Multiple sequence alignment - TraesCS2B01G273100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G273100 chr2B 100.000 7048 0 0 916 7963 374258012 374265059 0.000000e+00 13016
1 TraesCS2B01G273100 chr2B 100.000 491 0 0 1 491 374257097 374257587 0.000000e+00 907
2 TraesCS2B01G273100 chr2D 96.115 7105 163 32 916 7963 306339835 306346883 0.000000e+00 11487
3 TraesCS2B01G273100 chr2D 91.605 405 32 2 87 489 306339054 306339458 6.980000e-155 558
4 TraesCS2B01G273100 chr2A 95.541 4732 125 42 3252 7963 385446603 385451268 0.000000e+00 7491
5 TraesCS2B01G273100 chr2A 95.647 2343 67 7 939 3268 385444093 385446413 0.000000e+00 3729


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G273100 chr2B 374257097 374265059 7962 False 6961.5 13016 100.000 1 7963 2 chr2B.!!$F1 7962
1 TraesCS2B01G273100 chr2D 306339054 306346883 7829 False 6022.5 11487 93.860 87 7963 2 chr2D.!!$F1 7876
2 TraesCS2B01G273100 chr2A 385444093 385451268 7175 False 5610.0 7491 95.594 939 7963 2 chr2A.!!$F1 7024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.038709 GGCCTCAATCTCGATCTCCG 60.039 60.0 0.00 0.0 40.25 4.63 F
1918 1957 0.034059 CCTGTGGAGTCCTGTGTGAC 59.966 60.0 11.33 0.0 35.43 3.67 F
2041 2080 0.177141 TCAATCCGATGGGGTTCGTC 59.823 55.0 0.00 0.0 33.07 4.20 F
3415 3667 0.522626 TCTGTGCGCAAATGGATGTG 59.477 50.0 14.00 0.0 0.00 3.21 F
4713 4970 0.613777 GTGTCGTTCCCAGGATCCTT 59.386 55.0 13.00 0.0 0.00 3.36 F
6255 6515 0.905357 CCCCCTCGTTCAAGTCTGAT 59.095 55.0 0.00 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 2005 0.035317 TCAAGAACGCAGCACCTGAT 59.965 50.000 0.00 0.00 32.44 2.90 R
3399 3651 0.458889 ATGCACATCCATTTGCGCAC 60.459 50.000 11.12 0.00 41.96 5.34 R
3974 4231 0.537371 AGGGCTAGCCAACAACACAC 60.537 55.000 34.09 14.00 37.98 3.82 R
5050 5307 1.255882 CGGATCCAGATGAGCTAGCT 58.744 55.000 19.45 19.45 0.00 3.32 R
6264 6524 1.007038 CAGCAGCGCAACACCAAAT 60.007 52.632 11.47 0.00 0.00 2.32 R
7247 7510 0.538287 AACCTGAAGGCTTGGCTGAC 60.538 55.000 3.46 0.00 39.32 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.736739 TCTCCTTCTTCTCCGCGA 57.263 55.556 8.23 0.00 0.00 5.87
18 19 2.181584 TCTCCTTCTTCTCCGCGAC 58.818 57.895 8.23 0.00 0.00 5.19
19 20 1.139947 CTCCTTCTTCTCCGCGACC 59.860 63.158 8.23 0.00 0.00 4.79
20 21 2.202623 CCTTCTTCTCCGCGACCG 60.203 66.667 8.23 0.00 0.00 4.79
21 22 2.567049 CTTCTTCTCCGCGACCGT 59.433 61.111 8.23 0.00 0.00 4.83
22 23 1.514443 CTTCTTCTCCGCGACCGTC 60.514 63.158 8.23 0.00 0.00 4.79
23 24 3.318539 TTCTTCTCCGCGACCGTCG 62.319 63.158 16.72 16.72 43.89 5.12
24 25 4.099170 CTTCTCCGCGACCGTCGT 62.099 66.667 21.37 0.00 42.81 4.34
25 26 3.996744 CTTCTCCGCGACCGTCGTC 62.997 68.421 21.37 12.84 42.81 4.20
27 28 4.175489 CTCCGCGACCGTCGTCAT 62.175 66.667 21.37 0.00 42.81 3.06
28 29 4.170062 TCCGCGACCGTCGTCATC 62.170 66.667 21.37 4.65 42.81 2.92
29 30 4.175489 CCGCGACCGTCGTCATCT 62.175 66.667 21.37 0.00 42.81 2.90
30 31 2.648102 CGCGACCGTCGTCATCTC 60.648 66.667 21.37 3.60 42.81 2.75
31 32 2.792599 GCGACCGTCGTCATCTCT 59.207 61.111 21.37 0.00 42.81 3.10
32 33 1.759293 CGCGACCGTCGTCATCTCTA 61.759 60.000 21.37 0.00 42.81 2.43
33 34 0.587285 GCGACCGTCGTCATCTCTAT 59.413 55.000 21.37 0.00 42.81 1.98
34 35 1.660614 GCGACCGTCGTCATCTCTATG 60.661 57.143 21.37 0.00 42.81 2.23
35 36 1.598132 CGACCGTCGTCATCTCTATGT 59.402 52.381 12.91 0.00 39.11 2.29
36 37 2.348685 CGACCGTCGTCATCTCTATGTC 60.349 54.545 12.91 0.00 39.11 3.06
37 38 2.612672 GACCGTCGTCATCTCTATGTCA 59.387 50.000 0.00 0.00 38.99 3.58
38 39 2.614520 ACCGTCGTCATCTCTATGTCAG 59.385 50.000 0.00 0.00 34.50 3.51
