Multiple sequence alignment - TraesCS2B01G273700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G273700 chr2B 100.000 7914 0 0 1 7914 375178562 375170649 0.000000e+00 14615.0
1 TraesCS2B01G273700 chr2D 96.679 2710 38 9 1438 4099 199138418 199135713 0.000000e+00 4458.0
2 TraesCS2B01G273700 chr2D 97.808 1642 27 2 4220 5860 199135675 199134042 0.000000e+00 2824.0
3 TraesCS2B01G273700 chr2D 97.690 909 20 1 5964 6872 199134052 199133145 0.000000e+00 1561.0
4 TraesCS2B01G273700 chr2D 91.809 940 48 6 6975 7914 199131357 199130447 0.000000e+00 1282.0
5 TraesCS2B01G273700 chr2D 88.783 945 88 12 3 943 199142726 199141796 0.000000e+00 1142.0
6 TraesCS2B01G273700 chr2D 94.353 425 18 5 1016 1437 199139179 199138758 0.000000e+00 647.0
7 TraesCS2B01G273700 chr2D 89.706 68 7 0 6136 6203 172397368 172397435 3.930000e-13 87.9
8 TraesCS2B01G273700 chr2D 85.000 60 9 0 5945 6004 629436957 629437016 2.380000e-05 62.1
9 TraesCS2B01G273700 chr2A 96.462 2544 45 17 1438 3943 218145576 218143040 0.000000e+00 4157.0
10 TraesCS2B01G273700 chr2A 96.387 1716 24 5 4164 5877 218142280 218140601 0.000000e+00 2791.0
11 TraesCS2B01G273700 chr2A 98.416 884 14 0 5989 6872 218140547 218139664 0.000000e+00 1555.0
12 TraesCS2B01G273700 chr2A 92.073 1047 48 15 6873 7914 218137932 218136916 0.000000e+00 1441.0
13 TraesCS2B01G273700 chr2A 89.121 1103 110 7 1 1098 218151508 218150411 0.000000e+00 1363.0
14 TraesCS2B01G273700 chr2A 95.870 339 12 2 1086 1424 218146226 218145890 1.500000e-151 547.0
15 TraesCS2B01G273700 chr2A 97.222 252 4 3 3917 4168 218142861 218142613 2.640000e-114 424.0
16 TraesCS2B01G273700 chr2A 79.412 544 98 11 7308 7843 632381865 632381328 9.700000e-99 372.0
17 TraesCS2B01G273700 chr2A 85.207 169 20 3 6873 7036 142184573 142184741 1.370000e-37 169.0
18 TraesCS2B01G273700 chr4A 86.762 491 54 8 4891 5374 626343872 626343386 3.250000e-148 536.0
19 TraesCS2B01G273700 chr4A 77.589 705 90 42 2131 2785 626346642 626345956 1.620000e-96 364.0
20 TraesCS2B01G273700 chr4A 88.085 235 25 2 3159 3393 626345484 626345253 7.820000e-70 276.0
21 TraesCS2B01G273700 chr4A 86.307 241 23 10 4051 4288 673448042 673447809 3.670000e-63 254.0
22 TraesCS2B01G273700 chr4A 83.607 244 22 13 3605 3833 626344938 626344698 6.220000e-51 213.0
23 TraesCS2B01G273700 chr4A 86.747 166 17 2 6876 7036 504220234 504220399 6.310000e-41 180.0
24 TraesCS2B01G273700 chr4A 85.625 160 16 5 6874 7027 512543395 512543237 2.290000e-35 161.0
25 TraesCS2B01G273700 chr4A 87.719 57 5 2 5968 6023 281694800 281694745 1.840000e-06 65.8
26 TraesCS2B01G273700 chr5D 82.871 613 83 14 4775 5374 542659252 542659855 1.510000e-146 531.0
27 TraesCS2B01G273700 chr5D 80.859 559 94 11 7247 7799 341686455 341687006 2.040000e-115 427.0
28 TraesCS2B01G273700 chr5D 80.224 536 95 10 7307 7837 245206799 245206270 7.440000e-105 392.0
29 TraesCS2B01G273700 chr5D 78.218 707 86 42 2131 2788 542656580 542657267 2.680000e-104 390.0
30 TraesCS2B01G273700 chr5D 83.117 385 42 13 5627 6006 119765096 119765462 5.920000e-86 329.0
31 TraesCS2B01G273700 chr5D 84.074 270 27 10 3605 3861 542658283 542658549 6.130000e-61 246.0
32 TraesCS2B01G273700 chr7B 78.255 722 134 21 7199 7906 453941736 453942448 7.290000e-120 442.0
33 TraesCS2B01G273700 chr5B 85.034 441 56 9 4939 5373 684380409 684380845 2.620000e-119 440.0
34 TraesCS2B01G273700 chr5B 87.660 235 24 3 3159 3393 684378428 684378657 1.310000e-67 268.0
35 TraesCS2B01G273700 chr5B 83.830 235 29 6 3605 3834 684379120 684379350 1.730000e-51 215.0
36 TraesCS2B01G273700 chr5B 83.128 243 31 7 2585 2818 684377685 684377926 6.220000e-51 213.0
37 TraesCS2B01G273700 chr5B 82.743 226 21 4 5629 5853 133009057 133009265 1.360000e-42 185.0
38 TraesCS2B01G273700 chr5B 78.899 218 44 2 5553 5769 559183409 559183193 6.400000e-31 147.0
39 TraesCS2B01G273700 chr7A 77.907 688 136 13 7223 7902 188033214 188032535 1.590000e-111 414.0
40 TraesCS2B01G273700 chr7A 92.118 203 12 4 4054 4254 83785026 83784826 4.670000e-72 283.0
41 TraesCS2B01G273700 chr7A 84.024 169 19 6 6870 7032 85900111 85899945 1.060000e-33 156.0
42 TraesCS2B01G273700 chr7A 81.818 198 25 6 6017 6211 642032328 642032517 1.060000e-33 156.0
43 TraesCS2B01G273700 chr4D 78.689 610 112 14 7307 7906 425538210 425538811 2.680000e-104 390.0
44 TraesCS2B01G273700 chr4D 93.583 187 12 0 4064 4250 482703444 482703630 6.050000e-71 279.0
45 TraesCS2B01G273700 chr6B 80.469 512 88 10 7338 7843 107816579 107817084 1.610000e-101 381.0
46 TraesCS2B01G273700 chr6B 94.022 184 10 1 4064 4247 225525368 225525550 2.180000e-70 278.0
47 TraesCS2B01G273700 chr6B 84.024 169 22 3 6873 7036 26227783 26227951 2.960000e-34 158.0
48 TraesCS2B01G273700 chr3D 94.444 180 10 0 4064 4243 422517613 422517792 2.180000e-70 278.0
49 TraesCS2B01G273700 chr3D 78.325 203 29 10 6027 6219 15671076 15670879 5.020000e-22 117.0
50 TraesCS2B01G273700 chr3D 90.476 63 4 2 7146 7206 40188703 40188765 1.830000e-11 82.4
51 TraesCS2B01G273700 chr6A 92.593 189 14 0 4064 4252 153373069 153372881 1.010000e-68 272.0
52 TraesCS2B01G273700 chr3A 87.234 235 23 6 4031 4262 642038721 642038951 2.190000e-65 261.0
53 TraesCS2B01G273700 chr3B 87.273 220 26 2 4036 4254 473396883 473397101 4.740000e-62 250.0
54 TraesCS2B01G273700 chr1A 85.976 164 19 3 6876 7035 533144912 533144749 1.060000e-38 172.0
55 TraesCS2B01G273700 chr1A 80.000 120 18 4 6079 6194 13263293 13263176 5.090000e-12 84.2
56 TraesCS2B01G273700 chr4B 85.207 169 20 5 6873 7036 128563568 128563736 1.370000e-37 169.0
