Multiple sequence alignment - TraesCS2B01G271000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G271000 chr2B 100.000 4828 0 0 1 4828 371154452 371159279 0.000000e+00 8916.0
1 TraesCS2B01G271000 chr2B 89.943 1412 115 13 2172 3562 84422579 84423984 0.000000e+00 1796.0
2 TraesCS2B01G271000 chr2B 86.893 412 48 5 237 645 757475100 757474692 1.580000e-124 457.0
3 TraesCS2B01G271000 chr2B 79.358 436 67 10 3139 3562 750080342 750080766 7.910000e-73 285.0
4 TraesCS2B01G271000 chr1A 97.709 1528 23 1 2046 3561 405678695 405680222 0.000000e+00 2617.0
5 TraesCS2B01G271000 chr7B 96.284 1534 44 3 2038 3560 667412093 667413624 0.000000e+00 2505.0
6 TraesCS2B01G271000 chr7B 86.946 406 47 5 243 643 299250650 299250246 7.370000e-123 451.0
7 TraesCS2B01G271000 chr4B 95.185 1537 57 2 2038 3562 509584200 509585731 0.000000e+00 2412.0
8 TraesCS2B01G271000 chr4B 95.349 43 2 0 4006 4048 483511767 483511809 8.670000e-08 69.4
9 TraesCS2B01G271000 chr5D 90.091 1544 126 6 2042 3560 138479755 138478214 0.000000e+00 1978.0
10 TraesCS2B01G271000 chr5D 94.059 1111 39 6 2042 3140 482554988 482553893 0.000000e+00 1661.0
11 TraesCS2B01G271000 chr5D 91.837 245 15 3 1 244 236989148 236988908 2.150000e-88 337.0
12 TraesCS2B01G271000 chr2D 94.149 1299 32 10 3568 4828 299897205 299895913 0.000000e+00 1938.0
13 TraesCS2B01G271000 chr2D 97.248 1090 20 3 920 2005 299898273 299897190 0.000000e+00 1838.0
14 TraesCS2B01G271000 chr2D 90.119 506 43 4 237 739 299912305 299911804 0.000000e+00 651.0
15 TraesCS2B01G271000 chr2D 89.837 246 21 4 1 244 284711157 284711400 3.630000e-81 313.0
16 TraesCS2B01G271000 chr2D 95.349 43 2 0 4006 4048 360992128 360992170 8.670000e-08 69.4
17 TraesCS2B01G271000 chr3B 89.290 1550 113 20 2038 3560 66889314 66887791 0.000000e+00 1893.0
18 TraesCS2B01G271000 chr2A 96.757 1141 20 3 867 2005 376110498 376109373 0.000000e+00 1886.0
19 TraesCS2B01G271000 chr2A 95.563 631 15 3 3568 4192 376109388 376108765 0.000000e+00 998.0
20 TraesCS2B01G271000 chr2A 94.172 652 19 2 4178 4828 376108752 376108119 0.000000e+00 976.0
21 TraesCS2B01G271000 chr2A 89.649 599 57 4 237 833 376113187 376112592 0.000000e+00 758.0
22 TraesCS2B01G271000 chr2A 90.244 246 20 4 1 244 299624290 299624533 7.800000e-83 318.0
23 TraesCS2B01G271000 chr2A 86.275 204 21 6 4178 4376 279056170 279056371 1.050000e-51 215.0
24 TraesCS2B01G271000 chr2A 85.714 203 25 4 4178 4376 591275595 591275393 1.360000e-50 211.0
25 TraesCS2B01G271000 chr2A 95.238 42 2 0 4006 4047 315809796 315809755 3.120000e-07 67.6
26 TraesCS2B01G271000 chr7A 89.387 1159 95 12 2429 3560 705602404 705603561 0.000000e+00 1434.0
27 TraesCS2B01G271000 chr7A 90.137 1095 80 14 2492 3561 57158844 57157753 0.000000e+00 1399.0
28 TraesCS2B01G271000 chr7A 89.863 1095 77 18 2498 3560 526149043 526150135 0.000000e+00 1376.0
29 TraesCS2B01G271000 chr7A 91.000 300 26 1 2048 2347 57177824 57177526 2.090000e-108 403.0
30 TraesCS2B01G271000 chr7A 87.179 195 21 4 4186 4376 204736807 204737001 8.140000e-53 219.0