39 40 2.872858 CCGTCGTCATCTCTATGTCAGA 59.127 50.000 0.00 0.00 34.50 3.27
40 41 3.312697 CCGTCGTCATCTCTATGTCAGAA 59.687 47.826 0.00 0.00 34.50 3.02
41 42 4.275662 CGTCGTCATCTCTATGTCAGAAC 58.724 47.826 0.00 0.00 34.50 3.01
42 43 4.602995 GTCGTCATCTCTATGTCAGAACC 58.397 47.826 0.00 0.00 34.50 3.62
43 44 3.312697 TCGTCATCTCTATGTCAGAACCG 59.687 47.826 0.00 0.00 34.50 4.44
44 45 3.312697 CGTCATCTCTATGTCAGAACCGA 59.687 47.826 0.00 0.00 34.50 4.69
45 46 4.023622 CGTCATCTCTATGTCAGAACCGAT 60.024 45.833 0.00 0.00 34.50 4.18
46 47 5.218885 GTCATCTCTATGTCAGAACCGATG 58.781 45.833 0.00 0.00 35.93 3.84
47 48 5.009110 GTCATCTCTATGTCAGAACCGATGA 59.991 44.000 0.00 0.00 38.88 2.92
48 49 5.594317 TCATCTCTATGTCAGAACCGATGAA 59.406 40.000 0.00 0.00 38.53 2.57
49 50 5.250235 TCTCTATGTCAGAACCGATGAAC 57.750 43.478 0.00 0.00 31.12 3.18
50 51 4.950475 TCTCTATGTCAGAACCGATGAACT 59.050 41.667 0.00 0.00 31.12 3.01
51 52 5.419155 TCTCTATGTCAGAACCGATGAACTT 59.581 40.000 0.00 0.00 31.12 2.66
52 53 5.651530 TCTATGTCAGAACCGATGAACTTC 58.348 41.667 0.00 0.00 0.00 3.01
53 54 3.744238 TGTCAGAACCGATGAACTTCA 57.256 42.857 0.00 0.00 0.00 3.02
54 55 3.390135 TGTCAGAACCGATGAACTTCAC 58.610 45.455 0.00 0.00 0.00 3.18
55 56 3.181470 TGTCAGAACCGATGAACTTCACA 60.181 43.478 0.00 0.00 0.00 3.58
56 57 3.997021 GTCAGAACCGATGAACTTCACAT 59.003 43.478 0.00 0.00 0.00 3.21
57 58 4.452455 GTCAGAACCGATGAACTTCACATT 59.548 41.667 0.00 0.00 0.00 2.71
58 59 4.452114 TCAGAACCGATGAACTTCACATTG 59.548 41.667 0.00 0.00 0.00 2.82
60 61 2.549633 CCGATGAACTTCACATTGGC 57.450 50.000 0.00 0.00 40.82 4.52
61 62 1.133025 CCGATGAACTTCACATTGGCC 59.867 52.381 0.00 0.00 40.82 5.36
62 63 2.086869 CGATGAACTTCACATTGGCCT 58.913 47.619 3.32 0.00 0.00 5.19
63 64 2.096496 CGATGAACTTCACATTGGCCTC 59.904 50.000 3.32 0.00 0.00 4.70
64 65 2.655090 TGAACTTCACATTGGCCTCA 57.345 45.000 3.32 0.00 0.00 3.86
65 66 2.942804 TGAACTTCACATTGGCCTCAA 58.057 42.857 3.32 0.00 37.28 3.02
66 67 3.499338 TGAACTTCACATTGGCCTCAAT 58.501 40.909 3.32 0.00 43.79 2.57
67 68 3.507233 TGAACTTCACATTGGCCTCAATC 59.493 43.478 3.32 0.00 41.29 2.67
68 69 3.446442 ACTTCACATTGGCCTCAATCT 57.554 42.857 3.32 0.00 41.29 2.40
69 70 3.350833 ACTTCACATTGGCCTCAATCTC 58.649 45.455 3.32 0.00 41.29 2.75
70 71 2.028420 TCACATTGGCCTCAATCTCG 57.972 50.000 3.32 0.00 41.29 4.04
71 72 1.554617 TCACATTGGCCTCAATCTCGA 59.445 47.619 3.32 0.00 41.29 4.04
72 73 2.171237 TCACATTGGCCTCAATCTCGAT 59.829 45.455 3.32 0.00 41.29 3.59
73 74 2.547211 CACATTGGCCTCAATCTCGATC 59.453 50.000 3.32 0.00 41.29 3.69
74 75 2.437281 ACATTGGCCTCAATCTCGATCT 59.563 45.455 3.32 0.00 41.29 2.75
75 76 2.898729 TTGGCCTCAATCTCGATCTC 57.101 50.000 3.32 0.00 0.00 2.75
76 77 1.043816 TGGCCTCAATCTCGATCTCC 58.956 55.000 3.32 0.00 0.00 3.71
77 78 0.038709 GGCCTCAATCTCGATCTCCG 60.039 60.000 0.00 0.00 40.25 4.63
78 79 0.955178 GCCTCAATCTCGATCTCCGA 59.045 55.000 0.00 0.00 46.35 4.55
102 103 2.105821 AGTTCAAGTCCCGATTTGGTCA 59.894 45.455 0.77 0.00 35.15 4.02
132 133 1.462791 CAACACGTTTTGTCGAAGGC 58.537 50.000 6.27 0.00 37.51 4.35
134 135 1.721133 CACGTTTTGTCGAAGGCGC 60.721 57.895 0.00 0.00 37.46 6.53
135 136 2.174969 ACGTTTTGTCGAAGGCGCA 61.175 52.632 10.83 0.00 37.46 6.09
153 154 2.045926 GGCGGTGATGTCTGGCTT 60.046 61.111 0.00 0.00 36.52 4.35
154 155 1.220749 GGCGGTGATGTCTGGCTTA 59.779 57.895 0.00 0.00 36.52 3.09
166 167 0.650512 CTGGCTTATTGTACGTGCCG 59.349 55.000 0.00 0.00 45.90 5.69
177 178 1.605971 TACGTGCCGAGCCAATACCA 61.606 55.000 0.00 0.00 0.00 3.25
186 187 0.108585 AGCCAATACCATACGCCCTG 59.891 55.000 0.00 0.00 0.00 4.45