57 TraesCS2B01G273700 chr4B 84.663 163 19 3 6873 7031 269175664 269175824 2.960000e-34 158.0
58 TraesCS2B01G273700 chr4B 92.105 38 3 0 322 359 13907025 13906988 4.000000e-03 54.7
59 TraesCS2B01G273700 chrUn 77.612 201 33 7 6024 6218 28775145 28774951 2.330000e-20 111.0
60 TraesCS2B01G273700 chr1D 93.651 63 4 0 6153 6215 59526247 59526309 2.350000e-15 95.3
61 TraesCS2B01G273700 chr1D 87.013 77 10 0 6134 6210 10852138 10852062 3.930000e-13 87.9
62 TraesCS2B01G273700 chr1D 83.824 68 10 1 5934 6000 287468675 287468608 6.630000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G273700 chr2B 375170649 375178562 7913 True 14615.000000 14615 100.000000 1 7914 1 chr2B.!!$R1 7913
1 TraesCS2B01G273700 chr2D 199130447 199142726 12279 True 1985.666667 4458 94.520333 3 7914 6 chr2D.!!$R1 7911
2 TraesCS2B01G273700 chr2A 218136916 218146226 9310 True 1819.166667 4157 96.071667 1086 7914 6 chr2A.!!$R3 6828
3 TraesCS2B01G273700 chr2A 218150411 218151508 1097 True 1363.000000 1363 89.121000 1 1098 1 chr2A.!!$R1 1097
4 TraesCS2B01G273700 chr2A 632381328 632381865 537 True 372.000000 372 79.412000 7308 7843 1 chr2A.!!$R2 535
5 TraesCS2B01G273700 chr4A 626343386 626346642 3256 True 347.250000 536 84.010750 2131 5374 4 chr4A.!!$R4 3243
6 TraesCS2B01G273700 chr5D 341686455 341687006 551 False 427.000000 427 80.859000 7247 7799 1 chr5D.!!$F2 552
7 TraesCS2B01G273700 chr5D 245206270 245206799 529 True 392.000000 392 80.224000 7307 7837 1 chr5D.!!$R1 530
8 TraesCS2B01G273700 chr5D 542656580 542659855 3275 False 389.000000 531 81.721000 2131 5374 3 chr5D.!!$F3 3243
9 TraesCS2B01G273700 chr7B 453941736 453942448 712 False 442.000000 442 78.255000 7199 7906 1 chr7B.!!$F1 707
10 TraesCS2B01G273700 chr5B 684377685 684380845 3160 False 284.000000 440 84.913000 2585 5373 4 chr5B.!!$F2 2788
11 TraesCS2B01G273700 chr7A 188032535 188033214 679 True 414.000000 414 77.907000 7223 7902 1 chr7A.!!$R3 679
12 TraesCS2B01G273700 chr4D 425538210 425538811 601 False 390.000000 390 78.689000 7307 7906 1 chr4D.!!$F1 599
13 TraesCS2B01G273700 chr6B 107816579 107817084 505 False 381.000000 381 80.469000 7338 7843 1 chr6B.!!$F2 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.250295 TGTTTCCTCGTGCTTCCTGG 60.250 55.000 0.0 0.0 0.0 4.45 F
1169 3720 0.320421 TTTCCCAGCGACGAAAGAGG 60.320 55.000 0.0 0.0 0.0 3.69 F
1197 3748 0.401356 TGAAGTTGCTGCCAGATCCA 59.599 50.000 0.0 0.0 0.0 3.41 F
1200 3751 0.622136 AGTTGCTGCCAGATCCATCA 59.378 50.000 0.0 0.0 0.0 3.07 F
1201 3752 1.214673 AGTTGCTGCCAGATCCATCAT 59.785 47.619 0.0 0.0 0.0 2.45 F
1760 4654 1.753073 GTAGTAGCTGGGCGGAAAGTA 59.247 52.381 0.0 0.0 0.0 2.24 F
4109 8113 0.038892 GCTGTTGCCTTGTGACCATG 60.039 55.000 0.0 0.0 0.0 3.66 F
4198 8622 0.035458 CAAAGTGCTCGGACCCTTCT 59.965 55.000 0.0 0.0 0.0 2.85 F
4215 8639 0.108585 TCTCTGGACCCTGCACAAAC 59.891 55.000 0.0 0.0 0.0 2.93 F
5941 11283 0.108898 CTCTCTCTTGTCCGGCACTG 60.109 60.000 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1187 3738 0.032540 CGACGATGATGGATCTGGCA 59.967 55.000 0.00 0.0 0.00 4.92 R
2529 5437 4.436050 GGAAGTAACACATCTCACATTGCG 60.436 45.833 0.00 0.0 0.00 4.85 R
2917 5977 4.899457 TGTGACCCGGATATCAAAGAGTAT 59.101 41.667 0.73 0.0 0.00 2.12 R
3791 7551 5.670792 TCCGAACAGTACTTTCCATACAT 57.329 39.130 0.00 0.0 0.00 2.29 R
3955 7917 1.873591 CACTAACAAACAAGCTCGGCT 59.126 47.619 0.00 0.0 42.56 5.52 R
4179 8603 0.035458 AGAAGGGTCCGAGCACTTTG 59.965 55.000 0.00 0.0 0.00 2.77 R
5922 11264 0.108898 CAGTGCCGGACAAGAGAGAG 60.109 60.000 5.05 0.0 0.00 3.20 R
5924 11266 0.389166 GTCAGTGCCGGACAAGAGAG 60.389 60.000 5.05 0.0 35.36 3.20 R
5973 11315 0.397564 TACAACCGGACCCCTCAAAC 59.602 55.000 9.46 0.0 0.00 2.93 R
7864 16499 2.076100 TCTATTGTTGTGAGCAAGCCG 58.924 47.619 0.00 0.0 34.94 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.593196 TTGTTTCCTCGTGCTTCCTG 58.407 50.000 0.00 0.00 0.00 3.86
26 27 0.250295 TGTTTCCTCGTGCTTCCTGG 60.250 55.000 0.00 0.00 0.00 4.45
51 52 7.040686 GGACTTTTTGCTCTTGAATAGGTTGTA 60.041 37.037 0.00 0.00 0.00 2.41
88 89 5.897377 ACACTAATTATGGTGGCTTTGTC 57.103 39.130 9.06 0.00 41.94 3.18
92 93 6.010219 ACTAATTATGGTGGCTTTGTCTTGT 58.990 36.000 0.00 0.00 0.00 3.16
112 113 5.514274 TGTTGCCTTAGTTTCTTTTCCAG 57.486 39.130 0.00 0.00 0.00 3.86
180 182 5.639506 ACGATTATGTGTGAAAACTGAGAGG 59.360 40.000 0.00 0.00 0.00 3.69
186 188 2.091885 TGTGAAAACTGAGAGGGCCTTT 60.092 45.455 7.89 0.00 0.00 3.11
187 189 2.959030 GTGAAAACTGAGAGGGCCTTTT 59.041 45.455 7.89 2.26 0.00 2.27
199 201 1.961394 GGGCCTTTTCGAACTTTCCTT 59.039 47.619 0.84 0.00 0.00 3.36
212 214 8.215926 TCGAACTTTCCTTATGAACTTGAAAA 57.784 30.769 0.00 0.00 31.05 2.29
269 271 2.658268 GCGGCAGTTGCAACAACC 60.658 61.111 30.11 26.63 44.36 3.77
329 331 2.479656 CTAGTTACTACTAGCCGAGGCG 59.520 54.545 8.63 0.00 45.33 5.52
347 349 1.664873 CGGTCTAGTCCTCATCGTCA 58.335 55.000 4.46 0.00 0.00 4.35
377 379 1.210967 TCCTCCTTGTCGGTGTTTGTT 59.789 47.619 0.00 0.00 0.00 2.83
399 401 1.355043 AGGTAGTTGAGTCCCTCGTCT 59.645 52.381 0.00 0.00 32.35 4.18
401 403 2.561858 GGTAGTTGAGTCCCTCGTCTTT 59.438 50.000 0.00 0.00 32.35 2.52
408 410 1.550976 AGTCCCTCGTCTTTGATCCAC 59.449 52.381 0.00 0.00 0.00 4.02
424 426 1.673665 CACAGACCAAGGCTCCAGC 60.674 63.158 0.00 0.00 41.14 4.85
461 463 1.590259 CGAGCTCGCCCTTCTTAGC 60.590 63.158 25.07 0.00 35.16 3.09
489 491 2.100605 AAGCGAGAAGATTGACCCAC 57.899 50.000 0.00 0.00 0.00 4.61
492 494 1.084370 CGAGAAGATTGACCCACCGC 61.084 60.000 0.00 0.00 0.00 5.68
516 518 1.815421 CTCCCCTTCATCGGTTGCG 60.815 63.158 0.00 0.00 0.00 4.85