31 TraesCS2B01G271000 chr3D 95.330 878 30 2 2270 3136 161923430 161922553 0.000000e+00 1384.0
32 TraesCS2B01G271000 chr3D 86.585 410 52 3 237 644 11008275 11007867 2.650000e-122 449.0
33 TraesCS2B01G271000 chr3D 96.117 103 4 0 2042 2144 161924553 161924451 8.310000e-38 169.0
34 TraesCS2B01G271000 chr3D 96.296 81 3 0 2116 2196 161924455 161924375 3.030000e-27 134.0
35 TraesCS2B01G271000 chr6D 88.538 759 65 4 2042 2780 62214000 62213244 0.000000e+00 900.0
36 TraesCS2B01G271000 chr6D 87.348 411 47 4 237 643 327204092 327204501 2.630000e-127 466.0
37 TraesCS2B01G271000 chr6D 89.516 248 22 4 1 244 193322412 193322165 1.300000e-80 311.0
38 TraesCS2B01G271000 chr6D 82.230 287 45 5 2042 2324 38363392 38363676 4.830000e-60 243.0
39 TraesCS2B01G271000 chr5B 86.842 418 53 2 236 652 272243163 272242747 2.630000e-127 466.0
40 TraesCS2B01G271000 chr5B 83.801 321 48 4 2044 2362 70438625 70438307 7.850000e-78 302.0
41 TraesCS2B01G271000 chr5B 95.349 43 2 0 4006 4048 81370511 81370553 8.670000e-08 69.4
42 TraesCS2B01G271000 chr4D 86.861 411 49 4 237 643 34653426 34653017 5.700000e-124 455.0
43 TraesCS2B01G271000 chr1D 86.779 416 46 8 237 647 12422130 12421719 5.700000e-124 455.0
44 TraesCS2B01G271000 chr1D 90.244 246 21 3 1 244 191571913 191571669 7.800000e-83 318.0
45 TraesCS2B01G271000 chr1D 87.634 186 22 1 644 829 458393132 458393316 1.050000e-51 215.0
46 TraesCS2B01G271000 chr1D 93.023 43 3 0 4006 4048 274943969 274943927 4.030000e-06 63.9
47 TraesCS2B01G271000 chr6B 93.443 244 16 0 1 244 410689228 410688985 3.550000e-96 363.0
48 TraesCS2B01G271000 chr6B 93.033 244 17 0 1 244 410242165 410241922 1.650000e-94 357.0
49 TraesCS2B01G271000 chr7D 89.804 255 20 4 1 252 251519779 251519528 6.030000e-84 322.0
50 TraesCS2B01G271000 chr7D 89.837 246 20 4 1 244 339768938 339768696 1.300000e-80 311.0
51 TraesCS2B01G271000 chr6A 86.294 197 22 5 4185 4376 504475989 504475793 4.900000e-50 209.0
52 TraesCS2B01G271000 chr3A 86.154 195 21 6 4185 4376 585472884 585472693 6.330000e-49 206.0
53 TraesCS2B01G271000 chr4A 85.294 204 23 6 4178 4376 176859868 176860069 2.280000e-48 204.0
54 TraesCS2B01G271000 chr1B 85.714 196 22 5 4185 4376 641608205 641608012 8.190000e-48 202.0
55 TraesCS2B01G271000 chr1B 97.674 43 1 0 4006 4048 547029500 547029458 1.860000e-09 75.0
56 TraesCS2B01G271000 chr5A 93.333 45 3 0 4006 4050 78965502 78965458 3.120000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G271000 chr2B 371154452 371159279 4827 False 8916.000000 8916 100.000000 1 4828 1 chr2B.!!$F2 4827
1 TraesCS2B01G271000 chr2B 84422579 84423984 1405 False 1796.000000 1796 89.943000 2172 3562 1 chr2B.!!$F1 1390
2 TraesCS2B01G271000 chr1A 405678695 405680222 1527 False 2617.000000 2617 97.709000 2046 3561 1 chr1A.!!$F1 1515
3 TraesCS2B01G271000 chr7B 667412093 667413624 1531 False 2505.000000 2505 96.284000 2038 3560 1 chr7B.!!$F1 1522
4 TraesCS2B01G271000 chr4B 509584200 509585731 1531 False 2412.000000 2412 95.185000 2038 3562 1 chr4B.!!$F2 1524
