Multiple sequence alignment - TraesCS2B01G271900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G271900 chr2B 100.000 5914 0 0 1 5914 373475687 373481600 0.000000e+00 10922.0
1 TraesCS2B01G271900 chr2D 95.206 3880 124 24 1583 5434 304964025 304967870 0.000000e+00 6078.0
2 TraesCS2B01G271900 chr2D 94.828 870 26 10 590 1457 304963134 304963986 0.000000e+00 1339.0
3 TraesCS2B01G271900 chr2D 89.778 225 16 3 5435 5657 304967916 304968135 1.250000e-71 281.0
4 TraesCS2B01G271900 chr2D 95.172 145 7 0 5770 5914 304968400 304968544 4.610000e-56 230.0
5 TraesCS2B01G271900 chr3A 87.928 1723 142 24 2713 4379 11893982 11892270 0.000000e+00 1969.0
6 TraesCS2B01G271900 chr3A 90.088 454 41 1 4474 4923 11892185 11891732 2.370000e-163 586.0
7 TraesCS2B01G271900 chr3A 88.235 425 38 7 931 1354 11895238 11894825 1.140000e-136 497.0
8 TraesCS2B01G271900 chr3A 83.130 409 50 8 1855 2244 11894394 11893986 7.290000e-94 355.0
9 TraesCS2B01G271900 chr2A 84.012 1670 236 24 2715 4381 383598823 383600464 0.000000e+00 1576.0
10 TraesCS2B01G271900 chr2A 94.427 646 28 5 668 1311 383596750 383597389 0.000000e+00 987.0
11 TraesCS2B01G271900 chr2A 86.587 589 70 7 1 581 603554645 603554058 5.000000e-180 641.0
12 TraesCS2B01G271900 chr2A 86.565 588 69 8 1 581 632404918 632405502 1.800000e-179 640.0
13 TraesCS2B01G271900 chr2A 82.123 179 18 5 2044 2209 383598138 383598315 2.220000e-29 141.0
14 TraesCS2B01G271900 chr2A 88.235 51 4 2 590 638 118456840 118456790 6.400000e-05 60.2
15 TraesCS2B01G271900 chr3D 86.230 886 90 17 3508 4379 9096543 9097410 0.000000e+00 931.0
16 TraesCS2B01G271900 chr3D 89.466 655 46 10 2680 3317 9095898 9096546 0.000000e+00 806.0
17 TraesCS2B01G271900 chr3D 86.735 588 69 7 1 581 332415926 332415341 0.000000e+00 645.0
18 TraesCS2B01G271900 chr3D 88.119 505 54 3 4473 4972 9097490 9097993 3.950000e-166 595.0
19 TraesCS2B01G271900 chr3D 83.409 663 63 25 808 1454 9093999 9094630 6.650000e-159 571.0
20 TraesCS2B01G271900 chr3D 83.788 586 76 11 1855 2421 9095318 9095903 6.740000e-149 538.0
21 TraesCS2B01G271900 chr7D 86.935 597 68 7 1 590 530666738 530666145 0.000000e+00 662.0
22 TraesCS2B01G271900 chr1A 87.075 588 68 6 1 581 64854214 64854800 0.000000e+00 658.0
23 TraesCS2B01G271900 chr7A 86.905 588 69 6 1 581 657638235 657638821 0.000000e+00 652.0
24 TraesCS2B01G271900 chr7A 86.735 588 70 6 1 581 516137591 516137005 0.000000e+00 647.0
25 TraesCS2B01G271900 chr7A 86.097 597 75 6 1 590 12066615 12066020 2.320000e-178 636.0
26 TraesCS2B01G271900 chr5A 86.565 588 71 6 1 581 377138807 377139393 5.000000e-180 641.0
27 TraesCS2B01G271900 chr3B 84.211 57 7 2 5663 5719 418530004 418530058 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G271900 chr2B 373475687 373481600 5913 False 10922.000000 10922 100.00000 1 5914 1 chr2B.!!$F1 5913
1 TraesCS2B01G271900 chr2D 304963134 304968544 5410 False 1982.000000 6078 93.74600 590 5914 4 chr2D.!!$F1 5324
2 TraesCS2B01G271900 chr3A 11891732 11895238 3506 True 851.750000 1969 87.34525 931 4923 4 chr3A.!!$R1 3992
3 TraesCS2B01G271900 chr2A 383596750 383600464 3714 False 901.333333 1576 86.85400 668 4381 3 chr2A.!!$F2 3713
4 TraesCS2B01G271900 chr2A 603554058 603554645 587 True 641.000000 641 86.58700 1 581 1 chr2A.!!$R2 580
5 TraesCS2B01G271900 chr2A 632404918 632405502 584 False 640.000000 640 86.56500 1 581 1 chr2A.!!$F1 580
6 TraesCS2B01G271900 chr3D 9093999 9097993 3994 False 688.200000 931 86.20240 808 4972 5 chr3D.!!$F1 4164
7 TraesCS2B01G271900 chr3D 332415341 332415926 585 True 645.000000 645 86.73500 1 581 1 chr3D.!!$R1 580
8 TraesCS2B01G271900 chr7D 530666145 530666738 593 True 662.000000 662 86.93500 1 590 1 chr7D.!!$R1 589
9 TraesCS2B01G271900 chr1A 64854214 64854800 586 False 658.000000 658 87.07500 1 581 1 chr1A.!!$F1 580
10 TraesCS2B01G271900 chr7A 657638235 657638821 586 False 652.000000 652 86.90500 1 581 1 chr7A.!!$F1 580
