Multiple sequence alignment - TraesCS2B01G271500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G271500 chr2B 100.000 3098 0 0 1 3098 371564195 371561098 0.000000e+00 5722.0
1 TraesCS2B01G271500 chr2B 98.784 329 4 0 93 421 783866278 783865950 1.240000e-163 586.0
2 TraesCS2B01G271500 chr2D 95.817 2582 67 18 418 2971 299552929 299550361 0.000000e+00 4132.0
3 TraesCS2B01G271500 chr2D 82.222 675 93 12 1767 2419 47215295 47214626 9.700000e-155 556.0
4 TraesCS2B01G271500 chr2D 92.784 97 1 1 1 97 299553015 299552925 5.390000e-28 135.0
5 TraesCS2B01G271500 chr2D 91.781 73 4 1 2995 3067 299550361 299550291 1.970000e-17 100.0
6 TraesCS2B01G271500 chr2A 94.475 1973 70 21 483 2426 374722448 374720486 0.000000e+00 3003.0
7 TraesCS2B01G271500 chr2A 97.409 579 14 1 2488 3065 374718311 374717733 0.000000e+00 985.0
8 TraesCS2B01G271500 chr2A 85.714 98 6 7 1 97 374722628 374722538 2.540000e-16 97.1
9 TraesCS2B01G271500 chr2A 100.000 43 0 0 2454 2496 374719717 374719675 2.560000e-11 80.5
10 TraesCS2B01G271500 chr3A 98.795 332 4 0 93 424 580643689 580643358 2.660000e-165 592.0
11 TraesCS2B01G271500 chr4B 98.788 330 4 0 92 421 588239082 588239411 3.440000e-164 588.0
12 TraesCS2B01G271500 chr4B 98.480 329 5 0 93 421 579401576 579401248 5.760000e-162 580.0
13 TraesCS2B01G271500 chr4B 98.476 328 5 0 93 420 561747277 561747604 2.070000e-161 579.0
14 TraesCS2B01G271500 chr4B 98.176 329 6 0 90 418 561416327 561416655 2.680000e-160 575.0
15 TraesCS2B01G271500 chr7A 97.923 337 7 0 84 420 23079872 23080208 4.450000e-163 584.0
16 TraesCS2B01G271500 chr5B 98.780 328 4 0 93 420 688021986 688022313 4.450000e-163 584.0
17 TraesCS2B01G271500 chr5B 76.561 849 170 24 1257 2086 27486608 27487446 3.670000e-119 438.0
18 TraesCS2B01G271500 chr4A 97.598 333 7 1 93 425 89903904 89903573 1.250000e-158 569.0
19 TraesCS2B01G271500 chr4A 84.472 161 21 3 2029 2186 444153287 444153446 4.140000e-34 156.0
20 TraesCS2B01G271500 chr6A 81.720 651 92 13 1764 2393 92405923 92406567 4.580000e-143 518.0
21 TraesCS2B01G271500 chr3B 79.542 611 90 20 1820 2413 462053547 462054139 1.340000e-108 403.0
22 TraesCS2B01G271500 chr3D 86.747 249 30 3 1940 2186 255524323 255524076 1.090000e-69 274.0
23 TraesCS2B01G271500 chr1B 88.421 95 10 1 2041 2135 573330793 573330700 2.520000e-21 113.0
24 TraesCS2B01G271500 chr1A 93.103 58 4 0 1839 1896 520161342 520161285 5.500000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G271500 chr2B 371561098 371564195 3097 True 5722.000000 5722 100.000000 1 3098 1 chr2B.!!$R1 3097
1 TraesCS2B01G271500 chr2D 299550291 299553015 2724 True 1455.666667 4132 93.460667 1 3067 3 chr2D.!!$R2 3066
2 TraesCS2B01G271500 chr2D 47214626 47215295 669 True 556.000000 556 82.222000 1767 2419 1 chr2D.!!$R1 652
3 TraesCS2B01G271500 chr2A 374717733 374722628 4895 True 1041.400000 3003 94.399500 1 3065 4 chr2A.!!$R1 3064
4 TraesCS2B01G271500 chr5B 27486608 27487446 838 False 438.000000 438 76.561000 1257 2086 1 chr5B.!!$F1 829
5 TraesCS2B01G271500 chr6A 92405923 92406567 644 False 518.000000 518 81.720000 1764 2393 1 chr6A.!!$F1 629
6 TraesCS2B01G271500 chr3B 462053547 462054139 592 False 403.000000 403 79.542000 1820 2413 1 chr3B.!!$F1 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
296 299 0.035317 TGTGAGCATGACTGGTGGTC 59.965 55.0 0.0 0.0 44.7 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2230 2316 3.552132 TCATCTACGGGCTGCAAATTA 57.448 42.857 0.5 0.0 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 55 7.287005 TCCGTGAGAAAGTGGTATATCAATACT 59.713 37.037 0.00 0.00 38.44 2.12
53 56 7.382488 CCGTGAGAAAGTGGTATATCAATACTG 59.618 40.741 0.00 0.00 38.44 2.74
54 57 7.921214 CGTGAGAAAGTGGTATATCAATACTGT 59.079 37.037 0.00 0.00 38.44 3.55
105 108 2.362169 CCCAAATTAGGGTGCGTTTG 57.638 50.000 0.00 0.00 44.24 2.93
106 109 1.067213 CCCAAATTAGGGTGCGTTTGG 60.067 52.381 8.38 8.38 46.34 3.28
107 110 1.616374 CCAAATTAGGGTGCGTTTGGT 59.384 47.619 7.39 0.00 43.40 3.67
108 111 2.036604 CCAAATTAGGGTGCGTTTGGTT 59.963 45.455 7.39 0.00 43.40 3.67
109 112 3.056304 CAAATTAGGGTGCGTTTGGTTG 58.944 45.455 0.00 0.00 0.00 3.77
110 113 0.601057 ATTAGGGTGCGTTTGGTTGC 59.399 50.000 0.00 0.00 0.00 4.17
111 114 0.752009 TTAGGGTGCGTTTGGTTGCA 60.752 50.000 0.00 0.00 39.13 4.08
112 115 0.752009 TAGGGTGCGTTTGGTTGCAA 60.752 50.000 0.00 0.00 43.75 4.08
113 116 1.591327 GGGTGCGTTTGGTTGCAAG 60.591 57.895 0.00 0.00 43.75 4.01
114 117 1.591327 GGTGCGTTTGGTTGCAAGG 60.591 57.895 0.00 0.00 43.75 3.61
115 118 1.591327 GTGCGTTTGGTTGCAAGGG 60.591 57.895 0.00 0.00 43.75 3.95
116 119 2.661537 GCGTTTGGTTGCAAGGGC 60.662 61.111 0.00 0.00 41.68 5.19
117 120 2.354539 CGTTTGGTTGCAAGGGCG 60.355 61.111 0.00 0.00 45.35 6.13
118 121 2.028925 GTTTGGTTGCAAGGGCGG 59.971 61.111 0.00 0.00 45.35 6.13
119 122 2.443016 TTTGGTTGCAAGGGCGGT 60.443 55.556 0.00 0.00 45.35 5.68
120 123 1.152735 TTTGGTTGCAAGGGCGGTA 60.153 52.632 0.00 0.00 45.35 4.02
121 124 0.755698 TTTGGTTGCAAGGGCGGTAA 60.756 50.000 0.00 0.00 45.35 2.85
122 125 0.540830 TTGGTTGCAAGGGCGGTAAT 60.541 50.000 0.00 0.00 45.35 1.89
123 126 1.247419 TGGTTGCAAGGGCGGTAATG 61.247 55.000 0.00 0.00 45.35 1.90
124 127 0.963355 GGTTGCAAGGGCGGTAATGA 60.963 55.000 0.00 0.00 45.35 2.57
125 128 0.885196 GTTGCAAGGGCGGTAATGAA 59.115 50.000 0.00 0.00 45.35 2.57
126 129 1.476488 GTTGCAAGGGCGGTAATGAAT 59.524 47.619 0.00 0.00 45.35 2.57
127 130 1.102154 TGCAAGGGCGGTAATGAATG 58.898 50.000 0.00 0.00 45.35 2.67
128 131 0.385390 GCAAGGGCGGTAATGAATGG 59.615 55.000 0.00 0.00 0.00 3.16
129 132 1.032014 CAAGGGCGGTAATGAATGGG 58.968 55.000 0.00 0.00 0.00 4.00
130 133 0.629058 AAGGGCGGTAATGAATGGGT 59.371 50.000 0.00 0.00 0.00 4.51
131 134 0.629058 AGGGCGGTAATGAATGGGTT 59.371 50.000 0.00 0.00 0.00 4.11
132 135 0.744281 GGGCGGTAATGAATGGGTTG 59.256 55.000 0.00 0.00 0.00 3.77
133 136 0.744281 GGCGGTAATGAATGGGTTGG 59.256 55.000 0.00 0.00 0.00 3.77
134 137 0.744281 GCGGTAATGAATGGGTTGGG 59.256 55.000 0.00 0.00 0.00 4.12
135 138 1.683629 GCGGTAATGAATGGGTTGGGA 60.684 52.381 0.00 0.00 0.00 4.37
136 139 2.944129 CGGTAATGAATGGGTTGGGAT 58.056 47.619 0.00 0.00 0.00 3.85
