 43.27 5.54
3650 4142 4.373116 TCCTCGCGGAGTTGTGCC 62.373 66.667 6.13 0.00 33.30 5.01
3651 4143 4.379243 CCTCGCGGAGTTGTGCCT 62.379 66.667 6.13 0.00 0.00 4.75
3652 4144 2.811317 CTCGCGGAGTTGTGCCTC 60.811 66.667 6.13 0.00 0.00 4.70
3653 4145 3.288308 CTCGCGGAGTTGTGCCTCT 62.288 63.158 6.13 0.00 0.00 3.69
3654 4146 2.357517 CGCGGAGTTGTGCCTCTT 60.358 61.111 0.00 0.00 0.00 2.85
3655 4147 2.671177 CGCGGAGTTGTGCCTCTTG 61.671 63.158 0.00 0.00 0.00 3.02
3656 4148 2.970974 GCGGAGTTGTGCCTCTTGC 61.971 63.158 0.00 0.00 41.77 4.01
3657 4149 2.671177 CGGAGTTGTGCCTCTTGCG 61.671 63.158 0.00 0.00 45.60 4.85
3665 4157 4.704833 GCCTCTTGCGCAGGGTGA 62.705 66.667 20.24 11.36 0.00 4.02
3666 4158 2.435586 CCTCTTGCGCAGGGTGAG 60.436 66.667 20.24 19.09 0.00 3.51
3667 4159 2.435586 CTCTTGCGCAGGGTGAGG 60.436 66.667 20.24 0.25 0.00 3.86
3668 4160 4.704833 TCTTGCGCAGGGTGAGGC 62.705 66.667 20.24 0.00 0.00 4.70
3693 4185 2.480555 CGATGGAAGCGGTTGCAC 59.519 61.111 23.87 15.67 45.34 4.57
3694 4186 2.324330 CGATGGAAGCGGTTGCACA 61.324 57.895 23.87 10.77 45.34 4.57
3695 4187 1.503542 GATGGAAGCGGTTGCACAG 59.496 57.895 23.87 0.00 46.23 3.66
3696 4188 1.926511 GATGGAAGCGGTTGCACAGG 61.927 60.000 23.87 0.00 46.23 4.00
3697 4189 4.043200 GGAAGCGGTTGCACAGGC 62.043 66.667 14.31 0.00 46.23 4.85
3698 4190 4.389576 GAAGCGGTTGCACAGGCG 62.390 66.667 3.70 0.00 46.23 5.52
3702 4194 2.972505 CGGTTGCACAGGCGTCTT 60.973 61.111 0.00 0.00 45.35 3.01
3703 4195 2.639286 GGTTGCACAGGCGTCTTG 59.361 61.111 0.00 0.00 45.35 3.02
3704 4196 2.639286 GTTGCACAGGCGTCTTGG 59.361 61.111 0.00 0.00 45.35 3.61
3705 4197 1.891919 GTTGCACAGGCGTCTTGGA 60.892 57.895 0.00 0.00 45.35 3.53
3706 4198 1.597854 TTGCACAGGCGTCTTGGAG 60.598 57.895 0.00 0.00 45.35 3.86
3707 4199 2.038814 TTGCACAGGCGTCTTGGAGA 62.039 55.000 0.00 0.00 45.35 3.71
3822 4320 1.025113 GCTAAGAAACCGTGGAGGCC 61.025 60.000 0.00 0.00 46.52 5.19
3839 4337 4.385310 GGAGGCCCATAGTAAGTGTTTGAT 60.385 45.833 0.00 0.00 0.00 2.57
3846 4344 6.403636 CCCATAGTAAGTGTTTGATGAAGTGC 60.404 42.308 0.00 0.00 0.00 4.40
3868 4368 1.587034 GGCGCATAGTAAGTGTTCGAC 59.413 52.381 10.83 0.00 0.00 4.20
3869 4369 2.256174 GCGCATAGTAAGTGTTCGACA 58.744 47.619 0.30 0.00 0.00 4.35
3878 4378 6.795098 AGTAAGTGTTCGACAAAATGCATA 57.205 33.333 0.00 0.00 0.00 3.14
3913 4413 7.996098 TCTTTTACTTCATTAACTTCAGGGG 57.004 36.000 0.00 0.00 0.00 4.79
3915 4415 8.390921 TCTTTTACTTCATTAACTTCAGGGGAT 58.609 33.333 0.00 0.00 0.00 3.85
3934 4434 1.774639 TCGGCTAGACACGACAAAAC 58.225 50.000 0.00 0.00 33.69 2.43
3985 4485 8.102716 CGACGTTTACTCTGCTAAAATTTAGAG 58.897 37.037 16.22 12.26 41.78 2.43
3986 4486 9.136952 GACGTTTACTCTGCTAAAATTTAGAGA 57.863 33.333 18.37 13.37 39.13 3.10
3995 4495 9.517609 TCTGCTAAAATTTAGAGAATCGACTAC 57.482 33.333 16.22 0.00 42.67 2.73
4043 4543 4.022589 CACTTCACTAGGGTTTACTCGACA 60.023 45.833 0.00 0.00 0.00 4.35
4147 4647 4.910195 TGCATGGAGTGTGTTTTCTATCT 58.090 39.130 0.00 0.00 0.00 1.98
4148 4648 4.696877 TGCATGGAGTGTGTTTTCTATCTG 59.303 41.667 0.00 0.00 0.00 2.90
4149 4649 4.937620 GCATGGAGTGTGTTTTCTATCTGA 59.062 41.667 0.00 0.00 0.00 3.27
4150 4650 5.064452 GCATGGAGTGTGTTTTCTATCTGAG 59.936 44.000 0.00 0.00 0.00 3.35
4151 4651 4.569943 TGGAGTGTGTTTTCTATCTGAGC 58.430 43.478 0.00 0.00 0.00 4.26