191 192 3.611728 TACCATACGCCCTGGTACA 57.388 52.632 7.14 0.00 45.17 2.90
202 203 2.289945 GCCCTGGTACATGATCTCATCC 60.290 54.545 0.00 0.00 38.20 3.51
368 369 1.228003 ACGCGGGTTGTGGATTTCA 60.228 52.632 12.47 0.00 0.00 2.69
371 372 0.887933 GCGGGTTGTGGATTTCATGT 59.112 50.000 0.00 0.00 0.00 3.21
396 397 0.589229 GATACGACTGTGCCGACGAG 60.589 60.000 0.00 0.00 0.00 4.18
407 408 2.277628 CGACGAGCGAAGAGAGGC 60.278 66.667 0.00 0.00 44.57 4.70
411 412 2.498726 GAGCGAAGAGAGGCAGGG 59.501 66.667 0.00 0.00 0.00 4.45
489 492 2.351253 CGTGGGCAATCGAATTTTGTGA 60.351 45.455 0.00 0.00 0.00 3.58
490 493 2.986479 GTGGGCAATCGAATTTTGTGAC 59.014 45.455 0.00 0.00 0.00 3.67
936 939 4.653888 ACGGGAAGGGGCGGTTTG 62.654 66.667 0.00 0.00 0.00 2.93
976 979 1.203441 AGGCCTGTTGGAGATGCTCA 61.203 55.000 3.11 0.00 34.57 4.26
1015 1019 3.866703 TGACACATAAACACCCCAAGA 57.133 42.857 0.00 0.00 0.00 3.02
1112 1121 2.362077 ACAAAAATCTCTTGGTTGCGCT 59.638 40.909 9.73 0.00 0.00 5.92
1195 1204 4.779733 TCCGCCCCACTCTCCTCC 62.780 72.222 0.00 0.00 0.00 4.30
1268 1277 1.318158 GCATTTGCCCTCTCACCCAG 61.318 60.000 0.00 0.00 34.31 4.45
1585 1614 3.723922 TTTAGTGGGCGGGGCTCC 61.724 66.667 0.00 0.00 0.00 4.70
1644 1673 7.131907 AGGTTAAAAGCTGTGGGTTTTTATT 57.868 32.000 10.37 0.00 46.69 1.40
1738 1767 3.928727 TGCTCAAAGATTTGGCTCTTG 57.071 42.857 15.16 0.00 38.66 3.02
1764 1793 1.891919 GCACCGTGAAAGCAGGACA 60.892 57.895 1.65 0.00 31.73 4.02
1768 1797 1.346395 ACCGTGAAAGCAGGACATGTA 59.654 47.619 0.00 0.00 31.73 2.29
1774 1803 5.163953 CGTGAAAGCAGGACATGTAGTTAAG 60.164 44.000 0.00 0.00 31.73 1.85
1905 1944 3.128938 GCTGTGTCTACTAGTACCTGTGG 59.871 52.174 0.00 0.00 0.00 4.17
1906 1945 4.586884 CTGTGTCTACTAGTACCTGTGGA 58.413 47.826 0.00 0.00 0.00 4.02
1907 1946 4.586884 TGTGTCTACTAGTACCTGTGGAG 58.413 47.826 0.00 0.00 0.00 3.86
1908 1947 4.042560 TGTGTCTACTAGTACCTGTGGAGT 59.957 45.833 0.00 0.00 0.00 3.85
1909 1948 4.635324 GTGTCTACTAGTACCTGTGGAGTC 59.365 50.000 0.00 0.00 0.00 3.36
1910 1949 4.198530 GTCTACTAGTACCTGTGGAGTCC 58.801 52.174 0.73 0.73 0.00 3.85
1911 1950 4.080413 GTCTACTAGTACCTGTGGAGTCCT 60.080 50.000 11.33 0.00 0.00 3.85
1912 1951 3.088789 ACTAGTACCTGTGGAGTCCTG 57.911 52.381 11.33 0.62 0.00 3.86
1913 1952 2.379226 ACTAGTACCTGTGGAGTCCTGT 59.621 50.000 11.33 5.20 0.00 4.00
1914 1953 1.633774 AGTACCTGTGGAGTCCTGTG 58.366 55.000 11.33 0.00 0.00 3.66
1918 1957 0.034059 CCTGTGGAGTCCTGTGTGAC 59.966 60.000 11.33 0.00 35.43 3.67
1966 2005 3.870024 TTTCGCCCCGGGAAATGCA 62.870 57.895 26.32 4.76 39.04 3.96
2002 2041 1.200760 TGAGGCCTGCTAGCTTCCAA 61.201 55.000 12.00 4.38 38.04 3.53
2014 2053 0.811281 GCTTCCAATCTTTCCCGTGG 59.189 55.000 0.00 0.00 0.00 4.94
2021 2060 0.909610 ATCTTTCCCGTGGAGGAGCA 60.910 55.000 0.00 0.00 45.00 4.26
2041 2080 0.177141 TCAATCCGATGGGGTTCGTC 59.823 55.000 0.00 0.00 33.07 4.20
2153 2195 3.421394 AGGGAATCACTCATGACCCTA 57.579 47.619 15.87 0.00 45.53 3.53
2281 2323 2.049985 GACGGCCATCGGATCTCG 60.050 66.667 2.24 0.00 44.45 4.04
2290 2332 1.330655 ATCGGATCTCGGGTGTTGCT 61.331 55.000 0.00 0.00 39.77 3.91
2635 2677 5.755861 GGTTGCTCTGAACCTCTCATATAAC 59.244 44.000 0.00 0.00 42.03 1.89
2743 2785 5.123820 TGGTGTCGATTGGAAATTCTTGATC 59.876 40.000 0.00 0.00 0.00 2.92
2977 3019 5.911178 AGACCTCCCAGGATTCAATTATGTA 59.089 40.000 0.00 0.00 37.67 2.29
3117 3159 6.516718 TGACAGGTATAAGCTCTAATTCAGC 58.483 40.000 1.73 1.73 37.12 4.26
3131 3173 8.598075 GCTCTAATTCAGCATTTATGTTTTTGG 58.402 33.333 4.74 0.00 36.82 3.28
3135 3177 6.418057 TTCAGCATTTATGTTTTTGGTCCT 57.582 33.333 0.00 0.00 0.00 3.85