5 TraesCS2B01G271000 chr5D 138478214 138479755 1541 True 1978.000000 1978 90.091000 2042 3560 1 chr5D.!!$R1 1518
6 TraesCS2B01G271000 chr5D 482553893 482554988 1095 True 1661.000000 1661 94.059000 2042 3140 1 chr5D.!!$R3 1098
7 TraesCS2B01G271000 chr2D 299895913 299898273 2360 True 1888.000000 1938 95.698500 920 4828 2 chr2D.!!$R2 3908
8 TraesCS2B01G271000 chr2D 299911804 299912305 501 True 651.000000 651 90.119000 237 739 1 chr2D.!!$R1 502
9 TraesCS2B01G271000 chr3B 66887791 66889314 1523 True 1893.000000 1893 89.290000 2038 3560 1 chr3B.!!$R1 1522
10 TraesCS2B01G271000 chr2A 376108119 376113187 5068 True 1154.500000 1886 94.035250 237 4828 4 chr2A.!!$R3 4591
11 TraesCS2B01G271000 chr7A 705602404 705603561 1157 False 1434.000000 1434 89.387000 2429 3560 1 chr7A.!!$F3 1131
12 TraesCS2B01G271000 chr7A 57157753 57158844 1091 True 1399.000000 1399 90.137000 2492 3561 1 chr7A.!!$R1 1069
13 TraesCS2B01G271000 chr7A 526149043 526150135 1092 False 1376.000000 1376 89.863000 2498 3560 1 chr7A.!!$F2 1062
14 TraesCS2B01G271000 chr3D 161922553 161924553 2000 True 562.333333 1384 95.914333 2042 3136 3 chr3D.!!$R2 1094
15 TraesCS2B01G271000 chr6D 62213244 62214000 756 True 900.000000 900 88.538000 2042 2780 1 chr6D.!!$R1 738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.031314 CGAGGATCTAGCGCATGTGT 59.969 55.0 11.47 0.0 0.00 3.72 F
819 821 0.031857 CTGGAGAGAGCGCCATACTG 59.968 60.0 2.29 0.0 43.32 2.74 F
1083 3144 0.734889 CTTGCACGGCCTATTTCCTG 59.265 55.0 0.00 0.0 0.00 3.86 F
3104 6100 0.031010 AGTGATAGGTGGGGGAGGTC 60.031 60.0 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2026 4091 2.237392 CGGAGGACCAAAGAATCCTTCT 59.763 50.000 0.00 0.00 45.74 2.85 R
2815 5808 1.665916 CAGACCACCACTGCAGACG 60.666 63.158 23.35 12.01 0.00 4.18 R
3125 6125 1.376424 AGACTGCTCCATTGCCGTG 60.376 57.895 0.00 0.00 30.83 4.94 R
4709 7839 2.876645 GAAGCTCGCGGACGTCAG 60.877 66.667 18.91 15.23 41.18 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.090504 GGAAGACCCCTCAAGACCT 57.909 57.895 0.00 0.00 0.00 3.85
35 36 0.906066 GGAAGACCCCTCAAGACCTC 59.094 60.000 0.00 0.00 0.00 3.85
36 37 0.906066 GAAGACCCCTCAAGACCTCC 59.094 60.000 0.00 0.00 0.00 4.30
37 38 0.494095 AAGACCCCTCAAGACCTCCT 59.506 55.000 0.00 0.00 0.00 3.69
38 39 0.041982 AGACCCCTCAAGACCTCCTC 59.958 60.000 0.00 0.00 0.00 3.71
39 40 0.252284 GACCCCTCAAGACCTCCTCA 60.252 60.000 0.00 0.00 0.00 3.86
40 41 0.545548 ACCCCTCAAGACCTCCTCAC 60.546 60.000 0.00 0.00 0.00 3.51
41 42 1.608717 CCCCTCAAGACCTCCTCACG 61.609 65.000 0.00 0.00 0.00 4.35
42 43 1.608717 CCCTCAAGACCTCCTCACGG 61.609 65.000 0.00 0.00 0.00 4.94
43 44 0.612174 CCTCAAGACCTCCTCACGGA 60.612 60.000 0.00 0.00 37.82 4.69
54 55 1.000955 TCCTCACGGAGAAGAACTTGC 59.999 52.381 2.84 0.00 33.30 4.01
55 56 1.001406 CCTCACGGAGAAGAACTTGCT 59.999 52.381 2.84 0.00 0.00 3.91
56 57 2.231478 CCTCACGGAGAAGAACTTGCTA 59.769 50.000 2.84 0.00 0.00 3.49
57 58 3.246619 CTCACGGAGAAGAACTTGCTAC 58.753 50.000 0.00 0.00 0.00 3.58
58 59 2.891580 TCACGGAGAAGAACTTGCTACT 59.108 45.455 0.00 0.00 0.00 2.57
