Multiple sequence alignment - TraesCS2B01G272700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G272700 chr2B 100.000 4147 0 0 1 4147 374001426 373997280 0.000000e+00 7659.0
1 TraesCS2B01G272700 chr2B 84.071 113 7 11 3998 4105 773148205 773148099 9.490000e-17 99.0
2 TraesCS2B01G272700 chr2B 100.000 29 0 0 3431 3459 453265346 453265318 2.000000e-03 54.7
3 TraesCS2B01G272700 chr2D 95.788 1021 41 2 3016 4036 305913664 305912646 0.000000e+00 1646.0
4 TraesCS2B01G272700 chr2D 91.360 1169 95 5 1812 2976 305914830 305913664 0.000000e+00 1594.0
5 TraesCS2B01G272700 chr2D 92.763 608 15 10 688 1284 305915970 305915381 0.000000e+00 852.0
6 TraesCS2B01G272700 chr2D 97.590 332 7 1 313 644 305916300 305915970 6.020000e-158 568.0
7 TraesCS2B01G272700 chr2D 94.138 290 11 1 1546 1829 305915168 305914879 1.770000e-118 436.0
8 TraesCS2B01G272700 chr2D 90.823 316 16 3 1 316 305916634 305916332 1.070000e-110 411.0
9 TraesCS2B01G272700 chr2D 98.429 191 2 1 1278 1468 305915355 305915166 6.640000e-88 335.0
10 TraesCS2B01G272700 chr2D 97.183 71 2 0 4032 4102 381199455 381199385 2.020000e-23 121.0
11 TraesCS2B01G272700 chr2A 93.016 1031 54 12 1546 2567 384893453 384892432 0.000000e+00 1489.0
12 TraesCS2B01G272700 chr2A 93.308 792 27 9 688 1468 384894227 384893451 0.000000e+00 1146.0
13 TraesCS2B01G272700 chr2A 94.507 710 35 3 3018 3726 384891937 384891231 0.000000e+00 1092.0
14 TraesCS2B01G272700 chr2A 94.940 336 14 3 310 644 384894565 384894232 1.320000e-144 523.0
15 TraesCS2B01G272700 chr2A 89.078 412 44 1 2566 2976 384892350 384891939 1.030000e-140 510.0
16 TraesCS2B01G272700 chr2A 93.902 328 15 1 3709 4036 384891218 384890896 1.340000e-134 490.0
17 TraesCS2B01G272700 chr2A 91.398 93 6 1 1458 1548 49541884 49541976 4.350000e-25 126.0
18 TraesCS2B01G272700 chr2A 96.296 54 2 0 644 697 695156813 695156866 5.710000e-14 89.8
19 TraesCS2B01G272700 chr7B 94.565 92 5 0 1462 1553 122952584 122952493 4.320000e-30 143.0
20 TraesCS2B01G272700 chr7B 94.565 92 5 0 1462 1553 123030604 123030513 4.320000e-30 143.0
21 TraesCS2B01G272700 chr7B 97.143 70 0 2 4034 4101 458364546 458364477 2.620000e-22 117.0
22 TraesCS2B01G272700 chr1B 94.382 89 4 1 1466 1553 95298303 95298215 7.230000e-28 135.0
23 TraesCS2B01G272700 chr1B 89.130 46 3 2 3433 3477 605261225 605261269 5.790000e-04 56.5
24 TraesCS2B01G272700 chr1D 93.407 91 5 1 1458 1548 86902143 86902054 2.600000e-27 134.0
25 TraesCS2B01G272700 chr1D 94.253 87 4 1 1461 1547 351919287 351919202 9.350000e-27 132.0
26 TraesCS2B01G272700 chr6D 95.181 83 4 0 1466 1548 430139666 430139584 9.350000e-27 132.0
27 TraesCS2B01G272700 chr6D 91.765 85 1 4 4026 4104 259292208 259292292 3.390000e-21 113.0
28 TraesCS2B01G272700 chr3D 92.473 93 5 2 1457 1548 535978870 535978961 9.350000e-27 132.0
29 TraesCS2B01G272700 chr3D 100.000 49 0 0 644 692 250919226 250919178 1.590000e-14 91.6
30 TraesCS2B01G272700 chr3B 100.000 69 0 0 4033 4101 583376837 583376905 1.210000e-25 128.0
31 TraesCS2B01G272700 chr7A 94.048 84 4 1 1466 1549 578987833 578987751 4.350000e-25 126.0
32 TraesCS2B01G272700 chrUn 97.183 71 2 0 4032 4102 22340975 22340905 2.020000e-23 121.0
33 TraesCS2B01G272700 chr5B 98.529 68 1 0 4035 4102 414456797 414456864 2.020000e-23 121.0
34 TraesCS2B01G272700 chr5B 93.421 76 2 1 4034 4109 21588454 21588526 4.380000e-20 110.0
35 TraesCS2B01G272700 chr5B 100.000 28 0 0 3432 3459 257332419 257332446 7.000000e-03 52.8
36 TraesCS2B01G272700 chr5B 100.000 28 0 0 3432 3459 257528589 257528616 7.000000e-03 52.8
37 TraesCS2B01G272700 chr7D 91.667 84 5 2 4033 4115 556285957 556285875 9.420000e-22 115.0
38 TraesCS2B01G272700 chr7D 100.000 49 0 0 644 692 45835370 45835322 1.590000e-14 91.6
39 TraesCS2B01G272700 chr7D 97.059 34 1 0 3426 3459 208540314 208540347 1.610000e-04 58.4
40 TraesCS2B01G272700 chr3A 100.000 49 0 0 644 692 333325219 333325267 1.590000e-14 91.6
41 TraesCS2B01G272700 chr5A 96.226 53 2 0 644 696 453187875 453187927 2.050000e-13 87.9
42 TraesCS2B01G272700 chr4A 96.226 53 2 0 644 696 107003877 107003825 2.050000e-13 87.9
43 TraesCS2B01G272700 chr5D 94.643 56 2 1 643 698 329259358 329259304 7.390000e-13 86.1
44 TraesCS2B01G272700 chr5D 97.727 44 1 0 646 689 560011248 560011205 4.450000e-10 76.8
45 TraesCS2B01G272700 chr1A 90.476 63 4 1 634 696 6426284 6426224 9.560000e-12 82.4
46 TraesCS2B01G272700 chr6B 100.000 28 0 0 3432 3459 656174327 656174354 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G272700 chr2B 373997280 374001426 4146 True 7659.000000 7659 100.000000 1 4147 1 chr2B.!!$R1 4146
1 TraesCS2B01G272700 chr2D 305912646 305916634 3988 True 834.571429 1646 94.413000 1 4036 7 chr2D.!!$R2 4035
2 TraesCS2B01G272700 chr2A 384890896 384894565 3669 True 875.000000 1489 93.125167 310 4036 6 chr2A.!!$R1 3726


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.249398 GGTGGCATAGTCACGGAGTT 59.751 55.000 0.0 0.0 41.61 3.01 F
977 1024 0.252103 GTCTGTCTGGGTCTGGGGTA 60.252 60.000 0.0 0.0 0.00 3.69 F
1220 1267 1.008449 AGGTACTCCTAGCACCACCAT 59.992 52.381 0.0 0.0 43.12 3.55 F
1796 1889 1.279271 CTAGGTGACTGGGGAAGGTTG 59.721 57.143 0.0 0.0 43.88 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1775 1868 0.252742 ACCTTCCCCAGTCACCTAGG 60.253 60.000 7.41 7.41 0.0 3.02 R
2338 2504 0.807667 GGAGAATGTCAGCGATGCGT 60.808 55.000 0.00 0.00 0.0 5.24 R
2344 2510 1.081892 CAACAGGGAGAATGTCAGCG 58.918 55.000 0.00 0.00 0.0 5.18 R
3441 3693 2.156098 GCCACACTTATTTTGGGACGA 58.844 47.619 0.00 0.00 0.0 4.20 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.456287 GGTGAACTGGCAAGGAGGT 59.544 57.895 0.00 0.00 0.00 3.85
71 72 0.249398 GGTGGCATAGTCACGGAGTT 59.751 55.000 0.00 0.00 41.61 3.01
74 75 1.831106 TGGCATAGTCACGGAGTTCAT 59.169 47.619 0.00 0.00 41.61 2.57
99 100 3.522553 CGGGAGAGGTTAGTGTTCAATC 58.477 50.000 0.00 0.00 0.00 2.67
115 116 1.472480 CAATCCCTAACAACCGCCTTG 59.528 52.381 0.00 0.00 35.77 3.61
129 130 1.465794 GCCTTGTATAACCGCCCAAA 58.534 50.000 0.00 0.00 0.00 3.28
132 133 3.876341 CCTTGTATAACCGCCCAAACTA 58.124 45.455 0.00 0.00 0.00 2.24
156 157 2.668212 CCAACGAAAGGCTGCCGA 60.668 61.111 13.96 0.00 0.00 5.54
157 158 2.258013 CCAACGAAAGGCTGCCGAA 61.258 57.895 13.96 0.00 0.00 4.30
158 159 1.652012 CAACGAAAGGCTGCCGAAA 59.348 52.632 13.96 0.00 0.00 3.46