137 140 2.884639 CGGTAATGAATGGGTTGGGATC 59.115 50.000 0.00 0.00 0.00 3.36
138 141 2.884639 GGTAATGAATGGGTTGGGATCG 59.115 50.000 0.00 0.00 0.00 3.69
139 142 2.826674 AATGAATGGGTTGGGATCGT 57.173 45.000 0.00 0.00 0.00 3.73
140 143 2.826674 ATGAATGGGTTGGGATCGTT 57.173 45.000 0.00 0.00 0.00 3.85
141 144 2.122783 TGAATGGGTTGGGATCGTTC 57.877 50.000 0.00 0.00 0.00 3.95
142 145 1.352687 TGAATGGGTTGGGATCGTTCA 59.647 47.619 0.00 0.00 35.03 3.18
143 146 2.017049 GAATGGGTTGGGATCGTTCAG 58.983 52.381 0.00 0.00 0.00 3.02
144 147 1.285280 ATGGGTTGGGATCGTTCAGA 58.715 50.000 0.00 0.00 0.00 3.27
145 148 1.060729 TGGGTTGGGATCGTTCAGAA 58.939 50.000 0.00 0.00 0.00 3.02
146 149 1.422024 TGGGTTGGGATCGTTCAGAAA 59.578 47.619 0.00 0.00 0.00 2.52
147 150 2.158593 TGGGTTGGGATCGTTCAGAAAA 60.159 45.455 0.00 0.00 0.00 2.29
148 151 3.089284 GGGTTGGGATCGTTCAGAAAAT 58.911 45.455 0.00 0.00 0.00 1.82
149 152 4.263550 TGGGTTGGGATCGTTCAGAAAATA 60.264 41.667 0.00 0.00 0.00 1.40
150 153 4.335594 GGGTTGGGATCGTTCAGAAAATAG 59.664 45.833 0.00 0.00 0.00 1.73
151 154 5.183228 GGTTGGGATCGTTCAGAAAATAGA 58.817 41.667 0.00 0.00 0.00 1.98
152 155 5.064834 GGTTGGGATCGTTCAGAAAATAGAC 59.935 44.000 0.00 0.00 0.00 2.59
153 156 5.414789 TGGGATCGTTCAGAAAATAGACA 57.585 39.130 0.00 0.00 0.00 3.41
154 157 5.989477 TGGGATCGTTCAGAAAATAGACAT 58.011 37.500 0.00 0.00 0.00 3.06
155 158 5.817296 TGGGATCGTTCAGAAAATAGACATG 59.183 40.000 0.00 0.00 0.00 3.21
156 159 5.817816 GGGATCGTTCAGAAAATAGACATGT 59.182 40.000 0.00 0.00 0.00 3.21
157 160 6.316390 GGGATCGTTCAGAAAATAGACATGTT 59.684 38.462 0.00 0.00 0.00 2.71
158 161 7.148239 GGGATCGTTCAGAAAATAGACATGTTT 60.148 37.037 0.00 0.00 0.00 2.83
159 162 7.693951 GGATCGTTCAGAAAATAGACATGTTTG 59.306 37.037 0.00 0.00 0.00 2.93
160 163 6.898041 TCGTTCAGAAAATAGACATGTTTGG 58.102 36.000 0.00 0.00 0.00 3.28
161 164 6.485313 TCGTTCAGAAAATAGACATGTTTGGT 59.515 34.615 0.00 0.00 0.00 3.67
162 165 7.012894 TCGTTCAGAAAATAGACATGTTTGGTT 59.987 33.333 0.00 0.00 0.00 3.67
163 166 8.286800 CGTTCAGAAAATAGACATGTTTGGTTA 58.713 33.333 0.00 0.00 0.00 2.85
171 174 9.855021 AAATAGACATGTTTGGTTATAAAGCAC 57.145 29.630 0.00 0.00 38.84 4.40
172 175 6.892658 AGACATGTTTGGTTATAAAGCACA 57.107 33.333 0.00 0.00 38.84 4.57
173 176 7.466746 AGACATGTTTGGTTATAAAGCACAT 57.533 32.000 0.00 0.00 38.84 3.21
174 177 7.315142 AGACATGTTTGGTTATAAAGCACATG 58.685 34.615 18.14 18.14 43.36 3.21
175 178 7.176515 AGACATGTTTGGTTATAAAGCACATGA 59.823 33.333 22.73 0.00 41.79 3.07
176 179 7.665690 ACATGTTTGGTTATAAAGCACATGAA 58.334 30.769 22.73 1.35 41.79 2.57
177 180 8.313292 ACATGTTTGGTTATAAAGCACATGAAT 58.687 29.630 22.73 8.91 41.79 2.57
178 181 8.597227 CATGTTTGGTTATAAAGCACATGAATG 58.403 33.333 16.31 0.00 41.79 2.67
179 182 7.095910 TGTTTGGTTATAAAGCACATGAATGG 58.904 34.615 0.00 0.00 38.84 3.16
180 183 6.849085 TTGGTTATAAAGCACATGAATGGT 57.151 33.333 0.00 0.00 38.84 3.55
181 184 6.849085 TGGTTATAAAGCACATGAATGGTT 57.151 33.333 0.00 0.00 41.95 3.67
182 185 6.862209 TGGTTATAAAGCACATGAATGGTTC 58.138 36.000 0.00 0.00 39.32 3.62
183 186 5.971202 GGTTATAAAGCACATGAATGGTTCG 59.029 40.000 0.00 0.00 39.32 3.95
184 187 6.183360 GGTTATAAAGCACATGAATGGTTCGA 60.183 38.462 0.00 0.00 39.32 3.71
185 188 3.837213 AAAGCACATGAATGGTTCGAG 57.163 42.857 0.00 0.00 39.32 4.04
186 189 1.089920 AGCACATGAATGGTTCGAGC 58.910 50.000 0.00 0.00 0.00 5.03
187 190 0.099436 GCACATGAATGGTTCGAGCC 59.901 55.000 11.99 11.99 0.00 4.70
188 191 1.452110 CACATGAATGGTTCGAGCCA 58.548 50.000 23.98 23.98 43.48 4.75
189 192 1.811965 CACATGAATGGTTCGAGCCAA 59.188 47.619 25.48 9.47 42.48 4.52
190 193 2.228582 CACATGAATGGTTCGAGCCAAA 59.771 45.455 25.48 13.95 42.48 3.28
191 194 2.890311 ACATGAATGGTTCGAGCCAAAA 59.110 40.909 25.48 13.59 42.48 2.44
192 195 3.320541 ACATGAATGGTTCGAGCCAAAAA 59.679 39.130 25.48 13.23 42.48 1.94
215 218 5.961396 AAGAGAATATGCCATGAAGATGC 57.039 39.130 0.00 0.00 0.00 3.91
216 219 5.244189 AGAGAATATGCCATGAAGATGCT 57.756 39.130 0.00 0.00 0.00 3.79
217 220 5.004448 AGAGAATATGCCATGAAGATGCTG 58.996 41.667 0.00 0.00 0.00 4.41
218 221 4.981812 AGAATATGCCATGAAGATGCTGA 58.018 39.130 0.00 0.00 0.00 4.26
219 222 5.382616 AGAATATGCCATGAAGATGCTGAA 58.617 37.500 0.00 0.00 0.00 3.02
220 223 5.241064 AGAATATGCCATGAAGATGCTGAAC 59.759 40.000 0.00 0.00 0.00 3.18
221 224 1.466856 TGCCATGAAGATGCTGAACC 58.533 50.000 0.00 0.00 0.00 3.62
222 225 0.379669 GCCATGAAGATGCTGAACCG 59.620 55.000 0.00 0.00 0.00 4.44
223 226 1.742761 CCATGAAGATGCTGAACCGT 58.257 50.000 0.00 0.00 0.00 4.83
224 227 2.086869 CCATGAAGATGCTGAACCGTT 58.913 47.619 0.00 0.00 0.00 4.44
225 228 2.096496 CCATGAAGATGCTGAACCGTTC 59.904 50.000 4.18 4.18 0.00 3.95
226 229 1.808411 TGAAGATGCTGAACCGTTCC 58.192 50.000 8.80 0.00 0.00 3.62
227 230 1.071542 TGAAGATGCTGAACCGTTCCA 59.928 47.619 8.80 1.07 0.00 3.53
228 231 1.464997 GAAGATGCTGAACCGTTCCAC 59.535 52.381 8.80 1.68 0.00 4.02
229 232 0.321653 AGATGCTGAACCGTTCCACC 60.322 55.000 8.80 0.00 0.00 4.61
230 233 1.303317 ATGCTGAACCGTTCCACCC 60.303 57.895 8.80 0.00 0.00 4.61
231 234 2.063015 ATGCTGAACCGTTCCACCCA 62.063 55.000 8.80 1.59 0.00 4.51
232 235 1.527380 GCTGAACCGTTCCACCCAA 60.527 57.895 8.80 0.00 0.00 4.12
233 236 1.792118 GCTGAACCGTTCCACCCAAC 61.792 60.000 8.80 0.00 0.00 3.77
234 237 1.152922 TGAACCGTTCCACCCAACC 60.153 57.895 8.80 0.00 0.00 3.77
235 238 1.152922 GAACCGTTCCACCCAACCA 60.153 57.895 0.00 0.00 0.00 3.67
236 239 0.752376 GAACCGTTCCACCCAACCAA 60.752 55.000 0.00 0.00 0.00 3.67
237 240 0.324460 AACCGTTCCACCCAACCAAA 60.324 50.000 0.00 0.00 0.00 3.28
238 241 0.105913 ACCGTTCCACCCAACCAAAT 60.106 50.000 0.00 0.00 0.00 2.32
239 242 0.601057 CCGTTCCACCCAACCAAATC 59.399 55.000 0.00 0.00 0.00 2.17
240 243 0.239879 CGTTCCACCCAACCAAATCG 59.760 55.000 0.00 0.00 0.00 3.34
241 244 0.601057 GTTCCACCCAACCAAATCGG 59.399 55.000 0.00 0.00 42.50 4.18
254 257 3.694734 CCAAATCGGTCGAATCAAATGG 58.305 45.455 0.00 0.00 0.00 3.16
255 258 3.108144 CAAATCGGTCGAATCAAATGGC 58.892 45.455 0.00 0.00 0.00 4.40
256 259 1.308998 ATCGGTCGAATCAAATGGCC 58.691 50.000 0.00 0.00 0.00 5.36