59 60 3.321111 TCACGGAGAAGAACTTGCTACTT 59.679 43.478 0.00 0.00 0.00 2.24
60 61 3.430218 CACGGAGAAGAACTTGCTACTTG 59.570 47.826 0.00 0.00 0.00 3.16
61 62 3.069729 ACGGAGAAGAACTTGCTACTTGT 59.930 43.478 0.00 0.00 0.00 3.16
62 63 4.280174 ACGGAGAAGAACTTGCTACTTGTA 59.720 41.667 0.00 0.00 0.00 2.41
63 64 5.047235 ACGGAGAAGAACTTGCTACTTGTAT 60.047 40.000 0.00 0.00 0.00 2.29
64 65 5.517054 CGGAGAAGAACTTGCTACTTGTATC 59.483 44.000 0.00 0.00 0.00 2.24
65 66 5.517054 GGAGAAGAACTTGCTACTTGTATCG 59.483 44.000 0.00 0.00 0.00 2.92
66 67 4.865365 AGAAGAACTTGCTACTTGTATCGC 59.135 41.667 0.00 0.00 0.00 4.58
67 68 3.522553 AGAACTTGCTACTTGTATCGCC 58.477 45.455 0.00 0.00 0.00 5.54
68 69 2.311124 ACTTGCTACTTGTATCGCCC 57.689 50.000 0.00 0.00 0.00 6.13
69 70 1.134491 ACTTGCTACTTGTATCGCCCC 60.134 52.381 0.00 0.00 0.00 5.80
70 71 1.139058 CTTGCTACTTGTATCGCCCCT 59.861 52.381 0.00 0.00 0.00 4.79
71 72 1.200519 TGCTACTTGTATCGCCCCTT 58.799 50.000 0.00 0.00 0.00 3.95
72 73 1.134521 TGCTACTTGTATCGCCCCTTG 60.135 52.381 0.00 0.00 0.00 3.61
73 74 1.134491 GCTACTTGTATCGCCCCTTGT 60.134 52.381 0.00 0.00 0.00 3.16
74 75 2.679930 GCTACTTGTATCGCCCCTTGTT 60.680 50.000 0.00 0.00 0.00 2.83
75 76 1.821216 ACTTGTATCGCCCCTTGTTG 58.179 50.000 0.00 0.00 0.00 3.33
76 77 1.073284 ACTTGTATCGCCCCTTGTTGT 59.927 47.619 0.00 0.00 0.00 3.32
77 78 2.159382 CTTGTATCGCCCCTTGTTGTT 58.841 47.619 0.00 0.00 0.00 2.83
78 79 1.816074 TGTATCGCCCCTTGTTGTTC 58.184 50.000 0.00 0.00 0.00 3.18
79 80 0.725117 GTATCGCCCCTTGTTGTTCG 59.275 55.000 0.00 0.00 0.00 3.95
80 81 0.322322 TATCGCCCCTTGTTGTTCGT 59.678 50.000 0.00 0.00 0.00 3.85
81 82 1.234615 ATCGCCCCTTGTTGTTCGTG 61.235 55.000 0.00 0.00 0.00 4.35
82 83 2.903547 CGCCCCTTGTTGTTCGTGG 61.904 63.158 0.00 0.00 0.00 4.94
83 84 1.527380 GCCCCTTGTTGTTCGTGGA 60.527 57.895 0.00 0.00 0.00 4.02
84 85 0.893727 GCCCCTTGTTGTTCGTGGAT 60.894 55.000 0.00 0.00 0.00 3.41
85 86 1.165270 CCCCTTGTTGTTCGTGGATC 58.835 55.000 0.00 0.00 0.00 3.36
86 87 1.544537 CCCCTTGTTGTTCGTGGATCA 60.545 52.381 0.00 0.00 0.00 2.92
87 88 2.436417 CCCTTGTTGTTCGTGGATCAT 58.564 47.619 0.00 0.00 0.00 2.45
88 89 2.162208 CCCTTGTTGTTCGTGGATCATG 59.838 50.000 0.00 0.00 0.00 3.07
89 90 2.813754 CCTTGTTGTTCGTGGATCATGT 59.186 45.455 0.00 0.00 0.00 3.21
90 91 4.000325 CCTTGTTGTTCGTGGATCATGTA 59.000 43.478 0.00 0.00 0.00 2.29
91 92 4.635765 CCTTGTTGTTCGTGGATCATGTAT 59.364 41.667 0.00 0.00 0.00 2.29
92 93 5.220662 CCTTGTTGTTCGTGGATCATGTATC 60.221 44.000 0.00 0.00 0.00 2.24
93 94 5.084818 TGTTGTTCGTGGATCATGTATCT 57.915 39.130 0.00 0.00 34.75 1.98
94 95 5.109210 TGTTGTTCGTGGATCATGTATCTC 58.891 41.667 0.00 0.00 34.75 2.75
95 96 5.105351 TGTTGTTCGTGGATCATGTATCTCT 60.105 40.000 0.00 0.00 34.75 3.10
96 97 5.598416 TGTTCGTGGATCATGTATCTCTT 57.402 39.130 0.00 0.00 34.75 2.85
97 98 5.977635 TGTTCGTGGATCATGTATCTCTTT 58.022 37.500 0.00 0.00 34.75 2.52
98 99 5.812127 TGTTCGTGGATCATGTATCTCTTTG 59.188 40.000 0.00 0.00 34.75 2.77
99 100 5.598416 TCGTGGATCATGTATCTCTTTGT 57.402 39.130 0.00 0.00 34.75 2.83