11 TraesCS2B01G271900 chr7A 516137005 516137591 586 True 647.000000 647 86.73500 1 581 1 chr7A.!!$R2 580
12 TraesCS2B01G271900 chr7A 12066020 12066615 595 True 636.000000 636 86.09700 1 590 1 chr7A.!!$R1 589
13 TraesCS2B01G271900 chr5A 377138807 377139393 586 False 641.000000 641 86.56500 1 581 1 chr5A.!!$F1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
668 678 1.065926 AGAGGCGATGCAGTTGAATGA 60.066 47.619 0.0 0.00 0.00 2.57 F
1684 1916 0.304705 GCCGATTGTATGAACTGCCG 59.695 55.000 0.0 0.00 0.00 5.69 F
1942 2477 0.819666 GGGCGATGAAAAGGCTAGGG 60.820 60.000 0.0 0.00 0.00 3.53 F
2706 3331 2.047465 AGACTGCAAGCTCAGGCG 60.047 61.111 7.3 2.46 46.57 5.52 F
3629 4295 0.468226 AACGCTGGAACAACTGAGGA 59.532 50.000 0.0 0.00 38.70 3.71 F
3926 4592 1.076332 GATTGTTACGACGCTTGGCT 58.924 50.000 0.0 0.00 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1765 2001 1.002544 GGCTCTTGCTTGTCTACACCT 59.997 52.381 0.0 0.0 39.59 4.00 R
3210 3876 0.324943 GCCCTCAGGTCTGTTTGCTA 59.675 55.000 0.0 0.0 34.57 3.49 R
3620 4286 1.163554 GGCAGCTTCTTCCTCAGTTG 58.836 55.000 0.0 0.0 0.00 3.16 R
4004 4678 0.979665 TGGAAGAAGCTCAGGACAGG 59.020 55.000 0.0 0.0 0.00 4.00 R
4817 5542 0.991146 TGAGGCAAGCAGGGATGTAA 59.009 50.000 0.0 0.0 0.00 2.41 R
5841 6838 0.106708 ACCGAGTTGCAGTGATGTGT 59.893 50.000 0.0 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.108284 CATGAAAAATATTTACCCCATTTGGAC 57.892 33.333 0.01 0.00 37.39 4.02
62 64 2.415776 CCATTTGGACATGTTGGTTGC 58.584 47.619 0.00 0.00 37.39 4.17
236 239 3.810310 TCATTGGTTTGGTGGTTGTTC 57.190 42.857 0.00 0.00 0.00 3.18
275 278 2.017049 CATGTCCCTGATTCGAAACCC 58.983 52.381 0.00 0.00 0.00 4.11
291 294 3.621682 AACCCAACCATCCCTTGTTTA 57.378 42.857 0.00 0.00 0.00 2.01
293 296 4.140575 ACCCAACCATCCCTTGTTTATT 57.859 40.909 0.00 0.00 0.00 1.40
294 297 4.498493 ACCCAACCATCCCTTGTTTATTT 58.502 39.130 0.00 0.00 0.00 1.40
295 298 4.910913 ACCCAACCATCCCTTGTTTATTTT 59.089 37.500 0.00 0.00 0.00 1.82
355 359 8.935614 ATCATTTTATTTAGGGGCTTAGTACC 57.064 34.615 0.00 0.00 0.00 3.34
411 419 3.369175 AGTCTGCAGATCTACCATGTGA 58.631 45.455 21.47 0.00 0.00 3.58
413 421 3.131933 GTCTGCAGATCTACCATGTGACT 59.868 47.826 21.47 0.00 0.00 3.41
424 432 1.134401 CCATGTGACTCGGGCTTACAT 60.134 52.381 0.00 0.00 32.60 2.29
425 433 2.205074 CATGTGACTCGGGCTTACATC 58.795 52.381 0.00 0.00 30.15 3.06
429 437 1.673808 GACTCGGGCTTACATCGGGT 61.674 60.000 0.00 0.00 40.58 5.28
438 446 1.906105 TTACATCGGGTCCTGGCCAC 61.906 60.000 0.00 0.00 0.00 5.01
447 455 2.203070 CCTGGCCACGCTGGTATC 60.203 66.667 0.00 0.00 40.46 2.24
449 457 2.687200 TGGCCACGCTGGTATCCT 60.687 61.111 0.00 0.00 40.46 3.24
468 477 2.295349 CCTACATAGGCCACGATACGTT 59.705 50.000 5.01 0.00 35.59 3.99
470 479 1.752498 ACATAGGCCACGATACGTTCA 59.248 47.619 5.01 0.00 38.32 3.18
518 527 4.771590 ACATTCGTGCAAGTTTGATGAT 57.228 36.364 10.34 0.00 0.00 2.45
528 537 5.067544 TGCAAGTTTGATGATCAGAAACACA 59.932 36.000 24.47 18.76 32.96 3.72
640 649 6.302269 AGGATCAGTTAGAAATGCCCTTATG 58.698 40.000 0.00 0.00 0.00 1.90
654 664 2.943033 CCCTTATGGTTAACAAGAGGCG 59.057 50.000 8.10 0.00 35.20 5.52
656 666 4.451900 CCTTATGGTTAACAAGAGGCGAT 58.548 43.478 8.10 0.00 31.26 4.58
658 668 1.448985 TGGTTAACAAGAGGCGATGC 58.551 50.000 8.10 0.00 0.00 3.91
661 671 2.076863 GTTAACAAGAGGCGATGCAGT 58.923 47.619 0.00 0.00 0.00 4.40
665 675 1.159285 CAAGAGGCGATGCAGTTGAA 58.841 50.000 0.00 0.00 0.00 2.69
666 676 1.741706 CAAGAGGCGATGCAGTTGAAT 59.258 47.619 0.00 0.00 0.00 2.57
668 678 1.065926 AGAGGCGATGCAGTTGAATGA 60.066 47.619 0.00 0.00 0.00 2.57
669 679 1.739466 GAGGCGATGCAGTTGAATGAA 59.261 47.619 0.00 0.00 0.00 2.57
670 680 1.741706 AGGCGATGCAGTTGAATGAAG 59.258 47.619 0.00 0.00 0.00 3.02
671 681 1.202222 GGCGATGCAGTTGAATGAAGG 60.202 52.381 0.00 0.00 0.00 3.46
672 682 1.202222 GCGATGCAGTTGAATGAAGGG 60.202 52.381 0.00 0.00 0.00 3.95