4152 4652 4.040339 TGGAGTGTGTTTTCTATCTGAGCA 59.960 41.667 0.00 0.00 0.00 4.26
4153 4653 4.390297 GGAGTGTGTTTTCTATCTGAGCAC 59.610 45.833 0.00 0.00 0.00 4.40
4154 4654 3.990469 AGTGTGTTTTCTATCTGAGCACG 59.010 43.478 0.00 0.00 31.33 5.34
4155 4655 2.736721 TGTGTTTTCTATCTGAGCACGC 59.263 45.455 0.00 0.00 31.33 5.34
4156 4656 2.996621 GTGTTTTCTATCTGAGCACGCT 59.003 45.455 0.00 0.00 0.00 5.07
4157 4657 3.433615 GTGTTTTCTATCTGAGCACGCTT 59.566 43.478 0.00 0.00 0.00 4.68
4158 4658 3.433274 TGTTTTCTATCTGAGCACGCTTG 59.567 43.478 0.00 0.00 0.00 4.01
4159 4659 2.299993 TTCTATCTGAGCACGCTTGG 57.700 50.000 0.00 0.00 0.00 3.61
4160 4660 0.179100 TCTATCTGAGCACGCTTGGC 60.179 55.000 0.00 0.00 0.00 4.52
4173 4673 2.939460 GCTTGGCGTTGGTTATCATT 57.061 45.000 0.00 0.00 0.00 2.57
4174 4674 2.797491 GCTTGGCGTTGGTTATCATTC 58.203 47.619 0.00 0.00 0.00 2.67
4175 4675 2.479560 GCTTGGCGTTGGTTATCATTCC 60.480 50.000 0.00 0.00 0.00 3.01
4176 4676 2.799126 TGGCGTTGGTTATCATTCCT 57.201 45.000 0.00 0.00 0.00 3.36
4177 4677 3.080300 TGGCGTTGGTTATCATTCCTT 57.920 42.857 0.00 0.00 0.00 3.36
4178 4678 2.752354 TGGCGTTGGTTATCATTCCTTG 59.248 45.455 0.00 0.00 0.00 3.61
4179 4679 2.752903 GGCGTTGGTTATCATTCCTTGT 59.247 45.455 0.00 0.00 0.00 3.16
4180 4680 3.192633 GGCGTTGGTTATCATTCCTTGTT 59.807 43.478 0.00 0.00 0.00 2.83
4181 4681 4.412207 GCGTTGGTTATCATTCCTTGTTC 58.588 43.478 0.00 0.00 0.00 3.18
4182 4682 4.647964 CGTTGGTTATCATTCCTTGTTCG 58.352 43.478 0.00 0.00 0.00 3.95
4183 4683 4.390603 CGTTGGTTATCATTCCTTGTTCGA 59.609 41.667 0.00 0.00 0.00 3.71
4184 4684 5.106869 CGTTGGTTATCATTCCTTGTTCGAA 60.107 40.000 0.00 0.00 0.00 3.71
4185 4685 6.566942 CGTTGGTTATCATTCCTTGTTCGAAA 60.567 38.462 0.00 0.00 0.00 3.46
4186 4686 7.312899 GTTGGTTATCATTCCTTGTTCGAAAT 58.687 34.615 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.436998 CCTCACCTGCGACGTCCC 62.437 72.222 10.58 0.53 0.00 4.46
48 49 0.806868 TGTAGAAGCGGGTGTAGTCG 59.193 55.000 0.00 0.00 0.00 4.18
49 50 2.810650 CATGTAGAAGCGGGTGTAGTC 58.189 52.381 0.00 0.00 0.00 2.59
50 51 1.134788 GCATGTAGAAGCGGGTGTAGT 60.135 52.381 0.00 0.00 0.00 2.73
51 52 1.137086 AGCATGTAGAAGCGGGTGTAG 59.863 52.381 0.00 0.00 35.48 2.74
52 53 1.191535 AGCATGTAGAAGCGGGTGTA 58.808 50.000 0.00 0.00 35.48 2.90
53 54 0.324943 AAGCATGTAGAAGCGGGTGT 59.675 50.000 0.00 0.00 35.48 4.16
54 55 1.009829 GAAGCATGTAGAAGCGGGTG 58.990 55.000 0.00 0.00 35.48 4.61
55 56 0.905357 AGAAGCATGTAGAAGCGGGT 59.095 50.000 0.00 0.00 35.48 5.28
56 57 1.576356 GAGAAGCATGTAGAAGCGGG 58.424 55.000 0.00 0.00 35.48 6.13
57 58 1.202302 TCGAGAAGCATGTAGAAGCGG 60.202 52.381 0.00 0.00 35.48 5.52
58 59 1.849219 GTCGAGAAGCATGTAGAAGCG 59.151 52.381 0.00 0.00 35.48 4.68
59 60 2.881074 TGTCGAGAAGCATGTAGAAGC 58.119 47.619 0.00 0.00 0.00 3.86
66 67 2.786027 CGTCTACATGTCGAGAAGCATG 59.214 50.000 0.00 11.10 45.61 4.06
67 68 2.223595 CCGTCTACATGTCGAGAAGCAT 60.224 50.000 0.00 0.00 0.00 3.79
68 69 1.132453 CCGTCTACATGTCGAGAAGCA 59.868 52.381 0.00 0.00 0.00 3.91
69 70 1.828832 CCGTCTACATGTCGAGAAGC 58.171 55.000 0.00 0.00 0.00 3.86
70 71 1.828832 GCCGTCTACATGTCGAGAAG 58.171 55.000 0.00 2.91 0.00 2.85
71 72 0.098200 CGCCGTCTACATGTCGAGAA 59.902 55.000 0.00 0.00 0.00 2.87
72 73 1.712018 CCGCCGTCTACATGTCGAGA 61.712 60.000 0.00 0.00 0.00 4.04