159 160 0.385974 CAACGAAAGGCTGCCGAAAG 60.386 55.000 13.96 9.22 0.00 2.62
171 172 3.221222 CGAAAGGCCGAGGAGGAT 58.779 61.111 0.00 0.00 45.00 3.24
222 223 3.896888 TGCATGAAAAATGGTGAGTCCTT 59.103 39.130 0.00 0.00 37.07 3.36
236 237 1.694696 AGTCCTTGGTGTGGAAGAGAC 59.305 52.381 0.00 0.00 35.10 3.36
282 283 0.393820 AGGGCCATGTTGCAAAACTG 59.606 50.000 6.18 0.00 0.00 3.16
307 308 1.830847 GGTTTGGGTTGCTTCGGGT 60.831 57.895 0.00 0.00 0.00 5.28
308 309 1.396607 GGTTTGGGTTGCTTCGGGTT 61.397 55.000 0.00 0.00 0.00 4.11
344 380 2.170187 GAGAGATCAGCAGGGTGAACAT 59.830 50.000 5.18 0.00 0.00 2.71
545 582 2.373335 TCTTGCAGCACCCCTAAAAA 57.627 45.000 0.00 0.00 0.00 1.94
644 681 3.555586 GGCAGGAAATGACAAAGCACATT 60.556 43.478 0.00 0.00 36.67 2.71
645 682 4.060205 GCAGGAAATGACAAAGCACATTT 58.940 39.130 0.00 0.00 45.37 2.32
646 683 5.229423 GCAGGAAATGACAAAGCACATTTA 58.771 37.500 0.00 0.00 43.62 1.40
648 685 6.449698 CAGGAAATGACAAAGCACATTTAGT 58.550 36.000 0.00 0.00 43.62 2.24
661 698 7.602517 AGCACATTTAGTGATCTAAACACTC 57.397 36.000 0.00 0.00 45.25 3.51
662 699 7.390027 AGCACATTTAGTGATCTAAACACTCT 58.610 34.615 0.00 0.00 45.25 3.24
663 700 7.880195 AGCACATTTAGTGATCTAAACACTCTT 59.120 33.333 0.00 0.00 45.25 2.85
682 719 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
684 721 9.939424 ACTCTTATATTAGTTTACAGAGGGAGT 57.061 33.333 0.00 0.00 32.21 3.85
719 760 1.541670 GGCGTGTCCCTAAACAACTCA 60.542 52.381 0.00 0.00 0.00 3.41
758 799 4.293648 CGTGCGGACAGGACACCA 62.294 66.667 8.11 0.00 41.69 4.17
967 1014 6.516718 CATATACCTACCTTTGTCTGTCTGG 58.483 44.000 0.00 0.00 0.00 3.86
968 1015 1.978580 ACCTACCTTTGTCTGTCTGGG 59.021 52.381 0.00 0.00 0.00 4.45
969 1016 1.978580 CCTACCTTTGTCTGTCTGGGT 59.021 52.381 0.00 0.00 0.00 4.51
970 1017 2.028020 CCTACCTTTGTCTGTCTGGGTC 60.028 54.545 0.00 0.00 0.00 4.46
971 1018 1.807814 ACCTTTGTCTGTCTGGGTCT 58.192 50.000 0.00 0.00 0.00 3.85
972 1019 1.417890 ACCTTTGTCTGTCTGGGTCTG 59.582 52.381 0.00 0.00 0.00 3.51
973 1020 1.271054 CCTTTGTCTGTCTGGGTCTGG 60.271 57.143 0.00 0.00 0.00 3.86
974 1021 0.764890 TTTGTCTGTCTGGGTCTGGG 59.235 55.000 0.00 0.00 0.00 4.45
975 1022 1.127567 TTGTCTGTCTGGGTCTGGGG 61.128 60.000 0.00 0.00 0.00 4.96
976 1023 1.536662 GTCTGTCTGGGTCTGGGGT 60.537 63.158 0.00 0.00 0.00 4.95
977 1024 0.252103 GTCTGTCTGGGTCTGGGGTA 60.252 60.000 0.00 0.00 0.00 3.69
1006 1053 2.771762 AGGGAGGGAGGATGCAGC 60.772 66.667 0.00 0.00 0.00 5.25
1089 1136 4.353437 GTCCTCGGCGTTGACGGT 62.353 66.667 6.85 0.00 40.23 4.83
1220 1267 1.008449 AGGTACTCCTAGCACCACCAT 59.992 52.381 0.00 0.00 43.12 3.55
1284 1375 5.129320 GCCTGGATTCCACCTGATAATTTTT 59.871 40.000 0.00 0.00 0.00 1.94
1468 1559 3.118592 GGCTCAGGTGCTTATCTGTTACT 60.119 47.826 0.00 0.00 33.13 2.24
1469 1560 4.116238 GCTCAGGTGCTTATCTGTTACTC 58.884 47.826 0.00 0.00 33.13 2.59
1470 1561 4.688021 CTCAGGTGCTTATCTGTTACTCC 58.312 47.826 0.00 0.00 33.13 3.85
1471 1562 3.451178 TCAGGTGCTTATCTGTTACTCCC 59.549 47.826 0.00 0.00 33.13 4.30
1472 1563 3.452627 CAGGTGCTTATCTGTTACTCCCT 59.547 47.826 0.00 0.00 0.00 4.20
1473 1564 4.080863 CAGGTGCTTATCTGTTACTCCCTT 60.081 45.833 0.00 0.00 0.00 3.95
1474 1565 4.162509 AGGTGCTTATCTGTTACTCCCTTC 59.837 45.833 0.00 0.00 0.00 3.46
1475 1566 4.081087 GGTGCTTATCTGTTACTCCCTTCA 60.081 45.833 0.00 0.00 0.00 3.02
1476 1567 5.396884 GGTGCTTATCTGTTACTCCCTTCAT 60.397 44.000 0.00 0.00 0.00 2.57
1477 1568 6.116126 GTGCTTATCTGTTACTCCCTTCATT 58.884 40.000 0.00 0.00 0.00 2.57
1478 1569 6.258947 GTGCTTATCTGTTACTCCCTTCATTC 59.741 42.308 0.00 0.00 0.00 2.67
1479 1570 5.760743 GCTTATCTGTTACTCCCTTCATTCC 59.239 44.000 0.00 0.00 0.00 3.01
1480 1571 6.632672 GCTTATCTGTTACTCCCTTCATTCCA 60.633 42.308 0.00 0.00 0.00 3.53
1481 1572 5.779241 ATCTGTTACTCCCTTCATTCCAA 57.221 39.130 0.00 0.00 0.00 3.53
1482 1573 5.576563 TCTGTTACTCCCTTCATTCCAAA 57.423 39.130 0.00 0.00 0.00 3.28
1483 1574 6.139679 TCTGTTACTCCCTTCATTCCAAAT 57.860 37.500 0.00 0.00 0.00 2.32
1484 1575 6.552008 TCTGTTACTCCCTTCATTCCAAATT 58.448 36.000 0.00 0.00 0.00 1.82
1485 1576 7.695055 TCTGTTACTCCCTTCATTCCAAATTA 58.305 34.615 0.00 0.00 0.00 1.40
1486 1577 7.610305 TCTGTTACTCCCTTCATTCCAAATTAC 59.390 37.037 0.00 0.00 0.00 1.89
1487 1578 7.466804 TGTTACTCCCTTCATTCCAAATTACT 58.533 34.615 0.00 0.00 0.00 2.24
1488 1579 7.610305 TGTTACTCCCTTCATTCCAAATTACTC 59.390 37.037 0.00 0.00 0.00 2.59
1489 1580 5.186198 ACTCCCTTCATTCCAAATTACTCG 58.814 41.667 0.00 0.00 0.00 4.18
1490 1581 5.174037 TCCCTTCATTCCAAATTACTCGT 57.826 39.130 0.00 0.00 0.00 4.18
1491 1582 5.183228 TCCCTTCATTCCAAATTACTCGTC 58.817 41.667 0.00 0.00 0.00 4.20
1492 1583 4.034048 CCCTTCATTCCAAATTACTCGTCG 59.966 45.833 0.00 0.00 0.00 5.12
1493 1584 4.630069 CCTTCATTCCAAATTACTCGTCGT 59.370 41.667 0.00 0.00 0.00 4.34
1494 1585 5.445939 CCTTCATTCCAAATTACTCGTCGTG 60.446 44.000 0.00 0.00 0.00 4.35
1495 1586 3.930229 TCATTCCAAATTACTCGTCGTGG 59.070 43.478 0.00 0.00 0.00 4.94
1496 1587 3.389925 TTCCAAATTACTCGTCGTGGT 57.610 42.857 0.00 0.00 0.00 4.16
1497 1588 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
1498 1589 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
1499 1590 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
1500 1591 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
1501 1592 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
1502 1593 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
1503 1594 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
1504 1595 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
1505 1596 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
1506 1597 3.986277 ACTCGTCGTGGTTTTAGTTCAT 58.014 40.909 0.00 0.00 0.00 2.57
1507 1598 3.739300 ACTCGTCGTGGTTTTAGTTCATG 59.261 43.478 0.00 0.00 0.00 3.07
1508 1599 3.979948 TCGTCGTGGTTTTAGTTCATGA 58.020 40.909 0.00 0.00 0.00 3.07
1509 1600 4.370049 TCGTCGTGGTTTTAGTTCATGAA 58.630 39.130 3.38 3.38 0.00 2.57
1510 1601 4.209703 TCGTCGTGGTTTTAGTTCATGAAC 59.790 41.667 27.69 27.69 41.45 3.18
1523 1614 4.451557 GTTCATGAACTAAAACCACGACG 58.548 43.478 27.66 0.00 38.25 5.12
1524 1615 3.979948 TCATGAACTAAAACCACGACGA 58.020 40.909 0.00 0.00 0.00 4.20
1525 1616 3.985279 TCATGAACTAAAACCACGACGAG 59.015 43.478 0.00 0.00 0.00 4.18
1526 1617 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
1527 1618 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