257 260 1.087202 TCGGTCGAATCAAATGGCCG 61.087 55.000 0.00 0.00 39.13 6.13
258 261 1.064134 GGTCGAATCAAATGGCCGC 59.936 57.895 0.00 0.00 0.00 6.53
259 262 1.064134 GTCGAATCAAATGGCCGCC 59.936 57.895 1.04 1.04 0.00 6.13
260 263 2.118404 TCGAATCAAATGGCCGCCC 61.118 57.895 7.03 0.00 0.00 6.13
261 264 2.120909 CGAATCAAATGGCCGCCCT 61.121 57.895 7.03 0.00 0.00 5.19
262 265 1.666209 CGAATCAAATGGCCGCCCTT 61.666 55.000 7.03 0.00 0.00 3.95
263 266 0.536724 GAATCAAATGGCCGCCCTTT 59.463 50.000 7.03 6.92 0.00 3.11
264 267 0.249955 AATCAAATGGCCGCCCTTTG 59.750 50.000 26.02 26.02 33.89 2.77
265 268 2.242797 ATCAAATGGCCGCCCTTTGC 62.243 55.000 26.75 0.00 33.24 3.68
266 269 2.921972 AAATGGCCGCCCTTTGCA 60.922 55.556 11.46 0.00 41.33 4.08
267 270 2.292559 AAATGGCCGCCCTTTGCAT 61.293 52.632 11.46 0.00 41.33 3.96
268 271 2.524951 AAATGGCCGCCCTTTGCATG 62.525 55.000 11.46 0.00 41.33 4.06
271 274 4.151582 GCCGCCCTTTGCATGCAT 62.152 61.111 23.37 0.00 41.33 3.96
272 275 2.202824 CCGCCCTTTGCATGCATG 60.203 61.111 23.37 22.70 41.33 4.06
273 276 2.712944 CCGCCCTTTGCATGCATGA 61.713 57.895 30.64 12.55 41.33 3.07
274 277 1.517694 CGCCCTTTGCATGCATGAC 60.518 57.895 30.64 20.41 41.33 3.06
275 278 1.895238 GCCCTTTGCATGCATGACT 59.105 52.632 30.64 0.00 40.77 3.41
276 279 1.105457 GCCCTTTGCATGCATGACTA 58.895 50.000 30.64 14.85 40.77 2.59
277 280 1.684983 GCCCTTTGCATGCATGACTAT 59.315 47.619 30.64 0.00 40.77 2.12
278 281 2.545113 GCCCTTTGCATGCATGACTATG 60.545 50.000 30.64 17.48 40.77 2.23
279 282 2.691526 CCCTTTGCATGCATGACTATGT 59.308 45.455 30.64 0.00 36.65 2.29
280 283 3.490249 CCCTTTGCATGCATGACTATGTG 60.490 47.826 30.64 10.85 36.65 3.21
281 284 3.379057 CCTTTGCATGCATGACTATGTGA 59.621 43.478 30.64 0.00 36.65 3.58
282 285 4.497507 CCTTTGCATGCATGACTATGTGAG 60.498 45.833 30.64 13.72 36.65 3.51
283 286 1.944709 TGCATGCATGACTATGTGAGC 59.055 47.619 30.64 10.98 36.65 4.26
284 287 1.944709 GCATGCATGACTATGTGAGCA 59.055 47.619 30.64 0.00 36.65 4.26
285 288 2.552743 GCATGCATGACTATGTGAGCAT 59.447 45.455 30.64 0.00 42.82 3.79
287 290 3.547054 TGCATGACTATGTGAGCATGA 57.453 42.857 0.00 0.00 39.82 3.07
288 291 3.200483 TGCATGACTATGTGAGCATGAC 58.800 45.455 0.00 0.00 39.82 3.06
289 292 3.118519 TGCATGACTATGTGAGCATGACT 60.119 43.478 0.00 0.00 39.82 3.41
290 293 3.247886 GCATGACTATGTGAGCATGACTG 59.752 47.826 0.00 0.00 39.82 3.51
291 294 3.531934 TGACTATGTGAGCATGACTGG 57.468 47.619 0.00 0.00 36.58 4.00
292 295 2.833943 TGACTATGTGAGCATGACTGGT 59.166 45.455 0.00 0.00 36.58 4.00
293 296 3.193263 GACTATGTGAGCATGACTGGTG 58.807 50.000 0.00 0.00 36.58 4.17
294 297 2.093288 ACTATGTGAGCATGACTGGTGG 60.093 50.000 0.00 0.00 36.58 4.61
295 298 0.694771 ATGTGAGCATGACTGGTGGT 59.305 50.000 0.00 0.00 33.37 4.16
296 299 0.035317 TGTGAGCATGACTGGTGGTC 59.965 55.000 0.00 0.00 44.70 4.02
297 300 0.674895 GTGAGCATGACTGGTGGTCC 60.675 60.000 0.00 0.00 43.89 4.46
298 301 1.078143 GAGCATGACTGGTGGTCCC 60.078 63.158 0.00 0.00 43.89 4.46
299 302 2.436646 GCATGACTGGTGGTCCCG 60.437 66.667 0.00 0.00 43.89 5.14
300 303 3.068881 CATGACTGGTGGTCCCGT 58.931 61.111 0.00 0.00 43.89 5.28
301 304 1.079127 CATGACTGGTGGTCCCGTC 60.079 63.158 0.00 2.67 44.58 4.79
302 305 2.291043 ATGACTGGTGGTCCCGTCC 61.291 63.158 6.41 0.00 43.99 4.79
303 306 2.603776 GACTGGTGGTCCCGTCCT 60.604 66.667 0.00 0.00 40.51 3.85
304 307 1.304713 GACTGGTGGTCCCGTCCTA 60.305 63.158 0.00 0.00 40.51 2.94
305 308 0.901580 GACTGGTGGTCCCGTCCTAA 60.902 60.000 0.00 0.00 40.51 2.69
306 309 0.472352 ACTGGTGGTCCCGTCCTAAA 60.472 55.000 0.00 0.00 35.15 1.85
307 310 0.909623 CTGGTGGTCCCGTCCTAAAT 59.090 55.000 0.00 0.00 35.15 1.40
308 311 2.112998 CTGGTGGTCCCGTCCTAAATA 58.887 52.381 0.00 0.00 35.15 1.40
309 312 2.502538 CTGGTGGTCCCGTCCTAAATAA 59.497 50.000 0.00 0.00 35.15 1.40
310 313 3.116959 TGGTGGTCCCGTCCTAAATAAT 58.883 45.455 0.00 0.00 35.15 1.28
311 314 3.524380 TGGTGGTCCCGTCCTAAATAATT 59.476 43.478 0.00 0.00 35.15 1.40
312 315 4.720773 TGGTGGTCCCGTCCTAAATAATTA 59.279 41.667 0.00 0.00 35.15 1.40
313 316 5.163280 TGGTGGTCCCGTCCTAAATAATTAG 60.163 44.000 0.00 0.00 36.05 1.73
314 317 4.753610 GTGGTCCCGTCCTAAATAATTAGC 59.246 45.833 0.00 0.00 37.74 3.09
315 318 4.657039 TGGTCCCGTCCTAAATAATTAGCT 59.343 41.667 0.00 0.00 37.74 3.32
316 319 5.221581 TGGTCCCGTCCTAAATAATTAGCTC 60.222 44.000 0.00 0.00 37.74 4.09
317 320 5.221581 GGTCCCGTCCTAAATAATTAGCTCA 60.222 44.000 0.00 0.00 37.74 4.26
318 321 5.695363 GTCCCGTCCTAAATAATTAGCTCAC 59.305 44.000 0.00 0.00 37.74 3.51
319 322 4.995487 CCCGTCCTAAATAATTAGCTCACC 59.005 45.833 0.00 0.00 37.74 4.02
320 323 5.454187 CCCGTCCTAAATAATTAGCTCACCA 60.454 44.000 0.00 0.00 37.74 4.17
321 324 5.465724 CCGTCCTAAATAATTAGCTCACCAC 59.534 44.000 0.00 0.00 37.74 4.16
322 325 6.281405 CGTCCTAAATAATTAGCTCACCACT 58.719 40.000 0.00 0.00 37.74 4.00
323 326 6.761714 CGTCCTAAATAATTAGCTCACCACTT 59.238 38.462 0.00 0.00 37.74 3.16
324 327 7.924412 CGTCCTAAATAATTAGCTCACCACTTA 59.076 37.037 0.00 0.00 37.74 2.24
325 328 9.780186 GTCCTAAATAATTAGCTCACCACTTAT 57.220 33.333 0.00 0.00 37.74 1.73
332 335 7.736447 AATTAGCTCACCACTTATATTCAGC 57.264 36.000 0.00 0.00 0.00 4.26
333 336 4.078639 AGCTCACCACTTATATTCAGCC 57.921 45.455 0.00 0.00 0.00 4.85
334 337 3.455910 AGCTCACCACTTATATTCAGCCA 59.544 43.478 0.00 0.00 0.00 4.75
335 338 4.080356 AGCTCACCACTTATATTCAGCCAA 60.080 41.667 0.00 0.00 0.00 4.52
336 339 4.640201 GCTCACCACTTATATTCAGCCAAA 59.360 41.667 0.00 0.00 0.00 3.28
337 340 5.449177 GCTCACCACTTATATTCAGCCAAAC 60.449 44.000 0.00 0.00 0.00 2.93
338 341 5.565509 TCACCACTTATATTCAGCCAAACA 58.434 37.500 0.00 0.00 0.00 2.83
339 342 5.414454 TCACCACTTATATTCAGCCAAACAC 59.586 40.000 0.00 0.00 0.00 3.32
340 343 5.182950 CACCACTTATATTCAGCCAAACACA 59.817 40.000 0.00 0.00 0.00 3.72
341 344 5.951747 ACCACTTATATTCAGCCAAACACAT 59.048 36.000 0.00 0.00 0.00 3.21
342 345 6.127647 ACCACTTATATTCAGCCAAACACATG 60.128 38.462 0.00 0.00 0.00 3.21
343 346 6.095300 CCACTTATATTCAGCCAAACACATGA 59.905 38.462 0.00 0.00 0.00 3.07
344 347 7.362834 CCACTTATATTCAGCCAAACACATGAA 60.363 37.037 0.00 0.00 36.22 2.57
345 348 8.192774 CACTTATATTCAGCCAAACACATGAAT 58.807 33.333 0.00 4.83 43.08 2.57