697 707 2.492088 CAAAAGGGGAAGGGATTCGAAC 59.508 50.000 0.00 0.00 0.00 3.95
751 761 4.309099 GGCATTTCAGACATTTTGCTGAA 58.691 39.130 0.00 0.00 46.20 3.02
865 875 2.345760 CCATTCCCCAGCACAGCAC 61.346 63.158 0.00 0.00 0.00 4.40
866 876 1.604308 CATTCCCCAGCACAGCACA 60.604 57.895 0.00 0.00 0.00 4.57
867 877 1.604593 ATTCCCCAGCACAGCACAC 60.605 57.895 0.00 0.00 0.00 3.82
868 878 2.356173 ATTCCCCAGCACAGCACACA 62.356 55.000 0.00 0.00 0.00 3.72
921 931 2.375345 CCACCCTAATGCCCTCCGT 61.375 63.158 0.00 0.00 0.00 4.69
928 938 3.434453 CCCTAATGCCCTCCGTTAATCAA 60.434 47.826 0.00 0.00 0.00 2.57
1277 1290 2.158652 TCGTCTTCCTCTCATCCGGTAT 60.159 50.000 0.00 0.00 0.00 2.73
1299 1312 1.302033 CAAGCCAACCACGCTCTCT 60.302 57.895 0.00 0.00 34.84 3.10
1460 1540 9.686683 ATTAAATTAAGTCCTGCTGTTGTATCT 57.313 29.630 0.00 0.00 0.00 1.98
1463 1543 8.723942 AATTAAGTCCTGCTGTTGTATCTAAG 57.276 34.615 0.00 0.00 0.00 2.18
1464 1544 7.476540 TTAAGTCCTGCTGTTGTATCTAAGA 57.523 36.000 0.00 0.00 0.00 2.10
1465 1545 6.552445 AAGTCCTGCTGTTGTATCTAAGAT 57.448 37.500 0.00 0.00 0.00 2.40
1466 1546 5.911752 AGTCCTGCTGTTGTATCTAAGATG 58.088 41.667 0.00 0.00 0.00 2.90
1467 1547 4.509600 GTCCTGCTGTTGTATCTAAGATGC 59.490 45.833 0.00 0.00 0.00 3.91
1468 1548 3.812053 CCTGCTGTTGTATCTAAGATGCC 59.188 47.826 0.00 0.00 0.00 4.40
1469 1549 4.444022 CCTGCTGTTGTATCTAAGATGCCT 60.444 45.833 0.00 0.00 0.00 4.75
1470 1550 5.102953 TGCTGTTGTATCTAAGATGCCTT 57.897 39.130 0.00 0.00 36.43 4.35
1471 1551 5.500234 TGCTGTTGTATCTAAGATGCCTTT 58.500 37.500 0.00 0.00 33.94 3.11
1472 1552 5.945784 TGCTGTTGTATCTAAGATGCCTTTT 59.054 36.000 0.00 0.00 33.94 2.27
1473 1553 6.127925 TGCTGTTGTATCTAAGATGCCTTTTG 60.128 38.462 0.00 0.00 33.94 2.44
1474 1554 6.678900 GCTGTTGTATCTAAGATGCCTTTTGG 60.679 42.308 0.00 0.00 44.18 3.28
1475 1555 5.652014 TGTTGTATCTAAGATGCCTTTTGGG 59.348 40.000 0.00 0.00 40.82 4.12
1486 1566 2.706555 CCTTTTGGGCGTCTTTTCTC 57.293 50.000 0.00 0.00 35.46 2.87
1487 1567 1.953686 CCTTTTGGGCGTCTTTTCTCA 59.046 47.619 0.00 0.00 35.46 3.27
1488 1568 2.360801 CCTTTTGGGCGTCTTTTCTCAA 59.639 45.455 0.00 0.00 35.46 3.02
1489 1569 3.181480 CCTTTTGGGCGTCTTTTCTCAAA 60.181 43.478 0.00 0.00 35.46 2.69
1490 1570 4.429108 CTTTTGGGCGTCTTTTCTCAAAA 58.571 39.130 0.00 0.00 34.38 2.44
1491 1571 4.457834 TTTGGGCGTCTTTTCTCAAAAA 57.542 36.364 0.00 0.00 33.42 1.94
1613 1845 3.641437 TTGCTGCCATGTTTGTAGAAC 57.359 42.857 0.00 0.00 0.00 3.01
1622 1854 6.183360 TGCCATGTTTGTAGAACGTTAGTTTT 60.183 34.615 0.00 0.00 41.34 2.43
1684 1916 0.304705 GCCGATTGTATGAACTGCCG 59.695 55.000 0.00 0.00 0.00 5.69
1703 1935 2.865551 CCGGAATGGCAATAACAAATGC 59.134 45.455 0.00 0.00 41.82 3.56
1707 1940 5.984926 CGGAATGGCAATAACAAATGCTAAT 59.015 36.000 0.00 0.00 42.20 1.73
1769 2005 3.722728 AGAGCTGCAAAGAAAAAGGTG 57.277 42.857 1.02 0.00 0.00 4.00
1771 2007 4.207165 AGAGCTGCAAAGAAAAAGGTGTA 58.793 39.130 1.02 0.00 0.00 2.90
1822 2299 2.642171 AGAGGAGTTATCACCACCCA 57.358 50.000 0.00 0.00 0.00 4.51
1834 2365 2.124570 CACCCATCCTGAAGGCCG 60.125 66.667 0.00 0.00 34.44 6.13
1838 2369 3.801997 CATCCTGAAGGCCGGGCT 61.802 66.667 27.45 27.45 41.29 5.19
1942 2477 0.819666 GGGCGATGAAAAGGCTAGGG 60.820 60.000 0.00 0.00 0.00 3.53
1970 2509 6.522946 GTTTTGGGTCAGATATAGGTAGGTC 58.477 44.000 0.00 0.00 0.00 3.85
2265 2850 8.810652 TTTGTTGCCACAAATAAATCTAGAAC 57.189 30.769 11.77 0.00 46.06 3.01
2336 2930 6.554605 CCCATTTAATAACCAGGTGGATGATT 59.445 38.462 2.10 2.10 38.94 2.57
2351 2945 2.818130 TGATTGGCTCCAAAAAGTGC 57.182 45.000 5.34 0.00 39.55 4.40
2436 3034 4.026052 TCAGAATGGCAGTATCTGTCTCA 58.974 43.478 20.37 5.60 41.04 3.27
2500 3098 9.173021 TGAAGTTTTGACTGAACTGAAATTCTA 57.827 29.630 0.00 0.00 37.41 2.10
2530 3128 9.395707 CGTGATAAGTATTCCTTGTATCTACAC 57.604 37.037 0.00 0.00 35.64 2.90
2665 3287 5.068460 GCTGGAGCTCTTCTCTATAGAAACA 59.932 44.000 14.64 0.00 41.60 2.83
2706 3331 2.047465 AGACTGCAAGCTCAGGCG 60.047 61.111 7.30 2.46 46.57 5.52