1528 1619 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
1529 1620 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
1530 1621 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
1531 1622 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
1532 1623 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
1533 1624 5.754890 ACTAAAACCACGACGAGTAATTTGT 59.245 36.000 0.00 2.95 0.00 2.83
1534 1625 6.922957 ACTAAAACCACGACGAGTAATTTGTA 59.077 34.615 0.00 0.00 0.00 2.41
1535 1626 6.601741 AAAACCACGACGAGTAATTTGTAA 57.398 33.333 0.00 0.00 0.00 2.41
1536 1627 5.580911 AACCACGACGAGTAATTTGTAAC 57.419 39.130 0.00 0.00 0.00 2.50
1537 1628 3.670055 ACCACGACGAGTAATTTGTAACG 59.330 43.478 0.00 0.00 0.00 3.18
1538 1629 3.059834 CCACGACGAGTAATTTGTAACGG 59.940 47.826 0.00 0.00 0.00 4.44
1539 1630 3.913763 CACGACGAGTAATTTGTAACGGA 59.086 43.478 0.00 0.00 0.00 4.69
1540 1631 4.029861 CACGACGAGTAATTTGTAACGGAG 59.970 45.833 0.00 0.00 0.00 4.63
1541 1632 3.545078 CGACGAGTAATTTGTAACGGAGG 59.455 47.826 0.00 0.00 0.00 4.30
1542 1633 3.853475 ACGAGTAATTTGTAACGGAGGG 58.147 45.455 0.00 0.00 0.00 4.30
1543 1634 3.511146 ACGAGTAATTTGTAACGGAGGGA 59.489 43.478 0.00 0.00 0.00 4.20
1544 1635 4.110482 CGAGTAATTTGTAACGGAGGGAG 58.890 47.826 0.00 0.00 0.00 4.30
1545 1636 4.381292 CGAGTAATTTGTAACGGAGGGAGT 60.381 45.833 0.00 0.00 0.00 3.85
1546 1637 5.163622 CGAGTAATTTGTAACGGAGGGAGTA 60.164 44.000 0.00 0.00 0.00 2.59
1547 1638 5.970592 AGTAATTTGTAACGGAGGGAGTAC 58.029 41.667 0.00 0.00 0.00 2.73
1588 1679 5.410924 GCAGGGGAAACTGAAATTAACATC 58.589 41.667 0.00 0.00 40.97 3.06
1591 1682 5.185828 AGGGGAAACTGAAATTAACATCTGC 59.814 40.000 0.00 0.00 0.00 4.26
1688 1781 3.650950 ATGGGCAAGCTCCACGGT 61.651 61.111 4.72 0.00 37.08 4.83
1796 1889 1.279271 CTAGGTGACTGGGGAAGGTTG 59.721 57.143 0.00 0.00 43.88 3.77
1822 1921 6.069331 ACACACACCTCTAACTTCTTCTCTA 58.931 40.000 0.00 0.00 0.00 2.43
1841 2005 9.757227 CTTCTCTATCTTTTAACTCCATGGTAG 57.243 37.037 12.58 10.43 0.00 3.18
1842 2006 7.727181 TCTCTATCTTTTAACTCCATGGTAGC 58.273 38.462 12.58 0.00 0.00 3.58
1844 2008 7.272978 TCTATCTTTTAACTCCATGGTAGCAC 58.727 38.462 12.58 0.00 0.00 4.40
2069 2233 9.627123 TGAACTGATAGGGTAAATATCCTTTTG 57.373 33.333 0.00 0.00 38.02 2.44
2076 2240 7.803279 AGGGTAAATATCCTTTTGAATCGAC 57.197 36.000 0.00 0.00 31.07 4.20
2079 2243 7.067737 GGGTAAATATCCTTTTGAATCGACCAA 59.932 37.037 0.00 0.00 0.00 3.67
2080 2244 8.630037 GGTAAATATCCTTTTGAATCGACCAAT 58.370 33.333 3.33 0.00 0.00 3.16
2087 2251 6.478344 TCCTTTTGAATCGACCAATTTGTTTG 59.522 34.615 3.33 0.00 34.93 2.93
2097 2261 8.568732 TCGACCAATTTGTTTGATTTTACTTC 57.431 30.769 0.00 0.00 37.53 3.01
2098 2262 8.191446 TCGACCAATTTGTTTGATTTTACTTCA 58.809 29.630 0.00 0.00 37.53 3.02
2113 2277 7.518731 TTTTACTTCATGTGAAAACAAGTGC 57.481 32.000 4.45 0.00 32.34 4.40
2136 2300 4.423625 AGTCTGTTTCAGTTACTTGGCT 57.576 40.909 0.00 0.00 32.61 4.75
2141 2305 6.482308 GTCTGTTTCAGTTACTTGGCTCTTAA 59.518 38.462 0.00 0.00 32.61 1.85
2173 2337 6.430616 CGGTTACCAATTGAAAAACCCTACTA 59.569 38.462 21.12 0.00 36.98 1.82
2180 2344 9.366216 CCAATTGAAAAACCCTACTAAAATAGC 57.634 33.333 7.12 0.00 0.00 2.97
2182 2346 6.746745 TGAAAAACCCTACTAAAATAGCCG 57.253 37.500 0.00 0.00 0.00 5.52
2184 2348 7.393216 TGAAAAACCCTACTAAAATAGCCGTA 58.607 34.615 0.00 0.00 0.00 4.02
2210 2374 6.426980 CTGACATTATGTTAGCTGAAGCAA 57.573 37.500 4.23 0.00 45.16 3.91
2217 2381 7.872163 TTATGTTAGCTGAAGCAAAATGTTG 57.128 32.000 4.90 0.00 45.16 3.33
2222 2386 5.772825 AGCTGAAGCAAAATGTTGACTAA 57.227 34.783 0.00 0.00 45.16 2.24
2225 2389 6.208204 AGCTGAAGCAAAATGTTGACTAAGAT 59.792 34.615 0.00 0.00 45.16 2.40
2236 2402 3.895232 TGACTAAGATTGGAGAGCACC 57.105 47.619 0.00 0.00 0.00 5.01
2237 2403 3.173151 TGACTAAGATTGGAGAGCACCA 58.827 45.455 0.00 0.00 38.24 4.17
2257 2423 7.877097 AGCACCAAATGAAAAACTGCAATAATA 59.123 29.630 0.00 0.00 0.00 0.98
2326 2492 3.609853 TGGCAGTTGGACATATGAAGAC 58.390 45.455 10.38 2.76 0.00 3.01
2344 2510 1.434696 CCAATCTTGGGCACGCATC 59.565 57.895 0.73 0.00 44.70 3.91
2369 2535 3.244422 TGACATTCTCCCTGTTGTGGTAC 60.244 47.826 0.00 0.00 0.00 3.34
2447 2613 3.641436 TGAACTAGCTTCCAGTGTCAAGA 59.359 43.478 0.00 0.00 0.00 3.02
2491 2657 1.923148 AGTGGGGAAGGTGAAATAGGG 59.077 52.381 0.00 0.00 0.00 3.53
2512 2678 3.376546 GGACTTCCTTCTGAATGACATGC 59.623 47.826 0.00 0.00 31.06 4.06
2542 2708 2.362077 CCTTGCCACAAACATATAGGCC 59.638 50.000 0.00 0.00 44.60 5.19
2625 2875 9.905713 AATGTCTTAATCCTCTGTATTTGCTTA 57.094 29.630 0.00 0.00 0.00 3.09
2628 2878 9.771534 GTCTTAATCCTCTGTATTTGCTTATCT 57.228 33.333 0.00 0.00 0.00 1.98
2675 2926 6.560253 TTCTGACCTTCTAATTTTGCAGAC 57.440 37.500 0.00 0.00 31.60 3.51
2690 2941 6.422776 TTTGCAGACGGAAAAGATCTATTC 57.577 37.500 0.00 0.00 28.38 1.75
2693 2944 4.443598 GCAGACGGAAAAGATCTATTCCCT 60.444 45.833 0.00 0.00 41.71 4.20
2727 2978 3.314080 CGGTAAAGTTCTTGAGGCAAACA 59.686 43.478 0.00 0.00 0.00 2.83
2744 2995 1.444933 ACAAGAGGTGGGACATTGGA 58.555 50.000 0.00 0.00 44.52 3.53
2758 3009 5.714806 GGGACATTGGAAAGGAAGTGATAAA 59.285 40.000 0.00 0.00 0.00 1.40
2774 3025 8.691661 AAGTGATAAATTGTGTTACCAAGACT 57.308 30.769 0.00 0.00 0.00 3.24
2813 3064 1.043116 TACATCCCGAGGTGAGCCAG 61.043 60.000 0.00 0.00 37.19 4.85
2823 3074 3.130516 CGAGGTGAGCCAGACTATAAACA 59.869 47.826 0.00 0.00 37.19 2.83
2827 3078 3.933332 GTGAGCCAGACTATAAACACACC 59.067 47.826 0.00 0.00 0.00 4.16
2828 3079 3.580895 TGAGCCAGACTATAAACACACCA 59.419 43.478 0.00 0.00 0.00 4.17
2831 3082 4.019321 AGCCAGACTATAAACACACCATGT 60.019 41.667 0.00 0.00 46.42 3.21
2832 3083 5.188948 AGCCAGACTATAAACACACCATGTA 59.811 40.000 0.00 0.00 42.31 2.29
2848 3099 6.183361 ACACCATGTATCTACCATAATGCCTT 60.183 38.462 0.00 0.00 0.00 4.35
2849 3100 6.716628 CACCATGTATCTACCATAATGCCTTT 59.283 38.462 0.00 0.00 0.00 3.11
2879 3130 1.958205 CTGCCGATTCCGCCATCTC 60.958 63.158 0.00 0.00 0.00 2.75
2881 3132 1.112916 TGCCGATTCCGCCATCTCTA 61.113 55.000 0.00 0.00 0.00 2.43
2947 3198 6.856895 AGTTGCATCAGGAATAAAGTTAAGC 58.143 36.000 0.00 0.00 0.00 3.09
2977 3228 9.719355 AGTTTAAAAAGTTGAAGAAATGGTGTT 57.281 25.926 0.00 0.00 0.00 3.32
2978 3229 9.753669 GTTTAAAAAGTTGAAGAAATGGTGTTG 57.246 29.630 0.00 0.00 0.00 3.33
2979 3230 9.712305 TTTAAAAAGTTGAAGAAATGGTGTTGA 57.288 25.926 0.00 0.00 0.00 3.18
2980 3231 7.832503 AAAAAGTTGAAGAAATGGTGTTGAG 57.167 32.000 0.00 0.00 0.00 3.02