346 349 8.752187 ACTTATATTCAGCCAAACACATGAATT 58.248 29.630 0.00 0.00 41.38 2.17
347 350 8.929827 TTATATTCAGCCAAACACATGAATTG 57.070 30.769 0.00 1.27 41.38 2.32
348 351 4.933505 TTCAGCCAAACACATGAATTGA 57.066 36.364 0.00 0.00 0.00 2.57
349 352 4.933505 TCAGCCAAACACATGAATTGAA 57.066 36.364 0.00 0.00 0.00 2.69
350 353 5.471556 TCAGCCAAACACATGAATTGAAT 57.528 34.783 0.00 0.00 0.00 2.57
351 354 5.231702 TCAGCCAAACACATGAATTGAATG 58.768 37.500 0.00 4.33 0.00 2.67
352 355 4.390603 CAGCCAAACACATGAATTGAATGG 59.609 41.667 0.00 3.30 0.00 3.16
353 356 4.040706 AGCCAAACACATGAATTGAATGGT 59.959 37.500 0.00 0.00 0.00 3.55
354 357 4.756135 GCCAAACACATGAATTGAATGGTT 59.244 37.500 0.00 0.00 0.00 3.67
355 358 5.106987 GCCAAACACATGAATTGAATGGTTC 60.107 40.000 0.00 0.00 0.00 3.62
356 359 5.990386 CCAAACACATGAATTGAATGGTTCA 59.010 36.000 0.00 0.00 38.57 3.18
385 388 4.365514 AAAAATTGAATGGTCCCAACCC 57.634 40.909 0.00 0.00 45.83 4.11
386 389 2.711895 AATTGAATGGTCCCAACCCA 57.288 45.000 0.00 0.00 45.83 4.51
387 390 2.946791 ATTGAATGGTCCCAACCCAT 57.053 45.000 0.00 0.00 45.83 4.00
393 396 2.818751 TGGTCCCAACCCATTCATAC 57.181 50.000 0.00 0.00 45.83 2.39
394 397 1.065053 TGGTCCCAACCCATTCATACG 60.065 52.381 0.00 0.00 45.83 3.06
395 398 1.210967 GGTCCCAACCCATTCATACGA 59.789 52.381 0.00 0.00 39.93 3.43
396 399 2.285977 GTCCCAACCCATTCATACGAC 58.714 52.381 0.00 0.00 0.00 4.34
397 400 1.909986 TCCCAACCCATTCATACGACA 59.090 47.619 0.00 0.00 0.00 4.35
398 401 2.014128 CCCAACCCATTCATACGACAC 58.986 52.381 0.00 0.00 0.00 3.67
399 402 2.616765 CCCAACCCATTCATACGACACA 60.617 50.000 0.00 0.00 0.00 3.72
400 403 3.278574 CCAACCCATTCATACGACACAT 58.721 45.455 0.00 0.00 0.00 3.21
401 404 3.694072 CCAACCCATTCATACGACACATT 59.306 43.478 0.00 0.00 0.00 2.71
402 405 4.201910 CCAACCCATTCATACGACACATTC 60.202 45.833 0.00 0.00 0.00 2.67
403 406 4.214986 ACCCATTCATACGACACATTCA 57.785 40.909 0.00 0.00 0.00 2.57
404 407 4.584874 ACCCATTCATACGACACATTCAA 58.415 39.130 0.00 0.00 0.00 2.69
405 408 4.394920 ACCCATTCATACGACACATTCAAC 59.605 41.667 0.00 0.00 0.00 3.18
406 409 4.201910 CCCATTCATACGACACATTCAACC 60.202 45.833 0.00 0.00 0.00 3.77
407 410 4.394610 CCATTCATACGACACATTCAACCA 59.605 41.667 0.00 0.00 0.00 3.67
408 411 5.106357 CCATTCATACGACACATTCAACCAA 60.106 40.000 0.00 0.00 0.00 3.67
409 412 6.377780 CATTCATACGACACATTCAACCAAA 58.622 36.000 0.00 0.00 0.00 3.28
410 413 5.351233 TCATACGACACATTCAACCAAAC 57.649 39.130 0.00 0.00 0.00 2.93
411 414 2.748461 ACGACACATTCAACCAAACG 57.252 45.000 0.00 0.00 0.00 3.60
412 415 1.268335 ACGACACATTCAACCAAACGC 60.268 47.619 0.00 0.00 0.00 4.84
413 416 1.268285 CGACACATTCAACCAAACGCA 60.268 47.619 0.00 0.00 0.00 5.24
414 417 2.604373 CGACACATTCAACCAAACGCAT 60.604 45.455 0.00 0.00 0.00 4.73
415 418 2.979813 GACACATTCAACCAAACGCATC 59.020 45.455 0.00 0.00 0.00 3.91
416 419 2.288152 ACACATTCAACCAAACGCATCC 60.288 45.455 0.00 0.00 0.00 3.51
417 420 2.030007 CACATTCAACCAAACGCATCCT 60.030 45.455 0.00 0.00 0.00 3.24
418 421 2.627699 ACATTCAACCAAACGCATCCTT 59.372 40.909 0.00 0.00 0.00 3.36
419 422 3.823873 ACATTCAACCAAACGCATCCTTA 59.176 39.130 0.00 0.00 0.00 2.69
420 423 4.082787 ACATTCAACCAAACGCATCCTTAG 60.083 41.667 0.00 0.00 0.00 2.18
421 424 2.432444 TCAACCAAACGCATCCTTAGG 58.568 47.619 0.00 0.00 0.00 2.69
450 453 1.045407 CGGATCCGATTCCCCACTAA 58.955 55.000 30.62 0.00 42.83 2.24
465 468 0.896923 ACTAACACACCGCCCGATTA 59.103 50.000 0.00 0.00 0.00 1.75
466 469 1.275856 ACTAACACACCGCCCGATTAA 59.724 47.619 0.00 0.00 0.00 1.40
467 470 1.662122 CTAACACACCGCCCGATTAAC 59.338 52.381 0.00 0.00 0.00 2.01
468 471 0.250381 AACACACCGCCCGATTAACA 60.250 50.000 0.00 0.00 0.00 2.41
471 474 1.135803 CACACCGCCCGATTAACAAAG 60.136 52.381 0.00 0.00 0.00 2.77
563 600 2.280389 CCGACAGCCATCCATCCG 60.280 66.667 0.00 0.00 0.00 4.18
564 601 2.969238 CGACAGCCATCCATCCGC 60.969 66.667 0.00 0.00 0.00 5.54
582 619 2.437359 CTTCCTCGCCCTGCCTTG 60.437 66.667 0.00 0.00 0.00 3.61
593 630 1.538687 CCTGCCTTGCCCTCCAAAAG 61.539 60.000 0.00 0.00 31.94 2.27
599 636 3.496692 GCCTTGCCCTCCAAAAGAAAAAT 60.497 43.478 0.00 0.00 31.94 1.82
600 637 4.262851 GCCTTGCCCTCCAAAAGAAAAATA 60.263 41.667 0.00 0.00 31.94 1.40
601 638 5.482006 CCTTGCCCTCCAAAAGAAAAATAG 58.518 41.667 0.00 0.00 31.94 1.73
602 639 5.012046 CCTTGCCCTCCAAAAGAAAAATAGT 59.988 40.000 0.00 0.00 31.94 2.12
603 640 6.210584 CCTTGCCCTCCAAAAGAAAAATAGTA 59.789 38.462 0.00 0.00 31.94 1.82
711 762 1.772836 ATTCATTCCTGCCTTGCCTC 58.227 50.000 0.00 0.00 0.00 4.70
714 765 1.932757 ATTCCTGCCTTGCCTCCCT 60.933 57.895 0.00 0.00 0.00 4.20
715 766 0.624500 ATTCCTGCCTTGCCTCCCTA 60.625 55.000 0.00 0.00 0.00 3.53
794 846 4.020662 AGACAAAGAGAAGGAGAAAGCGAT 60.021 41.667 0.00 0.00 0.00 4.58
875 927 2.171659 GCCTTCCTTCCTTCCTTCCTAG 59.828 54.545 0.00 0.00 0.00 3.02
877 929 1.486211 TCCTTCCTTCCTTCCTAGCG 58.514 55.000 0.00 0.00 0.00 4.26
899 960 4.283722 CGTAGCATTCCCTATAGAAACCCT 59.716 45.833 0.00 0.00 0.00 4.34
969 1030 4.260784 CGATTGTGATTTCCCCTCGATTTC 60.261 45.833 0.00 0.00 0.00 2.17
982 1043 1.135527 TCGATTTCGTGCGGGATTAGT 59.864 47.619 0.00 0.00 40.80 2.24
1211 1278 1.964891 CGGAGGACCTCGCGCTATA 60.965 63.158 15.46 0.00 0.00 1.31
1951 2031 2.744709 GCCACCCGCACACGTATT 60.745 61.111 0.00 0.00 37.70 1.89
2122 2202 0.249615 GCGGTGCTCTGCATCATAGA 60.250 55.000 14.56 0.00 40.05 1.98
2162 2242 3.585862 TCTGACGCCTGATTTCTGTAAC 58.414 45.455 0.00 0.00 0.00 2.50
2186 2270 5.629849 CGTTTCAAGGTTCTAGACACTACTG 59.370 44.000 0.00 0.00 0.00 2.74
2227 2313 4.731720 CCATGCGTGTATTTCAATCACAA 58.268 39.130 4.96 0.00 33.04 3.33
2228 2314 5.159925 CCATGCGTGTATTTCAATCACAAA 58.840 37.500 4.96 0.00 33.04 2.83
2229 2315 5.632764 CCATGCGTGTATTTCAATCACAAAA 59.367 36.000 4.96 0.00 33.04 2.44
2230 2316 6.310956 CCATGCGTGTATTTCAATCACAAAAT 59.689 34.615 4.96 0.00 33.04 1.82
2325 2426 4.319333 GCAACATGACTGAAGAACACTGAG 60.319 45.833 0.00 0.00 0.00 3.35
2331 2432 5.833082 TGACTGAAGAACACTGAGTACTTC 58.167 41.667 14.72 14.72 37.87 3.01
2396 2498 4.155449 GCATGTTGCTTCGTTTAATTCGA 58.845 39.130 0.00 0.26 40.96 3.71