528 530 4.038080 GTTGCGGGGGCAAACTCG 62.038 66.667 2.72 0.00 0.00 4.18
548 550 1.524482 GGAGATGCTCCTCCGCTTT 59.476 57.895 6.23 0.00 46.41 3.51
635 637 3.447025 GATGAGGACGAAGGGGGCG 62.447 68.421 0.00 0.00 0.00 6.13
696 698 1.007387 CAGTGCTTCAAAACCGGGC 60.007 57.895 6.32 0.00 0.00 6.13
715 717 2.427453 GGCTATGACGTGAAGAGGAAGA 59.573 50.000 0.00 0.00 0.00 2.87
778 780 1.492176 CACTCCATACCAGGCTTCCAT 59.508 52.381 0.00 0.00 0.00 3.41
782 784 4.416848 ACTCCATACCAGGCTTCCATAAAT 59.583 41.667 0.00 0.00 0.00 1.40
785 787 5.833131 TCCATACCAGGCTTCCATAAATTTC 59.167 40.000 0.00 0.00 0.00 2.17
790 792 7.732222 ACCAGGCTTCCATAAATTTCAAATA 57.268 32.000 0.00 0.00 0.00 1.40
813 815 8.816640 ATATGAAAGCTACCAGTTTGTTTTTG 57.183 30.769 0.00 0.00 0.00 2.44
825 827 4.082463 AGTTTGTTTTTGAAACGAGCTCCA 60.082 37.500 8.47 0.00 38.18 3.86
836 838 9.997482 TTTGAAACGAGCTCCATAAATTATAAC 57.003 29.630 8.47 0.00 0.00 1.89
839 841 7.404139 AACGAGCTCCATAAATTATAACGAC 57.596 36.000 8.47 0.00 0.00 4.34
840 842 5.924825 ACGAGCTCCATAAATTATAACGACC 59.075 40.000 8.47 0.00 0.00 4.79
841 843 5.924254 CGAGCTCCATAAATTATAACGACCA 59.076 40.000 8.47 0.00 0.00 4.02
842 844 6.089551 CGAGCTCCATAAATTATAACGACCAG 59.910 42.308 8.47 0.00 0.00 4.00
843 845 7.062749 AGCTCCATAAATTATAACGACCAGA 57.937 36.000 0.00 0.00 0.00 3.86
858 863 4.142004 ACGACCAGAACACATATAAGGACC 60.142 45.833 0.00 0.00 0.00 4.46
867 872 9.670442 AGAACACATATAAGGACCCTATAAGAA 57.330 33.333 0.39 0.00 0.00 2.52
888 893 6.719365 AGAATGCGAGTTATGAGTTATTTGC 58.281 36.000 0.00 0.00 0.00 3.68
949 954 3.364964 GCAAGTTTGGTGTTAGGATCACG 60.365 47.826 0.00 0.00 36.76 4.35
950 955 3.764237 AGTTTGGTGTTAGGATCACGT 57.236 42.857 0.00 0.00 36.76 4.49
1001 1006 1.520192 CCCGTCGGATCATGTTCCA 59.480 57.895 20.31 7.11 35.34 3.53
1009 1014 1.667724 GGATCATGTTCCAACGCTCAG 59.332 52.381 16.54 0.00 35.72 3.35
1047 3596 1.745232 ACCTTCACTCGTTTTGCACA 58.255 45.000 0.00 0.00 0.00 4.57
1051 3600 3.181501 CCTTCACTCGTTTTGCACAAAGA 60.182 43.478 1.35 1.35 0.00 2.52
1056 3605 0.593773 CGTTTTGCACAAAGACCCCG 60.594 55.000 0.00 0.00 0.00 5.73
1075 3626 1.518102 CGCAAGCACAACAAACACATC 59.482 47.619 0.00 0.00 0.00 3.06
1076 3627 2.538437 GCAAGCACAACAAACACATCA 58.462 42.857 0.00 0.00 0.00 3.07
1102 3653 2.359975 CCCCGCTGTGTTCTTCCC 60.360 66.667 0.00 0.00 0.00 3.97
1108 3659 1.611673 CGCTGTGTTCTTCCCCATCTT 60.612 52.381 0.00 0.00 0.00 2.40
1164 3715 1.153353 GTGATTTTCCCAGCGACGAA 58.847 50.000 0.00 0.00 0.00 3.85
1169 3720 0.320421 TTTCCCAGCGACGAAAGAGG 60.320 55.000 0.00 0.00 0.00 3.69
1184 3735 4.331108 GAAAGAGGCTGGATTCTGAAGTT 58.669 43.478 0.00 0.00 0.00 2.66
1185 3736 3.347077 AGAGGCTGGATTCTGAAGTTG 57.653 47.619 0.00 0.00 0.00 3.16
1186 3737 1.742268 GAGGCTGGATTCTGAAGTTGC 59.258 52.381 0.00 0.00 0.00 4.17
1187 3738 1.353694 AGGCTGGATTCTGAAGTTGCT 59.646 47.619 0.00 0.00 0.00 3.91
1190 3741 1.471684 CTGGATTCTGAAGTTGCTGCC 59.528 52.381 0.00 0.00 0.00 4.85
1191 3742 1.202915 TGGATTCTGAAGTTGCTGCCA 60.203 47.619 0.00 0.00 0.00 4.92
1192 3743 1.471684 GGATTCTGAAGTTGCTGCCAG 59.528 52.381 0.00 0.00 0.00 4.85
1193 3744 2.430465 GATTCTGAAGTTGCTGCCAGA 58.570 47.619 0.00 0.00 34.25 3.86
1194 3745 2.574006 TTCTGAAGTTGCTGCCAGAT 57.426 45.000 0.00 0.00 35.82 2.90
1196 3747 1.093159 CTGAAGTTGCTGCCAGATCC 58.907 55.000 0.00 0.00 0.00 3.36
1197 3748 0.401356 TGAAGTTGCTGCCAGATCCA 59.599 50.000 0.00 0.00 0.00 3.41
1198 3749 1.005097 TGAAGTTGCTGCCAGATCCAT 59.995 47.619 0.00 0.00 0.00 3.41
1200 3751 0.622136 AGTTGCTGCCAGATCCATCA 59.378 50.000 0.00 0.00 0.00 3.07
1201 3752 1.214673 AGTTGCTGCCAGATCCATCAT 59.785 47.619 0.00 0.00 0.00 2.45
1360 3911 7.421530 TTTCTTGACTTTGAATCGGAAGTAG 57.578 36.000 2.52 0.00 36.31 2.57
1387 3938 8.159447 CCATTCCTCTATGAAATGTTCCTGATA 58.841 37.037 0.00 0.00 0.00 2.15
1405 3956 5.209818 TGATAGGAACGGTCAATATGGAC 57.790 43.478 1.31 1.10 37.06 4.02
1738 4632 6.365970 AACTGAGACAGATTCACAGGTTAT 57.634 37.500 5.76 0.00 39.64 1.89
1760 4654 1.753073 GTAGTAGCTGGGCGGAAAGTA 59.247 52.381 0.00 0.00 0.00 2.24
2180 5074 9.134734 GTTGTGTTTCTGAAGTTAAATTGAACA 57.865 29.630 8.43 0.00 0.00 3.18
2398 5306 6.205784 CCAAACACAATGATAACAACGACTT 58.794 36.000 0.00 0.00 0.00 3.01
2529 5437 5.590530 ATTGCGTCTATCCTATCCTGATC 57.409 43.478 0.00 0.00 0.00 2.92
2965 6149 2.046285 AGGCGCTATGTGTTTGCCC 61.046 57.895 7.64 0.00 46.92 5.36
2966 6150 2.339556 GGCGCTATGTGTTTGCCCA 61.340 57.895 7.64 0.00 39.83 5.36
3791 7551 7.267128 GGGATTTTATCATTCATTCACAGCAA 58.733 34.615 0.00 0.00 0.00 3.91
3955 7917 4.280677 GGTTGTCCCATCAAAAGATTGTGA 59.719 41.667 0.00 0.00 37.79 3.58
4099 8103 3.668386 GCGGTAAAGCTGTTGCCT 58.332 55.556 11.70 0.00 40.80 4.75
4100 8104 1.956802 GCGGTAAAGCTGTTGCCTT 59.043 52.632 11.70 0.00 40.80 4.35
4101 8105 0.387239 GCGGTAAAGCTGTTGCCTTG 60.387 55.000 11.70 2.30 40.80 3.61
4102 8106 0.951558 CGGTAAAGCTGTTGCCTTGT 59.048 50.000 11.70 0.00 40.80 3.16
4103 8107 1.334960 CGGTAAAGCTGTTGCCTTGTG 60.335 52.381 11.70 0.00 40.80 3.33
4104 8108 1.953686 GGTAAAGCTGTTGCCTTGTGA 59.046 47.619 7.98 0.00 40.80 3.58
4105 8109 2.287608 GGTAAAGCTGTTGCCTTGTGAC 60.288 50.000 7.98 0.00 40.80 3.67
4106 8110 0.746659 AAAGCTGTTGCCTTGTGACC 59.253 50.000 0.00 0.00 40.80 4.02
4107 8111 0.395586 AAGCTGTTGCCTTGTGACCA 60.396 50.000 0.00 0.00 40.80 4.02
4108 8112 0.178981 AGCTGTTGCCTTGTGACCAT 60.179 50.000 0.00 0.00 40.80 3.55
4109 8113 0.038892 GCTGTTGCCTTGTGACCATG 60.039 55.000 0.00 0.00 0.00 3.66
4110 8114 1.608055 CTGTTGCCTTGTGACCATGA 58.392 50.000 0.00 0.00 0.00 3.07