2981 3232 4.574599 AGTTGAAGAAATGGTGTTGAGC 57.425 40.909 0.00 0.00 0.00 4.26
2982 3233 4.210331 AGTTGAAGAAATGGTGTTGAGCT 58.790 39.130 0.00 0.00 0.00 4.09
2983 3234 4.276926 AGTTGAAGAAATGGTGTTGAGCTC 59.723 41.667 6.82 6.82 0.00 4.09
2984 3235 3.819368 TGAAGAAATGGTGTTGAGCTCA 58.181 40.909 13.74 13.74 0.00 4.26
2985 3236 3.817084 TGAAGAAATGGTGTTGAGCTCAG 59.183 43.478 17.43 0.00 0.00 3.35
2986 3237 2.787994 AGAAATGGTGTTGAGCTCAGG 58.212 47.619 17.43 0.00 0.00 3.86
2987 3238 2.373169 AGAAATGGTGTTGAGCTCAGGA 59.627 45.455 17.43 4.50 0.00 3.86
2988 3239 2.957402 AATGGTGTTGAGCTCAGGAA 57.043 45.000 17.43 3.69 0.00 3.36
2989 3240 3.446442 AATGGTGTTGAGCTCAGGAAT 57.554 42.857 17.43 5.19 0.00 3.01
2990 3241 2.189594 TGGTGTTGAGCTCAGGAATG 57.810 50.000 17.43 0.00 0.00 2.67
2991 3242 1.699083 TGGTGTTGAGCTCAGGAATGA 59.301 47.619 17.43 0.00 0.00 2.57
2992 3243 2.106338 TGGTGTTGAGCTCAGGAATGAA 59.894 45.455 17.43 0.00 0.00 2.57
2993 3244 3.245016 TGGTGTTGAGCTCAGGAATGAAT 60.245 43.478 17.43 0.00 0.00 2.57
2994 3245 3.760684 GGTGTTGAGCTCAGGAATGAATT 59.239 43.478 17.43 0.00 0.00 2.17
2995 3246 4.219288 GGTGTTGAGCTCAGGAATGAATTT 59.781 41.667 17.43 0.00 0.00 1.82
2996 3247 5.397326 GTGTTGAGCTCAGGAATGAATTTC 58.603 41.667 17.43 0.00 0.00 2.17
2997 3248 5.182760 GTGTTGAGCTCAGGAATGAATTTCT 59.817 40.000 17.43 0.00 34.56 2.52
2998 3249 5.771666 TGTTGAGCTCAGGAATGAATTTCTT 59.228 36.000 17.43 0.00 34.56 2.52
2999 3250 6.072286 TGTTGAGCTCAGGAATGAATTTCTTC 60.072 38.462 17.43 0.09 34.56 2.87
3000 3251 5.563592 TGAGCTCAGGAATGAATTTCTTCA 58.436 37.500 13.74 0.00 45.15 3.02
3001 3252 5.646793 TGAGCTCAGGAATGAATTTCTTCAG 59.353 40.000 13.74 0.00 44.32 3.02
3002 3253 5.813383 AGCTCAGGAATGAATTTCTTCAGA 58.187 37.500 0.00 2.10 44.32 3.27
3003 3254 6.424883 AGCTCAGGAATGAATTTCTTCAGAT 58.575 36.000 0.00 0.00 44.32 2.90
3004 3255 6.543100 AGCTCAGGAATGAATTTCTTCAGATC 59.457 38.462 0.00 0.00 44.32 2.75
3005 3256 6.238703 GCTCAGGAATGAATTTCTTCAGATCC 60.239 42.308 11.91 11.91 44.32 3.36
3009 3260 7.261829 GGAATGAATTTCTTCAGATCCTGAG 57.738 40.000 12.31 0.00 44.32 3.35
3010 3261 7.052873 GGAATGAATTTCTTCAGATCCTGAGA 58.947 38.462 12.31 0.00 44.32 3.27
3011 3262 7.012232 GGAATGAATTTCTTCAGATCCTGAGAC 59.988 40.741 12.31 0.00 44.32 3.36
3012 3263 6.364568 TGAATTTCTTCAGATCCTGAGACA 57.635 37.500 0.00 0.00 41.75 3.41
3013 3264 6.772605 TGAATTTCTTCAGATCCTGAGACAA 58.227 36.000 0.00 0.00 41.75 3.18
3014 3265 7.226441 TGAATTTCTTCAGATCCTGAGACAAA 58.774 34.615 0.00 0.00 41.75 2.83
3015 3266 7.389884 TGAATTTCTTCAGATCCTGAGACAAAG 59.610 37.037 0.00 0.00 41.75 2.77
3016 3267 4.815533 TCTTCAGATCCTGAGACAAAGG 57.184 45.455 0.00 0.00 41.75 3.11
3023 3274 3.943671 TCCTGAGACAAAGGTCCAAAA 57.056 42.857 0.00 0.00 45.48 2.44
3304 3555 8.923270 TCAAATATGTGAAAAGGGAAAGAAAGT 58.077 29.630 0.00 0.00 0.00 2.66
3348 3599 5.907197 TTTTCGACACAAAAGTTGCAAAA 57.093 30.435 0.00 0.00 0.00 2.44
3383 3634 8.641498 AAATGTAGATGATTTTGTCCTCTGTT 57.359 30.769 0.00 0.00 34.26 3.16
3416 3668 5.717119 TCCGAATGACCTAAAGTTCAGTAC 58.283 41.667 0.00 0.00 0.00 2.73
3441 3693 2.567615 ACGTGCTGAAAGATACTCCCTT 59.432 45.455 0.00 0.00 34.07 3.95
3459 3711 3.190535 CCCTTCGTCCCAAAATAAGTGTG 59.809 47.826 0.00 0.00 0.00 3.82
3469 3721 4.278170 CCAAAATAAGTGTGGCTGACTTGA 59.722 41.667 10.74 0.00 35.30 3.02
3477 3729 3.433615 GTGTGGCTGACTTGATACAACTC 59.566 47.826 0.00 0.00 0.00 3.01
3495 3747 3.751518 ACTCTGGGTGGTTCACAAATAC 58.248 45.455 0.38 0.00 35.86 1.89
3527 3779 5.174395 AGCATAACATCACTTGACTCAGAC 58.826 41.667 0.00 0.00 0.00 3.51
3529 3781 6.153510 AGCATAACATCACTTGACTCAGACTA 59.846 38.462 0.00 0.00 0.00 2.59
3611 3863 9.355215 CATAACATTTATATCCCACGTAGAGTC 57.645 37.037 0.00 0.00 0.00 3.36
3706 3958 2.651382 AATACTTTACCCGGATGCCC 57.349 50.000 0.73 0.00 0.00 5.36
3782 4064 1.203052 CTTGCCTCAAATGCGGTCAAT 59.797 47.619 0.00 0.00 0.00 2.57
3857 4139 5.560724 ACATTGCTCAGGTACATGTTAACT 58.439 37.500 2.30 0.00 0.00 2.24
3926 4208 6.929049 TCATGACTAACAACTAGACAACTTGG 59.071 38.462 0.00 0.00 36.18 3.61
3944 4226 8.573035 ACAACTTGGTACATTTCGAAATACAAT 58.427 29.630 22.33 11.21 39.30 2.71
3950 4232 9.566530 TGGTACATTTCGAAATACAATCATTTG 57.433 29.630 22.33 10.62 38.86 2.32
3978 4260 4.265073 ACAATAGCTTCCTCCACAATCAC 58.735 43.478 0.00 0.00 0.00 3.06
4039 4321 8.919777 ATTATGGCCATTAGTAAAACTACTCC 57.080 34.615 26.37 0.00 28.93 3.85
4040 4322 5.106876 TGGCCATTAGTAAAACTACTCCC 57.893 43.478 0.00 0.00 28.93 4.30
4041 4323 4.786454 TGGCCATTAGTAAAACTACTCCCT 59.214 41.667 0.00 0.00 28.93 4.20
4042 4324 5.104652 TGGCCATTAGTAAAACTACTCCCTC 60.105 44.000 0.00 0.00 28.93 4.30
4043 4325 5.366460 GCCATTAGTAAAACTACTCCCTCC 58.634 45.833 0.00 0.00 28.93 4.30
4044 4326 5.598769 CCATTAGTAAAACTACTCCCTCCG 58.401 45.833 0.00 0.00 28.93 4.63
4045 4327 5.128335 CCATTAGTAAAACTACTCCCTCCGT 59.872 44.000 0.00 0.00 28.93 4.69
4046 4328 5.904362 TTAGTAAAACTACTCCCTCCGTC 57.096 43.478 0.00 0.00 28.93 4.79
4047 4329 3.095332 AGTAAAACTACTCCCTCCGTCC 58.905 50.000 0.00 0.00 0.00 4.79
4048 4330 1.273759 AAAACTACTCCCTCCGTCCC 58.726 55.000 0.00 0.00 0.00 4.46
4049 4331 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
4050 4332 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
4051 4333 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
4052 4334 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
4053 4335 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
4054 4336 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
4055 4337 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
4056 4338 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
4057 4339 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
4058 4340 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
4059 4341 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
4060 4342 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
4062 4344 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
4063 4345 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
4064 4346 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
4065 4347 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
4066 4348 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
4088 4370 7.915293 TTTTGACACTACACTACATTATGGG 57.085 36.000 0.00 0.00 0.00 4.00
4089 4371 6.860790 TTGACACTACACTACATTATGGGA 57.139 37.500 0.00 0.00 0.00 4.37