2756 3389 5.292101 GTGTCTTGATATTTTCTCCAGGACG 59.708 44.000 0.00 0.00 38.12 4.79
3062 3703 3.328050 CAGAGGTTCTTTAGGGGAGTTGT 59.672 47.826 0.00 0.00 0.00 3.32
3210 3876 5.251764 AGCTGTCTATGCAGAGTCAAAAAT 58.748 37.500 8.44 0.00 38.70 1.82
3371 4037 4.164843 ACCCTTAGTGAGAAACAGCAAA 57.835 40.909 0.00 0.00 0.00 3.68
3620 4286 0.941542 TGCTGTTACAACGCTGGAAC 59.058 50.000 6.97 6.97 45.45 3.62
3629 4295 0.468226 AACGCTGGAACAACTGAGGA 59.532 50.000 0.00 0.00 38.70 3.71
3926 4592 1.076332 GATTGTTACGACGCTTGGCT 58.924 50.000 0.00 0.00 0.00 4.75
4004 4678 9.846248 AATTACTTTGTCTCATTTATGCACTTC 57.154 29.630 0.00 0.00 0.00 3.01
4049 4744 6.003326 TGTACACATGTCTGAATTTCACCAT 58.997 36.000 0.00 0.00 0.00 3.55
4058 4753 5.525378 GTCTGAATTTCACCATAGCTGTAGG 59.475 44.000 0.00 0.00 0.00 3.18
4133 4836 1.079057 GCTCTCTCGTTTGGTCCCC 60.079 63.158 0.00 0.00 0.00 4.81
4391 5103 7.581476 ACGAAAATGTATGTTGAACAGTTAGG 58.419 34.615 3.74 0.00 34.35 2.69
4413 5129 1.417890 TGGCCTAGGCATAGCTCTTTC 59.582 52.381 34.09 13.69 44.11 2.62
4555 5280 7.560368 CAGGTTCTGAGAGTTTATGTTCCTAT 58.440 38.462 0.00 0.00 32.44 2.57
4657 5382 1.688735 TGGTATCATCGGCCTGAAGAG 59.311 52.381 0.00 0.00 0.00 2.85
4817 5542 0.036164 TGAGCACCATTTACACCGCT 59.964 50.000 0.00 0.00 0.00 5.52
4827 5552 2.684001 TTACACCGCTTACATCCCTG 57.316 50.000 0.00 0.00 0.00 4.45
4904 5629 2.284995 ACCACCTCCAGAGCTCCC 60.285 66.667 10.93 0.00 0.00 4.30
4949 5679 8.397215 TGAATCAATCAAATCAAAATGCGTAG 57.603 30.769 0.00 0.00 34.30 3.51
4978 5708 2.592102 ACACAAGGATGACATTGCCT 57.408 45.000 0.00 0.00 40.78 4.75
4993 5723 6.105397 ACATTGCCTGTCAAATTTCTGAAT 57.895 33.333 0.00 0.00 38.34 2.57
5042 5784 2.424956 GCCTTCGAATTTCTGCAGGATT 59.575 45.455 15.13 14.28 0.00 3.01
5101 5843 1.080772 CGACCACGCTGTGAAGCTA 60.081 57.895 9.75 0.00 35.23 3.32
5149 5891 2.303163 TGTCCCGTGTACATACATGC 57.697 50.000 0.00 0.00 40.87 4.06
5171 5913 2.984471 GCTGTTGCATGATGAACACTTG 59.016 45.455 0.00 0.00 39.41 3.16
5178 5920 5.658468 TGCATGATGAACACTTGTTGAAAA 58.342 33.333 0.00 0.00 38.56 2.29
5183 5925 6.843208 TGATGAACACTTGTTGAAAAACGTA 58.157 32.000 0.00 0.00 38.56 3.57
5388 6130 6.265196 TGTCCATGCTTGTATTCAGAAAAAGT 59.735 34.615 0.00 0.00 0.00 2.66
5414 6156 2.092429 TGTTTGTGCCTCCTGAAGAACT 60.092 45.455 0.00 0.00 0.00 3.01
5417 6159 1.070758 TGTGCCTCCTGAAGAACTGTC 59.929 52.381 0.00 0.00 0.00 3.51
5512 6299 7.155328 CACCCTACATAACTTCATAGGTGATC 58.845 42.308 0.00 0.00 33.60 2.92
5577 6364 6.595326 TCAACATGTAACTATGCAGGAGAAAG 59.405 38.462 0.00 0.00 0.00 2.62
5581 6368 7.335422 ACATGTAACTATGCAGGAGAAAGAAAG 59.665 37.037 0.00 0.00 0.00 2.62
5684 6473 8.985315 TTTGCAATTATATCCTCATTCTGTCT 57.015 30.769 0.00 0.00 0.00 3.41
5685 6474 8.613060 TTGCAATTATATCCTCATTCTGTCTC 57.387 34.615 0.00 0.00 0.00 3.36
5686 6475 7.164122 TGCAATTATATCCTCATTCTGTCTCC 58.836 38.462 0.00 0.00 0.00 3.71
5687 6476 7.164122 GCAATTATATCCTCATTCTGTCTCCA 58.836 38.462 0.00 0.00 0.00 3.86
5688 6477 7.663081 GCAATTATATCCTCATTCTGTCTCCAA 59.337 37.037 0.00 0.00 0.00 3.53
5689 6478 9.565090 CAATTATATCCTCATTCTGTCTCCAAA 57.435 33.333 0.00 0.00 0.00 3.28
5694 6483 6.627087 TCCTCATTCTGTCTCCAAATAAGT 57.373 37.500 0.00 0.00 0.00 2.24
5695 6484 6.409704 TCCTCATTCTGTCTCCAAATAAGTG 58.590 40.000 0.00 0.00 0.00 3.16
5696 6485 6.013379 TCCTCATTCTGTCTCCAAATAAGTGT 60.013 38.462 0.00 0.00 0.00 3.55
5697 6486 6.314896 CCTCATTCTGTCTCCAAATAAGTGTC 59.685 42.308 0.00 0.00 0.00 3.67
5698 6487 7.009179 TCATTCTGTCTCCAAATAAGTGTCT 57.991 36.000 0.00 0.00 0.00 3.41
5699 6488 7.099764 TCATTCTGTCTCCAAATAAGTGTCTC 58.900 38.462 0.00 0.00 0.00 3.36
5700 6489 6.419484 TTCTGTCTCCAAATAAGTGTCTCA 57.581 37.500 0.00 0.00 0.00 3.27
5701 6490 6.419484 TCTGTCTCCAAATAAGTGTCTCAA 57.581 37.500 0.00 0.00 0.00 3.02
5702 6491 6.223852 TCTGTCTCCAAATAAGTGTCTCAAC 58.776 40.000 0.00 0.00 0.00 3.18
5703 6492 6.042093 TCTGTCTCCAAATAAGTGTCTCAACT 59.958 38.462 0.00 0.00 0.00 3.16