2399 2501 5.013861 TGTTGCTTCGTTTAATTCGAGAC 57.986 39.130 4.09 2.47 38.52 3.36
2433 3017 4.461081 ACTCGATTAGTCTTGTGCTCTCTT 59.539 41.667 0.00 0.00 30.33 2.85
2437 3021 5.231779 CGATTAGTCTTGTGCTCTCTTGATG 59.768 44.000 0.00 0.00 0.00 3.07
2671 4887 2.159517 GCTTTTGCAGGTCTATCCGTTG 60.160 50.000 0.00 0.00 46.58 4.10
2718 4934 2.029290 AGCAGTGTCGTTATTCTCCGTT 60.029 45.455 0.00 0.00 0.00 4.44
2749 4965 0.588252 CGGTTCAGACTGGTGCTTTG 59.412 55.000 1.81 0.00 0.00 2.77
2788 5004 3.119424 CGTTCTTCTCCTCCTGGTACTTC 60.119 52.174 0.00 0.00 34.23 3.01
2921 5137 4.737765 GCTGTTCTGTTGAAATGCGTAAAA 59.262 37.500 0.00 0.00 33.52 1.52
2957 5173 2.945668 GGTGTTCTGTTCAGCTGAAACT 59.054 45.455 29.99 0.00 36.91 2.66
3010 5226 6.597672 CAGCTTGTGTACATAACCAAGGAATA 59.402 38.462 19.70 0.00 37.10 1.75
3067 5283 1.873591 GCACCGTGACTCTCATTGTTT 59.126 47.619 1.65 0.00 0.00 2.83
3068 5284 2.290641 GCACCGTGACTCTCATTGTTTT 59.709 45.455 1.65 0.00 0.00 2.43
3069 5285 3.607078 GCACCGTGACTCTCATTGTTTTC 60.607 47.826 1.65 0.00 0.00 2.29
3070 5286 3.809832 CACCGTGACTCTCATTGTTTTCT 59.190 43.478 0.00 0.00 0.00 2.52
3071 5287 4.273480 CACCGTGACTCTCATTGTTTTCTT 59.727 41.667 0.00 0.00 0.00 2.52
3072 5288 5.465390 CACCGTGACTCTCATTGTTTTCTTA 59.535 40.000 0.00 0.00 0.00 2.10
3073 5289 6.147821 CACCGTGACTCTCATTGTTTTCTTAT 59.852 38.462 0.00 0.00 0.00 1.73
3074 5290 7.330946 CACCGTGACTCTCATTGTTTTCTTATA 59.669 37.037 0.00 0.00 0.00 0.98
3075 5291 7.876068 ACCGTGACTCTCATTGTTTTCTTATAA 59.124 33.333 0.00 0.00 0.00 0.98
3076 5292 8.383619 CCGTGACTCTCATTGTTTTCTTATAAG 58.616 37.037 6.11 6.11 0.00 1.73
3077 5293 9.140286 CGTGACTCTCATTGTTTTCTTATAAGA 57.860 33.333 11.24 11.24 0.00 2.10
3083 5299 9.231297 TCTCATTGTTTTCTTATAAGAACAGGG 57.769 33.333 24.34 16.28 44.18 4.45
3084 5300 9.231297 CTCATTGTTTTCTTATAAGAACAGGGA 57.769 33.333 24.34 18.69 44.18 4.20
3085 5301 9.231297 TCATTGTTTTCTTATAAGAACAGGGAG 57.769 33.333 24.34 14.55 44.18 4.30
3086 5302 7.448748 TTGTTTTCTTATAAGAACAGGGAGC 57.551 36.000 24.34 13.54 44.18 4.70
3087 5303 6.779860 TGTTTTCTTATAAGAACAGGGAGCT 58.220 36.000 24.34 0.00 44.18 4.09
3088 5304 7.913789 TGTTTTCTTATAAGAACAGGGAGCTA 58.086 34.615 24.34 6.85 44.18 3.32
3089 5305 7.822822 TGTTTTCTTATAAGAACAGGGAGCTAC 59.177 37.037 24.34 12.57 44.18 3.58
3090 5306 6.481434 TTCTTATAAGAACAGGGAGCTACC 57.519 41.667 21.46 6.98 39.95 3.18
3091 5307 5.778542 TCTTATAAGAACAGGGAGCTACCT 58.221 41.667 13.46 13.46 34.78 3.08
3092 5308 5.834204 TCTTATAAGAACAGGGAGCTACCTC 59.166 44.000 17.16 4.17 33.08 3.85
3093 5309 7.145934 TCTTATAAGAACAGGGAGCTACCTCC 61.146 46.154 17.16 7.54 43.48 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 7.667557 TCAGGCAAGTACAGTATTGATATACC 58.332 38.462 0.00 0.00 37.87 2.73
52 55 2.548057 CGCTTTTCTTCAGGCAAGTACA 59.452 45.455 0.00 0.00 33.27 2.90
53 56 2.806244 TCGCTTTTCTTCAGGCAAGTAC 59.194 45.455 0.00 0.00 33.27 2.73
54 57 3.120321 TCGCTTTTCTTCAGGCAAGTA 57.880 42.857 0.00 0.00 33.27 2.24
55 58 1.967319 TCGCTTTTCTTCAGGCAAGT 58.033 45.000 0.00 0.00 33.27 3.16
56 59 3.045688 GTTTCGCTTTTCTTCAGGCAAG 58.954 45.455 0.00 0.00 0.00 4.01
97 100 1.591327 CCCTTGCAACCAAACGCAC 60.591 57.895 0.00 0.00 38.00 5.34
98 101 2.811101 CCCTTGCAACCAAACGCA 59.189 55.556 0.00 0.00 36.05 5.24
99 102 2.661537 GCCCTTGCAACCAAACGC 60.662 61.111 0.00 0.00 37.47 4.84
100 103 2.354539 CGCCCTTGCAACCAAACG 60.355 61.111 0.00 0.00 37.32 3.60
101 104 1.457009 TACCGCCCTTGCAACCAAAC 61.457 55.000 0.00 0.00 37.32 2.93
102 105 0.755698 TTACCGCCCTTGCAACCAAA 60.756 50.000 0.00 0.00 37.32 3.28
103 106 0.540830 ATTACCGCCCTTGCAACCAA 60.541 50.000 0.00 0.00 37.32 3.67
104 107 1.075836 ATTACCGCCCTTGCAACCA 59.924 52.632 0.00 0.00 37.32 3.67
105 108 0.963355 TCATTACCGCCCTTGCAACC 60.963 55.000 0.00 0.00 37.32 3.77
106 109 0.885196 TTCATTACCGCCCTTGCAAC 59.115 50.000 0.00 0.00 37.32 4.17
107 110 1.476085 CATTCATTACCGCCCTTGCAA 59.524 47.619 0.00 0.00 37.32 4.08
108 111 1.102154 CATTCATTACCGCCCTTGCA 58.898 50.000 0.00 0.00 37.32 4.08
109 112 0.385390 CCATTCATTACCGCCCTTGC 59.615 55.000 0.00 0.00 0.00 4.01
110 113 1.032014 CCCATTCATTACCGCCCTTG 58.968 55.000 0.00 0.00 0.00 3.61
111 114 0.629058 ACCCATTCATTACCGCCCTT 59.371 50.000 0.00 0.00 0.00 3.95
112 115 0.629058 AACCCATTCATTACCGCCCT 59.371 50.000 0.00 0.00 0.00 5.19
113 116 0.744281 CAACCCATTCATTACCGCCC 59.256 55.000 0.00 0.00 0.00 6.13
114 117 0.744281 CCAACCCATTCATTACCGCC 59.256 55.000 0.00 0.00 0.00 6.13
115 118 0.744281 CCCAACCCATTCATTACCGC 59.256 55.000 0.00 0.00 0.00 5.68
116 119 2.428544 TCCCAACCCATTCATTACCG 57.571 50.000 0.00 0.00 0.00 4.02
117 120 2.884639 CGATCCCAACCCATTCATTACC 59.115 50.000 0.00 0.00 0.00 2.85
118 121 3.551846 ACGATCCCAACCCATTCATTAC 58.448 45.455 0.00 0.00 0.00 1.89
119 122 3.943671 ACGATCCCAACCCATTCATTA 57.056 42.857 0.00 0.00 0.00 1.90
120 123 2.826674 ACGATCCCAACCCATTCATT 57.173 45.000 0.00 0.00 0.00 2.57
121 124 2.025416 TGAACGATCCCAACCCATTCAT 60.025 45.455 0.00 0.00 0.00 2.57
122 125 1.352687 TGAACGATCCCAACCCATTCA 59.647 47.619 0.00 0.00 0.00 2.57
123 126 2.017049 CTGAACGATCCCAACCCATTC 58.983 52.381 0.00 0.00 0.00 2.67
124 127 1.633432 TCTGAACGATCCCAACCCATT 59.367 47.619 0.00 0.00 0.00 3.16
125 128 1.285280 TCTGAACGATCCCAACCCAT 58.715 50.000 0.00 0.00 0.00 4.00
126 129 1.060729 TTCTGAACGATCCCAACCCA 58.939 50.000 0.00 0.00 0.00 4.51
127 130 2.194201 TTTCTGAACGATCCCAACCC 57.806 50.000 0.00 0.00 0.00 4.11
128 131 5.064834 GTCTATTTTCTGAACGATCCCAACC 59.935 44.000 0.00 0.00 0.00 3.77
129 132 5.642063 TGTCTATTTTCTGAACGATCCCAAC 59.358 40.000 0.00 0.00 0.00 3.77
130 133 5.800296 TGTCTATTTTCTGAACGATCCCAA 58.200 37.500 0.00 0.00 0.00 4.12
131 134 5.414789 TGTCTATTTTCTGAACGATCCCA 57.585 39.130 0.00 0.00 0.00 4.37
132 135 5.817816 ACATGTCTATTTTCTGAACGATCCC 59.182 40.000 0.00 0.00 0.00 3.85
133 136 6.910536 ACATGTCTATTTTCTGAACGATCC 57.089 37.500 0.00 0.00 0.00 3.36
134 137 7.693951 CCAAACATGTCTATTTTCTGAACGATC 59.306 37.037 0.00 0.00 0.00 3.69
135 138 7.174946 ACCAAACATGTCTATTTTCTGAACGAT 59.825 33.333 0.00 0.00 0.00 3.73
136 139 6.485313 ACCAAACATGTCTATTTTCTGAACGA 59.515 34.615 0.00 0.00 0.00 3.85