4090 4372 6.216801 TGACACTACACTACATTATGGGAC 57.783 41.667 0.00 0.00 0.00 4.46
4091 4373 5.163591 TGACACTACACTACATTATGGGACG 60.164 44.000 0.00 0.00 0.00 4.79
4092 4374 4.098960 ACACTACACTACATTATGGGACGG 59.901 45.833 0.00 0.00 0.00 4.79
4093 4375 4.340097 CACTACACTACATTATGGGACGGA 59.660 45.833 0.00 0.00 0.00 4.69
4094 4376 4.583489 ACTACACTACATTATGGGACGGAG 59.417 45.833 0.00 0.00 0.00 4.63
4095 4377 2.698797 ACACTACATTATGGGACGGAGG 59.301 50.000 0.00 0.00 0.00 4.30
4096 4378 2.037251 CACTACATTATGGGACGGAGGG 59.963 54.545 0.00 0.00 0.00 4.30
4097 4379 2.090943 ACTACATTATGGGACGGAGGGA 60.091 50.000 0.00 0.00 0.00 4.20
4098 4380 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
4099 4381 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
4100 4382 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
4101 4383 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
4102 4384 1.526315 TATGGGACGGAGGGAGTAGA 58.474 55.000 0.00 0.00 0.00 2.59
4103 4385 0.635009 ATGGGACGGAGGGAGTAGAA 59.365 55.000 0.00 0.00 0.00 2.10
4104 4386 0.635009 TGGGACGGAGGGAGTAGAAT 59.365 55.000 0.00 0.00 0.00 2.40
4105 4387 1.007963 TGGGACGGAGGGAGTAGAATT 59.992 52.381 0.00 0.00 0.00 2.17
4106 4388 2.117051 GGGACGGAGGGAGTAGAATTT 58.883 52.381 0.00 0.00 0.00 1.82
4107 4389 2.504585 GGGACGGAGGGAGTAGAATTTT 59.495 50.000 0.00 0.00 0.00 1.82
4108 4390 3.708121 GGGACGGAGGGAGTAGAATTTTA 59.292 47.826 0.00 0.00 0.00 1.52
4109 4391 4.162888 GGGACGGAGGGAGTAGAATTTTAA 59.837 45.833 0.00 0.00 0.00 1.52
4110 4392 5.163227 GGGACGGAGGGAGTAGAATTTTAAT 60.163 44.000 0.00 0.00 0.00 1.40
4111 4393 6.042437 GGGACGGAGGGAGTAGAATTTTAATA 59.958 42.308 0.00 0.00 0.00 0.98
4112 4394 7.419403 GGGACGGAGGGAGTAGAATTTTAATAA 60.419 40.741 0.00 0.00 0.00 1.40
4113 4395 7.989170 GGACGGAGGGAGTAGAATTTTAATAAA 59.011 37.037 0.00 0.00 0.00 1.40
4114 4396 9.387257 GACGGAGGGAGTAGAATTTTAATAAAA 57.613 33.333 0.25 0.25 34.41 1.52
4115 4397 9.392259 ACGGAGGGAGTAGAATTTTAATAAAAG 57.608 33.333 4.43 0.00 33.22 2.27
4116 4398 8.837389 CGGAGGGAGTAGAATTTTAATAAAAGG 58.163 37.037 4.43 0.00 33.22 3.11
4117 4399 9.132923 GGAGGGAGTAGAATTTTAATAAAAGGG 57.867 37.037 4.43 0.00 33.22 3.95
4118 4400 9.132923 GAGGGAGTAGAATTTTAATAAAAGGGG 57.867 37.037 4.43 0.00 33.22 4.79
4119 4401 8.065627 AGGGAGTAGAATTTTAATAAAAGGGGG 58.934 37.037 4.43 0.00 33.22 5.40
4120 4402 8.063153 GGGAGTAGAATTTTAATAAAAGGGGGA 58.937 37.037 4.43 0.00 33.22 4.81
4121 4403 9.483489 GGAGTAGAATTTTAATAAAAGGGGGAA 57.517 33.333 4.43 0.00 33.22 3.97
4141 4423 2.531522 AAAACTAAGGTACACCGCGT 57.468 45.000 4.92 0.00 42.08 6.01
4142 4424 2.531522 AAACTAAGGTACACCGCGTT 57.468 45.000 4.92 0.00 42.08 4.84
4143 4425 2.531522 AACTAAGGTACACCGCGTTT 57.468 45.000 4.92 0.00 42.08 3.60
4144 4426 3.658757 AACTAAGGTACACCGCGTTTA 57.341 42.857 4.92 0.00 42.08 2.01
4145 4427 3.874392 ACTAAGGTACACCGCGTTTAT 57.126 42.857 4.92 0.00 42.08 1.40
4146 4428 3.514645 ACTAAGGTACACCGCGTTTATG 58.485 45.455 4.92 0.00 42.08 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.368808 CAGTTCACCGGCGTTGCG 62.369 66.667 6.01 0.00 0.00 4.85
21 22 0.179018 ACACCTCCTTGCCAGTTCAC 60.179 55.000 0.00 0.00 0.00 3.18
38 39 1.521906 CCACCGACGAACAACCACA 60.522 57.895 0.00 0.00 0.00 4.17
71 72 1.342076 ACTAACCTCTCCCGCTCATGA 60.342 52.381 0.00 0.00 0.00 3.07
74 75 0.251653 ACACTAACCTCTCCCGCTCA 60.252 55.000 0.00 0.00 0.00 4.26
115 116 4.062991 CCATCTAGTTTGGGCGGTTATAC 58.937 47.826 6.59 0.00 0.00 1.47
129 130 1.065418 CCTTTCGTTGGCCCATCTAGT 60.065 52.381 0.00 0.00 0.00 2.57
132 133 1.678970 GCCTTTCGTTGGCCCATCT 60.679 57.895 0.00 0.00 44.32 2.90
141 142 1.515521 CCTTTCGGCAGCCTTTCGTT 61.516 55.000 10.54 0.00 0.00 3.85
142 143 1.966451 CCTTTCGGCAGCCTTTCGT 60.966 57.895 10.54 0.00 0.00 3.85
153 154 2.435693 ATCCTCCTCGGCCTTTCGG 61.436 63.158 0.00 0.00 0.00 4.30
154 155 1.227380 CATCCTCCTCGGCCTTTCG 60.227 63.158 0.00 0.00 0.00 3.46
155 156 1.147153 CCATCCTCCTCGGCCTTTC 59.853 63.158 0.00 0.00 0.00 2.62
156 157 1.306997 TCCATCCTCCTCGGCCTTT 60.307 57.895 0.00 0.00 0.00 3.11
157 158 1.764054 CTCCATCCTCCTCGGCCTT 60.764 63.158 0.00 0.00 0.00 4.35
158 159 2.029892 ATCTCCATCCTCCTCGGCCT 62.030 60.000 0.00 0.00 0.00 5.19
159 160 0.251832 TATCTCCATCCTCCTCGGCC 60.252 60.000 0.00 0.00 0.00 6.13
160 161 1.548269 CTTATCTCCATCCTCCTCGGC 59.452 57.143 0.00 0.00 0.00 5.54
161 162 2.823154 GACTTATCTCCATCCTCCTCGG 59.177 54.545 0.00 0.00 0.00 4.63
171 172 2.050144 GCCTCATGGGACTTATCTCCA 58.950 52.381 0.00 0.00 37.23 3.86
206 207 3.384467 CACACCAAGGACTCACCATTTTT 59.616 43.478 0.00 0.00 42.04 1.94
222 223 1.074090 TGGGGTCTCTTCCACACCA 60.074 57.895 0.00 0.00 45.61 4.17
236 237 1.856629 ATCCTTTGAGCAACATGGGG 58.143 50.000 0.00 0.00 0.00 4.96
275 276 2.028203 CCCAAACCATAGCCCAGTTTTG 60.028 50.000 0.00 0.00 31.54 2.44
282 283 0.614697 AGCAACCCAAACCATAGCCC 60.615 55.000 0.00 0.00 0.00 5.19
307 308 4.733371 TCCGCGCGCATCAGACAA 62.733 61.111 32.61 3.16 0.00 3.18
344 380 3.680937 CGCTAATTGAACGGAAACACCTA 59.319 43.478 0.00 0.00 36.31 3.08
545 582 3.447229 AGTTTGCTGCCAAAAGTTACAGT 59.553 39.130 0.00 0.00 42.19 3.55
656 693 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
658 695 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
666 703 9.939424 AATCTAGTACTCCCTCTGTAAACTAAT 57.061 33.333 0.00 0.00 0.00 1.73
668 705 9.844257 GTAATCTAGTACTCCCTCTGTAAACTA 57.156 37.037 0.00 0.00 0.00 2.24
669 706 8.559175 AGTAATCTAGTACTCCCTCTGTAAACT 58.441 37.037 0.00 0.00 27.56 2.66
670 707 8.750515 AGTAATCTAGTACTCCCTCTGTAAAC 57.249 38.462 0.00 0.00 27.56 2.01
672 709 9.444668 TCTAGTAATCTAGTACTCCCTCTGTAA 57.555 37.037 0.00 0.00 42.88 2.41
673 710 9.092338 CTCTAGTAATCTAGTACTCCCTCTGTA 57.908 40.741 0.00 0.00 42.88 2.74
674 711 7.016858 CCTCTAGTAATCTAGTACTCCCTCTGT 59.983 44.444 0.00 0.00 42.88 3.41
675 712 7.391620 CCTCTAGTAATCTAGTACTCCCTCTG 58.608 46.154 0.00 0.00 42.88 3.35
676 713 6.013119 GCCTCTAGTAATCTAGTACTCCCTCT 60.013 46.154 0.00 0.00 42.88 3.69
677 714 6.175471 GCCTCTAGTAATCTAGTACTCCCTC 58.825 48.000 0.00 0.00 42.88 4.30
678 715 5.280113 CGCCTCTAGTAATCTAGTACTCCCT 60.280 48.000 0.00 0.00 42.88 4.20
679 716 4.937015 CGCCTCTAGTAATCTAGTACTCCC 59.063 50.000 0.00 0.00 42.88 4.30
680 717 5.409214 CACGCCTCTAGTAATCTAGTACTCC 59.591 48.000 0.00 0.00 42.88 3.85