73 74 1.298413 CCGCCGTCTACATGTCGAG 60.298 63.158 0.00 0.00 0.00 4.04
74 75 2.795973 CCGCCGTCTACATGTCGA 59.204 61.111 0.00 0.00 0.00 4.20
75 76 2.954868 GCCGCCGTCTACATGTCG 60.955 66.667 0.00 0.00 0.00 4.35
76 77 2.954868 CGCCGCCGTCTACATGTC 60.955 66.667 0.00 0.00 0.00 3.06
77 78 4.508128 CCGCCGCCGTCTACATGT 62.508 66.667 2.69 2.69 0.00 3.21
106 107 2.701163 AATAGCCTAGACGCTGCCGC 62.701 60.000 3.96 0.00 40.08 6.53
107 108 0.249489 AAATAGCCTAGACGCTGCCG 60.249 55.000 3.96 0.00 40.08 5.69
108 109 2.036089 ACTAAATAGCCTAGACGCTGCC 59.964 50.000 3.96 0.00 40.08 4.85
109 110 3.372660 ACTAAATAGCCTAGACGCTGC 57.627 47.619 3.96 0.00 40.08 5.25
110 111 6.074544 ACTAACTAAATAGCCTAGACGCTG 57.925 41.667 3.96 0.00 40.08 5.18
111 112 6.712179 AACTAACTAAATAGCCTAGACGCT 57.288 37.500 0.00 0.00 43.09 5.07
112 113 7.490402 TCAAAACTAACTAAATAGCCTAGACGC 59.510 37.037 0.00 0.00 0.00 5.19
113 114 8.922058 TCAAAACTAACTAAATAGCCTAGACG 57.078 34.615 0.00 0.00 0.00 4.18
126 127 9.332502 TGCATGAACTAACTTCAAAACTAACTA 57.667 29.630 0.00 0.00 42.37 2.24
127 128 8.220755 TGCATGAACTAACTTCAAAACTAACT 57.779 30.769 0.00 0.00 42.37 2.24
183 184 4.339872 TTGCATGAACTCAGCCATTTTT 57.660 36.364 0.00 0.00 0.00 1.94
184 185 4.339872 TTTGCATGAACTCAGCCATTTT 57.660 36.364 0.00 0.00 0.00 1.82
185 186 4.339872 TTTTGCATGAACTCAGCCATTT 57.660 36.364 0.00 0.00 0.00 2.32
186 187 4.339872 TTTTTGCATGAACTCAGCCATT 57.660 36.364 0.00 0.00 0.00 3.16
187 188 4.020928 TGATTTTTGCATGAACTCAGCCAT 60.021 37.500 0.00 0.00 0.00 4.40
188 189 3.321396 TGATTTTTGCATGAACTCAGCCA 59.679 39.130 0.00 0.00 0.00 4.75
189 190 3.676646 GTGATTTTTGCATGAACTCAGCC 59.323 43.478 0.00 0.00 0.00 4.85
190 191 3.676646 GGTGATTTTTGCATGAACTCAGC 59.323 43.478 13.25 13.25 0.00 4.26
191 192 3.916172 CGGTGATTTTTGCATGAACTCAG 59.084 43.478 0.00 0.00 0.00 3.35
192 193 3.567585 TCGGTGATTTTTGCATGAACTCA 59.432 39.130 0.00 0.00 0.00 3.41
193 194 4.159377 TCGGTGATTTTTGCATGAACTC 57.841 40.909 0.00 0.00 0.00 3.01
194 195 3.569701 ACTCGGTGATTTTTGCATGAACT 59.430 39.130 0.00 0.00 0.00 3.01
195 196 3.900941 ACTCGGTGATTTTTGCATGAAC 58.099 40.909 0.00 0.00 0.00 3.18
196 197 4.582701 AACTCGGTGATTTTTGCATGAA 57.417 36.364 0.00 0.00 0.00 2.57
197 198 4.297510 CAAACTCGGTGATTTTTGCATGA 58.702 39.130 0.00 0.00 0.00 3.07
198 199 4.634349 CAAACTCGGTGATTTTTGCATG 57.366 40.909 0.00 0.00 0.00 4.06
202 203 5.462034 TTTTGCAAACTCGGTGATTTTTG 57.538 34.783 12.39 0.00 33.03 2.44
223 224 3.484285 CGGCGAAGTTCGTTTCAATTTTT 59.516 39.130 25.04 0.00 42.81 1.94
224 225 3.040099 CGGCGAAGTTCGTTTCAATTTT 58.960 40.909 25.04 0.00 42.81 1.82
225 226 2.288458 TCGGCGAAGTTCGTTTCAATTT 59.712 40.909 25.04 0.00 42.81 1.82
226 227 1.868498 TCGGCGAAGTTCGTTTCAATT 59.132 42.857 25.04 0.00 42.81 2.32
227 228 1.504359 TCGGCGAAGTTCGTTTCAAT 58.496 45.000 25.04 0.00 42.81 2.57
228 229 1.004715 GTTCGGCGAAGTTCGTTTCAA 60.005 47.619 24.41 11.11 42.81 2.69
229 230 0.578211 GTTCGGCGAAGTTCGTTTCA 59.422 50.000 24.41 6.24 42.81 2.69
230 231 0.110956 GGTTCGGCGAAGTTCGTTTC 60.111 55.000 24.41 14.34 42.81 2.78
231 232 1.501337 GGGTTCGGCGAAGTTCGTTT 61.501 55.000 24.41 0.00 42.81 3.60
232 233 1.957695 GGGTTCGGCGAAGTTCGTT 60.958 57.895 24.41 0.00 42.81 3.85
233 234 2.356673 GGGTTCGGCGAAGTTCGT 60.357 61.111 24.41 0.00 42.81 3.85