3238 3280 2.433436 GGTTTTTATCTCGCACCTGGT 58.567 47.619 0.00 0.00 0.00 4.00
3239 3281 2.817844 GGTTTTTATCTCGCACCTGGTT 59.182 45.455 0.00 0.00 0.00 3.67
3240 3282 3.254903 GGTTTTTATCTCGCACCTGGTTT 59.745 43.478 0.00 0.00 0.00 3.27
3241 3283 4.473199 GTTTTTATCTCGCACCTGGTTTC 58.527 43.478 0.00 0.00 0.00 2.78
3415 3667 0.522626 TCTGTGCGCAAATGGATGTG 59.477 50.000 14.00 0.00 0.00 3.21
3426 3678 3.380479 AATGGATGTGCATATTGCTGC 57.620 42.857 0.00 0.00 45.31 5.25
3570 3823 5.471456 CCATTAGCATAGTTGGGAGTTGATC 59.529 44.000 0.00 0.00 0.00 2.92
3744 3997 3.260269 TCCTGAAGGAGAAGTGAAGGA 57.740 47.619 0.00 0.00 39.78 3.36
3753 4007 2.834549 GAGAAGTGAAGGAGGATGACCA 59.165 50.000 0.00 0.00 38.94 4.02
3756 4010 3.425162 AGTGAAGGAGGATGACCAAAC 57.575 47.619 0.00 0.00 38.94 2.93
3757 4011 2.711009 AGTGAAGGAGGATGACCAAACA 59.289 45.455 0.00 0.00 38.94 2.83
3758 4012 3.138283 AGTGAAGGAGGATGACCAAACAA 59.862 43.478 0.00 0.00 38.94 2.83
3759 4013 3.888930 GTGAAGGAGGATGACCAAACAAA 59.111 43.478 0.00 0.00 38.94 2.83
3760 4014 3.888930 TGAAGGAGGATGACCAAACAAAC 59.111 43.478 0.00 0.00 38.94 2.93
3771 4025 4.202367 TGACCAAACAAACCAAACCAAACT 60.202 37.500 0.00 0.00 0.00 2.66
3852 4106 7.391554 AGAGTAGCATGTTCATGTGTATTGTTT 59.608 33.333 13.24 0.00 0.00 2.83
3974 4231 4.880537 CAGGACAGCGCTAGGCCG 62.881 72.222 21.23 14.38 45.17 6.13
4063 4320 2.042686 TTATGGCACTGGCATCTGAC 57.957 50.000 20.65 0.00 45.69 3.51
4190 4447 5.653769 ACTTTTGTAGCATGGCATTGTCTAT 59.346 36.000 0.00 0.00 0.00 1.98
4202 4459 8.957466 CATGGCATTGTCTATGATGATAATCTT 58.043 33.333 0.00 0.00 36.26 2.40
4713 4970 0.613777 GTGTCGTTCCCAGGATCCTT 59.386 55.000 13.00 0.00 0.00 3.36
4753 5010 5.649395 TCTTGAAGTGCTTGATATTTCTGGG 59.351 40.000 0.00 0.00 0.00 4.45
4837 5094 7.009179 TGACATATCCTCAAACAACTTCTCT 57.991 36.000 0.00 0.00 0.00 3.10
4869 5126 1.417890 AGCCACTGTCACTAAGCTTGT 59.582 47.619 9.86 2.27 0.00 3.16
5347 5604 2.125512 CCTCGAAAGGGCTCCACG 60.126 66.667 0.00 0.00 39.21 4.94
5821 6078 4.944317 GGAAGTCTGGCTAGCTTTTTGTAT 59.056 41.667 15.72 0.00 0.00 2.29
5847 6104 8.297426 TGGTAATACTATAATGCTCTCAGTTCG 58.703 37.037 0.00 0.00 0.00 3.95
5851 6108 5.352284 ACTATAATGCTCTCAGTTCGTTGG 58.648 41.667 0.00 0.00 0.00 3.77
5918 6178 9.213799 CCTCCTCATTCTATAAACTTATTGAGC 57.786 37.037 0.00 0.00 29.32 4.26
6255 6515 0.905357 CCCCCTCGTTCAAGTCTGAT 59.095 55.000 0.00 0.00 0.00 2.90
6264 6524 3.575630 GTTCAAGTCTGATGTCTACGCA 58.424 45.455 0.00 0.00 0.00 5.24
6516 6776 1.204146 GGCCTGGGATCAAGTCTGTA 58.796 55.000 0.00 0.00 0.00 2.74
6822 7082 2.231478 CCTGTCAAGTGTACTGATCCGT 59.769 50.000 0.00 0.00 0.00 4.69
6850 7110 7.858382 CGTCACTTCTGTAGTTTCATATAGAGG 59.142 40.741 0.00 0.00 33.85 3.69
6992 7252 6.006275 TCTTTTAGAAGGGGATGAATCTGG 57.994 41.667 0.00 0.00 33.56 3.86
7001 7262 2.091885 GGGATGAATCTGGGCCAACTTA 60.092 50.000 8.04 0.00 0.00 2.24
7007 7270 4.263905 TGAATCTGGGCCAACTTATTCACT 60.264 41.667 20.54 0.00 30.59 3.41
7008 7271 3.071874 TCTGGGCCAACTTATTCACTG 57.928 47.619 8.04 0.00 0.00 3.66
7009 7272 2.642311 TCTGGGCCAACTTATTCACTGA 59.358 45.455 8.04 0.00 0.00 3.41
7010 7273 3.073798 TCTGGGCCAACTTATTCACTGAA 59.926 43.478 8.04 0.00 0.00 3.02
7011 7274 4.019174 CTGGGCCAACTTATTCACTGAAT 58.981 43.478 8.04 9.26 36.20 2.57
7012 7275 4.415596 TGGGCCAACTTATTCACTGAATT 58.584 39.130 2.13 0.00 33.95 2.17
7019 7282 9.638239 GCCAACTTATTCACTGAATTTGAATTA 57.362 29.630 9.57 0.94 40.12 1.40
7027 7290 7.928307 TCACTGAATTTGAATTAGAGGGAAG 57.072 36.000 0.00 0.00 0.00 3.46
7030 7293 4.956075 TGAATTTGAATTAGAGGGAAGCCC 59.044 41.667 0.00 0.00 45.90 5.19