681 718 5.990996 ACACGCCTCTAGTAATCTAGTACTC 59.009 44.000 0.00 0.00 42.88 2.59
682 719 5.927819 ACACGCCTCTAGTAATCTAGTACT 58.072 41.667 0.00 0.00 42.88 2.73
683 720 5.179182 GGACACGCCTCTAGTAATCTAGTAC 59.821 48.000 2.84 0.00 42.88 2.73
684 721 5.303971 GGACACGCCTCTAGTAATCTAGTA 58.696 45.833 2.84 0.00 42.88 1.82
685 722 4.136051 GGACACGCCTCTAGTAATCTAGT 58.864 47.826 2.84 0.00 42.88 2.57
686 723 3.502979 GGGACACGCCTCTAGTAATCTAG 59.497 52.174 0.00 0.00 43.48 2.43
758 799 1.293179 GAAATTGCAAGGGCGGCTT 59.707 52.632 9.56 0.00 45.35 4.35
967 1014 2.675371 GGTTGGCTACCCCAGACC 59.325 66.667 6.88 0.00 46.39 3.85
975 1022 0.253327 CTCCCTCCTTGGTTGGCTAC 59.747 60.000 0.00 0.00 0.00 3.58
976 1023 0.914417 CCTCCCTCCTTGGTTGGCTA 60.914 60.000 0.00 0.00 0.00 3.93
977 1024 2.234296 CCTCCCTCCTTGGTTGGCT 61.234 63.158 0.00 0.00 0.00 4.75
1006 1053 4.401519 CCATATGTCCCTAGTGGTATACCG 59.598 50.000 17.13 2.59 39.43 4.02
1062 1109 4.717629 CCGAGGACGACGCTGCAA 62.718 66.667 0.00 0.00 42.66 4.08
1220 1267 2.534011 TTGGATGCCAGGTGGGGA 60.534 61.111 0.00 0.00 43.39 4.81
1284 1375 5.598005 TCCTCTGAAGAATTTCAAGCCAAAA 59.402 36.000 0.00 0.00 42.48 2.44
1468 1559 5.174037 ACGAGTAATTTGGAATGAAGGGA 57.826 39.130 0.00 0.00 0.00 4.20
1469 1560 4.034048 CGACGAGTAATTTGGAATGAAGGG 59.966 45.833 0.00 0.00 0.00 3.95
1470 1561 4.630069 ACGACGAGTAATTTGGAATGAAGG 59.370 41.667 0.00 0.00 0.00 3.46
1471 1562 5.445939 CCACGACGAGTAATTTGGAATGAAG 60.446 44.000 0.00 0.00 0.00 3.02
1472 1563 4.390603 CCACGACGAGTAATTTGGAATGAA 59.609 41.667 0.00 0.00 0.00 2.57
1473 1564 3.930229 CCACGACGAGTAATTTGGAATGA 59.070 43.478 0.00 0.00 0.00 2.57
1474 1565 3.682858 ACCACGACGAGTAATTTGGAATG 59.317 43.478 0.00 0.00 0.00 2.67
1475 1566 3.934068 ACCACGACGAGTAATTTGGAAT 58.066 40.909 0.00 0.00 0.00 3.01
1476 1567 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
1477 1568 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
1478 1569 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
1479 1570 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
1480 1571 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
1481 1572 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
1482 1573 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
1483 1574 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
1484 1575 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
1485 1576 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
1486 1577 3.985279 TCATGAACTAAAACCACGACGAG 59.015 43.478 0.00 0.00 0.00 4.18
1487 1578 3.979948 TCATGAACTAAAACCACGACGA 58.020 40.909 0.00 0.00 0.00 4.20
1488 1579 4.451557 GTTCATGAACTAAAACCACGACG 58.548 43.478 27.66 0.00 38.25 5.12
1501 1592 4.209703 TCGTCGTGGTTTTAGTTCATGAAC 59.790 41.667 27.69 27.69 41.45 3.18
1502 1593 4.370049 TCGTCGTGGTTTTAGTTCATGAA 58.630 39.130 3.38 3.38 0.00 2.57
1503 1594 3.979948 TCGTCGTGGTTTTAGTTCATGA 58.020 40.909 0.00 0.00 0.00 3.07
1504 1595 3.739300 ACTCGTCGTGGTTTTAGTTCATG 59.261 43.478 0.00 0.00 0.00 3.07
1505 1596 3.986277 ACTCGTCGTGGTTTTAGTTCAT 58.014 40.909 0.00 0.00 0.00 2.57
1506 1597 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
1507 1598 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
1508 1599 6.258507 ACAAATTACTCGTCGTGGTTTTAGTT 59.741 34.615 0.00 0.00 0.00 2.24
1509 1600 5.754890 ACAAATTACTCGTCGTGGTTTTAGT 59.245 36.000 0.00 0.00 0.00 2.24
1510 1601 6.219302 ACAAATTACTCGTCGTGGTTTTAG 57.781 37.500 0.00 0.00 0.00 1.85
1511 1602 7.563270 GTTACAAATTACTCGTCGTGGTTTTA 58.437 34.615 0.00 0.00 0.00 1.52
1512 1603 6.421405 GTTACAAATTACTCGTCGTGGTTTT 58.579 36.000 0.00 0.00 0.00 2.43
1513 1604 5.332506 CGTTACAAATTACTCGTCGTGGTTT 60.333 40.000 0.00 0.00 0.00 3.27
1514 1605 4.148696 CGTTACAAATTACTCGTCGTGGTT 59.851 41.667 0.00 0.00 0.00 3.67
1515 1606 3.670055 CGTTACAAATTACTCGTCGTGGT 59.330 43.478 0.00 0.00 0.00 4.16
1516 1607 3.059834 CCGTTACAAATTACTCGTCGTGG 59.940 47.826 0.00 0.00 0.00 4.94
1517 1608 3.913763 TCCGTTACAAATTACTCGTCGTG 59.086 43.478 0.00 0.00 0.00 4.35
1518 1609 4.159377 TCCGTTACAAATTACTCGTCGT 57.841 40.909 0.00 0.00 0.00 4.34
1519 1610 3.545078 CCTCCGTTACAAATTACTCGTCG 59.455 47.826 0.00 0.00 0.00 5.12
1520 1611 3.861689 CCCTCCGTTACAAATTACTCGTC 59.138 47.826 0.00 0.00 0.00 4.20
1521 1612 3.511146 TCCCTCCGTTACAAATTACTCGT 59.489 43.478 0.00 0.00 0.00 4.18
1522 1613 4.110482 CTCCCTCCGTTACAAATTACTCG 58.890 47.826 0.00 0.00 0.00 4.18
1523 1614 5.082251 ACTCCCTCCGTTACAAATTACTC 57.918 43.478 0.00 0.00 0.00 2.59
1524 1615 5.105187 GGTACTCCCTCCGTTACAAATTACT 60.105 44.000 0.00 0.00 0.00 2.24
1525 1616 5.105187 AGGTACTCCCTCCGTTACAAATTAC 60.105 44.000 0.00 0.00 40.71 1.89
1526 1617 5.025453 AGGTACTCCCTCCGTTACAAATTA 58.975 41.667 0.00 0.00 40.71 1.40
1527 1618 3.842436 AGGTACTCCCTCCGTTACAAATT 59.158 43.478 0.00 0.00 40.71 1.82
1528 1619 3.197116 CAGGTACTCCCTCCGTTACAAAT 59.803 47.826 0.00 0.00 43.86 2.32
1529 1620 2.564062 CAGGTACTCCCTCCGTTACAAA 59.436 50.000 0.00 0.00 43.86 2.83
1530 1621 2.173519 CAGGTACTCCCTCCGTTACAA 58.826 52.381 0.00 0.00 43.86 2.41
1531 1622 1.843368 CAGGTACTCCCTCCGTTACA 58.157 55.000 0.00 0.00 43.86 2.41
1532 1623 0.459078 GCAGGTACTCCCTCCGTTAC 59.541 60.000 0.00 0.00 43.86 2.50
1533 1624 0.333993 AGCAGGTACTCCCTCCGTTA 59.666 55.000 0.00 0.00 43.86 3.18
1534 1625 1.078710 AGCAGGTACTCCCTCCGTT 59.921 57.895 0.00 0.00 43.86 4.44
1535 1626 1.682684 CAGCAGGTACTCCCTCCGT 60.683 63.158 0.00 0.00 43.86 4.69
1536 1627 3.082579 GCAGCAGGTACTCCCTCCG 62.083 68.421 0.00 0.00 43.86 4.63
1537 1628 2.736826 GGCAGCAGGTACTCCCTCC 61.737 68.421 0.00 0.00 43.86 4.30
1538 1629 1.553690 TTGGCAGCAGGTACTCCCTC 61.554 60.000 0.00 0.00 43.86 4.30
1540 1631 1.078143 CTTGGCAGCAGGTACTCCC 60.078 63.158 0.00 0.00 34.60 4.30
1541 1632 0.324943 TTCTTGGCAGCAGGTACTCC 59.675 55.000 0.00 0.00 34.60 3.85
1542 1633 2.185004 TTTCTTGGCAGCAGGTACTC 57.815 50.000 0.00 0.00 34.60 2.59
1543 1634 2.619074 GGATTTCTTGGCAGCAGGTACT 60.619 50.000 0.00 0.00 43.88 2.73
1544 1635 1.745653 GGATTTCTTGGCAGCAGGTAC 59.254 52.381 0.00 0.00 0.00 3.34
1545 1636 1.678728 CGGATTTCTTGGCAGCAGGTA 60.679 52.381 0.00 0.00 0.00 3.08
1546 1637 0.962356 CGGATTTCTTGGCAGCAGGT 60.962 55.000 0.00 0.00 0.00 4.00
1547 1638 1.805254 CGGATTTCTTGGCAGCAGG 59.195 57.895 0.00 0.00 0.00 4.85
1574 1665 5.183904 GGAACAGGCAGATGTTAATTTCAGT 59.816 40.000 1.68 0.00 43.32 3.41