234 235 3.475774 CGGGTTCGGCGAAGTTCG 61.476 66.667 24.41 20.87 43.89 3.95
235 236 3.785499 GCGGGTTCGGCGAAGTTC 61.785 66.667 24.41 14.96 36.79 3.01
260 261 3.883744 CTCCCAGTCACGTGCCCAC 62.884 68.421 11.67 3.96 0.00 4.61
261 262 3.625897 CTCCCAGTCACGTGCCCA 61.626 66.667 11.67 0.00 0.00 5.36
264 265 3.858868 TTCGCTCCCAGTCACGTGC 62.859 63.158 11.67 6.26 0.00 5.34
265 266 2.022129 GTTCGCTCCCAGTCACGTG 61.022 63.158 9.94 9.94 0.00 4.49
266 267 2.338984 GTTCGCTCCCAGTCACGT 59.661 61.111 0.00 0.00 0.00 4.49
267 268 2.432628 GGTTCGCTCCCAGTCACG 60.433 66.667 0.00 0.00 0.00 4.35
268 269 2.430382 TTCGGTTCGCTCCCAGTCAC 62.430 60.000 0.00 0.00 0.00 3.67
269 270 2.204461 TTCGGTTCGCTCCCAGTCA 61.204 57.895 0.00 0.00 0.00 3.41
270 271 1.737008 GTTCGGTTCGCTCCCAGTC 60.737 63.158 0.00 0.00 0.00 3.51
271 272 2.342648 GTTCGGTTCGCTCCCAGT 59.657 61.111 0.00 0.00 0.00 4.00
272 273 2.434359 GGTTCGGTTCGCTCCCAG 60.434 66.667 0.00 0.00 0.00 4.45
273 274 4.011517 GGGTTCGGTTCGCTCCCA 62.012 66.667 12.05 0.00 38.52 4.37
274 275 4.772687 GGGGTTCGGTTCGCTCCC 62.773 72.222 9.70 9.70 38.17 4.30
275 276 3.952628 CTGGGGTTCGGTTCGCTCC 62.953 68.421 0.00 0.00 0.00 4.70
276 277 2.434359 CTGGGGTTCGGTTCGCTC 60.434 66.667 0.00 0.00 0.00 5.03
277 278 4.016706 CCTGGGGTTCGGTTCGCT 62.017 66.667 0.00 0.00 0.00 4.93
279 280 2.886134 TTCCCTGGGGTTCGGTTCG 61.886 63.158 14.00 0.00 36.47 3.95
280 281 1.303074 GTTCCCTGGGGTTCGGTTC 60.303 63.158 14.00 0.00 36.47 3.62
281 282 2.841317 GTTCCCTGGGGTTCGGTT 59.159 61.111 14.00 0.00 36.47 4.44
282 283 3.633116 CGTTCCCTGGGGTTCGGT 61.633 66.667 14.00 0.00 36.47 4.69
283 284 2.588856 GATCGTTCCCTGGGGTTCGG 62.589 65.000 14.00 0.00 36.47 4.30
284 285 1.153429 GATCGTTCCCTGGGGTTCG 60.153 63.158 14.00 14.71 36.47 3.95
285 286 1.413077 CTAGATCGTTCCCTGGGGTTC 59.587 57.143 14.00 1.78 36.47 3.62
286 287 1.497161 CTAGATCGTTCCCTGGGGTT 58.503 55.000 14.00 0.00 36.47 4.11
287 288 1.049289 GCTAGATCGTTCCCTGGGGT 61.049 60.000 14.00 0.00 36.47 4.95
288 289 1.749033 GCTAGATCGTTCCCTGGGG 59.251 63.158 14.00 2.42 0.00 4.96
289 290 1.364171 CGCTAGATCGTTCCCTGGG 59.636 63.158 6.33 6.33 0.00 4.45
290 291 1.300233 GCGCTAGATCGTTCCCTGG 60.300 63.158 0.00 0.00 0.00 4.45
291 292 1.300233 GGCGCTAGATCGTTCCCTG 60.300 63.158 7.64 0.00 0.00 4.45
292 293 2.846652 CGGCGCTAGATCGTTCCCT 61.847 63.158 7.64 0.00 0.00 4.20
293 294 2.354773 CGGCGCTAGATCGTTCCC 60.355 66.667 7.64 0.00 0.00 3.97
294 295 2.354773 CCGGCGCTAGATCGTTCC 60.355 66.667 7.64 0.00 0.00 3.62
295 296 1.207377 GAACCGGCGCTAGATCGTTC 61.207 60.000 7.64 4.15 0.00 3.95
296 297 1.226888 GAACCGGCGCTAGATCGTT 60.227 57.895 7.64 0.00 0.00 3.85
297 298 2.412112 GAACCGGCGCTAGATCGT 59.588 61.111 7.64 0.00 0.00 3.73
298 299 2.726180 CGAACCGGCGCTAGATCG 60.726 66.667 7.64 11.30 0.00 3.69
316 317 1.303282 AAAAAGAGCGGCCTAGGGG 59.697 57.895 11.72 0.00 0.00 4.79
346 347 4.514577 ATCTCCAGCCGTTCGCCG 62.515 66.667 0.00 0.00 38.78 6.46
347 348 2.892425 CATCTCCAGCCGTTCGCC 60.892 66.667 0.00 0.00 38.78 5.54
348 349 3.567797 GCATCTCCAGCCGTTCGC 61.568 66.667 0.00 0.00 37.98 4.70
349 350 1.880340 GAGCATCTCCAGCCGTTCG 60.880 63.158 0.00 0.00 0.00 3.95
350 351 4.116878 GAGCATCTCCAGCCGTTC 57.883 61.111 0.00 0.00 0.00 3.95