100 101 5.351458 TCGTGGATCATGTATCTCTTTGTG 58.649 41.667 0.00 0.00 34.75 3.33
101 102 5.105351 TCGTGGATCATGTATCTCTTTGTGT 60.105 40.000 0.00 0.00 34.75 3.72
102 103 5.582269 CGTGGATCATGTATCTCTTTGTGTT 59.418 40.000 0.00 0.00 34.75 3.32
103 104 6.092670 CGTGGATCATGTATCTCTTTGTGTTT 59.907 38.462 0.00 0.00 34.75 2.83
104 105 7.467623 GTGGATCATGTATCTCTTTGTGTTTC 58.532 38.462 0.00 0.00 34.75 2.78
105 106 6.313658 TGGATCATGTATCTCTTTGTGTTTCG 59.686 38.462 0.00 0.00 34.75 3.46
106 107 6.535150 GGATCATGTATCTCTTTGTGTTTCGA 59.465 38.462 0.00 0.00 34.75 3.71
107 108 6.951256 TCATGTATCTCTTTGTGTTTCGAG 57.049 37.500 0.00 0.00 0.00 4.04
108 109 5.869344 TCATGTATCTCTTTGTGTTTCGAGG 59.131 40.000 0.00 0.00 0.00 4.63
109 110 5.462530 TGTATCTCTTTGTGTTTCGAGGA 57.537 39.130 0.00 0.00 0.00 3.71
110 111 6.037786 TGTATCTCTTTGTGTTTCGAGGAT 57.962 37.500 0.00 0.00 0.00 3.24
111 112 6.100004 TGTATCTCTTTGTGTTTCGAGGATC 58.900 40.000 0.00 0.00 0.00 3.36
112 113 4.873746 TCTCTTTGTGTTTCGAGGATCT 57.126 40.909 0.00 0.00 0.00 2.75
113 114 5.977489 TCTCTTTGTGTTTCGAGGATCTA 57.023 39.130 0.00 0.00 0.00 1.98
114 115 5.955488 TCTCTTTGTGTTTCGAGGATCTAG 58.045 41.667 0.00 0.00 0.00 2.43
115 116 4.495422 TCTTTGTGTTTCGAGGATCTAGC 58.505 43.478 0.00 0.00 0.00 3.42
116 117 2.561733 TGTGTTTCGAGGATCTAGCG 57.438 50.000 0.00 0.00 0.00 4.26
117 118 1.201343 GTGTTTCGAGGATCTAGCGC 58.799 55.000 0.00 0.00 0.00 5.92
118 119 0.815095 TGTTTCGAGGATCTAGCGCA 59.185 50.000 11.47 0.00 0.00 6.09
119 120 1.409064 TGTTTCGAGGATCTAGCGCAT 59.591 47.619 11.47 0.00 0.00 4.73
120 121 1.789464 GTTTCGAGGATCTAGCGCATG 59.211 52.381 11.47 0.79 0.00 4.06
121 122 1.032794 TTCGAGGATCTAGCGCATGT 58.967 50.000 11.47 0.00 0.00 3.21
122 123 0.312102 TCGAGGATCTAGCGCATGTG 59.688 55.000 11.47 0.66 0.00 3.21
123 124 0.031314 CGAGGATCTAGCGCATGTGT 59.969 55.000 11.47 0.00 0.00 3.72
124 125 1.266989 CGAGGATCTAGCGCATGTGTA 59.733 52.381 11.47 0.00 0.00 2.90
125 126 2.287608 CGAGGATCTAGCGCATGTGTAA 60.288 50.000 11.47 0.00 0.00 2.41
126 127 3.612717 CGAGGATCTAGCGCATGTGTAAT 60.613 47.826 11.47 0.00 0.00 1.89
127 128 3.919216 AGGATCTAGCGCATGTGTAATC 58.081 45.455 11.47 6.05 0.00 1.75
128 129 2.663602 GGATCTAGCGCATGTGTAATCG 59.336 50.000 11.47 0.00 0.00 3.34
129 130 3.565516 GATCTAGCGCATGTGTAATCGA 58.434 45.455 11.47 0.00 0.00 3.59
130 131 3.430333 TCTAGCGCATGTGTAATCGAA 57.570 42.857 11.47 0.00 0.00 3.71
131 132 3.977427 TCTAGCGCATGTGTAATCGAAT 58.023 40.909 11.47 0.00 0.00 3.34
132 133 5.116069 TCTAGCGCATGTGTAATCGAATA 57.884 39.130 11.47 0.00 0.00 1.75
133 134 5.709966 TCTAGCGCATGTGTAATCGAATAT 58.290 37.500 11.47 0.00 0.00 1.28
134 135 6.156519 TCTAGCGCATGTGTAATCGAATATT 58.843 36.000 11.47 0.00 0.00 1.28
135 136 5.022335 AGCGCATGTGTAATCGAATATTG 57.978 39.130 11.47 0.00 0.00 1.90
136 137 4.511454 AGCGCATGTGTAATCGAATATTGT 59.489 37.500 11.47 0.00 0.00 2.71
137 138 5.007626 AGCGCATGTGTAATCGAATATTGTT 59.992 36.000 11.47 0.00 0.00 2.83
138 139 5.113975 GCGCATGTGTAATCGAATATTGTTG 59.886 40.000 0.30 0.00 0.00 3.33
139 140 5.620822 CGCATGTGTAATCGAATATTGTTGG 59.379 40.000 0.00 0.00 0.00 3.77