7047 7310 6.291377 GGAAGCCCTTTTCAAAAGAAGAAAT 58.709 36.000 11.73 0.00 35.17 2.17
7058 7321 1.160137 AGAAGAAATGCTCACGCCAC 58.840 50.000 0.00 0.00 34.43 5.01
7090 7353 2.551032 CAGTGAAAAACGTTACCCTCCC 59.449 50.000 0.00 0.00 0.00 4.30
7247 7510 3.836365 AACCCCCAACACATCTTTTTG 57.164 42.857 0.00 0.00 0.00 2.44
7315 7605 4.836825 TCCTATCACTTGGCTTTCTCTTG 58.163 43.478 0.00 0.00 0.00 3.02
7337 7629 3.403038 GCTTCTCTTGCAGGTTCTAACA 58.597 45.455 0.00 0.00 0.00 2.41
7547 7839 5.755813 CACACAGAGAGAAACCAAGAAATG 58.244 41.667 0.00 0.00 0.00 2.32
7586 7878 1.912043 ACTCCAAATACCAGCTCAGCT 59.088 47.619 0.00 0.00 40.77 4.24
7628 7920 7.656137 TCTCAGTTCTACACAAAACCAATCTAC 59.344 37.037 0.00 0.00 0.00 2.59
7705 7997 2.575532 TGCAACCTTCTTCACCTTCTG 58.424 47.619 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.313812 GGTCGCGGAGAAGAAGGAGA 61.314 60.000 6.13 0.00 0.00 3.71
1 2 1.139947 GGTCGCGGAGAAGAAGGAG 59.860 63.158 6.13 0.00 0.00 3.69
2 3 2.697761 CGGTCGCGGAGAAGAAGGA 61.698 63.158 6.13 0.00 0.00 3.36
3 4 2.202623 CGGTCGCGGAGAAGAAGG 60.203 66.667 6.13 0.00 0.00 3.46
4 5 1.514443 GACGGTCGCGGAGAAGAAG 60.514 63.158 6.13 0.00 0.00 2.85
5 6 2.564975 GACGGTCGCGGAGAAGAA 59.435 61.111 6.13 0.00 0.00 2.52
6 7 3.796443 CGACGGTCGCGGAGAAGA 61.796 66.667 18.36 0.00 31.14 2.87
7 8 3.996744 GACGACGGTCGCGGAGAAG 62.997 68.421 28.67 2.23 45.12 2.85
8 9 4.093952 GACGACGGTCGCGGAGAA 62.094 66.667 28.67 0.00 45.12 2.87
10 11 4.175489 ATGACGACGGTCGCGGAG 62.175 66.667 28.67 4.46 46.49 4.63
11 12 4.170062 GATGACGACGGTCGCGGA 62.170 66.667 28.67 13.98 46.49 5.54
12 13 4.175489 AGATGACGACGGTCGCGG 62.175 66.667 28.67 5.22 46.49 6.46
13 14 1.759293 TAGAGATGACGACGGTCGCG 61.759 60.000 28.67 9.08 46.49 5.87
14 15 0.587285 ATAGAGATGACGACGGTCGC 59.413 55.000 28.67 20.97 46.49 5.19
15 16 1.598132 ACATAGAGATGACGACGGTCG 59.402 52.381 27.33 27.33 46.49 4.79
16 17 2.612672 TGACATAGAGATGACGACGGTC 59.387 50.000 0.00 0.00 43.71 4.79
17 18 2.614520 CTGACATAGAGATGACGACGGT 59.385 50.000 0.00 0.00 36.48 4.83
18 19 2.872858 TCTGACATAGAGATGACGACGG 59.127 50.000 0.00 0.00 36.48 4.79
19 20 4.275662 GTTCTGACATAGAGATGACGACG 58.724 47.826 0.00 0.00 36.61 5.12
20 21 4.602995 GGTTCTGACATAGAGATGACGAC 58.397 47.826 0.00 0.00 36.61 4.34
21 22 3.312697 CGGTTCTGACATAGAGATGACGA 59.687 47.826 0.00 0.00 36.61 4.20
22 23 3.312697 TCGGTTCTGACATAGAGATGACG 59.687 47.826 0.00 0.00 36.61 4.35
23 24 4.902443 TCGGTTCTGACATAGAGATGAC 57.098 45.455 0.00 0.00 36.61 3.06
24 25 5.133221 TCATCGGTTCTGACATAGAGATGA 58.867 41.667 1.27 1.27 39.96 2.92
25 26 5.444663 TCATCGGTTCTGACATAGAGATG 57.555 43.478 0.00 0.00 37.14 2.90
26 27 5.596361 AGTTCATCGGTTCTGACATAGAGAT 59.404 40.000 0.00 0.00 36.61 2.75
27 28 4.950475 AGTTCATCGGTTCTGACATAGAGA 59.050 41.667 0.00 0.00 36.61 3.10
28 29 5.255710 AGTTCATCGGTTCTGACATAGAG 57.744 43.478 0.00 0.00 36.61 2.43
29 30 5.185056 TGAAGTTCATCGGTTCTGACATAGA 59.815 40.000 0.08 0.00 0.00 1.98
30 31 5.289675 GTGAAGTTCATCGGTTCTGACATAG 59.710 44.000 9.18 0.00 0.00 2.23
31 32 5.168569 GTGAAGTTCATCGGTTCTGACATA 58.831 41.667 9.18 0.00 0.00 2.29
32 33 3.997021 GTGAAGTTCATCGGTTCTGACAT 59.003 43.478 9.18 0.00 0.00 3.06
33 34 3.181470 TGTGAAGTTCATCGGTTCTGACA 60.181 43.478 9.18 0.00 0.00 3.58
34 35 3.390135 TGTGAAGTTCATCGGTTCTGAC 58.610 45.455 9.18 0.00 0.00 3.51
35 36 3.744238 TGTGAAGTTCATCGGTTCTGA 57.256 42.857 9.18 0.00 0.00 3.27
36 37 4.378770 CCAATGTGAAGTTCATCGGTTCTG 60.379 45.833 9.18 0.84 0.00 3.02
37 38 3.753272 CCAATGTGAAGTTCATCGGTTCT 59.247 43.478 9.18 0.00 0.00 3.01
38 39 3.670627 GCCAATGTGAAGTTCATCGGTTC 60.671 47.826 9.18 0.00 0.00 3.62