4111 8115 1.538512 CTGTTGCCTTGTGACCATGAG 59.461 52.381 0.00 0.00 0.00 2.90
4112 8116 0.883833 GTTGCCTTGTGACCATGAGG 59.116 55.000 0.00 0.00 42.21 3.86
4156 8580 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
4157 8581 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
4158 8582 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
4159 8583 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
4160 8584 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
4161 8585 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
4162 8586 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
4163 8587 2.446435 TGCAGAAATGTAGGGAAAGGC 58.554 47.619 0.00 0.00 0.00 4.35
4164 8588 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
4165 8589 3.092301 GCAGAAATGTAGGGAAAGGCTT 58.908 45.455 0.00 0.00 0.00 4.35
4166 8590 3.511540 GCAGAAATGTAGGGAAAGGCTTT 59.488 43.478 13.25 13.25 0.00 3.51
4167 8591 4.619160 GCAGAAATGTAGGGAAAGGCTTTG 60.619 45.833 18.79 0.00 0.00 2.77
4168 8592 4.524328 CAGAAATGTAGGGAAAGGCTTTGT 59.476 41.667 18.79 4.30 0.00 2.83
4169 8593 5.710099 CAGAAATGTAGGGAAAGGCTTTGTA 59.290 40.000 18.79 3.28 0.00 2.41
4170 8594 5.710567 AGAAATGTAGGGAAAGGCTTTGTAC 59.289 40.000 18.79 15.22 0.00 2.90
4171 8595 4.650972 ATGTAGGGAAAGGCTTTGTACA 57.349 40.909 18.79 19.75 0.00 2.90
4172 8596 4.440826 TGTAGGGAAAGGCTTTGTACAA 57.559 40.909 18.79 3.59 0.00 2.41
4173 8597 4.794334 TGTAGGGAAAGGCTTTGTACAAA 58.206 39.130 18.79 19.53 0.00 2.83
4174 8598 5.202004 TGTAGGGAAAGGCTTTGTACAAAA 58.798 37.500 18.79 6.43 0.00 2.44
4175 8599 4.937201 AGGGAAAGGCTTTGTACAAAAG 57.063 40.909 18.79 15.42 0.00 2.27
4176 8600 4.542697 AGGGAAAGGCTTTGTACAAAAGA 58.457 39.130 18.79 0.38 0.00 2.52
4177 8601 4.341235 AGGGAAAGGCTTTGTACAAAAGAC 59.659 41.667 18.79 16.42 35.53 3.01
4178 8602 4.500887 GGGAAAGGCTTTGTACAAAAGACC 60.501 45.833 18.79 20.21 35.91 3.85
4179 8603 4.500887 GGAAAGGCTTTGTACAAAAGACCC 60.501 45.833 18.79 17.09 35.91 4.46
4180 8604 3.306472 AGGCTTTGTACAAAAGACCCA 57.694 42.857 20.89 0.00 35.91 4.51
4181 8605 3.637769 AGGCTTTGTACAAAAGACCCAA 58.362 40.909 20.89 0.00 35.91 4.12
4182 8606 4.027437 AGGCTTTGTACAAAAGACCCAAA 58.973 39.130 20.89 0.00 35.91 3.28
4183 8607 4.099419 AGGCTTTGTACAAAAGACCCAAAG 59.901 41.667 20.89 7.95 42.92 2.77
4184 8608 4.142026 GGCTTTGTACAAAAGACCCAAAGT 60.142 41.667 20.89 0.00 42.35 2.66
4185 8609 4.803613 GCTTTGTACAAAAGACCCAAAGTG 59.196 41.667 20.89 6.91 42.35 3.16
4186 8610 4.379339 TTGTACAAAAGACCCAAAGTGC 57.621 40.909 5.64 0.00 0.00 4.40
4187 8611 3.626930 TGTACAAAAGACCCAAAGTGCT 58.373 40.909 0.00 0.00 0.00 4.40
4188 8612 3.630312 TGTACAAAAGACCCAAAGTGCTC 59.370 43.478 0.00 0.00 0.00 4.26
4189 8613 1.676006 ACAAAAGACCCAAAGTGCTCG 59.324 47.619 0.00 0.00 0.00 5.03
4190 8614 1.001378 CAAAAGACCCAAAGTGCTCGG 60.001 52.381 0.00 0.00 0.00 4.63
4191 8615 0.472471 AAAGACCCAAAGTGCTCGGA 59.528 50.000 0.00 0.00 0.00 4.55
4192 8616 0.250338 AAGACCCAAAGTGCTCGGAC 60.250 55.000 0.00 0.00 0.00 4.79
4193 8617 1.671379 GACCCAAAGTGCTCGGACC 60.671 63.158 0.00 0.00 0.00 4.46
4194 8618 2.359975 CCCAAAGTGCTCGGACCC 60.360 66.667 0.00 0.00 0.00 4.46
4195 8619 2.750350 CCAAAGTGCTCGGACCCT 59.250 61.111 0.00 0.00 0.00 4.34
4196 8620 1.073199 CCAAAGTGCTCGGACCCTT 59.927 57.895 0.00 0.00 0.00 3.95
4197 8621 0.955919 CCAAAGTGCTCGGACCCTTC 60.956 60.000 0.00 0.00 0.00 3.46
4198 8622 0.035458 CAAAGTGCTCGGACCCTTCT 59.965 55.000 0.00 0.00 0.00 2.85
4199 8623 0.321996 AAAGTGCTCGGACCCTTCTC 59.678 55.000 0.00 0.00 0.00 2.87
4200 8624 0.543174 AAGTGCTCGGACCCTTCTCT 60.543 55.000 0.00 0.00 0.00 3.10
4201 8625 1.216710 GTGCTCGGACCCTTCTCTG 59.783 63.158 0.00 0.00 0.00 3.35
4202 8626 1.984570 TGCTCGGACCCTTCTCTGG 60.985 63.158 0.00 0.00 0.00 3.86
4203 8627 1.682684 GCTCGGACCCTTCTCTGGA 60.683 63.158 0.00 0.00 0.00 3.86
4204 8628 1.950973 GCTCGGACCCTTCTCTGGAC 61.951 65.000 0.00 0.00 0.00 4.02
4205 8629 1.305046 TCGGACCCTTCTCTGGACC 60.305 63.158 0.00 0.00 0.00 4.46
4206 8630 2.359967 CGGACCCTTCTCTGGACCC 61.360 68.421 0.00 0.00 0.00 4.46
4207 8631 1.081277 GGACCCTTCTCTGGACCCT 59.919 63.158 0.00 0.00 0.00 4.34
4208 8632 1.268283 GGACCCTTCTCTGGACCCTG 61.268 65.000 0.00 0.00 0.00 4.45
4209 8633 1.904990 GACCCTTCTCTGGACCCTGC 61.905 65.000 0.00 0.00 0.00 4.85
4210 8634 1.920325 CCCTTCTCTGGACCCTGCA 60.920 63.158 0.00 0.00 0.00 4.41
4211 8635 1.298014 CCTTCTCTGGACCCTGCAC 59.702 63.158 0.00 0.00 0.00 4.57
4212 8636 1.483595 CCTTCTCTGGACCCTGCACA 61.484 60.000 0.00 0.00 0.00 4.57
4213 8637 0.397941 CTTCTCTGGACCCTGCACAA 59.602 55.000 0.00 0.00 0.00 3.33
4214 8638 0.843309 TTCTCTGGACCCTGCACAAA 59.157 50.000 0.00 0.00 0.00 2.83
4215 8639 0.108585 TCTCTGGACCCTGCACAAAC 59.891 55.000 0.00 0.00 0.00 2.93
4216 8640 1.227823 TCTGGACCCTGCACAAACG 60.228 57.895 0.00 0.00 0.00 3.60
4217 8641 2.203280 TGGACCCTGCACAAACGG 60.203 61.111 0.00 0.00 0.00 4.44
4218 8642 2.983592 GGACCCTGCACAAACGGG 60.984 66.667 6.43 6.43 43.79 5.28
4219 8643 2.112297 GACCCTGCACAAACGGGA 59.888 61.111 14.61 0.00 40.55 5.14
4220 8644 1.966451 GACCCTGCACAAACGGGAG 60.966 63.158 14.61 0.00 40.55 4.30
4502 8926 8.900781 AGCATAGATTATTCCACATATTCATGC 58.099 33.333 0.00 0.00 35.39 4.06
4621 9045 5.414454 TGCACTAATTTAACACCTGGTGATC 59.586 40.000 32.30 6.75 36.96 2.92
4734 10001 3.068165 CAGCATCACATTTCTGGCATGAT 59.932 43.478 0.00 0.00 0.00 2.45
4762 10029 7.119387 CCCTTGATCCTAAAACTCCTATTGTT 58.881 38.462 0.00 0.00 0.00 2.83
4854 10133 6.665474 TTTTTGCATCCATTTATCATGTGC 57.335 33.333 0.00 0.00 0.00 4.57