5704 6493 6.591935 TGTCTCCAAATAAGTGTCTCAACTT 58.408 36.000 0.00 0.00 42.89 2.66
5705 6494 7.054124 TGTCTCCAAATAAGTGTCTCAACTTT 58.946 34.615 0.00 0.00 40.77 2.66
5706 6495 8.208224 TGTCTCCAAATAAGTGTCTCAACTTTA 58.792 33.333 0.00 0.00 40.77 1.85
5707 6496 8.713271 GTCTCCAAATAAGTGTCTCAACTTTAG 58.287 37.037 0.00 0.00 40.77 1.85
5708 6497 8.429641 TCTCCAAATAAGTGTCTCAACTTTAGT 58.570 33.333 0.00 0.00 40.77 2.24
5709 6498 9.706691 CTCCAAATAAGTGTCTCAACTTTAGTA 57.293 33.333 0.00 0.00 40.77 1.82
5710 6499 9.485206 TCCAAATAAGTGTCTCAACTTTAGTAC 57.515 33.333 0.00 0.00 40.77 2.73
5711 6500 9.490379 CCAAATAAGTGTCTCAACTTTAGTACT 57.510 33.333 0.00 0.00 40.77 2.73
5716 6505 8.868635 AAGTGTCTCAACTTTAGTACTACAAC 57.131 34.615 0.91 0.00 37.05 3.32
5717 6506 8.235359 AGTGTCTCAACTTTAGTACTACAACT 57.765 34.615 0.91 0.00 0.00 3.16
5718 6507 8.693625 AGTGTCTCAACTTTAGTACTACAACTT 58.306 33.333 0.91 0.00 0.00 2.66
5719 6508 9.310716 GTGTCTCAACTTTAGTACTACAACTTT 57.689 33.333 0.91 0.00 0.00 2.66
5762 6551 8.587952 ACAAATAAAGTATTGCAAAGTTCCAC 57.412 30.769 1.71 0.00 0.00 4.02
5763 6552 7.655732 ACAAATAAAGTATTGCAAAGTTCCACC 59.344 33.333 1.71 0.00 0.00 4.61
5823 6820 3.726790 TCTTGCAGTAATACCCAGGGTA 58.273 45.455 21.53 21.53 42.80 3.69
5841 6838 7.391620 CCAGGGTATCAACTAGTTAAAGTGAA 58.608 38.462 8.04 0.00 0.00 3.18
5842 6839 7.333672 CCAGGGTATCAACTAGTTAAAGTGAAC 59.666 40.741 8.04 3.69 0.00 3.18
5881 6878 7.380536 TCGGTGTAGAAATACATGTGTTTAGT 58.619 34.615 19.07 12.54 32.03 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.643310 ACCAACATGTCCAAATGGGG 58.357 50.000 16.08 4.06 37.22 4.96
51 52 1.080569 GGCTTCGGCAACCAACATG 60.081 57.895 0.00 0.00 43.96 3.21
62 64 0.541863 AGATTACCACCAGGCTTCGG 59.458 55.000 0.00 0.00 39.06 4.30
205 208 6.351202 CCACCAAACCAATGATCATACATGTT 60.351 38.462 9.04 7.34 0.00 2.71
211 214 5.083122 ACAACCACCAAACCAATGATCATA 58.917 37.500 9.04 0.00 0.00 2.15
236 239 1.833049 CCCCTACTAGGCTCGGGTG 60.833 68.421 0.00 0.00 34.81 4.61
257 260 1.060729 TGGGTTTCGAATCAGGGACA 58.939 50.000 0.00 0.00 0.00 4.02
264 267 1.749063 GGGATGGTTGGGTTTCGAATC 59.251 52.381 0.00 0.00 0.00 2.52
265 268 1.357761 AGGGATGGTTGGGTTTCGAAT 59.642 47.619 0.00 0.00 0.00 3.34
270 273 2.487746 AACAAGGGATGGTTGGGTTT 57.512 45.000 0.00 0.00 0.00 3.27
365 369 6.918892 TTTCATTTACGTATCATGTCCCTG 57.081 37.500 12.62 0.00 0.00 4.45
369 374 9.478019 CAGACTTTTTCATTTACGTATCATGTC 57.522 33.333 12.62 4.97 0.00 3.06
370 375 7.962918 GCAGACTTTTTCATTTACGTATCATGT 59.037 33.333 12.62 0.00 0.00 3.21
374 379 7.739295 TCTGCAGACTTTTTCATTTACGTATC 58.261 34.615 13.74 0.00 0.00 2.24
411 419 1.673808 GACCCGATGTAAGCCCGAGT 61.674 60.000 0.00 0.00 0.00 4.18
413 421 2.428925 GGACCCGATGTAAGCCCGA 61.429 63.158 0.00 0.00 0.00 5.14
429 437 2.687200 ATACCAGCGTGGCCAGGA 60.687 61.111 29.10 7.97 42.67 3.86
438 446 1.204941 GGCCTATGTAGGATACCAGCG 59.795 57.143 10.25 0.00 46.63 5.18
444 452 3.943381 CGTATCGTGGCCTATGTAGGATA 59.057 47.826 10.25 1.07 46.63 2.59
447 455 1.884579 ACGTATCGTGGCCTATGTAGG 59.115 52.381 3.32 1.57 41.88 3.18
449 457 2.950975 TGAACGTATCGTGGCCTATGTA 59.049 45.455 3.32 0.00 39.99 2.29
499 508 4.696877 TCTGATCATCAAACTTGCACGAAT 59.303 37.500 0.00 0.00 0.00 3.34
502 511 4.408993 TTCTGATCATCAAACTTGCACG 57.591 40.909 0.00 0.00 0.00 5.34
592 601 9.125026 CCTCAATACAGCCATAAAGACTAAAAT 57.875 33.333 0.00 0.00 0.00 1.82
593 602 8.325787 TCCTCAATACAGCCATAAAGACTAAAA 58.674 33.333 0.00 0.00 0.00 1.52
594 603 7.857456 TCCTCAATACAGCCATAAAGACTAAA 58.143 34.615 0.00 0.00 0.00 1.85
595 604 7.432148 TCCTCAATACAGCCATAAAGACTAA 57.568 36.000 0.00 0.00 0.00 2.24
596 605 7.290014 TGATCCTCAATACAGCCATAAAGACTA 59.710 37.037 0.00 0.00 0.00 2.59
597 606 5.957771 TCCTCAATACAGCCATAAAGACT 57.042 39.130 0.00 0.00 0.00 3.24
598 607 6.291377 TGATCCTCAATACAGCCATAAAGAC 58.709 40.000 0.00 0.00 0.00 3.01