39 40 2.228822 GCCAATGTGAAGTTCATCGGTT 59.771 45.455 9.18 0.00 0.00 4.44
40 41 1.812571 GCCAATGTGAAGTTCATCGGT 59.187 47.619 9.18 0.00 0.00 4.69
41 42 1.133025 GGCCAATGTGAAGTTCATCGG 59.867 52.381 9.18 8.40 0.00 4.18
42 43 2.086869 AGGCCAATGTGAAGTTCATCG 58.913 47.619 9.18 0.00 0.00 3.84
43 44 3.084039 TGAGGCCAATGTGAAGTTCATC 58.916 45.455 9.18 3.86 0.00 2.92
44 45 3.159213 TGAGGCCAATGTGAAGTTCAT 57.841 42.857 9.18 0.00 0.00 2.57
45 46 2.655090 TGAGGCCAATGTGAAGTTCA 57.345 45.000 5.01 0.08 0.00 3.18
46 47 3.760684 AGATTGAGGCCAATGTGAAGTTC 59.239 43.478 5.01 0.00 42.66 3.01
47 48 3.760684 GAGATTGAGGCCAATGTGAAGTT 59.239 43.478 5.01 0.00 42.66 2.66
48 49 3.350833 GAGATTGAGGCCAATGTGAAGT 58.649 45.455 5.01 0.00 42.66 3.01
49 50 2.353889 CGAGATTGAGGCCAATGTGAAG 59.646 50.000 5.01 0.00 42.66 3.02
50 51 2.027285 TCGAGATTGAGGCCAATGTGAA 60.027 45.455 5.01 0.00 42.66 3.18
51 52 1.554617 TCGAGATTGAGGCCAATGTGA 59.445 47.619 5.01 0.00 42.66 3.58
52 53 2.028420 TCGAGATTGAGGCCAATGTG 57.972 50.000 5.01 0.00 42.66 3.21
53 54 2.437281 AGATCGAGATTGAGGCCAATGT 59.563 45.455 5.01 0.00 42.66 2.71
54 55 3.065655 GAGATCGAGATTGAGGCCAATG 58.934 50.000 5.01 0.00 42.66 2.82
55 56 2.038295 GGAGATCGAGATTGAGGCCAAT 59.962 50.000 5.01 0.00 45.10 3.16
56 57 1.414181 GGAGATCGAGATTGAGGCCAA 59.586 52.381 5.01 0.00 36.61 4.52
57 58 1.043816 GGAGATCGAGATTGAGGCCA 58.956 55.000 5.01 0.00 0.00 5.36
58 59 0.038709 CGGAGATCGAGATTGAGGCC 60.039 60.000 0.00 0.00 42.43 5.19
59 60 0.955178 TCGGAGATCGAGATTGAGGC 59.045 55.000 0.00 0.00 43.74 4.70
68 69 3.082548 ACTTGAACTTCTCGGAGATCGA 58.917 45.455 8.81 2.94 46.77 3.59
69 70 3.430931 GACTTGAACTTCTCGGAGATCG 58.569 50.000 8.81 5.96 40.90 3.69
70 71 3.429684 GGGACTTGAACTTCTCGGAGATC 60.430 52.174 8.81 4.39 33.89 2.75
71 72 2.498078 GGGACTTGAACTTCTCGGAGAT 59.502 50.000 8.81 0.00 33.89 2.75
72 73 1.893801 GGGACTTGAACTTCTCGGAGA 59.106 52.381 2.97 2.97 0.00 3.71
73 74 1.402984 CGGGACTTGAACTTCTCGGAG 60.403 57.143 0.00 0.00 31.77 4.63
74 75 0.601558 CGGGACTTGAACTTCTCGGA 59.398 55.000 0.00 0.00 31.77 4.55
75 76 0.601558 TCGGGACTTGAACTTCTCGG 59.398 55.000 0.00 0.00 36.33 4.63
76 77 2.656560 ATCGGGACTTGAACTTCTCG 57.343 50.000 0.00 0.00 37.05 4.04
77 78 3.437049 CCAAATCGGGACTTGAACTTCTC 59.563 47.826 0.00 0.00 0.00 2.87
78 79 3.181443 ACCAAATCGGGACTTGAACTTCT 60.181 43.478 0.00 0.00 40.22 2.85
79 80 3.146847 ACCAAATCGGGACTTGAACTTC 58.853 45.455 0.00 0.00 40.22 3.01
80 81 3.146847 GACCAAATCGGGACTTGAACTT 58.853 45.455 0.00 0.00 40.22 2.66
81 82 2.105821 TGACCAAATCGGGACTTGAACT 59.894 45.455 0.00 0.00 40.22 3.01
82 83 2.484264 CTGACCAAATCGGGACTTGAAC 59.516 50.000 0.00 0.00 40.22 3.18
83 84 2.778299 CTGACCAAATCGGGACTTGAA 58.222 47.619 0.00 0.00 40.22 2.69
84 85 1.610624 GCTGACCAAATCGGGACTTGA 60.611 52.381 0.00 0.00 40.22 3.02
85 86 0.804989 GCTGACCAAATCGGGACTTG 59.195 55.000 0.00 0.00 40.22 3.16
118 119 1.438710 CTGCGCCTTCGACAAAACG 60.439 57.895 4.18 0.00 38.10 3.60
132 133 3.190849 CAGACATCACCGCCTGCG 61.191 66.667 4.20 4.20 39.44 5.18
134 135 2.809861 AAGCCAGACATCACCGCCTG 62.810 60.000 0.00 0.00 0.00 4.85
135 136 1.264749 TAAGCCAGACATCACCGCCT 61.265 55.000 0.00 0.00 0.00 5.52
166 167 0.396811 AGGGCGTATGGTATTGGCTC 59.603 55.000 0.00 0.00 0.00 4.70
177 178 2.563179 GAGATCATGTACCAGGGCGTAT 59.437 50.000 0.00 0.00 0.00 3.06
186 187 2.248248 TCCCGGATGAGATCATGTACC 58.752 52.381 0.73 0.00 36.57 3.34
189 190 2.483714 CGTTTCCCGGATGAGATCATGT 60.484 50.000 0.73 0.00 36.57 3.21
191 192 2.039418 TCGTTTCCCGGATGAGATCAT 58.961 47.619 0.73 0.00 35.62 2.45