4868 10147 5.876651 ATCATGTGCTGATAGTAAGTCCA 57.123 39.130 0.00 0.00 42.96 4.02
4937 10271 4.058817 GCTTATCCTGGTAGATGGTTTCG 58.941 47.826 0.00 0.00 0.00 3.46
5597 10937 0.902516 TGGGAAAATTTGGCCCCTCG 60.903 55.000 20.85 0.00 41.31 4.63
5794 11136 2.234414 GTGGTGGGTCAAATCCTACGTA 59.766 50.000 0.00 0.00 39.39 3.57
5887 11229 4.987122 TGGGGACAAAATTGGGGG 57.013 55.556 0.00 0.00 37.44 5.40
5909 11251 4.191243 GGGGGTTCCAGTTTGGTG 57.809 61.111 0.00 0.00 39.03 4.17
5910 11252 2.207229 GGGGGTTCCAGTTTGGTGC 61.207 63.158 0.00 0.00 39.03 5.01
5911 11253 2.207229 GGGGTTCCAGTTTGGTGCC 61.207 63.158 0.00 0.00 39.03 5.01
5912 11254 2.207229 GGGTTCCAGTTTGGTGCCC 61.207 63.158 11.68 11.68 42.01 5.36
5913 11255 1.152546 GGTTCCAGTTTGGTGCCCT 60.153 57.895 0.00 0.00 39.03 5.19
5914 11256 0.759060 GGTTCCAGTTTGGTGCCCTT 60.759 55.000 0.00 0.00 39.03 3.95
5915 11257 1.119684 GTTCCAGTTTGGTGCCCTTT 58.880 50.000 0.00 0.00 39.03 3.11
5916 11258 1.484653 GTTCCAGTTTGGTGCCCTTTT 59.515 47.619 0.00 0.00 39.03 2.27
5917 11259 1.872773 TCCAGTTTGGTGCCCTTTTT 58.127 45.000 0.00 0.00 39.03 1.94
5918 11260 1.760029 TCCAGTTTGGTGCCCTTTTTC 59.240 47.619 0.00 0.00 39.03 2.29
5919 11261 1.202639 CCAGTTTGGTGCCCTTTTTCC 60.203 52.381 0.00 0.00 31.35 3.13
5920 11262 1.762370 CAGTTTGGTGCCCTTTTTCCT 59.238 47.619 0.00 0.00 0.00 3.36
5921 11263 2.170397 CAGTTTGGTGCCCTTTTTCCTT 59.830 45.455 0.00 0.00 0.00 3.36
5922 11264 2.434336 AGTTTGGTGCCCTTTTTCCTTC 59.566 45.455 0.00 0.00 0.00 3.46
5923 11265 2.434336 GTTTGGTGCCCTTTTTCCTTCT 59.566 45.455 0.00 0.00 0.00 2.85
5924 11266 1.995376 TGGTGCCCTTTTTCCTTCTC 58.005 50.000 0.00 0.00 0.00 2.87
5925 11267 1.499007 TGGTGCCCTTTTTCCTTCTCT 59.501 47.619 0.00 0.00 0.00 3.10
5926 11268 2.163509 GGTGCCCTTTTTCCTTCTCTC 58.836 52.381 0.00 0.00 0.00 3.20
5927 11269 2.224892 GGTGCCCTTTTTCCTTCTCTCT 60.225 50.000 0.00 0.00 0.00 3.10
5928 11270 3.078097 GTGCCCTTTTTCCTTCTCTCTC 58.922 50.000 0.00 0.00 0.00 3.20
5929 11271 2.982488 TGCCCTTTTTCCTTCTCTCTCT 59.018 45.455 0.00 0.00 0.00 3.10
5930 11272 3.395941 TGCCCTTTTTCCTTCTCTCTCTT 59.604 43.478 0.00 0.00 0.00 2.85
5931 11273 3.755905 GCCCTTTTTCCTTCTCTCTCTTG 59.244 47.826 0.00 0.00 0.00 3.02
5932 11274 4.748239 GCCCTTTTTCCTTCTCTCTCTTGT 60.748 45.833 0.00 0.00 0.00 3.16
5933 11275 5.000591 CCCTTTTTCCTTCTCTCTCTTGTC 58.999 45.833 0.00 0.00 0.00 3.18
5934 11276 5.000591 CCTTTTTCCTTCTCTCTCTTGTCC 58.999 45.833 0.00 0.00 0.00 4.02
5935 11277 3.944055 TTTCCTTCTCTCTCTTGTCCG 57.056 47.619 0.00 0.00 0.00 4.79
5936 11278 1.840737 TCCTTCTCTCTCTTGTCCGG 58.159 55.000 0.00 0.00 0.00 5.14
5937 11279 0.174617 CCTTCTCTCTCTTGTCCGGC 59.825 60.000 0.00 0.00 0.00 6.13
5938 11280 0.891373 CTTCTCTCTCTTGTCCGGCA 59.109 55.000 0.00 0.00 0.00 5.69
5939 11281 0.603569 TTCTCTCTCTTGTCCGGCAC 59.396 55.000 0.00 0.00 0.00 5.01
5940 11282 0.251386 TCTCTCTCTTGTCCGGCACT 60.251 55.000 0.00 0.00 0.00 4.40
5941 11283 0.108898 CTCTCTCTTGTCCGGCACTG 60.109 60.000 0.00 0.00 0.00 3.66
5942 11284 0.539669 TCTCTCTTGTCCGGCACTGA 60.540 55.000 0.00 0.00 0.00 3.41
5943 11285 0.389166 CTCTCTTGTCCGGCACTGAC 60.389 60.000 0.00 0.00 42.98 3.51
5944 11286 1.374758 CTCTTGTCCGGCACTGACC 60.375 63.158 0.00 0.00 41.98 4.02
5973 11315 2.672996 CCAGACGTTTGGGGGCAG 60.673 66.667 17.22 0.00 34.46 4.85
6000 11342 0.527817 GGTCCGGTTGTAGATGCTCG 60.528 60.000 0.00 0.00 0.00 5.03
6514 11856 5.048434 AGGCTATTTCTTCTGTTCTGTTTGC 60.048 40.000 0.00 0.00 0.00 3.68
6919 13992 2.764010 ACAACATTCAGCCATGCATGAT 59.236 40.909 28.31 13.19 34.17 2.45
6920 13993 3.196901 ACAACATTCAGCCATGCATGATT 59.803 39.130 28.31 12.41 34.17 2.57
6921 13994 4.188462 CAACATTCAGCCATGCATGATTT 58.812 39.130 28.31 9.82 34.17 2.17
7126 15735 3.609853 TCCAATGGAGGAAAGTTCATCG 58.390 45.455 0.00 0.00 38.77 3.84
7164 15773 5.367352 TGGAACTTCTTCCTTGTGTTACCTA 59.633 40.000 1.34 0.00 45.87 3.08
7206 15815 2.437413 CCCACTCTAACCTTTTGCTCC 58.563 52.381 0.00 0.00 0.00 4.70
7207 15816 2.040412 CCCACTCTAACCTTTTGCTCCT 59.960 50.000 0.00 0.00 0.00 3.69
7208 15817 3.339141 CCACTCTAACCTTTTGCTCCTC 58.661 50.000 0.00 0.00 0.00 3.71
7209 15818 3.339141 CACTCTAACCTTTTGCTCCTCC 58.661 50.000 0.00 0.00 0.00 4.30
7210 15819 2.979678 ACTCTAACCTTTTGCTCCTCCA 59.020 45.455 0.00 0.00 0.00 3.86
7211 15820 3.394606 ACTCTAACCTTTTGCTCCTCCAA 59.605 43.478 0.00 0.00 0.00 3.53
7212 15821 4.006319 CTCTAACCTTTTGCTCCTCCAAG 58.994 47.826 0.00 0.00 0.00 3.61
7213 15822 2.755952 AACCTTTTGCTCCTCCAAGT 57.244 45.000 0.00 0.00 0.00 3.16
7216 15825 2.959030 ACCTTTTGCTCCTCCAAGTTTC 59.041 45.455 0.00 0.00 0.00 2.78
7220 15829 5.278512 CCTTTTGCTCCTCCAAGTTTCTAAC 60.279 44.000 0.00 0.00 0.00 2.34
7304 15916 7.895759 TCATCATCATTCGTCACATCCTTATA 58.104 34.615 0.00 0.00 0.00 0.98
7334 15947 7.933577 CACAAGCTCATCATAACCCTTATTCTA 59.066 37.037 0.00 0.00 0.00 2.10
7578 16196 0.537188 ATGCTAGAACACCAGGACGG 59.463 55.000 0.00 0.00 42.50 4.79
7784 16416 4.736473 TCTACCCATGTATGCTACAGCTA 58.264 43.478 2.44 0.00 42.77 3.32
7864 16499 6.019779 TGCCATACCATGAAAAACTGTTAC 57.980 37.500 0.00 0.00 0.00 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.683385 AGCAAAAAGTCCAGGAAGCAC 59.317 47.619 0.00 0.00 0.00 4.40
25 26 5.966742 ACCTATTCAAGAGCAAAAAGTCC 57.033 39.130 0.00 0.00 0.00 3.85
26 27 6.739112 ACAACCTATTCAAGAGCAAAAAGTC 58.261 36.000 0.00 0.00 0.00 3.01
88 89 5.901552 TGGAAAAGAAACTAAGGCAACAAG 58.098 37.500 0.00 0.00 41.41 3.16
92 93 4.215109 AGCTGGAAAAGAAACTAAGGCAA 58.785 39.130 0.00 0.00 0.00 4.52
173 175 1.002544 AGTTCGAAAAGGCCCTCTCAG 59.997 52.381 0.00 0.00 0.00 3.35