137 140 6.668323 ACCAAACATGTCTATTTTCTGAACG 58.332 36.000 0.00 0.00 0.00 3.95
145 148 9.855021 GTGCTTTATAACCAAACATGTCTATTT 57.145 29.630 0.00 0.00 0.00 1.40
146 149 9.019656 TGTGCTTTATAACCAAACATGTCTATT 57.980 29.630 0.00 0.00 0.00 1.73
147 150 8.574251 TGTGCTTTATAACCAAACATGTCTAT 57.426 30.769 0.00 0.00 0.00 1.98
148 151 7.987750 TGTGCTTTATAACCAAACATGTCTA 57.012 32.000 0.00 0.00 0.00 2.59
149 152 6.892658 TGTGCTTTATAACCAAACATGTCT 57.107 33.333 0.00 0.00 0.00 3.41
150 153 7.312154 TCATGTGCTTTATAACCAAACATGTC 58.688 34.615 19.24 0.00 42.41 3.06
151 154 7.225784 TCATGTGCTTTATAACCAAACATGT 57.774 32.000 19.24 0.00 42.41 3.21
152 155 8.597227 CATTCATGTGCTTTATAACCAAACATG 58.403 33.333 16.42 16.42 42.90 3.21
153 156 7.765360 CCATTCATGTGCTTTATAACCAAACAT 59.235 33.333 0.00 0.00 0.00 2.71
154 157 7.095910 CCATTCATGTGCTTTATAACCAAACA 58.904 34.615 0.00 0.00 0.00 2.83
155 158 7.096551 ACCATTCATGTGCTTTATAACCAAAC 58.903 34.615 0.00 0.00 0.00 2.93
156 159 7.238486 ACCATTCATGTGCTTTATAACCAAA 57.762 32.000 0.00 0.00 0.00 3.28
157 160 6.849085 ACCATTCATGTGCTTTATAACCAA 57.151 33.333 0.00 0.00 0.00 3.67
158 161 6.404184 CGAACCATTCATGTGCTTTATAACCA 60.404 38.462 0.00 0.00 0.00 3.67
159 162 5.971202 CGAACCATTCATGTGCTTTATAACC 59.029 40.000 0.00 0.00 0.00 2.85
160 163 6.781138 TCGAACCATTCATGTGCTTTATAAC 58.219 36.000 0.00 0.00 0.00 1.89
161 164 6.458206 GCTCGAACCATTCATGTGCTTTATAA 60.458 38.462 0.00 0.00 0.00 0.98
162 165 5.007626 GCTCGAACCATTCATGTGCTTTATA 59.992 40.000 0.00 0.00 0.00 0.98
163 166 4.201950 GCTCGAACCATTCATGTGCTTTAT 60.202 41.667 0.00 0.00 0.00 1.40
164 167 3.126858 GCTCGAACCATTCATGTGCTTTA 59.873 43.478 0.00 0.00 0.00 1.85
165 168 2.095059 GCTCGAACCATTCATGTGCTTT 60.095 45.455 0.00 0.00 0.00 3.51
166 169 1.470098 GCTCGAACCATTCATGTGCTT 59.530 47.619 0.00 0.00 0.00 3.91
167 170 1.089920 GCTCGAACCATTCATGTGCT 58.910 50.000 0.00 0.00 0.00 4.40
168 171 0.099436 GGCTCGAACCATTCATGTGC 59.901 55.000 0.00 0.00 0.00 4.57
169 172 1.452110 TGGCTCGAACCATTCATGTG 58.548 50.000 2.67 0.00 33.75 3.21
170 173 2.198827 TTGGCTCGAACCATTCATGT 57.801 45.000 8.68 0.00 40.13 3.21
171 174 3.574284 TTTTGGCTCGAACCATTCATG 57.426 42.857 8.68 0.00 40.13 3.07
190 193 7.069578 AGCATCTTCATGGCATATTCTCTTTTT 59.930 33.333 0.00 0.00 0.00 1.94
191 194 6.550108 AGCATCTTCATGGCATATTCTCTTTT 59.450 34.615 0.00 0.00 0.00 2.27
192 195 6.016192 CAGCATCTTCATGGCATATTCTCTTT 60.016 38.462 0.00 0.00 0.00 2.52
193 196 5.473846 CAGCATCTTCATGGCATATTCTCTT 59.526 40.000 0.00 0.00 0.00 2.85
194 197 5.004448 CAGCATCTTCATGGCATATTCTCT 58.996 41.667 0.00 0.00 0.00 3.10
195 198 5.001874 TCAGCATCTTCATGGCATATTCTC 58.998 41.667 0.00 0.00 0.00 2.87
196 199 4.981812 TCAGCATCTTCATGGCATATTCT 58.018 39.130 0.00 0.00 0.00 2.40
197 200 5.458891 GTTCAGCATCTTCATGGCATATTC 58.541 41.667 0.00 0.00 0.00 1.75
198 201 4.280174 GGTTCAGCATCTTCATGGCATATT 59.720 41.667 0.00 0.00 0.00 1.28
199 202 3.825014 GGTTCAGCATCTTCATGGCATAT 59.175 43.478 0.00 0.00 0.00 1.78
200 203 3.216800 GGTTCAGCATCTTCATGGCATA 58.783 45.455 0.00 0.00 0.00 3.14
201 204 2.029623 GGTTCAGCATCTTCATGGCAT 58.970 47.619 0.00 0.00 0.00 4.40
202 205 1.466856 GGTTCAGCATCTTCATGGCA 58.533 50.000 0.00 0.00 0.00 4.92
203 206 0.379669 CGGTTCAGCATCTTCATGGC 59.620 55.000 0.00 0.00 0.00 4.40
204 207 1.742761 ACGGTTCAGCATCTTCATGG 58.257 50.000 0.00 0.00 0.00 3.66
205 208 2.096496 GGAACGGTTCAGCATCTTCATG 59.904 50.000 21.36 0.00 0.00 3.07
206 209 2.290260 TGGAACGGTTCAGCATCTTCAT 60.290 45.455 21.36 0.00 0.00 2.57
207 210 1.071542 TGGAACGGTTCAGCATCTTCA 59.928 47.619 21.36 5.77 0.00 3.02
208 211 1.464997 GTGGAACGGTTCAGCATCTTC 59.535 52.381 21.36 3.29 0.00 2.87
209 212 1.523758 GTGGAACGGTTCAGCATCTT 58.476 50.000 21.36 0.00 0.00 2.40
210 213 0.321653 GGTGGAACGGTTCAGCATCT 60.322 55.000 21.36 0.00 38.12 2.90
211 214 1.305930 GGGTGGAACGGTTCAGCATC 61.306 60.000 21.36 11.58 38.12 3.91
212 215 1.303317 GGGTGGAACGGTTCAGCAT 60.303 57.895 21.36 0.00 38.12 3.79
213 216 2.112297 GGGTGGAACGGTTCAGCA 59.888 61.111 21.36 9.16 38.12 4.41
214 217 1.527380 TTGGGTGGAACGGTTCAGC 60.527 57.895 21.36 1.11 38.12 4.26
215 218 1.170290 GGTTGGGTGGAACGGTTCAG 61.170 60.000 21.36 0.00 38.12 3.02
216 219 1.152922 GGTTGGGTGGAACGGTTCA 60.153 57.895 21.36 6.13 38.12 3.18
217 220 0.752376 TTGGTTGGGTGGAACGGTTC 60.752 55.000 12.41 12.41 38.12 3.62
218 221 0.324460 TTTGGTTGGGTGGAACGGTT 60.324 50.000 0.00 0.00 38.12 4.44
219 222 0.105913 ATTTGGTTGGGTGGAACGGT 60.106 50.000 0.00 0.00 38.12 4.83
220 223 0.601057 GATTTGGTTGGGTGGAACGG 59.399 55.000 0.00 0.00 38.12 4.44
221 224 0.239879 CGATTTGGTTGGGTGGAACG 59.760 55.000 0.00 0.00 38.12 3.95
222 225 0.601057 CCGATTTGGTTGGGTGGAAC 59.399 55.000 0.00 0.00 0.00 3.62
223 226 3.043998 CCGATTTGGTTGGGTGGAA 57.956 52.632 0.00 0.00 0.00 3.53
224 227 4.832741 CCGATTTGGTTGGGTGGA 57.167 55.556 0.00 0.00 0.00 4.02
233 236 3.694734 CCATTTGATTCGACCGATTTGG 58.305 45.455 0.00 0.00 46.41 3.28
234 237 3.108144 GCCATTTGATTCGACCGATTTG 58.892 45.455 0.00 0.00 0.00 2.32
235 238 2.099098 GGCCATTTGATTCGACCGATTT 59.901 45.455 0.00 0.00 0.00 2.17
236 239 1.676006 GGCCATTTGATTCGACCGATT 59.324 47.619 0.00 0.00 0.00 3.34
237 240 1.308998 GGCCATTTGATTCGACCGAT 58.691 50.000 0.00 0.00 0.00 4.18
238 241 1.087202 CGGCCATTTGATTCGACCGA 61.087 55.000 2.24 0.00 41.61 4.69
239 242 1.351707 CGGCCATTTGATTCGACCG 59.648 57.895 2.24 0.00 0.00 4.79
240 243 1.064134 GCGGCCATTTGATTCGACC 59.936 57.895 2.24 0.00 0.00 4.79
241 244 1.064134 GGCGGCCATTTGATTCGAC 59.936 57.895 15.62 0.00 0.00 4.20
242 245 2.118404 GGGCGGCCATTTGATTCGA 61.118 57.895 25.33 0.00 0.00 3.71
243 246 1.666209 AAGGGCGGCCATTTGATTCG 61.666 55.000 31.59 0.00 0.00 3.34
244 247 0.536724 AAAGGGCGGCCATTTGATTC 59.463 50.000 28.64 5.19 36.12 2.52
245 248 2.682631 AAAGGGCGGCCATTTGATT 58.317 47.368 28.64 11.73 36.12 2.57
246 249 4.459199 AAAGGGCGGCCATTTGAT 57.541 50.000 28.64 7.07 36.12 2.57
257 260 1.105457 TAGTCATGCATGCAAAGGGC 58.895 50.000 26.68 18.35 45.13 5.19
258 261 2.691526 ACATAGTCATGCATGCAAAGGG 59.308 45.455 26.68 14.51 35.39 3.95
259 262 3.379057 TCACATAGTCATGCATGCAAAGG 59.621 43.478 26.68 17.10 35.39 3.11