140 141 6.494842 GCATGTGTAATCGAATATTGTTGGT 58.505 36.000 0.00 0.00 0.00 3.67
141 142 6.972328 GCATGTGTAATCGAATATTGTTGGTT 59.028 34.615 0.00 0.00 0.00 3.67
142 143 7.487829 GCATGTGTAATCGAATATTGTTGGTTT 59.512 33.333 0.00 0.00 0.00 3.27
143 144 8.797215 CATGTGTAATCGAATATTGTTGGTTTG 58.203 33.333 0.00 0.00 0.00 2.93
144 145 8.100508 TGTGTAATCGAATATTGTTGGTTTGA 57.899 30.769 0.00 0.00 0.00 2.69
145 146 8.233868 TGTGTAATCGAATATTGTTGGTTTGAG 58.766 33.333 0.00 0.00 0.00 3.02
146 147 8.234546 GTGTAATCGAATATTGTTGGTTTGAGT 58.765 33.333 0.00 0.00 0.00 3.41
147 148 8.233868 TGTAATCGAATATTGTTGGTTTGAGTG 58.766 33.333 0.00 0.00 0.00 3.51
148 149 7.447374 AATCGAATATTGTTGGTTTGAGTGA 57.553 32.000 0.00 0.00 0.00 3.41
149 150 7.630242 ATCGAATATTGTTGGTTTGAGTGAT 57.370 32.000 0.00 0.00 0.00 3.06
150 151 7.447374 TCGAATATTGTTGGTTTGAGTGATT 57.553 32.000 0.00 0.00 0.00 2.57
151 152 7.881142 TCGAATATTGTTGGTTTGAGTGATTT 58.119 30.769 0.00 0.00 0.00 2.17
152 153 8.020819 TCGAATATTGTTGGTTTGAGTGATTTC 58.979 33.333 0.00 0.00 0.00 2.17
153 154 8.023128 CGAATATTGTTGGTTTGAGTGATTTCT 58.977 33.333 0.00 0.00 0.00 2.52
154 155 9.346725 GAATATTGTTGGTTTGAGTGATTTCTC 57.653 33.333 0.00 0.00 35.28 2.87
155 156 6.966534 ATTGTTGGTTTGAGTGATTTCTCT 57.033 33.333 0.00 0.00 35.68 3.10
156 157 6.377327 TTGTTGGTTTGAGTGATTTCTCTC 57.623 37.500 3.30 3.30 37.10 3.20
157 158 5.436175 TGTTGGTTTGAGTGATTTCTCTCA 58.564 37.500 7.96 7.96 42.56 3.27
158 159 6.064060 TGTTGGTTTGAGTGATTTCTCTCAT 58.936 36.000 11.81 0.00 43.36 2.90
159 160 6.016860 TGTTGGTTTGAGTGATTTCTCTCATG 60.017 38.462 11.81 0.00 43.36 3.07
160 161 5.624159 TGGTTTGAGTGATTTCTCTCATGT 58.376 37.500 11.81 0.00 43.36 3.21
161 162 6.064060 TGGTTTGAGTGATTTCTCTCATGTT 58.936 36.000 11.81 0.00 43.36 2.71
162 163 6.547141 TGGTTTGAGTGATTTCTCTCATGTTT 59.453 34.615 11.81 0.00 43.36 2.83
163 164 7.068593 TGGTTTGAGTGATTTCTCTCATGTTTT 59.931 33.333 11.81 0.00 43.36 2.43
164 165 7.922811 GGTTTGAGTGATTTCTCTCATGTTTTT 59.077 33.333 11.81 0.00 43.36 1.94
165 166 8.962111 GTTTGAGTGATTTCTCTCATGTTTTTC 58.038 33.333 11.81 0.00 43.36 2.29
166 167 7.206981 TGAGTGATTTCTCTCATGTTTTTCC 57.793 36.000 7.96 0.00 40.34 3.13
167 168 6.207417 TGAGTGATTTCTCTCATGTTTTTCCC 59.793 38.462 7.96 0.00 40.34 3.97
168 169 5.182001 AGTGATTTCTCTCATGTTTTTCCCG 59.818 40.000 0.00 0.00 0.00 5.14
169 170 5.048713 GTGATTTCTCTCATGTTTTTCCCGT 60.049 40.000 0.00 0.00 0.00 5.28
170 171 4.829064 TTTCTCTCATGTTTTTCCCGTG 57.171 40.909 0.00 0.00 0.00 4.94
171 172 3.485463 TCTCTCATGTTTTTCCCGTGT 57.515 42.857 0.00 0.00 0.00 4.49
172 173 3.815809 TCTCTCATGTTTTTCCCGTGTT 58.184 40.909 0.00 0.00 0.00 3.32
173 174 4.204012 TCTCTCATGTTTTTCCCGTGTTT 58.796 39.130 0.00 0.00 0.00 2.83
174 175 4.274950 TCTCTCATGTTTTTCCCGTGTTTC 59.725 41.667 0.00 0.00 0.00 2.78
175 176 3.316868 TCTCATGTTTTTCCCGTGTTTCC 59.683 43.478 0.00 0.00 0.00 3.13
176 177 2.362717 TCATGTTTTTCCCGTGTTTCCC 59.637 45.455 0.00 0.00 0.00 3.97
177 178 1.112950 TGTTTTTCCCGTGTTTCCCC 58.887 50.000 0.00 0.00 0.00 4.81