180 182 4.457949 TCATAAGGAAAGTTCGAAAAGGCC 59.542 41.667 0.00 0.00 0.00 5.19
186 188 7.795482 TTCAAGTTCATAAGGAAAGTTCGAA 57.205 32.000 0.00 0.00 37.23 3.71
187 189 7.795482 TTTCAAGTTCATAAGGAAAGTTCGA 57.205 32.000 0.00 0.00 37.23 3.71
238 240 1.082104 GCCGCCTTTTCAAGTCACG 60.082 57.895 0.00 0.00 0.00 4.35
253 255 1.140589 TTGGTTGTTGCAACTGCCG 59.859 52.632 28.61 0.00 41.18 5.69
258 260 4.935885 TCATTTTGTTGGTTGTTGCAAC 57.064 36.364 22.83 22.83 0.00 4.17
269 271 7.168138 CGATGTTGCATATGTTCATTTTGTTG 58.832 34.615 4.29 0.00 0.00 3.33
329 331 2.554893 GGATGACGATGAGGACTAGACC 59.445 54.545 2.68 2.68 0.00 3.85
347 349 2.192263 GACAAGGAGGAGGACAAGGAT 58.808 52.381 0.00 0.00 0.00 3.24
399 401 1.425066 AGCCTTGGTCTGTGGATCAAA 59.575 47.619 0.00 0.00 41.39 2.69
401 403 0.615331 GAGCCTTGGTCTGTGGATCA 59.385 55.000 0.00 0.00 36.41 2.92
408 410 2.435586 CGCTGGAGCCTTGGTCTG 60.436 66.667 0.00 0.00 37.91 3.51
424 426 2.432628 GGAAGAGTGTGCCCGTCG 60.433 66.667 0.00 0.00 0.00 5.12
432 434 1.928706 GCGAGCTCGAGGAAGAGTGT 61.929 60.000 38.74 0.00 43.02 3.55
461 463 2.126463 TTCTCGCTTGTCGCTCCG 60.126 61.111 0.00 0.00 38.27 4.63
470 472 1.339151 GGTGGGTCAATCTTCTCGCTT 60.339 52.381 0.00 0.00 0.00 4.68
485 487 4.785453 GGGAGAAGCAGCGGTGGG 62.785 72.222 17.54 0.00 0.00 4.61
487 489 3.259633 AAGGGGAGAAGCAGCGGTG 62.260 63.158 10.98 10.98 0.00 4.94
488 490 2.930562 AAGGGGAGAAGCAGCGGT 60.931 61.111 0.00 0.00 0.00 5.68
489 491 2.124942 GAAGGGGAGAAGCAGCGG 60.125 66.667 0.00 0.00 0.00 5.52
492 494 0.179062 CCGATGAAGGGGAGAAGCAG 60.179 60.000 0.00 0.00 0.00 4.24
516 518 2.198304 ATCTCCACGAGTTTGCCCCC 62.198 60.000 0.00 0.00 0.00 5.40
635 637 1.889530 CGTCCCTCTGTTGTCCCCTC 61.890 65.000 0.00 0.00 0.00 4.30
674 676 1.134175 CCGGTTTTGAAGCACTGTTGT 59.866 47.619 0.00 0.00 0.00 3.32
696 698 5.106118 TGTCTTCTTCCTCTTCACGTCATAG 60.106 44.000 0.00 0.00 0.00 2.23
764 766 7.732222 TTTGAAATTTATGGAAGCCTGGTAT 57.268 32.000 0.00 0.00 0.00 2.73
782 784 8.637986 ACAAACTGGTAGCTTTCATATTTGAAA 58.362 29.630 20.22 10.37 46.88 2.69
785 787 8.816640 AAACAAACTGGTAGCTTTCATATTTG 57.183 30.769 15.95 15.95 0.00 2.32
790 792 6.872920 TCAAAAACAAACTGGTAGCTTTCAT 58.127 32.000 0.00 0.00 0.00 2.57
795 797 5.099575 CGTTTCAAAAACAAACTGGTAGCT 58.900 37.500 0.00 0.00 32.46 3.32
801 803 4.265320 GGAGCTCGTTTCAAAAACAAACTG 59.735 41.667 7.83 0.00 32.46 3.16
804 806 4.442375 TGGAGCTCGTTTCAAAAACAAA 57.558 36.364 7.83 0.00 0.00 2.83
813 815 8.002665 GTCGTTATAATTTATGGAGCTCGTTTC 58.997 37.037 7.83 0.00 0.00 2.78
836 838 4.369182 GGTCCTTATATGTGTTCTGGTCG 58.631 47.826 0.00 0.00 0.00 4.79
839 841 6.688073 ATAGGGTCCTTATATGTGTTCTGG 57.312 41.667 0.00 0.00 0.00 3.86
840 842 9.090103 TCTTATAGGGTCCTTATATGTGTTCTG 57.910 37.037 11.49 0.00 0.00 3.02
841 843 9.670442 TTCTTATAGGGTCCTTATATGTGTTCT 57.330 33.333 11.49 0.00 0.00 3.01
854 859 4.338379 AACTCGCATTCTTATAGGGTCC 57.662 45.455 0.00 0.00 0.00 4.46
858 863 9.862371 ATAACTCATAACTCGCATTCTTATAGG 57.138 33.333 0.00 0.00 0.00 2.57
867 872 4.881273 TGGCAAATAACTCATAACTCGCAT 59.119 37.500 0.00 0.00 0.00 4.73
920 925 3.896648 AACACCAAACTTGCGTCATAG 57.103 42.857 0.00 0.00 0.00 2.23
921 926 3.749088 CCTAACACCAAACTTGCGTCATA 59.251 43.478 0.00 0.00 0.00 2.15
927 932 3.364964 CGTGATCCTAACACCAAACTTGC 60.365 47.826 0.00 0.00 35.17 4.01
949 954 8.778358 AGAAGTTTTCATCTGTCTCATTTACAC 58.222 33.333 0.00 0.00 0.00 2.90
950 955 8.777413 CAGAAGTTTTCATCTGTCTCATTTACA 58.223 33.333 0.00 0.00 39.77 2.41
1009 1014 0.755698 TAGGGCTGAGGTGGTCGATC 60.756 60.000 0.00 0.00 0.00 3.69
1047 3596 1.454847 TTGTGCTTGCGGGGTCTTT 60.455 52.632 0.00 0.00 0.00 2.52
1051 3600 2.055042 TTTGTTGTGCTTGCGGGGT 61.055 52.632 0.00 0.00 0.00 4.95
1056 3605 2.282290 GTGATGTGTTTGTTGTGCTTGC 59.718 45.455 0.00 0.00 0.00 4.01
1102 3653 2.046023 TGCGCAGTGGGAAGATGG 60.046 61.111 5.66 0.00 0.00 3.51
1149 3700 1.508632 CTCTTTCGTCGCTGGGAAAA 58.491 50.000 0.00 0.00 32.27 2.29
1164 3715 3.683802 CAACTTCAGAATCCAGCCTCTT 58.316 45.455 0.00 0.00 0.00 2.85
1169 3720 1.135460 GCAGCAACTTCAGAATCCAGC 60.135 52.381 0.00 0.00 0.00 4.85
1184 3735 0.250166 CGATGATGGATCTGGCAGCA 60.250 55.000 10.34 2.26 0.00 4.41
1185 3736 0.250209 ACGATGATGGATCTGGCAGC 60.250 55.000 10.34 0.00 0.00 5.25
1186 3737 1.793258 GACGATGATGGATCTGGCAG 58.207 55.000 8.58 8.58 0.00 4.85
1187 3738 0.032540 CGACGATGATGGATCTGGCA 59.967 55.000 0.00 0.00 0.00 4.92
1190 3741 0.676184 ACCCGACGATGATGGATCTG 59.324 55.000 0.00 0.00 0.00 2.90
1191 3742 0.962489 GACCCGACGATGATGGATCT 59.038 55.000 0.00 0.00 0.00 2.75
1192 3743 0.038159 GGACCCGACGATGATGGATC 60.038 60.000 0.00 0.00 0.00 3.36
1193 3744 0.470080 AGGACCCGACGATGATGGAT 60.470 55.000 0.00 0.00 0.00 3.41
1194 3745 1.076265 AGGACCCGACGATGATGGA 60.076 57.895 0.00 0.00 0.00 3.41
1196 3747 1.592669 GCAGGACCCGACGATGATG 60.593 63.158 0.00 0.00 0.00 3.07
1197 3748 1.739338 GAGCAGGACCCGACGATGAT 61.739 60.000 0.00 0.00 0.00 2.45
1198 3749 2.362503 AGCAGGACCCGACGATGA 60.363 61.111 0.00 0.00 0.00 2.92
1200 3751 3.148279 GGAGCAGGACCCGACGAT 61.148 66.667 0.00 0.00 0.00 3.73
1201 3752 4.361971 AGGAGCAGGACCCGACGA 62.362 66.667 0.00 0.00 0.00 4.20
1360 3911 5.009410 CAGGAACATTTCATAGAGGAATGGC 59.991 44.000 1.61 0.00 0.00 4.40
1387 3938 2.104967 TCGTCCATATTGACCGTTCCT 58.895 47.619 1.56 0.00 31.35 3.36
1405 3956 5.947228 AATATGTGGCTCCATACAAATCG 57.053 39.130 0.00 0.00 30.47 3.34
1738 4632 0.905809 TTTCCGCCCAGCTACTACCA 60.906 55.000 0.00 0.00 0.00 3.25
1760 4654 7.613022 TCAAACTAATTGAGCAGGATCTGAAAT 59.387 33.333 0.00 0.00 43.08 2.17