260 263 4.598062 CTCACATAGTCATGCATGCAAAG 58.402 43.478 26.68 20.04 35.39 2.77
261 264 3.181494 GCTCACATAGTCATGCATGCAAA 60.181 43.478 26.68 13.49 35.39 3.68
262 265 2.356695 GCTCACATAGTCATGCATGCAA 59.643 45.455 26.68 8.17 35.39 4.08
263 266 1.944709 GCTCACATAGTCATGCATGCA 59.055 47.619 25.04 25.04 35.39 3.96
264 267 1.944709 TGCTCACATAGTCATGCATGC 59.055 47.619 22.25 11.82 35.39 4.06
266 269 3.813724 GTCATGCTCACATAGTCATGCAT 59.186 43.478 0.00 0.00 41.08 3.96
267 270 3.118519 AGTCATGCTCACATAGTCATGCA 60.119 43.478 0.00 0.00 38.52 3.96
268 271 3.247886 CAGTCATGCTCACATAGTCATGC 59.752 47.826 0.00 0.00 38.52 4.06
269 272 3.808174 CCAGTCATGCTCACATAGTCATG 59.192 47.826 0.00 0.00 39.28 3.07
270 273 3.453717 ACCAGTCATGCTCACATAGTCAT 59.546 43.478 0.00 0.00 33.67 3.06
271 274 2.833943 ACCAGTCATGCTCACATAGTCA 59.166 45.455 0.00 0.00 33.67 3.41
272 275 3.193263 CACCAGTCATGCTCACATAGTC 58.807 50.000 0.00 0.00 33.67 2.59
273 276 2.093288 CCACCAGTCATGCTCACATAGT 60.093 50.000 0.00 0.00 33.67 2.12
274 277 2.093288 ACCACCAGTCATGCTCACATAG 60.093 50.000 0.00 0.00 33.67 2.23
275 278 1.908619 ACCACCAGTCATGCTCACATA 59.091 47.619 0.00 0.00 33.67 2.29
276 279 0.694771 ACCACCAGTCATGCTCACAT 59.305 50.000 0.00 0.00 36.79 3.21
277 280 0.035317 GACCACCAGTCATGCTCACA 59.965 55.000 0.00 0.00 45.55 3.58
278 281 2.846371 GACCACCAGTCATGCTCAC 58.154 57.895 0.00 0.00 45.55 3.51
287 290 0.472352 TTTAGGACGGGACCACCAGT 60.472 55.000 0.00 0.00 46.44 4.00
288 291 0.909623 ATTTAGGACGGGACCACCAG 59.090 55.000 0.00 0.00 40.22 4.00
289 292 2.250921 TATTTAGGACGGGACCACCA 57.749 50.000 0.00 0.00 40.22 4.17
290 293 3.851458 ATTATTTAGGACGGGACCACC 57.149 47.619 0.00 0.00 0.00 4.61
291 294 4.753610 GCTAATTATTTAGGACGGGACCAC 59.246 45.833 6.54 0.00 36.18 4.16
292 295 4.657039 AGCTAATTATTTAGGACGGGACCA 59.343 41.667 6.54 0.00 36.18 4.02
293 296 5.221581 TGAGCTAATTATTTAGGACGGGACC 60.222 44.000 6.54 0.00 36.18 4.46
294 297 5.695363 GTGAGCTAATTATTTAGGACGGGAC 59.305 44.000 6.54 0.00 36.18 4.46
295 298 5.221581 GGTGAGCTAATTATTTAGGACGGGA 60.222 44.000 6.54 0.00 36.18 5.14
296 299 4.995487 GGTGAGCTAATTATTTAGGACGGG 59.005 45.833 6.54 0.00 36.18 5.28
297 300 5.465724 GTGGTGAGCTAATTATTTAGGACGG 59.534 44.000 6.54 0.00 36.18 4.79
298 301 6.281405 AGTGGTGAGCTAATTATTTAGGACG 58.719 40.000 6.54 0.00 36.18 4.79
299 302 9.780186 ATAAGTGGTGAGCTAATTATTTAGGAC 57.220 33.333 6.54 0.00 36.18 3.85
306 309 9.442047 GCTGAATATAAGTGGTGAGCTAATTAT 57.558 33.333 0.00 0.00 32.60 1.28
307 310 7.878127 GGCTGAATATAAGTGGTGAGCTAATTA 59.122 37.037 0.00 0.00 0.00 1.40
308 311 6.712547 GGCTGAATATAAGTGGTGAGCTAATT 59.287 38.462 0.00 0.00 0.00 1.40
309 312 6.183361 TGGCTGAATATAAGTGGTGAGCTAAT 60.183 38.462 0.00 0.00 0.00 1.73
310 313 5.130311 TGGCTGAATATAAGTGGTGAGCTAA 59.870 40.000 0.00 0.00 0.00 3.09
311 314 4.653801 TGGCTGAATATAAGTGGTGAGCTA 59.346 41.667 0.00 0.00 0.00 3.32
312 315 3.455910 TGGCTGAATATAAGTGGTGAGCT 59.544 43.478 0.00 0.00 0.00 4.09
313 316 3.808728 TGGCTGAATATAAGTGGTGAGC 58.191 45.455 0.00 0.00 0.00 4.26
314 317 5.647658 TGTTTGGCTGAATATAAGTGGTGAG 59.352 40.000 0.00 0.00 0.00 3.51
315 318 5.414454 GTGTTTGGCTGAATATAAGTGGTGA 59.586 40.000 0.00 0.00 0.00 4.02
316 319 5.182950 TGTGTTTGGCTGAATATAAGTGGTG 59.817 40.000 0.00 0.00 0.00 4.17
317 320 5.321102 TGTGTTTGGCTGAATATAAGTGGT 58.679 37.500 0.00 0.00 0.00 4.16
318 321 5.895636 TGTGTTTGGCTGAATATAAGTGG 57.104 39.130 0.00 0.00 0.00 4.00
319 322 7.087409 TCATGTGTTTGGCTGAATATAAGTG 57.913 36.000 0.00 0.00 0.00 3.16
320 323 7.701539 TTCATGTGTTTGGCTGAATATAAGT 57.298 32.000 0.00 0.00 0.00 2.24
321 324 9.027129 CAATTCATGTGTTTGGCTGAATATAAG 57.973 33.333 0.00 0.00 37.35 1.73
322 325 8.747471 TCAATTCATGTGTTTGGCTGAATATAA 58.253 29.630 0.00 0.00 37.35 0.98
323 326 8.291191 TCAATTCATGTGTTTGGCTGAATATA 57.709 30.769 0.00 0.00 37.35 0.86
324 327 7.172868 TCAATTCATGTGTTTGGCTGAATAT 57.827 32.000 0.00 0.00 37.35 1.28
325 328 6.587206 TCAATTCATGTGTTTGGCTGAATA 57.413 33.333 0.00 0.00 37.35 1.75
326 329 5.471556 TCAATTCATGTGTTTGGCTGAAT 57.528 34.783 0.00 0.00 39.39 2.57
327 330 4.933505 TCAATTCATGTGTTTGGCTGAA 57.066 36.364 0.00 0.00 32.63 3.02
328 331 4.933505 TTCAATTCATGTGTTTGGCTGA 57.066 36.364 0.00 0.00 0.00 4.26
329 332 4.390603 CCATTCAATTCATGTGTTTGGCTG 59.609 41.667 0.00 0.00 0.00 4.85
330 333 4.040706 ACCATTCAATTCATGTGTTTGGCT 59.959 37.500 0.00 0.00 0.00 4.75
331 334 4.317488 ACCATTCAATTCATGTGTTTGGC 58.683 39.130 0.00 0.00 0.00 4.52
332 335 5.990386 TGAACCATTCAATTCATGTGTTTGG 59.010 36.000 0.00 0.00 36.59 3.28
333 336 7.479897 TTGAACCATTCAATTCATGTGTTTG 57.520 32.000 0.00 0.00 44.21 2.93
364 367 4.353489 ATGGGTTGGGACCATTCAATTTTT 59.647 37.500 0.00 0.00 46.25 1.94
365 368 3.915711 ATGGGTTGGGACCATTCAATTTT 59.084 39.130 0.00 0.00 46.25 1.82
366 369 3.530017 ATGGGTTGGGACCATTCAATTT 58.470 40.909 0.00 0.00 46.25 1.82
367 370 3.203997 ATGGGTTGGGACCATTCAATT 57.796 42.857 0.00 0.00 46.25 2.32
368 371 2.946791 ATGGGTTGGGACCATTCAAT 57.053 45.000 0.00 0.00 46.25 2.57
375 378 1.210967 TCGTATGAATGGGTTGGGACC 59.789 52.381 0.00 0.00 45.75 4.46
376 379 2.285977 GTCGTATGAATGGGTTGGGAC 58.714 52.381 0.00 0.00 0.00 4.46
377 380 1.909986 TGTCGTATGAATGGGTTGGGA 59.090 47.619 0.00 0.00 0.00 4.37
378 381 2.014128 GTGTCGTATGAATGGGTTGGG 58.986 52.381 0.00 0.00 0.00 4.12
379 382 2.705730 TGTGTCGTATGAATGGGTTGG 58.294 47.619 0.00 0.00 0.00 3.77
380 383 4.394610 TGAATGTGTCGTATGAATGGGTTG 59.605 41.667 0.00 0.00 0.00 3.77
381 384 4.584874 TGAATGTGTCGTATGAATGGGTT 58.415 39.130 0.00 0.00 0.00 4.11
382 385 4.214986 TGAATGTGTCGTATGAATGGGT 57.785 40.909 0.00 0.00 0.00 4.51
383 386 4.201910 GGTTGAATGTGTCGTATGAATGGG 60.202 45.833 0.00 0.00 0.00 4.00
384 387 4.394610 TGGTTGAATGTGTCGTATGAATGG 59.605 41.667 0.00 0.00 0.00 3.16
385 388 5.544136 TGGTTGAATGTGTCGTATGAATG 57.456 39.130 0.00 0.00 0.00 2.67
386 389 6.378582 GTTTGGTTGAATGTGTCGTATGAAT 58.621 36.000 0.00 0.00 0.00 2.57
387 390 5.559225 CGTTTGGTTGAATGTGTCGTATGAA 60.559 40.000 0.00 0.00 0.00 2.57
388 391 4.084276 CGTTTGGTTGAATGTGTCGTATGA 60.084 41.667 0.00 0.00 0.00 2.15
389 392 4.148166 CGTTTGGTTGAATGTGTCGTATG 58.852 43.478 0.00 0.00 0.00 2.39