361 362 9.887406 GACACTAGTCTAAGTTATTAGAGCATC 57.113 37.037 0.00 0.00 46.28 3.91
362 363 9.409918 TGACACTAGTCTAAGTTATTAGAGCAT 57.590 33.333 0.00 0.00 46.28 3.79
363 364 8.803397 TGACACTAGTCTAAGTTATTAGAGCA 57.197 34.615 0.00 0.00 46.28 4.26
370 371 9.920133 CATGCATATGACACTAGTCTAAGTTAT 57.080 33.333 6.97 0.00 45.20 1.89
371 372 9.131791 TCATGCATATGACACTAGTCTAAGTTA 57.868 33.333 6.97 0.00 45.20 2.24
372 373 8.011844 TCATGCATATGACACTAGTCTAAGTT 57.988 34.615 6.97 0.00 45.20 2.66
373 374 7.588497 TCATGCATATGACACTAGTCTAAGT 57.412 36.000 6.97 0.00 45.20 2.24
395 396 9.910267 TGGTCTATGTTACTTATACTAGTGTCA 57.090 33.333 5.39 0.00 0.00 3.58
397 398 8.848182 GCTGGTCTATGTTACTTATACTAGTGT 58.152 37.037 5.39 0.39 0.00 3.55
398 399 8.298140 GGCTGGTCTATGTTACTTATACTAGTG 58.702 40.741 5.39 0.00 0.00 2.74
399 400 8.226112 AGGCTGGTCTATGTTACTTATACTAGT 58.774 37.037 0.00 0.00 0.00 2.57
400 401 8.638629 AGGCTGGTCTATGTTACTTATACTAG 57.361 38.462 0.00 0.00 0.00 2.57
402 403 9.080097 CTTAGGCTGGTCTATGTTACTTATACT 57.920 37.037 0.00 0.00 0.00 2.12
403 404 7.813627 GCTTAGGCTGGTCTATGTTACTTATAC 59.186 40.741 0.00 0.00 35.22 1.47
404 405 7.039223 GGCTTAGGCTGGTCTATGTTACTTATA 60.039 40.741 0.00 0.00 38.73 0.98
405 406 6.239629 GGCTTAGGCTGGTCTATGTTACTTAT 60.240 42.308 0.00 0.00 38.73 1.73
406 407 5.070047 GGCTTAGGCTGGTCTATGTTACTTA 59.930 44.000 0.00 0.00 38.73 2.24
407 408 4.141688 GGCTTAGGCTGGTCTATGTTACTT 60.142 45.833 0.00 0.00 38.73 2.24
408 409 3.388350 GGCTTAGGCTGGTCTATGTTACT 59.612 47.826 0.00 0.00 38.73 2.24
409 410 3.494573 GGGCTTAGGCTGGTCTATGTTAC 60.495 52.174 5.62 0.00 38.73 2.50
410 411 2.704065 GGGCTTAGGCTGGTCTATGTTA 59.296 50.000 5.62 0.00 38.73 2.41
411 412 1.490910 GGGCTTAGGCTGGTCTATGTT 59.509 52.381 5.62 0.00 38.73 2.71
412 413 1.132500 GGGCTTAGGCTGGTCTATGT 58.868 55.000 5.62 0.00 38.73 2.29
413 414 0.034059 CGGGCTTAGGCTGGTCTATG 59.966 60.000 6.73 0.00 38.73 2.23
414 415 2.442056 CGGGCTTAGGCTGGTCTAT 58.558 57.895 6.73 0.00 38.73 1.98
415 416 3.950232 CGGGCTTAGGCTGGTCTA 58.050 61.111 6.73 0.00 38.73 2.59
420 421 0.759346 ATTAGTCCGGGCTTAGGCTG 59.241 55.000 17.04 7.72 38.73 4.85
421 422 0.759346 CATTAGTCCGGGCTTAGGCT 59.241 55.000 17.04 0.00 38.73 4.58
422 423 0.250338 CCATTAGTCCGGGCTTAGGC 60.250 60.000 17.04 0.00 37.82 3.93
423 424 1.070289 GTCCATTAGTCCGGGCTTAGG 59.930 57.143 17.04 14.62 0.00 2.69
424 425 1.269621 CGTCCATTAGTCCGGGCTTAG 60.270 57.143 17.04 4.22 0.00 2.18
425 426 0.748450 CGTCCATTAGTCCGGGCTTA 59.252 55.000 17.04 5.12 0.00 3.09
426 427 1.520666 CGTCCATTAGTCCGGGCTT 59.479 57.895 17.04 0.00 0.00 4.35
427 428 3.090219 GCGTCCATTAGTCCGGGCT 62.090 63.158 15.76 15.76 0.00 5.19
431 432 1.429148 GCCTTGCGTCCATTAGTCCG 61.429 60.000 0.00 0.00 0.00 4.79
451 452 2.592001 TCTCGAGATCGGCGGAGG 60.592 66.667 12.08 0.00 40.29 4.30
457 458 1.222766 ATCGGTCGTCTCGAGATCGG 61.223 60.000 26.03 19.37 40.09 4.18
473 474 5.043903 ACTCTAATCGTTGGATGTGAATCG 58.956 41.667 0.00 0.00 31.83 3.34
485 486 1.741706 TCTCGCCGAACTCTAATCGTT 59.258 47.619 0.00 0.00 38.60 3.85
486 487 1.376543 TCTCGCCGAACTCTAATCGT 58.623 50.000 0.00 0.00 38.60 3.73
487 488 2.223294 ACTTCTCGCCGAACTCTAATCG 60.223 50.000 0.00 0.00 39.92 3.34
488 489 3.423996 ACTTCTCGCCGAACTCTAATC 57.576 47.619 0.00 0.00 0.00 1.75