2147 5041 9.880157 TTTAACTTCAGAAACACAACTACTACT 57.120 29.630 0.00 0.00 0.00 2.57
2180 5074 7.041372 ACAAATACAAGTAGACGCTGTCAAAAT 60.041 33.333 10.52 0.00 34.60 1.82
2244 5139 7.967890 TTCATACTAATGTGATGGCTGTATG 57.032 36.000 0.00 0.00 37.90 2.39
2460 5368 5.351465 CCAATCGAAAGTAGCATTACAGTGT 59.649 40.000 0.00 0.00 31.96 3.55
2529 5437 4.436050 GGAAGTAACACATCTCACATTGCG 60.436 45.833 0.00 0.00 0.00 4.85
2917 5977 4.899457 TGTGACCCGGATATCAAAGAGTAT 59.101 41.667 0.73 0.00 0.00 2.12
3791 7551 5.670792 TCCGAACAGTACTTTCCATACAT 57.329 39.130 0.00 0.00 0.00 2.29
3955 7917 1.873591 CACTAACAAACAAGCTCGGCT 59.126 47.619 0.00 0.00 42.56 5.52
4106 8110 0.458543 CTCGAACCCGTGACCTCATG 60.459 60.000 0.00 0.00 37.05 3.07
4107 8111 0.898789 ACTCGAACCCGTGACCTCAT 60.899 55.000 0.00 0.00 37.05 2.90
4108 8112 1.521450 GACTCGAACCCGTGACCTCA 61.521 60.000 0.00 0.00 37.05 3.86
4109 8113 1.212229 GACTCGAACCCGTGACCTC 59.788 63.158 0.00 0.00 37.05 3.85
4110 8114 2.273912 GGACTCGAACCCGTGACCT 61.274 63.158 0.00 0.00 39.62 3.85
4111 8115 2.260743 GGACTCGAACCCGTGACC 59.739 66.667 0.00 0.00 37.08 4.02
4112 8116 1.080705 CAGGACTCGAACCCGTGAC 60.081 63.158 4.92 0.00 37.05 3.67
4113 8117 2.273179 CCAGGACTCGAACCCGTGA 61.273 63.158 4.92 0.00 37.05 4.35
4114 8118 1.812686 TTCCAGGACTCGAACCCGTG 61.813 60.000 0.00 0.64 37.05 4.94
4115 8119 1.117142 TTTCCAGGACTCGAACCCGT 61.117 55.000 0.00 0.00 37.05 5.28
4156 8580 4.500887 GGGTCTTTTGTACAAAGCCTTTCC 60.501 45.833 24.64 19.12 0.00 3.13
4157 8581 4.098807 TGGGTCTTTTGTACAAAGCCTTTC 59.901 41.667 24.64 15.62 0.00 2.62
4158 8582 4.027437 TGGGTCTTTTGTACAAAGCCTTT 58.973 39.130 24.64 0.00 0.00 3.11
4159 8583 3.637769 TGGGTCTTTTGTACAAAGCCTT 58.362 40.909 24.64 0.00 0.00 4.35
4160 8584 3.306472 TGGGTCTTTTGTACAAAGCCT 57.694 42.857 24.64 0.00 0.00 4.58
4161 8585 4.368315 CTTTGGGTCTTTTGTACAAAGCC 58.632 43.478 19.72 20.41 40.75 4.35
4164 8588 4.464597 AGCACTTTGGGTCTTTTGTACAAA 59.535 37.500 17.01 17.01 0.00 2.83
4165 8589 4.020543 AGCACTTTGGGTCTTTTGTACAA 58.979 39.130 3.59 3.59 0.00 2.41
4166 8590 3.626930 AGCACTTTGGGTCTTTTGTACA 58.373 40.909 0.00 0.00 0.00 2.90
4167 8591 3.303791 CGAGCACTTTGGGTCTTTTGTAC 60.304 47.826 0.00 0.00 33.24 2.90
4168 8592 2.875933 CGAGCACTTTGGGTCTTTTGTA 59.124 45.455 0.00 0.00 33.24 2.41
4169 8593 1.676006 CGAGCACTTTGGGTCTTTTGT 59.324 47.619 0.00 0.00 33.24 2.83
4170 8594 1.001378 CCGAGCACTTTGGGTCTTTTG 60.001 52.381 0.00 0.00 33.24 2.44
4171 8595 1.133915 TCCGAGCACTTTGGGTCTTTT 60.134 47.619 0.00 0.00 33.24 2.27
4172 8596 0.472471 TCCGAGCACTTTGGGTCTTT 59.528 50.000 0.00 0.00 33.24 2.52
4173 8597 0.250338 GTCCGAGCACTTTGGGTCTT 60.250 55.000 0.00 0.00 33.24 3.01
4174 8598 1.371558 GTCCGAGCACTTTGGGTCT 59.628 57.895 0.00 0.00 33.24 3.85
4175 8599 1.671379 GGTCCGAGCACTTTGGGTC 60.671 63.158 0.00 0.00 0.00 4.46
4176 8600 2.430367 GGTCCGAGCACTTTGGGT 59.570 61.111 0.00 0.00 0.00 4.51
4177 8601 2.359975 GGGTCCGAGCACTTTGGG 60.360 66.667 0.00 0.00 0.00 4.12
4178 8602 0.955919 GAAGGGTCCGAGCACTTTGG 60.956 60.000 0.00 0.00 0.00 3.28
4179 8603 0.035458 AGAAGGGTCCGAGCACTTTG 59.965 55.000 0.00 0.00 0.00 2.77
4180 8604 0.321996 GAGAAGGGTCCGAGCACTTT 59.678 55.000 0.00 0.00 0.00 2.66
4181 8605 0.543174 AGAGAAGGGTCCGAGCACTT 60.543 55.000 0.00 0.92 0.00 3.16
4182 8606 1.077625 AGAGAAGGGTCCGAGCACT 59.922 57.895 0.00 0.00 0.00 4.40
4183 8607 1.216710 CAGAGAAGGGTCCGAGCAC 59.783 63.158 0.00 0.00 0.00 4.40
4184 8608 1.984570 CCAGAGAAGGGTCCGAGCA 60.985 63.158 0.00 0.00 0.00 4.26
4185 8609 1.682684 TCCAGAGAAGGGTCCGAGC 60.683 63.158 0.00 0.00 0.00 5.03
4186 8610 1.324005 GGTCCAGAGAAGGGTCCGAG 61.324 65.000 0.00 0.00 0.00 4.63
4187 8611 1.305046 GGTCCAGAGAAGGGTCCGA 60.305 63.158 0.00 0.00 0.00 4.55
4188 8612 2.359967 GGGTCCAGAGAAGGGTCCG 61.360 68.421 0.00 0.00 0.00 4.79
4189 8613 1.081277 AGGGTCCAGAGAAGGGTCC 59.919 63.158 0.00 0.00 0.00 4.46
4190 8614 1.904990 GCAGGGTCCAGAGAAGGGTC 61.905 65.000 0.00 0.00 0.00 4.46
4191 8615 1.920835 GCAGGGTCCAGAGAAGGGT 60.921 63.158 0.00 0.00 0.00 4.34
4192 8616 1.920325 TGCAGGGTCCAGAGAAGGG 60.920 63.158 0.00 0.00 0.00 3.95
4193 8617 1.298014 GTGCAGGGTCCAGAGAAGG 59.702 63.158 0.00 0.00 0.00 3.46
4194 8618 0.397941 TTGTGCAGGGTCCAGAGAAG 59.602 55.000 0.00 0.00 0.00 2.85
4195 8619 0.843309 TTTGTGCAGGGTCCAGAGAA 59.157 50.000 0.00 0.00 0.00 2.87
4196 8620 0.108585 GTTTGTGCAGGGTCCAGAGA 59.891 55.000 0.00 0.00 0.00 3.10
4197 8621 1.230635 CGTTTGTGCAGGGTCCAGAG 61.231 60.000 0.00 0.00 0.00 3.35
4198 8622 1.227823 CGTTTGTGCAGGGTCCAGA 60.228 57.895 0.00 0.00 0.00 3.86
4199 8623 2.260869 CCGTTTGTGCAGGGTCCAG 61.261 63.158 0.00 0.00 0.00 3.86
4200 8624 2.203280 CCGTTTGTGCAGGGTCCA 60.203 61.111 0.00 0.00 0.00 4.02
4201 8625 2.983592 CCCGTTTGTGCAGGGTCC 60.984 66.667 0.00 0.00 40.27 4.46
4202 8626 1.966451 CTCCCGTTTGTGCAGGGTC 60.966 63.158 7.78 0.00 45.27 4.46
4203 8627 2.113139 CTCCCGTTTGTGCAGGGT 59.887 61.111 7.78 0.00 45.27 4.34
4204 8628 2.463589 TAGCTCCCGTTTGTGCAGGG 62.464 60.000 1.42 1.42 46.40 4.45
4205 8629 1.003839 TAGCTCCCGTTTGTGCAGG 60.004 57.895 0.00 0.00 0.00 4.85
4206 8630 1.626654 CGTAGCTCCCGTTTGTGCAG 61.627 60.000 0.00 0.00 0.00 4.41
4207 8631 1.666553 CGTAGCTCCCGTTTGTGCA 60.667 57.895 0.00 0.00 0.00 4.57
4208 8632 1.666872 ACGTAGCTCCCGTTTGTGC 60.667 57.895 5.60 0.00 34.28 4.57
4209 8633 1.897398 GCACGTAGCTCCCGTTTGTG 61.897 60.000 8.49 1.48 41.15 3.33
4210 8634 1.666872 GCACGTAGCTCCCGTTTGT 60.667 57.895 8.49 0.00 41.15 2.83
4211 8635 1.666553 TGCACGTAGCTCCCGTTTG 60.667 57.895 8.49 1.20 45.94 2.93