390 393 3.364565 GCGTTTGGTTGAATGTGTCGTAT 60.365 43.478 0.00 0.00 0.00 3.06
391 394 2.032722 GCGTTTGGTTGAATGTGTCGTA 60.033 45.455 0.00 0.00 0.00 3.43
392 395 1.268335 GCGTTTGGTTGAATGTGTCGT 60.268 47.619 0.00 0.00 0.00 4.34
393 396 1.268285 TGCGTTTGGTTGAATGTGTCG 60.268 47.619 0.00 0.00 0.00 4.35
394 397 2.483583 TGCGTTTGGTTGAATGTGTC 57.516 45.000 0.00 0.00 0.00 3.67
395 398 2.288152 GGATGCGTTTGGTTGAATGTGT 60.288 45.455 0.00 0.00 0.00 3.72
396 399 2.030007 AGGATGCGTTTGGTTGAATGTG 60.030 45.455 0.00 0.00 0.00 3.21
397 400 2.238521 AGGATGCGTTTGGTTGAATGT 58.761 42.857 0.00 0.00 0.00 2.71
398 401 3.302365 AAGGATGCGTTTGGTTGAATG 57.698 42.857 0.00 0.00 0.00 2.67
399 402 3.443681 CCTAAGGATGCGTTTGGTTGAAT 59.556 43.478 0.00 0.00 0.00 2.57
400 403 2.817258 CCTAAGGATGCGTTTGGTTGAA 59.183 45.455 0.00 0.00 0.00 2.69
401 404 2.432444 CCTAAGGATGCGTTTGGTTGA 58.568 47.619 0.00 0.00 0.00 3.18
402 405 1.135402 GCCTAAGGATGCGTTTGGTTG 60.135 52.381 0.00 0.00 0.00 3.77
403 406 1.173913 GCCTAAGGATGCGTTTGGTT 58.826 50.000 0.00 0.00 0.00 3.67
404 407 0.037590 TGCCTAAGGATGCGTTTGGT 59.962 50.000 0.00 0.00 0.00 3.67
405 408 1.135402 GTTGCCTAAGGATGCGTTTGG 60.135 52.381 0.00 0.00 0.00 3.28
406 409 1.812571 AGTTGCCTAAGGATGCGTTTG 59.187 47.619 0.00 0.00 0.00 2.93
407 410 1.812571 CAGTTGCCTAAGGATGCGTTT 59.187 47.619 0.00 0.00 0.00 3.60
408 411 1.453155 CAGTTGCCTAAGGATGCGTT 58.547 50.000 0.00 0.00 0.00 4.84
409 412 0.392998 CCAGTTGCCTAAGGATGCGT 60.393 55.000 0.00 0.00 0.00 5.24
410 413 0.392998 ACCAGTTGCCTAAGGATGCG 60.393 55.000 0.00 0.00 0.00 4.73
411 414 1.745653 GAACCAGTTGCCTAAGGATGC 59.254 52.381 0.00 0.00 0.00 3.91
412 415 2.009774 CGAACCAGTTGCCTAAGGATG 58.990 52.381 0.00 0.00 0.00 3.51
413 416 1.065418 CCGAACCAGTTGCCTAAGGAT 60.065 52.381 0.00 0.00 0.00 3.24
414 417 0.323629 CCGAACCAGTTGCCTAAGGA 59.676 55.000 0.00 0.00 0.00 3.36
415 418 0.323629 TCCGAACCAGTTGCCTAAGG 59.676 55.000 0.00 0.00 0.00 2.69
416 419 2.280628 GATCCGAACCAGTTGCCTAAG 58.719 52.381 0.00 0.00 0.00 2.18
417 420 1.065709 GGATCCGAACCAGTTGCCTAA 60.066 52.381 0.00 0.00 0.00 2.69
418 421 0.539986 GGATCCGAACCAGTTGCCTA 59.460 55.000 0.00 0.00 0.00 3.93
419 422 1.299976 GGATCCGAACCAGTTGCCT 59.700 57.895 0.00 0.00 0.00 4.75
420 423 2.106683 CGGATCCGAACCAGTTGCC 61.107 63.158 30.62 0.00 42.83 4.52
421 424 1.079405 TCGGATCCGAACCAGTTGC 60.079 57.895 33.96 0.00 46.01 4.17
450 453 0.250381 TTGTTAATCGGGCGGTGTGT 60.250 50.000 0.00 0.00 0.00 3.72
465 468 2.876550 GTCCTAGTGCGGTTTCTTTGTT 59.123 45.455 0.00 0.00 0.00 2.83
466 469 2.158871 TGTCCTAGTGCGGTTTCTTTGT 60.159 45.455 0.00 0.00 0.00 2.83
467 470 2.223377 GTGTCCTAGTGCGGTTTCTTTG 59.777 50.000 0.00 0.00 0.00 2.77
468 471 2.158871 TGTGTCCTAGTGCGGTTTCTTT 60.159 45.455 0.00 0.00 0.00 2.52
471 474 1.873698 TTGTGTCCTAGTGCGGTTTC 58.126 50.000 0.00 0.00 0.00 2.78
564 601 3.721706 AAGGCAGGGCGAGGAAGG 61.722 66.667 0.00 0.00 0.00 3.46
582 619 6.127703 GGAGTACTATTTTTCTTTTGGAGGGC 60.128 42.308 0.00 0.00 0.00 5.19
593 630 5.411669 CAGTGGGTGTGGAGTACTATTTTTC 59.588 44.000 0.00 0.00 0.00 2.29
599 636 1.263356 GCAGTGGGTGTGGAGTACTA 58.737 55.000 0.00 0.00 0.00 1.82
600 637 1.481056 GGCAGTGGGTGTGGAGTACT 61.481 60.000 0.00 0.00 0.00 2.73
601 638 1.003718 GGCAGTGGGTGTGGAGTAC 60.004 63.158 0.00 0.00 0.00 2.73
602 639 1.460497 TGGCAGTGGGTGTGGAGTA 60.460 57.895 0.00 0.00 0.00 2.59
603 640 2.772191 TGGCAGTGGGTGTGGAGT 60.772 61.111 0.00 0.00 0.00 3.85
794 846 4.478371 TCGCGTCCGCCTCTCCTA 62.478 66.667 5.77 0.00 37.98 2.94
875 927 3.995048 GGTTTCTATAGGGAATGCTACGC 59.005 47.826 0.00 0.00 0.00 4.42
877 929 5.567025 CGAGGGTTTCTATAGGGAATGCTAC 60.567 48.000 0.00 0.00 0.00 3.58
969 1030 2.895372 GGCCACTAATCCCGCACG 60.895 66.667 0.00 0.00 0.00 5.34
982 1043 4.150994 GGCGATTAATTCCGGCCA 57.849 55.556 2.24 0.00 44.11 5.36
1170 1237 4.332543 TCCTCAACTCCCGCCCCT 62.333 66.667 0.00 0.00 0.00 4.79
1823 1902 4.208686 CCTCCGGGTAGCACGAGC 62.209 72.222 0.00 0.00 42.56 5.03
2162 2242 5.629849 CAGTAGTGTCTAGAACCTTGAAACG 59.370 44.000 0.00 0.00 30.81 3.60
2227 2313 4.887071 TCATCTACGGGCTGCAAATTATTT 59.113 37.500 0.50 0.00 0.00 1.40
2228 2314 4.460263 TCATCTACGGGCTGCAAATTATT 58.540 39.130 0.50 0.00 0.00 1.40
2229 2315 4.085357 TCATCTACGGGCTGCAAATTAT 57.915 40.909 0.50 0.00 0.00 1.28
2230 2316 3.552132 TCATCTACGGGCTGCAAATTA 57.448 42.857 0.50 0.00 0.00 1.40
2243 2329 9.110617 CATTTGCAATATGTTTCGATCATCTAC 57.889 33.333 0.00 0.00 0.00 2.59
2325 2426 6.477253 AGGAGATTTTTCCCAGAAGAAGTAC 58.523 40.000 0.00 0.00 38.02 2.73
2331 2432 8.028652 AGTAGATAGGAGATTTTTCCCAGAAG 57.971 38.462 0.00 0.00 38.02 2.85
2433 3017 2.103601 ACACGCATGATCTCATCCATCA 59.896 45.455 0.00 0.00 33.61 3.07
2437 3021 2.054363 CGTACACGCATGATCTCATCC 58.946 52.381 0.00 0.00 33.61 3.51
2671 4887 3.832171 CTCGCACGCGCAACTCTC 61.832 66.667 5.73 0.00 38.40 3.20
2709 4925 3.679980 CGTGTGAAGATTCAACGGAGAAT 59.320 43.478 15.93 4.53 40.75 2.40
2718 4934 3.069586 AGTCTGAACCGTGTGAAGATTCA 59.930 43.478 0.00 0.00 34.20 2.57
2749 4965 4.416738 GGTGGAGGGCACAGAGGC 62.417 72.222 0.00 0.00 43.27 4.70
2788 5004 6.092259 GGTTGTTGCCACTTAAGTCTACATAG 59.908 42.308 4.77 0.00 0.00 2.23
2921 5137 1.077501 CACCGCCACAATCCATCCT 60.078 57.895 0.00 0.00 0.00 3.24
2957 5173 3.888583 ACCGGTACAAAGTTCCTTTTCA 58.111 40.909 4.49 0.00 30.60 2.69
3067 5283 6.203072 AGGTAGCTCCCTGTTCTTATAAGAA 58.797 40.000 21.46 21.46 38.65 2.52
3068 5284 5.778542 AGGTAGCTCCCTGTTCTTATAAGA 58.221 41.667 11.24 11.24 36.75 2.10
3069 5285 5.011227 GGAGGTAGCTCCCTGTTCTTATAAG 59.989 48.000 27.52 6.11 37.54 1.73
3070 5286 4.900054 GGAGGTAGCTCCCTGTTCTTATAA 59.100 45.833 27.52 0.00 37.54 0.98
3071 5287 4.481072 GGAGGTAGCTCCCTGTTCTTATA 58.519 47.826 27.52 0.00 37.54 0.98
3072 5288 3.310193 GGAGGTAGCTCCCTGTTCTTAT 58.690 50.000 27.52 0.00 37.54 1.73
3073 5289 2.748388 GGAGGTAGCTCCCTGTTCTTA 58.252 52.381 27.52 0.00 37.54 2.10
3074 5290 1.574263 GGAGGTAGCTCCCTGTTCTT 58.426 55.000 27.52 0.00 37.54 2.52
3075 5291 3.308626 GGAGGTAGCTCCCTGTTCT 57.691 57.895 27.52 0.00 37.54 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.