607 616 7.519649 GCATTTCTAACTGATCCTCAATACAGC 60.520 40.741 0.00 0.00 34.25 4.40
609 618 6.767902 GGCATTTCTAACTGATCCTCAATACA 59.232 38.462 0.00 0.00 0.00 2.29
610 619 6.205658 GGGCATTTCTAACTGATCCTCAATAC 59.794 42.308 0.00 0.00 0.00 1.89
640 649 1.398390 CTGCATCGCCTCTTGTTAACC 59.602 52.381 2.48 0.00 0.00 2.85
654 664 1.753073 CCCCCTTCATTCAACTGCATC 59.247 52.381 0.00 0.00 0.00 3.91
656 666 0.482446 ACCCCCTTCATTCAACTGCA 59.518 50.000 0.00 0.00 0.00 4.41
658 668 2.584835 TGACCCCCTTCATTCAACTG 57.415 50.000 0.00 0.00 0.00 3.16
661 671 3.238597 CCTTTTGACCCCCTTCATTCAA 58.761 45.455 0.00 0.00 0.00 2.69
665 675 0.413434 CCCCTTTTGACCCCCTTCAT 59.587 55.000 0.00 0.00 0.00 2.57
666 676 0.703056 TCCCCTTTTGACCCCCTTCA 60.703 55.000 0.00 0.00 0.00 3.02
668 678 0.487325 CTTCCCCTTTTGACCCCCTT 59.513 55.000 0.00 0.00 0.00 3.95
669 679 1.443729 CCTTCCCCTTTTGACCCCCT 61.444 60.000 0.00 0.00 0.00 4.79
670 680 1.078528 CCTTCCCCTTTTGACCCCC 59.921 63.158 0.00 0.00 0.00 5.40
671 681 1.078528 CCCTTCCCCTTTTGACCCC 59.921 63.158 0.00 0.00 0.00 4.95
672 682 0.710588 ATCCCTTCCCCTTTTGACCC 59.289 55.000 0.00 0.00 0.00 4.46
697 707 3.129871 TCCGCCTTTTGCTTTTCAATTG 58.870 40.909 0.00 0.00 38.05 2.32
751 761 2.042930 GGGATGGGACCAGGGAGT 59.957 66.667 0.00 0.00 0.00 3.85
921 931 7.366191 GGGTTTAGTAGTGGAGGGATTGATTAA 60.366 40.741 0.00 0.00 0.00 1.40
928 938 2.631540 GGGGGTTTAGTAGTGGAGGGAT 60.632 54.545 0.00 0.00 0.00 3.85
1299 1312 4.391155 AGCATGGGTAAACAAACGAAGTA 58.609 39.130 0.00 0.00 45.00 2.24
1445 1525 4.443457 GGCATCTTAGATACAACAGCAGGA 60.443 45.833 0.00 0.00 0.00 3.86
1446 1526 3.812053 GGCATCTTAGATACAACAGCAGG 59.188 47.826 0.00 0.00 0.00 4.85
1447 1527 4.701765 AGGCATCTTAGATACAACAGCAG 58.298 43.478 0.00 0.00 0.00 4.24
1448 1528 4.760530 AGGCATCTTAGATACAACAGCA 57.239 40.909 0.00 0.00 0.00 4.41
1449 1529 6.261118 CAAAAGGCATCTTAGATACAACAGC 58.739 40.000 0.00 0.00 32.01 4.40
1450 1530 6.183360 CCCAAAAGGCATCTTAGATACAACAG 60.183 42.308 0.00 0.00 32.01 3.16
1451 1531 5.652014 CCCAAAAGGCATCTTAGATACAACA 59.348 40.000 0.00 0.00 32.01 3.33
1452 1532 6.136541 CCCAAAAGGCATCTTAGATACAAC 57.863 41.667 0.00 0.00 32.01 3.32
1467 1547 1.953686 TGAGAAAAGACGCCCAAAAGG 59.046 47.619 0.00 0.00 39.47 3.11
1468 1548 3.708563 TTGAGAAAAGACGCCCAAAAG 57.291 42.857 0.00 0.00 0.00 2.27
1469 1549 4.457834 TTTTGAGAAAAGACGCCCAAAA 57.542 36.364 0.00 0.00 33.02 2.44
1470 1550 4.457834 TTTTTGAGAAAAGACGCCCAAA 57.542 36.364 0.00 0.00 31.41 3.28
1489 1569 9.830975 ACAACAGCAGGACTTTTAATTATTTTT 57.169 25.926 0.00 0.00 0.00 1.94
1490 1570 9.260002 CACAACAGCAGGACTTTTAATTATTTT 57.740 29.630 0.00 0.00 0.00 1.82
1491 1571 7.872483 CCACAACAGCAGGACTTTTAATTATTT 59.128 33.333 0.00 0.00 0.00 1.40
1492 1572 7.232534 TCCACAACAGCAGGACTTTTAATTATT 59.767 33.333 0.00 0.00 0.00 1.40
1493 1573 6.719370 TCCACAACAGCAGGACTTTTAATTAT 59.281 34.615 0.00 0.00 0.00 1.28
1494 1574 6.016610 GTCCACAACAGCAGGACTTTTAATTA 60.017 38.462 0.00 0.00 46.45 1.40
1495 1575 4.892934 TCCACAACAGCAGGACTTTTAATT 59.107 37.500 0.00 0.00 0.00 1.40
1496 1576 4.278419 GTCCACAACAGCAGGACTTTTAAT 59.722 41.667 0.00 0.00 46.45 1.40
1497 1577 3.630312 GTCCACAACAGCAGGACTTTTAA 59.370 43.478 0.00 0.00 46.45 1.52
1498 1578 3.211045 GTCCACAACAGCAGGACTTTTA 58.789 45.455 0.00 0.00 46.45 1.52
1499 1579 2.024414 GTCCACAACAGCAGGACTTTT 58.976 47.619 0.00 0.00 46.45 2.27
1500 1580 1.680338 GTCCACAACAGCAGGACTTT 58.320 50.000 0.00 0.00 46.45 2.66
1576 1671 8.706492 TGGCAGCAATTTTTAGAAAATAGATG 57.294 30.769 0.00 1.39 0.00 2.90
1582 1811 7.066766 ACAAACATGGCAGCAATTTTTAGAAAA 59.933 29.630 0.00 0.00 0.00 2.29
1593 1822 2.031245 CGTTCTACAAACATGGCAGCAA 60.031 45.455 0.00 0.00 0.00 3.91
1596 1825 3.896648 AACGTTCTACAAACATGGCAG 57.103 42.857 0.00 0.00 0.00 4.85
1684 1916 7.280652 ACAATTAGCATTTGTTATTGCCATTCC 59.719 33.333 0.00 0.00 39.72 3.01
1745 1981 6.150140 ACACCTTTTTCTTTGCAGCTCTATAG 59.850 38.462 0.00 0.00 0.00 1.31