178 179 1.342175 TGTTTTTCCCGTGTTTCCCCT 60.342 47.619 0.00 0.00 0.00 4.79
179 180 1.338973 GTTTTTCCCGTGTTTCCCCTC 59.661 52.381 0.00 0.00 0.00 4.30
180 181 0.535553 TTTTCCCGTGTTTCCCCTCG 60.536 55.000 0.00 0.00 0.00 4.63
181 182 1.698067 TTTCCCGTGTTTCCCCTCGT 61.698 55.000 0.00 0.00 0.00 4.18
182 183 2.358247 CCCGTGTTTCCCCTCGTG 60.358 66.667 0.00 0.00 0.00 4.35
183 184 2.424302 CCGTGTTTCCCCTCGTGT 59.576 61.111 0.00 0.00 0.00 4.49
184 185 1.227734 CCGTGTTTCCCCTCGTGTT 60.228 57.895 0.00 0.00 0.00 3.32
185 186 1.226030 CCGTGTTTCCCCTCGTGTTC 61.226 60.000 0.00 0.00 0.00 3.18
186 187 1.226030 CGTGTTTCCCCTCGTGTTCC 61.226 60.000 0.00 0.00 0.00 3.62
187 188 0.108019 GTGTTTCCCCTCGTGTTCCT 59.892 55.000 0.00 0.00 0.00 3.36
188 189 0.395312 TGTTTCCCCTCGTGTTCCTC 59.605 55.000 0.00 0.00 0.00 3.71
189 190 0.669625 GTTTCCCCTCGTGTTCCTCG 60.670 60.000 0.00 0.00 0.00 4.63
190 191 2.444700 TTTCCCCTCGTGTTCCTCGC 62.445 60.000 0.00 0.00 0.00 5.03
196 197 2.125673 CGTGTTCCTCGCGGGATT 60.126 61.111 8.08 0.00 44.66 3.01
197 198 1.740296 CGTGTTCCTCGCGGGATTT 60.740 57.895 8.08 0.00 44.66 2.17
198 199 1.794222 GTGTTCCTCGCGGGATTTG 59.206 57.895 8.08 0.00 44.66 2.32
199 200 2.038269 TGTTCCTCGCGGGATTTGC 61.038 57.895 8.08 4.58 44.66 3.68
200 201 1.745489 GTTCCTCGCGGGATTTGCT 60.745 57.895 8.08 0.00 44.66 3.91
201 202 1.449601 TTCCTCGCGGGATTTGCTC 60.450 57.895 8.08 0.00 44.66 4.26
202 203 2.869503 TTCCTCGCGGGATTTGCTCC 62.870 60.000 8.08 0.00 44.66 4.70
203 204 2.125147 CTCGCGGGATTTGCTCCA 60.125 61.111 0.00 0.00 46.98 3.86
204 205 1.745115 CTCGCGGGATTTGCTCCAA 60.745 57.895 0.00 0.00 46.98 3.53
205 206 1.077787 TCGCGGGATTTGCTCCAAT 60.078 52.632 6.13 0.00 46.98 3.16
206 207 0.679640 TCGCGGGATTTGCTCCAATT 60.680 50.000 6.13 0.00 46.98 2.32
207 208 0.526096 CGCGGGATTTGCTCCAATTG 60.526 55.000 0.00 0.00 46.98 2.32
208 209 0.532115 GCGGGATTTGCTCCAATTGT 59.468 50.000 4.43 0.00 46.98 2.71
209 210 1.736696 GCGGGATTTGCTCCAATTGTG 60.737 52.381 4.43 0.00 46.98 3.33
210 211 1.818060 CGGGATTTGCTCCAATTGTGA 59.182 47.619 4.43 0.76 46.98 3.58
211 212 2.230992 CGGGATTTGCTCCAATTGTGAA 59.769 45.455 4.43 0.00 46.98 3.18
212 213 3.305950 CGGGATTTGCTCCAATTGTGAAA 60.306 43.478 4.43 0.00 46.98 2.69
213 214 4.248058 GGGATTTGCTCCAATTGTGAAAG 58.752 43.478 4.43 0.00 46.98 2.62
214 215 4.021192 GGGATTTGCTCCAATTGTGAAAGA 60.021 41.667 4.43 0.00 46.98 2.52
215 216 5.337813 GGGATTTGCTCCAATTGTGAAAGAT 60.338 40.000 4.43 0.00 46.98 2.40
216 217 5.809051 GGATTTGCTCCAATTGTGAAAGATC 59.191 40.000 4.43 1.81 44.26 2.75
217 218 4.424061 TTGCTCCAATTGTGAAAGATCG 57.576 40.909 4.43 0.00 0.00 3.69
218 219 2.749076 TGCTCCAATTGTGAAAGATCGG 59.251 45.455 4.43 0.00 0.00 4.18
219 220 2.098117 GCTCCAATTGTGAAAGATCGGG 59.902 50.000 4.43 0.00 0.00 5.14
220 221 2.091541 TCCAATTGTGAAAGATCGGGC 58.908 47.619 4.43 0.00 0.00 6.13
221 222 1.818060 CCAATTGTGAAAGATCGGGCA 59.182 47.619 4.43 0.00 0.00 5.36
222 223 2.428171 CCAATTGTGAAAGATCGGGCAT 59.572 45.455 4.43 0.00 0.00 4.40
223 224 3.489738 CCAATTGTGAAAGATCGGGCATC 60.490 47.826 4.43 0.00 0.00 3.91