489 490 3.693085 TGTACTTCTCGCCGAACTCTAAT 59.307 43.478 0.00 0.00 0.00 1.73
490 491 3.076621 TGTACTTCTCGCCGAACTCTAA 58.923 45.455 0.00 0.00 0.00 2.10
491 492 2.703416 TGTACTTCTCGCCGAACTCTA 58.297 47.619 0.00 0.00 0.00 2.43
492 493 1.531423 TGTACTTCTCGCCGAACTCT 58.469 50.000 0.00 0.00 0.00 3.24
502 516 7.812309 AAAACAAACAGCTTTTGTACTTCTC 57.188 32.000 20.08 0.00 41.30 2.87
535 549 5.454877 GCTCCTCATTAACTTACGTACTTCG 59.545 44.000 0.00 0.00 46.00 3.79
536 550 6.327934 TGCTCCTCATTAACTTACGTACTTC 58.672 40.000 0.00 0.00 0.00 3.01
537 551 6.276832 TGCTCCTCATTAACTTACGTACTT 57.723 37.500 0.00 0.00 0.00 2.24
538 552 5.909621 TGCTCCTCATTAACTTACGTACT 57.090 39.130 0.00 0.00 0.00 2.73
539 553 5.050972 GCATGCTCCTCATTAACTTACGTAC 60.051 44.000 11.37 0.00 31.79 3.67
591 606 5.142061 TCGTTCTGTGCAAAGGAGTTATA 57.858 39.130 3.47 0.00 0.00 0.98
592 607 4.002906 TCGTTCTGTGCAAAGGAGTTAT 57.997 40.909 3.47 0.00 0.00 1.89
596 611 1.264288 GGTTCGTTCTGTGCAAAGGAG 59.736 52.381 3.47 0.00 0.00 3.69
940 959 2.801063 TCGACCGAGGCTAATAAAACG 58.199 47.619 0.00 0.00 0.00 3.60
981 1000 0.385751 TCTCCAACCTGCGATCGATC 59.614 55.000 21.57 15.68 0.00 3.69
1042 1061 1.617839 AGGGGCAAGGGAGAAGGAG 60.618 63.158 0.00 0.00 0.00 3.69
1062 1081 7.255836 GCCTAAATTGAAAGAAACTAACAGGGT 60.256 37.037 0.00 0.00 0.00 4.34
1071 1090 6.970484 TGTCAGAGCCTAAATTGAAAGAAAC 58.030 36.000 0.00 0.00 0.00 2.78
1230 1249 3.939939 TGCCTGAGCACGGAAGCA 61.940 61.111 0.00 0.00 46.52 3.91
1309 1328 1.296392 CGACAACCATCTGCCCTCA 59.704 57.895 0.00 0.00 0.00 3.86
1343 1362 6.488006 GTGTAGATGGTGCTTCAATGGAATAT 59.512 38.462 0.00 0.00 31.34 1.28
1413 1435 9.871238 GACTACTGAATTGATAAACCAAGTCTA 57.129 33.333 0.00 0.00 40.54 2.59
1420 1442 8.779354 AACAGAGACTACTGAATTGATAAACC 57.221 34.615 0.00 0.00 40.63 3.27
1424 1446 9.996554 TGAAAAACAGAGACTACTGAATTGATA 57.003 29.630 0.00 0.00 40.63 2.15
1568 1675 9.597681 AAGGCATTCAGGAATATGAATTAAGAT 57.402 29.630 0.00 0.00 45.44 2.40
1569 1676 8.853126 CAAGGCATTCAGGAATATGAATTAAGA 58.147 33.333 0.00 0.00 45.44 2.10
1654 1761 9.899661 ATCACATAATTGCTGGTTACTTAACTA 57.100 29.630 0.00 0.00 36.47 2.24
1721 1828 5.072741 GCAATCCATAGGAGAAGCCAAATA 58.927 41.667 0.00 0.00 40.02 1.40
1722 1829 3.893813 GCAATCCATAGGAGAAGCCAAAT 59.106 43.478 0.00 0.00 40.02 2.32
1871 1981 6.986817 GGAGACAGTAACTGTGCATATAACAT 59.013 38.462 0.00 0.00 45.44 2.71
2134 2248 5.938125 ACAACATTGCTGGTTACCTAACTAG 59.062 40.000 2.07 4.60 44.55 2.57
2135 2249 5.703592 CACAACATTGCTGGTTACCTAACTA 59.296 40.000 2.07 0.00 36.47 2.24
2136 2250 4.518970 CACAACATTGCTGGTTACCTAACT 59.481 41.667 2.07 0.00 36.47 2.24
2137 2251 4.517453 TCACAACATTGCTGGTTACCTAAC 59.483 41.667 2.07 0.00 35.50 2.34
2138 2252 4.720046 TCACAACATTGCTGGTTACCTAA 58.280 39.130 2.07 0.00 0.00 2.69
2139 2253 4.359434 TCACAACATTGCTGGTTACCTA 57.641 40.909 2.07 0.00 0.00 3.08
2140 2254 3.222173 TCACAACATTGCTGGTTACCT 57.778 42.857 2.07 0.00 0.00 3.08
2141 2255 3.426159 CGATCACAACATTGCTGGTTACC 60.426 47.826 0.00 0.00 0.00 2.85
2142 2256 3.188460 ACGATCACAACATTGCTGGTTAC 59.812 43.478 0.00 0.00 0.00 2.50
2143 2257 3.407698 ACGATCACAACATTGCTGGTTA 58.592 40.909 0.00 0.00 0.00 2.85
2144 2258 2.229792 ACGATCACAACATTGCTGGTT 58.770 42.857 0.00 0.00 0.00 3.67
2145 2259 1.896220 ACGATCACAACATTGCTGGT 58.104 45.000 0.00 0.00 0.00 4.00