1750 1986 3.443099 ACACCTTTTTCTTTGCAGCTC 57.557 42.857 0.00 0.00 0.00 4.09
1754 1990 5.678616 GCTTGTCTACACCTTTTTCTTTGCA 60.679 40.000 0.00 0.00 0.00 4.08
1757 1993 6.377146 TCTTGCTTGTCTACACCTTTTTCTTT 59.623 34.615 0.00 0.00 0.00 2.52
1758 1994 5.885912 TCTTGCTTGTCTACACCTTTTTCTT 59.114 36.000 0.00 0.00 0.00 2.52
1765 2001 1.002544 GGCTCTTGCTTGTCTACACCT 59.997 52.381 0.00 0.00 39.59 4.00
1769 2005 1.399791 GCATGGCTCTTGCTTGTCTAC 59.600 52.381 0.00 0.00 39.59 2.59
1771 2007 1.303799 CGCATGGCTCTTGCTTGTCT 61.304 55.000 0.00 0.00 37.96 3.41
1792 2269 7.942341 TGGTGATAACTCCTCTTAACAAAACAT 59.058 33.333 0.00 0.00 0.00 2.71
1822 2299 3.483869 GAGCCCGGCCTTCAGGAT 61.484 66.667 5.55 0.00 37.39 3.24
1834 2365 5.815740 TGATAGTTTTATCTCGTTTGAGCCC 59.184 40.000 0.00 0.00 42.26 5.19
1838 2369 7.841915 TGCATGATAGTTTTATCTCGTTTGA 57.158 32.000 0.00 0.00 37.23 2.69
1942 2477 3.560068 CCTATATCTGACCCAAAACGCAC 59.440 47.826 0.00 0.00 0.00 5.34
2048 2618 2.547855 GGATTGCCAAAACTGGAACACC 60.548 50.000 0.00 0.00 0.00 4.16
2164 2746 7.509141 TGCTAATCTTTCAAAATCTGTGACA 57.491 32.000 0.00 0.00 0.00 3.58
2265 2850 8.737168 TTCCAGTAGTCTCAATAATTGGAATG 57.263 34.615 0.00 0.00 38.24 2.67
2278 2863 5.448360 GCATGAAAATGCTTCCAGTAGTCTC 60.448 44.000 0.00 0.00 43.79 3.36
2336 2930 1.733402 CGGTGCACTTTTTGGAGCCA 61.733 55.000 17.98 0.00 40.77 4.75
2375 2973 7.928908 AATAATGTGCCAAATTATGCGTTAG 57.071 32.000 0.84 0.00 31.98 2.34
2436 3034 7.181125 CCTAATGGCTCCTAATAGGACAGTAAT 59.819 40.741 4.61 0.00 40.06 1.89
2500 3098 5.086104 ACAAGGAATACTTATCACGCAGT 57.914 39.130 0.00 0.00 38.59 4.40
2706 3331 2.539338 TTTGGTTGTGACGGCGAGC 61.539 57.895 16.62 5.63 0.00 5.03
2756 3389 2.743928 CCACAGCCTCGCACTTCC 60.744 66.667 0.00 0.00 0.00 3.46
3062 3703 6.016192 TGTCACGAATAATAAACAAAGGGCAA 60.016 34.615 0.00 0.00 0.00 4.52
3210 3876 0.324943 GCCCTCAGGTCTGTTTGCTA 59.675 55.000 0.00 0.00 34.57 3.49
3371 4037 2.034221 GAAGACAAAGGCCGCCCT 59.966 61.111 5.55 0.00 45.77 5.19
3620 4286 1.163554 GGCAGCTTCTTCCTCAGTTG 58.836 55.000 0.00 0.00 0.00 3.16
3629 4295 2.512705 CTTCAGAAAGGGCAGCTTCTT 58.487 47.619 0.00 0.00 29.29 2.52
4004 4678 0.979665 TGGAAGAAGCTCAGGACAGG 59.020 55.000 0.00 0.00 0.00 4.00
4049 4744 9.642343 ATCAATCGGTTATATATCCTACAGCTA 57.358 33.333 7.99 0.00 0.00 3.32
4086 4789 5.127682 GCCCATATCCAACAAAGAATCTGTT 59.872 40.000 0.00 0.00 37.49 3.16
4103 4806 1.617850 CGAGAGAGCTCAAGCCCATAT 59.382 52.381 17.77 0.00 41.36 1.78
4304 5007 1.197721 CCCAGAGCAAAGTAAGCAACG 59.802 52.381 0.00 0.00 0.00 4.10
4391 5103 1.003959 GAGCTATGCCTAGGCCAGC 60.004 63.158 34.36 34.36 43.82 4.85
4395 5107 3.483808 AAGAAAGAGCTATGCCTAGGC 57.516 47.619 27.71 27.71 42.35 3.93
4413 5129 1.720852 GCCTATTTGCGCACACAAAAG 59.279 47.619 11.12 1.72 42.45 2.27
4555 5280 3.306917 TTCGTCCGTTGCTCTCATAAA 57.693 42.857 0.00 0.00 0.00 1.40
4657 5382 7.309928 GGGCAAGGATAGTAGAATAGTAGAACC 60.310 44.444 0.00 0.00 28.45 3.62
4679 5404 1.558167 TTATTGCGAGGAGTGGGGCA 61.558 55.000 0.00 0.00 0.00 5.36
4817 5542 0.991146 TGAGGCAAGCAGGGATGTAA 59.009 50.000 0.00 0.00 0.00 2.41
4877 5602 3.044305 GAGGTGGTGCGTGACTGC 61.044 66.667 0.00 0.00 0.00 4.40
4937 5667 5.182190 TGTTTCTAATGGCTACGCATTTTGA 59.818 36.000 0.00 0.00 0.00 2.69
4938 5668 5.286082 GTGTTTCTAATGGCTACGCATTTTG 59.714 40.000 0.00 0.00 0.00 2.44
4939 5669 5.048364 TGTGTTTCTAATGGCTACGCATTTT 60.048 36.000 0.00 0.00 0.00 1.82
4940 5670 4.457603 TGTGTTTCTAATGGCTACGCATTT 59.542 37.500 0.00 0.00 0.00 2.32
4941 5671 4.006989 TGTGTTTCTAATGGCTACGCATT 58.993 39.130 0.00 0.00 0.00 3.56
4949 5679 4.458989 TGTCATCCTTGTGTTTCTAATGGC 59.541 41.667 0.00 0.00 0.00 4.40
4978 5708 7.606858 TTGTTTGCAATTCAGAAATTTGACA 57.393 28.000 0.00 0.00 32.69 3.58
4993 5723 2.768527 TGGGTCATCCTTTTGTTTGCAA 59.231 40.909 0.00 0.00 36.20 4.08
5042 5784 1.535028 GCACGTGGACATTCATCACAA 59.465 47.619 18.88 0.00 0.00 3.33
5149 5891 1.198408 AGTGTTCATCATGCAACAGCG 59.802 47.619 0.00 0.00 33.16 5.18