4212 8636 1.666872 GTGCACGTAGCTCCCGTTT 60.667 57.895 0.00 0.00 45.94 3.60
4213 8637 2.048503 GTGCACGTAGCTCCCGTT 60.049 61.111 0.00 0.00 45.94 4.44
4734 10001 4.175962 AGGAGTTTTAGGATCAAGGGTCA 58.824 43.478 0.00 0.00 0.00 4.02
4762 10029 9.618890 AATCATAAATCTTCTTCGGAATTCTCA 57.381 29.630 5.23 0.00 33.06 3.27
4854 10133 3.695060 ACGACAGGTGGACTTACTATCAG 59.305 47.826 0.00 0.00 0.00 2.90
4868 10147 3.393800 CAATCAGAACAGAACGACAGGT 58.606 45.455 0.00 0.00 0.00 4.00
5532 10872 6.202516 TGTTTAGCAGCTTGTACAAAAAGT 57.797 33.333 10.03 0.00 0.00 2.66
5533 10873 6.738352 CTGTTTAGCAGCTTGTACAAAAAG 57.262 37.500 10.03 0.00 38.52 2.27
5892 11234 2.207229 GCACCAAACTGGAACCCCC 61.207 63.158 0.00 0.00 40.96 5.40
5893 11235 2.207229 GGCACCAAACTGGAACCCC 61.207 63.158 0.00 0.00 40.96 4.95
5894 11236 3.455152 GGCACCAAACTGGAACCC 58.545 61.111 0.00 0.00 40.96 4.11
5907 11249 3.078097 GAGAGAGAAGGAAAAAGGGCAC 58.922 50.000 0.00 0.00 0.00 5.01
5908 11250 2.982488 AGAGAGAGAAGGAAAAAGGGCA 59.018 45.455 0.00 0.00 0.00 5.36
5909 11251 3.712016 AGAGAGAGAAGGAAAAAGGGC 57.288 47.619 0.00 0.00 0.00 5.19
5910 11252 4.979335 ACAAGAGAGAGAAGGAAAAAGGG 58.021 43.478 0.00 0.00 0.00 3.95
5911 11253 5.000591 GGACAAGAGAGAGAAGGAAAAAGG 58.999 45.833 0.00 0.00 0.00 3.11
5912 11254 4.688413 CGGACAAGAGAGAGAAGGAAAAAG 59.312 45.833 0.00 0.00 0.00 2.27
5913 11255 4.503296 CCGGACAAGAGAGAGAAGGAAAAA 60.503 45.833 0.00 0.00 0.00 1.94
5914 11256 3.006967 CCGGACAAGAGAGAGAAGGAAAA 59.993 47.826 0.00 0.00 0.00 2.29
5915 11257 2.563179 CCGGACAAGAGAGAGAAGGAAA 59.437 50.000 0.00 0.00 0.00 3.13
5916 11258 2.171840 CCGGACAAGAGAGAGAAGGAA 58.828 52.381 0.00 0.00 0.00 3.36
5917 11259 1.840737 CCGGACAAGAGAGAGAAGGA 58.159 55.000 0.00 0.00 0.00 3.36
5918 11260 0.174617 GCCGGACAAGAGAGAGAAGG 59.825 60.000 5.05 0.00 0.00 3.46
5919 11261 0.891373 TGCCGGACAAGAGAGAGAAG 59.109 55.000 5.05 0.00 0.00 2.85
5920 11262 0.603569 GTGCCGGACAAGAGAGAGAA 59.396 55.000 5.05 0.00 0.00 2.87
5921 11263 0.251386 AGTGCCGGACAAGAGAGAGA 60.251 55.000 5.05 0.00 0.00 3.10
5922 11264 0.108898 CAGTGCCGGACAAGAGAGAG 60.109 60.000 5.05 0.00 0.00 3.20
5923 11265 0.539669 TCAGTGCCGGACAAGAGAGA 60.540 55.000 5.05 0.00 0.00 3.10
5924 11266 0.389166 GTCAGTGCCGGACAAGAGAG 60.389 60.000 5.05 0.00 35.36 3.20
5925 11267 1.666011 GTCAGTGCCGGACAAGAGA 59.334 57.895 5.05 0.00 35.36 3.10
5926 11268 1.374758 GGTCAGTGCCGGACAAGAG 60.375 63.158 5.05 0.00 37.00 2.85
5927 11269 2.741092 GGTCAGTGCCGGACAAGA 59.259 61.111 5.05 1.85 37.00 3.02
5956 11298 2.672996 CTGCCCCCAAACGTCTGG 60.673 66.667 0.00 0.00 36.10 3.86
5957 11299 1.106944 AAACTGCCCCCAAACGTCTG 61.107 55.000 0.00 0.00 0.00 3.51
5958 11300 1.106944 CAAACTGCCCCCAAACGTCT 61.107 55.000 0.00 0.00 0.00 4.18
5959 11301 1.104577 TCAAACTGCCCCCAAACGTC 61.105 55.000 0.00 0.00 0.00 4.34
5960 11302 1.076632 TCAAACTGCCCCCAAACGT 60.077 52.632 0.00 0.00 0.00 3.99
5961 11303 1.659794 CTCAAACTGCCCCCAAACG 59.340 57.895 0.00 0.00 0.00 3.60
5962 11304 1.471829 CCCTCAAACTGCCCCCAAAC 61.472 60.000 0.00 0.00 0.00 2.93
5963 11305 1.152355 CCCTCAAACTGCCCCCAAA 60.152 57.895 0.00 0.00 0.00 3.28
5964 11306 2.525592 CCCTCAAACTGCCCCCAA 59.474 61.111 0.00 0.00 0.00 4.12
5965 11307 3.589542 CCCCTCAAACTGCCCCCA 61.590 66.667 0.00 0.00 0.00 4.96
5966 11308 3.585525 GACCCCTCAAACTGCCCCC 62.586 68.421 0.00 0.00 0.00 5.40
5967 11309 2.035783 GACCCCTCAAACTGCCCC 59.964 66.667 0.00 0.00 0.00 5.80
5968 11310 2.035783 GGACCCCTCAAACTGCCC 59.964 66.667 0.00 0.00 0.00 5.36
5969 11311 2.359975 CGGACCCCTCAAACTGCC 60.360 66.667 0.00 0.00 0.00 4.85
5970 11312 2.359975 CCGGACCCCTCAAACTGC 60.360 66.667 0.00 0.00 0.00 4.40
5971 11313 0.889186 CAACCGGACCCCTCAAACTG 60.889 60.000 9.46 0.00 0.00 3.16
5972 11314 1.350310 ACAACCGGACCCCTCAAACT 61.350 55.000 9.46 0.00 0.00 2.66
5973 11315 0.397564 TACAACCGGACCCCTCAAAC 59.602 55.000 9.46 0.00 0.00 2.93
6642 11984 2.572191 TTGCTAGTATTCCCGTGTCG 57.428 50.000 0.00 0.00 0.00 4.35
7014 15623 8.050778 TGGTAAACTTGGATTGATAACATGAC 57.949 34.615 0.00 0.00 0.00 3.06
7090 15699 7.238305 TCCTCCATTGGATCATATGACTGTTAT 59.762 37.037 7.78 0.00 0.00 1.89
7105 15714 3.263170 TCGATGAACTTTCCTCCATTGGA 59.737 43.478 5.05 5.05 0.00 3.53
7126 15735 3.320673 AGTTCCACCTTCTTCGACATC 57.679 47.619 0.00 0.00 0.00 3.06
7206 15815 5.278512 GGAGCAAAAGGTTAGAAACTTGGAG 60.279 44.000 0.00 0.00 0.00 3.86
7207 15816 4.583073 GGAGCAAAAGGTTAGAAACTTGGA 59.417 41.667 0.00 0.00 0.00 3.53
7208 15817 4.584743 AGGAGCAAAAGGTTAGAAACTTGG 59.415 41.667 0.00 0.00 0.00 3.61
7209 15818 5.278512 GGAGGAGCAAAAGGTTAGAAACTTG 60.279 44.000 0.00 0.00 0.00 3.16
7210 15819 4.827835 GGAGGAGCAAAAGGTTAGAAACTT 59.172 41.667 0.00 0.00 0.00 2.66
7211 15820 4.141251 TGGAGGAGCAAAAGGTTAGAAACT 60.141 41.667 0.00 0.00 0.00 2.66
7212 15821 4.142038 TGGAGGAGCAAAAGGTTAGAAAC 58.858 43.478 0.00 0.00 0.00 2.78
7213 15822 4.447138 TGGAGGAGCAAAAGGTTAGAAA 57.553 40.909 0.00 0.00 0.00 2.52
7216 15825 3.756117 ACTTGGAGGAGCAAAAGGTTAG 58.244 45.455 0.00 0.00 0.00 2.34
7220 15829 2.958355 TGAAACTTGGAGGAGCAAAAGG 59.042 45.455 0.00 0.00 0.00 3.11
7304 15916 2.954318 GGTTATGATGAGCTTGTGCCAT 59.046 45.455 0.00 0.00 40.80 4.40
7528 16145 5.163754 GGAAAACCAAGTATCATCTCAACGG 60.164 44.000 0.00 0.00 0.00 4.44
7578 16196 5.180117 CCTAGTAGGTGTTGAATATGCATGC 59.820 44.000 11.82 11.82 0.00 4.06
7784 16416 2.485903 CGCTAGAGTATCGAGGTCACT 58.514 52.381 0.00 0.00 42.67 3.41
7864 16499 2.076100 TCTATTGTTGTGAGCAAGCCG 58.924 47.619 0.00 0.00 34.94 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.