1775 1868 0.252742 ACCTTCCCCAGTCACCTAGG 60.253 60.000 7.41 7.41 0.00 3.02
1796 1889 4.039366 AGAAGAAGTTAGAGGTGTGTGTCC 59.961 45.833 0.00 0.00 0.00 4.02
1822 1921 6.067217 AGTGCTACCATGGAGTTAAAAGAT 57.933 37.500 21.47 0.00 0.00 2.40
1841 2005 5.539048 TCCTCCGCTTAAAAGATATAGTGC 58.461 41.667 0.00 0.00 0.00 4.40
1842 2006 7.711339 AGTTTCCTCCGCTTAAAAGATATAGTG 59.289 37.037 0.00 0.00 0.00 2.74
1844 2008 7.171678 CCAGTTTCCTCCGCTTAAAAGATATAG 59.828 40.741 0.00 0.00 0.00 1.31
2069 2233 9.191995 AGTAAAATCAAACAAATTGGTCGATTC 57.808 29.630 0.00 0.00 39.62 2.52
2076 2240 9.866936 CACATGAAGTAAAATCAAACAAATTGG 57.133 29.630 0.00 0.00 39.62 3.16
2087 2251 8.268738 GCACTTGTTTTCACATGAAGTAAAATC 58.731 33.333 0.00 0.00 35.21 2.17
2097 2261 4.501559 CAGACTTGCACTTGTTTTCACATG 59.498 41.667 0.00 0.00 34.81 3.21
2098 2262 4.158394 ACAGACTTGCACTTGTTTTCACAT 59.842 37.500 0.00 0.00 31.06 3.21
2113 2277 4.576463 AGCCAAGTAACTGAAACAGACTTG 59.424 41.667 18.12 18.12 41.65 3.16
2136 2300 7.218614 TCAATTGGTAACCGAACTCTTTAAGA 58.781 34.615 5.42 0.00 0.00 2.10
2141 2305 6.702716 TTTTCAATTGGTAACCGAACTCTT 57.297 33.333 5.42 0.00 0.00 2.85
2179 2343 4.377431 GCTAACATAATGTCAGCATACGGC 60.377 45.833 0.00 0.00 41.27 5.68
2180 2344 4.991056 AGCTAACATAATGTCAGCATACGG 59.009 41.667 6.40 0.00 44.04 4.02
2182 2346 7.482654 TTCAGCTAACATAATGTCAGCATAC 57.517 36.000 6.40 0.00 44.04 2.39
2184 2348 5.008415 GCTTCAGCTAACATAATGTCAGCAT 59.992 40.000 6.40 0.00 44.04 3.79
2199 2363 6.710295 TCTTAGTCAACATTTTGCTTCAGCTA 59.290 34.615 0.00 0.00 42.66 3.32
2210 2374 6.150140 GTGCTCTCCAATCTTAGTCAACATTT 59.850 38.462 0.00 0.00 0.00 2.32
2217 2381 3.895232 TGGTGCTCTCCAATCTTAGTC 57.105 47.619 0.00 0.00 34.24 2.59
2222 2386 3.726557 TCATTTGGTGCTCTCCAATCT 57.273 42.857 4.49 0.00 45.30 2.40
2225 2389 4.405358 AGTTTTTCATTTGGTGCTCTCCAA 59.595 37.500 0.00 0.00 44.48 3.53
2257 2423 5.149973 TGTTGCAATTTTCATGGTAGCAT 57.850 34.783 0.59 0.40 0.00 3.79
2307 2473 3.609853 TGGTCTTCATATGTCCAACTGC 58.390 45.455 1.90 0.00 0.00 4.40
2338 2504 0.807667 GGAGAATGTCAGCGATGCGT 60.808 55.000 0.00 0.00 0.00 5.24
2344 2510 1.081892 CAACAGGGAGAATGTCAGCG 58.918 55.000 0.00 0.00 0.00 5.18
2491 2657 4.005650 TGCATGTCATTCAGAAGGAAGTC 58.994 43.478 0.00 0.00 39.30 3.01
2559 2725 7.222031 GGACACGGAATTTATTTTCTATTTGCC 59.778 37.037 0.00 0.00 0.00 4.52
2596 2845 8.677300 GCAAATACAGAGGATTAAGACATTCAA 58.323 33.333 0.00 0.00 0.00 2.69
2598 2847 8.443953 AGCAAATACAGAGGATTAAGACATTC 57.556 34.615 0.00 0.00 0.00 2.67
2599 2848 8.814038 AAGCAAATACAGAGGATTAAGACATT 57.186 30.769 0.00 0.00 0.00 2.71
2601 2850 9.547753 GATAAGCAAATACAGAGGATTAAGACA 57.452 33.333 0.00 0.00 0.00 3.41
2602 2851 9.771534 AGATAAGCAAATACAGAGGATTAAGAC 57.228 33.333 0.00 0.00 0.00 3.01
2606 2856 7.378966 CGGAGATAAGCAAATACAGAGGATTA 58.621 38.462 0.00 0.00 0.00 1.75
2610 2860 4.039245 TCCGGAGATAAGCAAATACAGAGG 59.961 45.833 0.00 0.00 0.00 3.69
2625 2875 5.070001 TGTTGAAATCTTTGTTCCGGAGAT 58.930 37.500 3.34 0.00 0.00 2.75
2626 2876 4.456535 TGTTGAAATCTTTGTTCCGGAGA 58.543 39.130 3.34 0.00 0.00 3.71
2628 2878 4.582656 ACATGTTGAAATCTTTGTTCCGGA 59.417 37.500 0.00 0.00 0.00 5.14
2675 2926 5.675538 ACAAGAGGGAATAGATCTTTTCCG 58.324 41.667 28.17 20.00 40.26 4.30
2690 2941 3.899052 TTACCGACCATAACAAGAGGG 57.101 47.619 0.00 0.00 0.00 4.30
2693 2944 6.105397 AGAACTTTACCGACCATAACAAGA 57.895 37.500 0.00 0.00 0.00 3.02
2727 2978 2.225117 CCTTTCCAATGTCCCACCTCTT 60.225 50.000 0.00 0.00 0.00 2.85
2744 2995 8.472007 TGGTAACACAATTTATCACTTCCTTT 57.528 30.769 0.00 0.00 46.17 3.11
2774 3025 4.855018 TGTATTGGATATGCCCCTGGATAA 59.145 41.667 0.00 0.00 34.97 1.75
2813 3064 8.418662 TGGTAGATACATGGTGTGTTTATAGTC 58.581 37.037 0.00 0.00 42.29 2.59
2823 3074 5.310594 AGGCATTATGGTAGATACATGGTGT 59.689 40.000 0.00 0.00 0.00 4.16
2827 3078 8.084073 CCAAAAAGGCATTATGGTAGATACATG 58.916 37.037 7.49 0.00 0.00 3.21
2828 3079 8.004215 TCCAAAAAGGCATTATGGTAGATACAT 58.996 33.333 13.54 0.00 37.29 2.29
2831 3082 8.830915 TTTCCAAAAAGGCATTATGGTAGATA 57.169 30.769 13.54 0.00 37.29 1.98
2832 3083 7.732222 TTTCCAAAAAGGCATTATGGTAGAT 57.268 32.000 13.54 0.00 37.29 1.98
2848 3099 5.449862 CGGAATCGGCAGAATATTTCCAAAA 60.450 40.000 14.62 0.00 33.53 2.44
2849 3100 4.036262 CGGAATCGGCAGAATATTTCCAAA 59.964 41.667 14.62 0.00 33.53 3.28
2901 3152 7.530426 ACTAAAATCTTCTCTGGCATGTTTT 57.470 32.000 0.00 0.00 0.00 2.43
2905 3156 5.106038 TGCAACTAAAATCTTCTCTGGCATG 60.106 40.000 0.00 0.00 0.00 4.06
2908 3159 5.124457 TGATGCAACTAAAATCTTCTCTGGC 59.876 40.000 0.00 0.00 0.00 4.85
2909 3160 6.183360 CCTGATGCAACTAAAATCTTCTCTGG 60.183 42.308 0.00 0.00 0.00 3.86
2921 3172 8.458843 GCTTAACTTTATTCCTGATGCAACTAA 58.541 33.333 0.00 0.00 0.00 2.24
2956 3207 6.313658 GCTCAACACCATTTCTTCAACTTTTT 59.686 34.615 0.00 0.00 0.00 1.94
2976 3227 6.005823 TGAAGAAATTCATTCCTGAGCTCAA 58.994 36.000 18.85 3.02 38.94 3.02
2977 3228 5.563592 TGAAGAAATTCATTCCTGAGCTCA 58.436 37.500 17.19 17.19 38.94 4.26
2978 3229 5.879223 TCTGAAGAAATTCATTCCTGAGCTC 59.121 40.000 6.82 6.82 38.94 4.09
2979 3230 5.813383 TCTGAAGAAATTCATTCCTGAGCT 58.187 37.500 0.00 0.00 38.94 4.09
2980 3231 6.238703 GGATCTGAAGAAATTCATTCCTGAGC 60.239 42.308 0.00 1.89 38.94 4.26
2981 3232 7.055378 AGGATCTGAAGAAATTCATTCCTGAG 58.945 38.462 16.03 0.00 39.74 3.35
2982 3233 6.966751 AGGATCTGAAGAAATTCATTCCTGA 58.033 36.000 16.03 2.20 39.74 3.86
2983 3234 7.028926 CAGGATCTGAAGAAATTCATTCCTG 57.971 40.000 22.43 22.43 44.95 3.86
2984 3235 6.966751 TCAGGATCTGAAGAAATTCATTCCT 58.033 36.000 13.04 13.04 40.84 3.36
2985 3236 7.012232 GTCTCAGGATCTGAAGAAATTCATTCC 59.988 40.741 0.00 10.10 40.18 3.01
2986 3237 7.551974 TGTCTCAGGATCTGAAGAAATTCATTC 59.448 37.037 0.00 0.00 40.18 2.67
2987 3238 7.400439 TGTCTCAGGATCTGAAGAAATTCATT 58.600 34.615 0.00 0.00 40.18 2.57
2988 3239 6.955364 TGTCTCAGGATCTGAAGAAATTCAT 58.045 36.000 0.00 0.00 40.18 2.57
2989 3240 6.364568 TGTCTCAGGATCTGAAGAAATTCA 57.635 37.500 0.00 0.00 40.18 2.57
2990 3241 7.148272 CCTTTGTCTCAGGATCTGAAGAAATTC 60.148 40.741 0.00 0.00 40.18 2.17
2991 3242 6.658391 CCTTTGTCTCAGGATCTGAAGAAATT 59.342 38.462 0.00 0.00 40.18 1.82
2992 3243 6.179040 CCTTTGTCTCAGGATCTGAAGAAAT 58.821 40.000 0.00 0.00 40.18 2.17
2993 3244 5.072329 ACCTTTGTCTCAGGATCTGAAGAAA 59.928 40.000 0.00 2.30 40.18 2.52
2994 3245 4.594920 ACCTTTGTCTCAGGATCTGAAGAA 59.405 41.667 0.00 0.00 40.18 2.52