5178 5920 9.362539 CAACAACCTAACATATAAGACTACGTT 57.637 33.333 0.00 0.00 0.00 3.99
5183 5925 7.334421 CACAGCAACAACCTAACATATAAGACT 59.666 37.037 0.00 0.00 0.00 3.24
5249 5991 1.391485 GCAGCAGATTGTCTACACACG 59.609 52.381 0.00 0.00 29.76 4.49
5388 6130 5.136828 TCTTCAGGAGGCACAAACATTTTA 58.863 37.500 0.00 0.00 0.00 1.52
5414 6156 1.550130 CCCCGTAAAGAGCTGGGACA 61.550 60.000 6.12 0.00 44.88 4.02
5417 6159 1.265454 ACTCCCCGTAAAGAGCTGGG 61.265 60.000 0.00 0.00 41.56 4.45
5487 6274 6.479972 TCACCTATGAAGTTATGTAGGGTG 57.520 41.667 0.00 0.00 38.39 4.61
5489 6276 6.295916 GGGATCACCTATGAAGTTATGTAGGG 60.296 46.154 10.68 0.00 38.69 3.53
5577 6364 5.894807 ACATGGTTGCATATTGTAGCTTTC 58.105 37.500 0.00 0.00 0.00 2.62
5581 6368 7.475015 CCATATACATGGTTGCATATTGTAGC 58.525 38.462 0.00 0.00 45.92 3.58
5658 6447 9.412460 AGACAGAATGAGGATATAATTGCAAAA 57.588 29.630 1.71 0.00 39.69 2.44
5659 6448 8.985315 AGACAGAATGAGGATATAATTGCAAA 57.015 30.769 1.71 0.00 39.69 3.68
5660 6449 7.663081 GGAGACAGAATGAGGATATAATTGCAA 59.337 37.037 0.00 0.00 39.69 4.08
5661 6450 7.164122 GGAGACAGAATGAGGATATAATTGCA 58.836 38.462 0.00 0.00 39.69 4.08
5662 6451 7.164122 TGGAGACAGAATGAGGATATAATTGC 58.836 38.462 0.00 0.00 39.69 3.56
5663 6452 9.565090 TTTGGAGACAGAATGAGGATATAATTG 57.435 33.333 0.00 0.00 44.54 2.32
5668 6457 8.943085 ACTTATTTGGAGACAGAATGAGGATAT 58.057 33.333 0.00 0.00 44.54 1.63
5669 6458 8.206867 CACTTATTTGGAGACAGAATGAGGATA 58.793 37.037 0.00 0.00 44.54 2.59
5670 6459 7.052873 CACTTATTTGGAGACAGAATGAGGAT 58.947 38.462 0.00 0.00 44.54 3.24
5671 6460 6.013379 ACACTTATTTGGAGACAGAATGAGGA 60.013 38.462 0.00 0.00 44.54 3.71
5672 6461 6.176183 ACACTTATTTGGAGACAGAATGAGG 58.824 40.000 0.00 0.00 44.54 3.86
5673 6462 7.102346 AGACACTTATTTGGAGACAGAATGAG 58.898 38.462 0.00 0.00 44.54 2.90
5674 6463 7.009179 AGACACTTATTTGGAGACAGAATGA 57.991 36.000 0.00 0.00 44.54 2.57
5675 6464 6.875726 TGAGACACTTATTTGGAGACAGAATG 59.124 38.462 0.00 0.00 44.54 2.67
5676 6465 7.009179 TGAGACACTTATTTGGAGACAGAAT 57.991 36.000 0.00 0.00 44.54 2.40
5677 6466 6.419484 TGAGACACTTATTTGGAGACAGAA 57.581 37.500 0.00 0.00 44.54 3.02
5678 6467 6.042093 AGTTGAGACACTTATTTGGAGACAGA 59.958 38.462 0.00 0.00 44.54 3.41
5679 6468 6.226787 AGTTGAGACACTTATTTGGAGACAG 58.773 40.000 0.00 0.00 44.54 3.51
5680 6469 6.174720 AGTTGAGACACTTATTTGGAGACA 57.825 37.500 0.00 0.00 39.83 3.41
5681 6470 7.497925 AAAGTTGAGACACTTATTTGGAGAC 57.502 36.000 0.00 0.00 35.87 3.36
5682 6471 8.429641 ACTAAAGTTGAGACACTTATTTGGAGA 58.570 33.333 0.00 0.00 35.87 3.71
5683 6472 8.608844 ACTAAAGTTGAGACACTTATTTGGAG 57.391 34.615 0.00 0.00 35.87 3.86
5684 6473 9.485206 GTACTAAAGTTGAGACACTTATTTGGA 57.515 33.333 0.00 0.00 35.87 3.53
5685 6474 9.490379 AGTACTAAAGTTGAGACACTTATTTGG 57.510 33.333 0.00 0.00 35.87 3.28
5690 6479 9.956720 GTTGTAGTACTAAAGTTGAGACACTTA 57.043 33.333 3.61 0.00 35.87 2.24
5691 6480 8.693625 AGTTGTAGTACTAAAGTTGAGACACTT 58.306 33.333 3.61 0.00 38.74 3.16
5692 6481 8.235359 AGTTGTAGTACTAAAGTTGAGACACT 57.765 34.615 3.61 0.00 0.00 3.55
5693 6482 8.868635 AAGTTGTAGTACTAAAGTTGAGACAC 57.131 34.615 3.61 0.00 0.00 3.67
5743 6532 5.869649 AAGGTGGAACTTTGCAATACTTT 57.130 34.783 0.00 0.00 33.55 2.66
5751 6540 4.846779 TGTATGAAAGGTGGAACTTTGC 57.153 40.909 0.00 0.00 40.55 3.68
5787 6784 4.142160 ACTGCAAGAACTGACTGCGATATA 60.142 41.667 0.00 0.00 37.43 0.86
5797 6794 4.323485 CCTGGGTATTACTGCAAGAACTGA 60.323 45.833 0.00 0.00 37.43 3.41
5801 6798 2.916934 ACCCTGGGTATTACTGCAAGAA 59.083 45.455 18.99 0.00 32.90 2.52
5823 6820 8.902540 TGATGTGTTCACTTTAACTAGTTGAT 57.097 30.769 18.56 0.00 0.00 2.57
5841 6838 0.106708 ACCGAGTTGCAGTGATGTGT 59.893 50.000 0.00 0.00 0.00 3.72
5842 6839 0.514255 CACCGAGTTGCAGTGATGTG 59.486 55.000 0.00 0.00 33.21 3.21
5881 6878 7.001674 AGATTGTCAAACACCTTACCAATGTA 58.998 34.615 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.