2146 2260 2.981805 CAAACGATCACAACATTGCTGG 59.018 45.455 0.00 0.00 0.00 4.85
2147 2261 2.981805 CCAAACGATCACAACATTGCTG 59.018 45.455 0.00 0.00 0.00 4.41
2148 2262 2.622942 ACCAAACGATCACAACATTGCT 59.377 40.909 0.00 0.00 0.00 3.91
2149 2263 2.725723 CACCAAACGATCACAACATTGC 59.274 45.455 0.00 0.00 0.00 3.56
2169 2283 1.270839 GCACCAGTAAGACAGAAGGCA 60.271 52.381 0.00 0.00 0.00 4.75
2609 2751 3.479489 TGAAAAGAACTGCTCATCTGCA 58.521 40.909 0.00 0.00 41.05 4.41
2634 2776 1.818642 CAGAGCTCAACCCCAGAAAG 58.181 55.000 17.77 0.00 0.00 2.62
3218 3512 0.948623 CGTCGCAACCTGAACATCCA 60.949 55.000 0.00 0.00 0.00 3.41
3353 3649 9.853177 AGAATTGATAAATCTTCGACCCTTTAT 57.147 29.630 5.44 5.44 0.00 1.40
3354 3650 9.326413 GAGAATTGATAAATCTTCGACCCTTTA 57.674 33.333 0.00 0.00 0.00 1.85
3355 3651 7.011482 CGAGAATTGATAAATCTTCGACCCTTT 59.989 37.037 3.82 0.00 0.00 3.11
3356 3652 6.480320 CGAGAATTGATAAATCTTCGACCCTT 59.520 38.462 3.82 0.00 0.00 3.95
3357 3653 5.986135 CGAGAATTGATAAATCTTCGACCCT 59.014 40.000 3.82 0.00 0.00 4.34
3358 3654 5.753921 ACGAGAATTGATAAATCTTCGACCC 59.246 40.000 13.15 0.00 0.00 4.46
3370 3666 7.494625 GGAACATAAACCAGACGAGAATTGATA 59.505 37.037 0.00 0.00 0.00 2.15
3444 3740 0.555769 ACAAAAAGGACAGCCCCAGA 59.444 50.000 0.00 0.00 34.66 3.86
3445 3741 1.413118 AACAAAAAGGACAGCCCCAG 58.587 50.000 0.00 0.00 34.66 4.45
3447 3743 1.760029 TCAAACAAAAAGGACAGCCCC 59.240 47.619 0.00 0.00 34.66 5.80
3448 3744 2.693074 TCTCAAACAAAAAGGACAGCCC 59.307 45.455 0.00 0.00 33.31 5.19
3449 3745 4.112634 GTTCTCAAACAAAAAGGACAGCC 58.887 43.478 0.00 0.00 35.36 4.85
3450 3746 4.800471 CAGTTCTCAAACAAAAAGGACAGC 59.200 41.667 0.00 0.00 37.88 4.40
3451 3747 4.800471 GCAGTTCTCAAACAAAAAGGACAG 59.200 41.667 0.00 0.00 37.88 3.51
3496 3849 2.654896 AGGGAGGCTGTTTTTAGGGATT 59.345 45.455 0.00 0.00 0.00 3.01
3501 3854 2.716217 CCTCAGGGAGGCTGTTTTTAG 58.284 52.381 0.00 0.00 43.29 1.85
3523 3876 1.337447 GGCGAGCAGGTGTAAGTGTAA 60.337 52.381 0.00 0.00 0.00 2.41
3608 4099 1.807226 CATGCTGTCCATGCCTGTG 59.193 57.895 0.00 0.00 44.34 3.66
3637 4129 2.357517 AAGAGGCACAACTCCGCG 60.358 61.111 0.00 0.00 38.26 6.46
3638 4130 2.970974 GCAAGAGGCACAACTCCGC 61.971 63.158 0.00 0.00 43.97 5.54
3639 4131 2.671177 CGCAAGAGGCACAACTCCG 61.671 63.158 0.00 0.00 45.17 4.63
3640 4132 2.970974 GCGCAAGAGGCACAACTCC 61.971 63.158 0.30 0.00 45.17 3.85
3641 4133 2.180131 CTGCGCAAGAGGCACAACTC 62.180 60.000 13.05 0.00 45.17 3.01
3642 4134 2.203195 TGCGCAAGAGGCACAACT 60.203 55.556 8.16 0.00 45.17 3.16
3643 4135 2.253452 CTGCGCAAGAGGCACAAC 59.747 61.111 13.05 0.00 45.17 3.32
3644 4136 2.979676 CCTGCGCAAGAGGCACAA 60.980 61.111 13.05 0.00 45.17 3.33
3648 4140 4.704833 TCACCCTGCGCAAGAGGC 62.705 66.667 13.05 0.00 43.02 4.70
3649 4141 2.435586 CTCACCCTGCGCAAGAGG 60.436 66.667 13.05 15.41 43.02 3.69
3650 4142 2.435586 CCTCACCCTGCGCAAGAG 60.436 66.667 13.05 15.69 43.02 2.85
3651 4143 4.704833 GCCTCACCCTGCGCAAGA 62.705 66.667 13.05 6.44 43.02 3.02
3669 4161 4.233635 CGCTTCCATCGCAGCAGC 62.234 66.667 0.00 0.00 35.60 5.25
3670 4162 3.570638 CCGCTTCCATCGCAGCAG 61.571 66.667 0.00 0.00 35.60 4.24
3671 4163 3.899981 AACCGCTTCCATCGCAGCA 62.900 57.895 0.00 0.00 35.60 4.41
3672 4164 3.127533 AACCGCTTCCATCGCAGC 61.128 61.111 0.00 0.00 0.00 5.25