2995 3246 4.163427 ACCTTTGTCTCAGGATCTGAAGA 58.837 43.478 0.00 0.00 40.18 2.87
2996 3247 4.502962 GACCTTTGTCTCAGGATCTGAAG 58.497 47.826 0.00 0.00 40.18 3.02
2997 3248 3.261897 GGACCTTTGTCTCAGGATCTGAA 59.738 47.826 0.00 0.00 40.18 3.02
2998 3249 2.834549 GGACCTTTGTCTCAGGATCTGA 59.165 50.000 0.00 0.00 41.47 3.27
2999 3250 2.568956 TGGACCTTTGTCTCAGGATCTG 59.431 50.000 0.00 0.00 41.47 2.90
3000 3251 2.907892 TGGACCTTTGTCTCAGGATCT 58.092 47.619 0.00 0.00 41.47 2.75
3001 3252 3.703001 TTGGACCTTTGTCTCAGGATC 57.297 47.619 0.00 0.00 41.47 3.36
3002 3253 4.453480 TTTTGGACCTTTGTCTCAGGAT 57.547 40.909 0.00 0.00 41.47 3.24
3003 3254 3.943671 TTTTGGACCTTTGTCTCAGGA 57.056 42.857 0.00 0.00 41.47 3.86
3004 3255 6.840780 ATTATTTTGGACCTTTGTCTCAGG 57.159 37.500 0.00 0.00 41.47 3.86
3005 3256 8.115490 AGAATTATTTTGGACCTTTGTCTCAG 57.885 34.615 0.00 0.00 41.47 3.35
3006 3257 7.723616 TGAGAATTATTTTGGACCTTTGTCTCA 59.276 33.333 0.00 0.00 41.47 3.27
3007 3258 8.110860 TGAGAATTATTTTGGACCTTTGTCTC 57.889 34.615 0.00 0.00 41.47 3.36
3008 3259 8.655935 ATGAGAATTATTTTGGACCTTTGTCT 57.344 30.769 0.00 0.00 41.47 3.41
3010 3261 9.753674 TCTATGAGAATTATTTTGGACCTTTGT 57.246 29.630 0.00 0.00 0.00 2.83
3014 3265 8.907885 GCTTTCTATGAGAATTATTTTGGACCT 58.092 33.333 0.00 0.00 33.67 3.85
3015 3266 8.907885 AGCTTTCTATGAGAATTATTTTGGACC 58.092 33.333 0.00 0.00 33.67 4.46
3278 3529 8.923270 ACTTTCTTTCCCTTTTCACATATTTGA 58.077 29.630 0.00 0.00 0.00 2.69
3363 3614 9.206690 AGATCTAACAGAGGACAAAATCATCTA 57.793 33.333 0.00 0.00 46.74 1.98
3369 3620 6.479884 AGCAAGATCTAACAGAGGACAAAAT 58.520 36.000 0.00 0.00 0.00 1.82
3372 3623 4.081420 GGAGCAAGATCTAACAGAGGACAA 60.081 45.833 0.00 0.00 0.00 3.18
3383 3634 3.300388 AGGTCATTCGGAGCAAGATCTA 58.700 45.455 0.00 0.00 46.51 1.98
3416 3668 2.594654 GAGTATCTTTCAGCACGTGTCG 59.405 50.000 18.38 8.72 0.00 4.35
3441 3693 2.156098 GCCACACTTATTTTGGGACGA 58.844 47.619 0.00 0.00 0.00 4.20
3459 3711 3.265791 CCAGAGTTGTATCAAGTCAGCC 58.734 50.000 16.26 0.00 0.00 4.85
3469 3721 2.708861 TGTGAACCACCCAGAGTTGTAT 59.291 45.455 0.00 0.00 32.73 2.29
3477 3729 2.482721 GTCGTATTTGTGAACCACCCAG 59.517 50.000 0.00 0.00 32.73 4.45
3495 3747 4.433615 AGTGATGTTATGCTTACTGGTCG 58.566 43.478 0.00 0.00 0.00 4.79
3631 3883 5.347620 TGAAAGTAGCGCCCTCTAATTAA 57.652 39.130 2.29 0.00 0.00 1.40
3706 3958 8.155821 TGAAGTACCTATATGTCTCTCTTTCG 57.844 38.462 0.00 0.00 0.00 3.46
3893 4175 9.509855 GTCTAGTTGTTAGTCATGATAGAAGTG 57.490 37.037 0.00 0.00 0.00 3.16
3899 4181 9.639601 CAAGTTGTCTAGTTGTTAGTCATGATA 57.360 33.333 0.00 0.00 33.33 2.15
3950 4232 4.518970 TGTGGAGGAAGCTATTGTTTCAAC 59.481 41.667 6.14 0.14 35.50 3.18
3957 4239 3.629398 GGTGATTGTGGAGGAAGCTATTG 59.371 47.826 0.00 0.00 0.00 1.90
3968 4250 1.710244 ACCATCTTGGGTGATTGTGGA 59.290 47.619 0.00 0.00 43.37 4.02
3978 4260 8.593679 TGTAATATACTGATGTACCATCTTGGG 58.406 37.037 5.87 0.00 43.37 4.12
4036 4318 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
4037 4319 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
4038 4320 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
4039 4321 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
4040 4322 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
4041 4323 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
4063 4345 8.158132 TCCCATAATGTAGTGTAGTGTCAAAAA 58.842 33.333 0.00 0.00 0.00 1.94
4064 4346 7.604927 GTCCCATAATGTAGTGTAGTGTCAAAA 59.395 37.037 0.00 0.00 0.00 2.44
4065 4347 7.101054 GTCCCATAATGTAGTGTAGTGTCAAA 58.899 38.462 0.00 0.00 0.00 2.69
4066 4348 6.626402 CGTCCCATAATGTAGTGTAGTGTCAA 60.626 42.308 0.00 0.00 0.00 3.18
4067 4349 5.163591 CGTCCCATAATGTAGTGTAGTGTCA 60.164 44.000 0.00 0.00 0.00 3.58
4068 4350 5.279384 CGTCCCATAATGTAGTGTAGTGTC 58.721 45.833 0.00 0.00 0.00 3.67
4069 4351 4.098960 CCGTCCCATAATGTAGTGTAGTGT 59.901 45.833 0.00 0.00 0.00 3.55
4070 4352 4.340097 TCCGTCCCATAATGTAGTGTAGTG 59.660 45.833 0.00 0.00 0.00 2.74
4071 4353 4.539726 TCCGTCCCATAATGTAGTGTAGT 58.460 43.478 0.00 0.00 0.00 2.73
4072 4354 4.022242 CCTCCGTCCCATAATGTAGTGTAG 60.022 50.000 0.00 0.00 0.00 2.74
4073 4355 3.893200 CCTCCGTCCCATAATGTAGTGTA 59.107 47.826 0.00 0.00 0.00 2.90
4074 4356 2.698797 CCTCCGTCCCATAATGTAGTGT 59.301 50.000 0.00 0.00 0.00 3.55
4075 4357 2.037251 CCCTCCGTCCCATAATGTAGTG 59.963 54.545 0.00 0.00 0.00 2.74
4076 4358 2.090943 TCCCTCCGTCCCATAATGTAGT 60.091 50.000 0.00 0.00 0.00 2.73
4077 4359 2.563179 CTCCCTCCGTCCCATAATGTAG 59.437 54.545 0.00 0.00 0.00 2.74
4078 4360 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
4079 4361 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
4080 4362 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
4081 4363 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
4082 4364 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
4083 4365 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
4084 4366 0.635009 TTCTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
4085 4367 0.635009 ATTCTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
4086 4368 1.790818 AATTCTACTCCCTCCGTCCC 58.209 55.000 0.00 0.00 0.00 4.46
4087 4369 3.908643 AAAATTCTACTCCCTCCGTCC 57.091 47.619 0.00 0.00 0.00 4.79
4088 4370 8.953368 TTTATTAAAATTCTACTCCCTCCGTC 57.047 34.615 0.00 0.00 0.00 4.79
4089 4371 9.392259 CTTTTATTAAAATTCTACTCCCTCCGT 57.608 33.333 2.20 0.00 0.00 4.69
4090 4372 8.837389 CCTTTTATTAAAATTCTACTCCCTCCG 58.163 37.037 2.20 0.00 0.00 4.63
4091 4373 9.132923 CCCTTTTATTAAAATTCTACTCCCTCC 57.867 37.037 2.20 0.00 0.00 4.30
4092 4374 9.132923 CCCCTTTTATTAAAATTCTACTCCCTC 57.867 37.037 2.20 0.00 0.00 4.30
4093 4375 8.065627 CCCCCTTTTATTAAAATTCTACTCCCT 58.934 37.037 2.20 0.00 0.00 4.20
4094 4376 8.063153 TCCCCCTTTTATTAAAATTCTACTCCC 58.937 37.037 2.20 0.00 0.00 4.30
4095 4377 9.483489 TTCCCCCTTTTATTAAAATTCTACTCC 57.517 33.333 2.20 0.00 0.00 3.85
4121 4403 2.837498 ACGCGGTGTACCTTAGTTTTT 58.163 42.857 12.47 0.00 0.00 1.94
4122 4404 2.531522 ACGCGGTGTACCTTAGTTTT 57.468 45.000 12.47 0.00 0.00 2.43
4123 4405 2.531522 AACGCGGTGTACCTTAGTTT 57.468 45.000 12.47 0.00 0.00 2.66
4124 4406 2.531522 AAACGCGGTGTACCTTAGTT 57.468 45.000 12.47 0.51 0.00 2.24
4125 4407 3.514645 CATAAACGCGGTGTACCTTAGT 58.485 45.455 12.47 0.00 0.00 2.24



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.