202 203 2.126189 GACTCCCGTCGTTTCCCG 60.126 66.667 0.00 0.00 38.13 5.14
214 215 2.126031 GTTCGTCAGCGGGACTCC 60.126 66.667 9.40 0.00 44.68 3.85
282 283 2.742372 CAACTTCCGCCACGAGGG 60.742 66.667 0.00 0.00 40.85 4.30
288 289 2.204461 TCGTCCTCAACTTCCGCCA 61.204 57.895 0.00 0.00 0.00 5.69
292 293 0.316204 TTCGGTCGTCCTCAACTTCC 59.684 55.000 0.00 0.00 0.00 3.46
351 352 0.179166 CATGAAATCCACAACCCGCG 60.179 55.000 0.00 0.00 0.00 6.46
357 358 2.026729 TCCGCCTACATGAAATCCACAA 60.027 45.455 0.00 0.00 0.00 3.33
360 361 3.554129 CGTATCCGCCTACATGAAATCCA 60.554 47.826 0.00 0.00 0.00 3.41
361 362 2.993899 CGTATCCGCCTACATGAAATCC 59.006 50.000 0.00 0.00 0.00 3.01
368 369 1.337071 CACAGTCGTATCCGCCTACAT 59.663 52.381 0.00 0.00 0.00 2.29
371 372 1.731433 GGCACAGTCGTATCCGCCTA 61.731 60.000 0.00 0.00 36.58 3.93
391 392 1.226547 CTGCCTCTCTTCGCTCGTC 60.227 63.158 0.00 0.00 0.00 4.20
396 397 3.077556 TCCCCTGCCTCTCTTCGC 61.078 66.667 0.00 0.00 0.00 4.70
407 408 2.074948 CAGATCCACCCCTCCCCTG 61.075 68.421 0.00 0.00 0.00 4.45
411 412 3.866582 CGGCAGATCCACCCCTCC 61.867 72.222 0.00 0.00 34.01 4.30
468 470 1.984990 CACAAAATTCGATTGCCCACG 59.015 47.619 0.00 0.00 0.00 4.94
469 471 2.986479 GTCACAAAATTCGATTGCCCAC 59.014 45.455 0.00 0.00 0.00 4.61
918 921 4.653888 AAACCGCCCCTTCCCGTG 62.654 66.667 0.00 0.00 0.00 4.94
919 922 4.653888 CAAACCGCCCCTTCCCGT 62.654 66.667 0.00 0.00 0.00 5.28
976 979 6.006449 GTGTCATATTTTGGCCTCCTCATAT 58.994 40.000 3.32 0.00 0.00 1.78
1015 1019 4.636435 CTTCGTGGGCGTTGGGGT 62.636 66.667 0.00 0.00 39.49 4.95
1025 1029 4.689345 CCTTACAAGAGGTTTACTTCGTGG 59.311 45.833 11.31 0.00 36.19 4.94
1112 1121 3.128589 GTGTCTTTTCTCTGTGTTTGGCA 59.871 43.478 0.00 0.00 0.00 4.92
1585 1614 4.626172 GGTAGAAGAGGACTAAAAAGTGCG 59.374 45.833 0.00 0.00 35.23 5.34
1644 1673 6.094881 CCAAAGAAAGAACACAAGGACAGTTA 59.905 38.462 0.00 0.00 0.00 2.24
1738 1767 2.225491 TGCTTTCACGGTGCACTAATTC 59.775 45.455 17.98 0.00 0.00 2.17
1764 1793 6.490040 ACACAGAAATGGCAACTTAACTACAT 59.510 34.615 0.00 0.00 37.61 2.29
1768 1797 4.278419 GGACACAGAAATGGCAACTTAACT 59.722 41.667 0.00 0.00 37.61 2.24
1774 1803 3.665745 AATGGACACAGAAATGGCAAC 57.334 42.857 0.00 0.00 0.00 4.17
1918 1957 2.166664 GAGCTTGGGACTGTACCTACTG 59.833 54.545 11.06 0.00 0.00 2.74
1966 2005 0.035317 TCAAGAACGCAGCACCTGAT 59.965 50.000 0.00 0.00 32.44 2.90
2002 2041 0.909610 TGCTCCTCCACGGGAAAGAT 60.910 55.000 0.00 0.00 34.66 2.40
2021 2060 0.837272 ACGAACCCCATCGGATTGAT 59.163 50.000 1.59 0.00 46.82 2.57
2038 2077 3.601360 GCAAAAACAAAAATCTGCCGACG 60.601 43.478 0.00 0.00 0.00 5.12
2041 2080 3.803778 AGAGCAAAAACAAAAATCTGCCG 59.196 39.130 0.00 0.00 0.00 5.69
2153 2195 0.031721 GAGTCTGTGACGAAACCGGT 59.968 55.000 0.00 0.00 37.67 5.28
2281 2323 0.460987 CGGAGAGATCAGCAACACCC 60.461 60.000 0.00 0.00 0.00 4.61
2290 2332 0.684535 TGGCAAACACGGAGAGATCA 59.315 50.000 0.00 0.00 0.00 2.92
2743 2785 4.982295 TCAACATGAGTAACAGTTGACTCG 59.018 41.667 0.00 7.04 44.22 4.18
2977 3019 4.641989 AGGCGCAAAACTTCAAGATCATAT 59.358 37.500 10.83 0.00 0.00 1.78
3117 3159 5.095490 GCGAGAGGACCAAAAACATAAATG 58.905 41.667 0.00 0.00 0.00 2.32
3131 3173 6.017934 TGCATAAAATGAAATAGCGAGAGGAC 60.018 38.462 0.00 0.00 0.00 3.85
3135 3177 6.671190 CCATGCATAAAATGAAATAGCGAGA 58.329 36.000 0.00 0.00 0.00 4.04
3399 3651 0.458889 ATGCACATCCATTTGCGCAC 60.459 50.000 11.12 0.00 41.96 5.34
3415 3667 1.605710 CCACAGTAGGCAGCAATATGC 59.394 52.381 0.00 0.00 45.46 3.14
3456 3708 6.545666 TCAAGTAGTTGCAAAGGAGAAAATCA 59.454 34.615 0.00 0.00 33.23 2.57
3570 3823 9.828039 ATATCATCTGTAGTGTTATGCCATATG 57.172 33.333 0.00 0.00 0.00 1.78