3673 4165 2.787249 CAACCGCTTCCATCGCAG 59.213 61.111 0.00 0.00 0.00 5.18
3674 4166 3.430862 GCAACCGCTTCCATCGCA 61.431 61.111 0.00 0.00 34.30 5.10
3675 4167 3.430862 TGCAACCGCTTCCATCGC 61.431 61.111 0.00 0.00 39.64 4.58
3676 4168 2.244436 CTGTGCAACCGCTTCCATCG 62.244 60.000 0.00 0.00 39.64 3.84
3677 4169 1.503542 CTGTGCAACCGCTTCCATC 59.496 57.895 0.00 0.00 39.64 3.51
3678 4170 1.973281 CCTGTGCAACCGCTTCCAT 60.973 57.895 0.00 0.00 39.64 3.41
3679 4171 2.594303 CCTGTGCAACCGCTTCCA 60.594 61.111 0.00 0.00 39.64 3.53
3680 4172 4.043200 GCCTGTGCAACCGCTTCC 62.043 66.667 0.00 0.00 39.64 3.46
3681 4173 4.389576 CGCCTGTGCAACCGCTTC 62.390 66.667 0.00 0.00 39.64 3.86
3685 4177 2.972505 AAGACGCCTGTGCAACCG 60.973 61.111 0.00 0.00 37.32 4.44
3686 4178 2.639286 CAAGACGCCTGTGCAACC 59.361 61.111 0.00 0.00 37.32 3.77
3687 4179 1.845809 CTCCAAGACGCCTGTGCAAC 61.846 60.000 0.00 0.00 37.32 4.17
3688 4180 1.597854 CTCCAAGACGCCTGTGCAA 60.598 57.895 0.00 0.00 37.32 4.08
3689 4181 2.031012 CTCCAAGACGCCTGTGCA 59.969 61.111 0.00 0.00 37.32 4.57
3690 4182 2.029844 GTCTCCAAGACGCCTGTGC 61.030 63.158 0.00 0.00 35.28 4.57
3691 4183 4.268687 GTCTCCAAGACGCCTGTG 57.731 61.111 0.00 0.00 35.28 3.66
3698 4190 0.966920 TCCTTCCACGTCTCCAAGAC 59.033 55.000 0.00 0.00 41.71 3.01
3699 4191 1.257743 CTCCTTCCACGTCTCCAAGA 58.742 55.000 0.00 0.00 0.00 3.02
3700 4192 0.969894 ACTCCTTCCACGTCTCCAAG 59.030 55.000 0.00 0.00 0.00 3.61
3701 4193 0.966920 GACTCCTTCCACGTCTCCAA 59.033 55.000 0.00 0.00 0.00 3.53
3702 4194 1.241990 CGACTCCTTCCACGTCTCCA 61.242 60.000 0.00 0.00 0.00 3.86
3703 4195 1.507174 CGACTCCTTCCACGTCTCC 59.493 63.158 0.00 0.00 0.00 3.71
3704 4196 0.959372 TCCGACTCCTTCCACGTCTC 60.959 60.000 0.00 0.00 0.00 3.36
3705 4197 1.074423 TCCGACTCCTTCCACGTCT 59.926 57.895 0.00 0.00 0.00 4.18
3706 4198 1.212229 GTCCGACTCCTTCCACGTC 59.788 63.158 0.00 0.00 0.00 4.34
3707 4199 2.623915 CGTCCGACTCCTTCCACGT 61.624 63.158 0.00 0.00 0.00 4.49
3822 4320 6.149308 TGCACTTCATCAAACACTTACTATGG 59.851 38.462 0.00 0.00 0.00 2.74
3846 4344 1.588404 CGAACACTTACTATGCGCCTG 59.412 52.381 4.18 0.00 0.00 4.85
3856 4354 6.032460 GCTTATGCATTTTGTCGAACACTTAC 59.968 38.462 3.54 0.00 39.41 2.34
3900 4400 2.127708 AGCCGATCCCCTGAAGTTAAT 58.872 47.619 0.00 0.00 0.00 1.40
3913 4413 2.273370 TTTGTCGTGTCTAGCCGATC 57.727 50.000 3.01 0.00 35.30 3.69
3915 4415 1.338973 AGTTTTGTCGTGTCTAGCCGA 59.661 47.619 0.00 0.00 0.00 5.54
4076 4576 3.195661 CGTTTACAGGCTTAGACCATCC 58.804 50.000 0.00 0.00 0.00 3.51
4154 4654 2.479560 GGAATGATAACCAACGCCAAGC 60.480 50.000 0.00 0.00 0.00 4.01
4155 4655 3.016736 AGGAATGATAACCAACGCCAAG 58.983 45.455 0.00 0.00 0.00 3.61
4156 4656 3.080300 AGGAATGATAACCAACGCCAA 57.920 42.857 0.00 0.00 0.00 4.52
4157 4657 2.752354 CAAGGAATGATAACCAACGCCA 59.248 45.455 0.00 0.00 0.00 5.69
4158 4658 2.752903 ACAAGGAATGATAACCAACGCC 59.247 45.455 0.00 0.00 0.00 5.68
4159 4659 4.412207 GAACAAGGAATGATAACCAACGC 58.588 43.478 0.00 0.00 0.00 4.84
4160 4660 4.390603 TCGAACAAGGAATGATAACCAACG 59.609 41.667 0.00 0.00 0.00 4.10
4161 4661 5.873179 TCGAACAAGGAATGATAACCAAC 57.127 39.130 0.00 0.00 0.00 3.77
4162 4662 6.885952 TTTCGAACAAGGAATGATAACCAA 57.114 33.333 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.