3744 3997 3.133901 GGTTTGGTTTGTTTGGTCATCCT 59.866 43.478 0.00 0.00 34.23 3.24
3753 4007 6.701145 AAAACAGTTTGGTTTGGTTTGTTT 57.299 29.167 0.00 0.00 35.67 2.83
3796 4050 6.683974 ATATGTACTGACAACAGAAATGCC 57.316 37.500 0.00 0.00 46.03 4.40
3852 4106 5.957771 ACCCAGCAGAAGATTACTAATGA 57.042 39.130 0.00 0.00 0.00 2.57
3974 4231 0.537371 AGGGCTAGCCAACAACACAC 60.537 55.000 34.09 14.00 37.98 3.82
4190 4447 7.164122 GGGCAGATACTGAAAGATTATCATCA 58.836 38.462 2.81 0.00 37.43 3.07
4297 4554 5.185828 GGACAAATTAAGGATCTGCAAGGTT 59.814 40.000 0.00 0.00 0.00 3.50
4713 4970 7.035004 CACTTCAAGACTCAAATTTTTGGACA 58.965 34.615 0.00 0.00 38.66 4.02
4753 5010 2.164422 GAGGCTGCCACTAAAATGGTTC 59.836 50.000 22.65 0.59 42.28 3.62
4882 5139 3.684788 ACTGGTTCGTTGATATGTCAAGC 59.315 43.478 4.98 0.66 44.58 4.01
5050 5307 1.255882 CGGATCCAGATGAGCTAGCT 58.744 55.000 19.45 19.45 0.00 3.32
5347 5604 1.294659 CTTGGCTCGGTGCTTCAGAC 61.295 60.000 1.77 0.00 42.39 3.51
5821 6078 8.297426 CGAACTGAGAGCATTATAGTATTACCA 58.703 37.037 0.00 0.00 0.00 3.25
5847 6104 4.320608 TCTGCAGAAATTGGAAACCAAC 57.679 40.909 15.67 0.00 46.95 3.77
5918 6178 7.219484 AGACACAAGAAGGTTGAATTAATGG 57.781 36.000 0.00 0.00 0.00 3.16
6012 6272 2.260869 GCCACGTGCCACATCAACT 61.261 57.895 10.91 0.00 0.00 3.16
6033 6293 3.687698 CACGGTCGAAATGGAGGTAATTT 59.312 43.478 0.00 0.00 0.00 1.82
6255 6515 1.265635 GCAACACCAAATGCGTAGACA 59.734 47.619 0.00 0.00 32.17 3.41
6264 6524 1.007038 CAGCAGCGCAACACCAAAT 60.007 52.632 11.47 0.00 0.00 2.32
6337 6597 2.273179 CCCAGTCGGTCAGGTCGAA 61.273 63.158 0.00 0.00 38.42 3.71
6516 6776 7.178274 AGCTAGATTGATGAAAGATCCTCGTAT 59.822 37.037 0.00 0.00 0.00 3.06
6822 7082 9.387257 TCTATATGAAACTACAGAAGTGACGTA 57.613 33.333 0.00 0.00 38.88 3.57
6873 7133 4.325972 TGATAAGCACTGCTGTCAAATCA 58.674 39.130 14.05 10.94 39.62 2.57
6949 7209 7.544804 AAAGAAATTTGCCTTATCTTCCACT 57.455 32.000 0.00 0.00 30.43 4.00
6958 7218 7.013834 TCCCCTTCTAAAAGAAATTTGCCTTA 58.986 34.615 0.00 0.00 33.19 2.69
6992 7252 6.024552 TCAAATTCAGTGAATAAGTTGGCC 57.975 37.500 18.56 0.00 31.46 5.36
7001 7262 8.884124 TTCCCTCTAATTCAAATTCAGTGAAT 57.116 30.769 12.75 12.75 45.47 2.57
7007 7270 4.956075 GGGCTTCCCTCTAATTCAAATTCA 59.044 41.667 0.00 0.00 41.34 2.57
7008 7271 5.521906 GGGCTTCCCTCTAATTCAAATTC 57.478 43.478 0.00 0.00 41.34 2.17
7019 7282 4.633651 TTCTTTTGAAAAGGGCTTCCCTCT 60.634 41.667 16.79 0.00 42.41 3.69
7027 7290 5.059161 AGCATTTCTTCTTTTGAAAAGGGC 58.941 37.500 16.79 9.57 38.07 5.19
7030 7293 6.860124 CGTGAGCATTTCTTCTTTTGAAAAG 58.140 36.000 11.30 11.30 38.07 2.27
7058 7321 9.155053 GTAACGTTTTTCACTGAATCTTACTTG 57.845 33.333 5.91 0.00 0.00 3.16
7090 7353 1.400846 GAAGCATGGACAGCTGTGATG 59.599 52.381 27.27 24.47 42.53 3.07
7133 7396 6.158598 TGCAATACTTGGAGAAGAATTTTGC 58.841 36.000 0.00 0.00 35.77 3.68
7247 7510 0.538287 AACCTGAAGGCTTGGCTGAC 60.538 55.000 3.46 0.00 39.32 3.51
7315 7605 2.744741 GTTAGAACCTGCAAGAGAAGCC 59.255 50.000 0.00 0.00 34.07 4.35
7337 7629 0.829333 TGTGCCATTTGTGGTGCTTT 59.171 45.000 0.00 0.00 0.00 3.51
7357 7649 5.855045 ACTGTTTCCTTGGTTAGTAGTCTG 58.145 41.667 0.00 0.00 0.00 3.51
7547 7839 6.403878 TGGAGTAGCAGAGTAACATTTTACC 58.596 40.000 0.00 0.00 38.79 2.85
7586 7878 8.759481 AGAACTGAGATGACAGATATGACTAA 57.241 34.615 0.00 0.00 40.63 2.24
7628 7920 4.760530 TCTGGTGATACTGGGAAAGATG 57.239 45.455 0.00 0.00 0.00 2.90
7682 7974 3.633986 AGAAGGTGAAGAAGGTTGCAAAG 59.366 43.478 0.00 0.00 0.00 2.77
7705 7997 2.111384 TGGAGGAGGTAGAGAACATGC 58.889 52.381 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.