224 225 2.787473 TTGTGAAAGATCGGGCATCT 57.213 45.000 0.00 0.00 44.56 2.90
225 226 3.904800 TTGTGAAAGATCGGGCATCTA 57.095 42.857 0.00 0.00 41.47 1.98
226 227 3.904800 TGTGAAAGATCGGGCATCTAA 57.095 42.857 0.00 0.00 41.47 2.10
227 228 3.797039 TGTGAAAGATCGGGCATCTAAG 58.203 45.455 0.00 0.00 41.47 2.18
228 229 3.134458 GTGAAAGATCGGGCATCTAAGG 58.866 50.000 0.00 0.00 41.47 2.69
229 230 2.771943 TGAAAGATCGGGCATCTAAGGT 59.228 45.455 0.00 0.00 41.47 3.50
230 231 3.199946 TGAAAGATCGGGCATCTAAGGTT 59.800 43.478 0.00 0.00 41.47 3.50
231 232 3.477210 AAGATCGGGCATCTAAGGTTC 57.523 47.619 0.00 0.00 41.47 3.62
232 233 2.683768 AGATCGGGCATCTAAGGTTCT 58.316 47.619 0.00 0.00 40.41 3.01
233 234 3.845860 AGATCGGGCATCTAAGGTTCTA 58.154 45.455 0.00 0.00 40.41 2.10
234 235 3.574826 AGATCGGGCATCTAAGGTTCTAC 59.425 47.826 0.00 0.00 40.41 2.59
235 236 2.037144 TCGGGCATCTAAGGTTCTACC 58.963 52.381 0.00 0.00 38.99 3.18
236 237 1.070289 CGGGCATCTAAGGTTCTACCC 59.930 57.143 0.00 0.00 39.75 3.69
237 238 2.409570 GGGCATCTAAGGTTCTACCCT 58.590 52.381 0.00 0.00 39.75 4.34
238 239 3.584294 GGGCATCTAAGGTTCTACCCTA 58.416 50.000 0.00 0.00 39.75 3.53
239 240 3.324268 GGGCATCTAAGGTTCTACCCTAC 59.676 52.174 0.00 0.00 39.75 3.18
240 241 3.965347 GGCATCTAAGGTTCTACCCTACA 59.035 47.826 0.00 0.00 39.75 2.74
241 242 4.593634 GGCATCTAAGGTTCTACCCTACAT 59.406 45.833 0.00 0.00 39.75 2.29
242 243 5.279556 GGCATCTAAGGTTCTACCCTACATC 60.280 48.000 0.00 0.00 39.75 3.06
243 244 5.304614 GCATCTAAGGTTCTACCCTACATCA 59.695 44.000 0.00 0.00 39.75 3.07
271 272 0.656259 CTCGGCTATCTCGACAACGA 59.344 55.000 0.00 0.00 46.56 3.85
281 282 1.206578 CGACAACGACACAATGGGC 59.793 57.895 0.00 0.00 42.66 5.36
315 316 2.383527 GCAACTCGTCGGCTTCCTG 61.384 63.158 0.00 0.00 0.00 3.86
335 336 1.936436 TACAGGTAACGCGACCGCAT 61.936 55.000 15.93 4.52 44.88 4.73
348 349 2.430075 CGCATCGTGACACCGTCA 60.430 61.111 0.00 0.00 40.50 4.35
363 364 1.582968 GTCAACGACGCTCCCACTA 59.417 57.895 0.00 0.00 0.00 2.74
379 380 0.182061 ACTACGACTGCGAGGGGATA 59.818 55.000 0.00 0.00 41.64 2.59
423 424 3.071206 AGTCTGACCATCCGCGCT 61.071 61.111 5.56 0.00 0.00 5.92
441 442 1.287730 CTGCTCCTGTTGTCTGCGAC 61.288 60.000 0.00 2.32 0.00 5.19
506 507 8.326765 TGGGTTACATGTATTTGGTAGTCTAT 57.673 34.615 6.36 0.00 0.00 1.98
519 520 8.657074 TTTGGTAGTCTATGATTTGTAATCCG 57.343 34.615 0.00 0.00 0.00 4.18
520 521 6.220930 TGGTAGTCTATGATTTGTAATCCGC 58.779 40.000 0.00 0.00 0.00 5.54
523 524 6.665992 AGTCTATGATTTGTAATCCGCCTA 57.334 37.500 0.00 0.00 0.00 3.93
536 537 2.775890 TCCGCCTACTACCTTATCTCG 58.224 52.381 0.00 0.00 0.00 4.04
539 540 2.743126 CGCCTACTACCTTATCTCGAGG 59.257 54.545 13.56 0.00 40.24 4.63
598 599 0.179089 CTCACCCTCGAGGCTCAATG 60.179 60.000 26.87 16.85 40.58 2.82
602 603 2.301296 CACCCTCGAGGCTCAATGATAT 59.699 50.000 26.87 0.00 40.58 1.63
606 607 4.202202 CCCTCGAGGCTCAATGATATATCC 60.202 50.000 26.87 0.00 0.00 2.59
610 611 4.981054 CGAGGCTCAATGATATATCCATCG 59.019 45.833 15.95 8.32 0.00 3.84
629 631 1.341531 CGTAATCCGCCAATCCTCTCT 59.658 52.381 0.00 0.00 0.00 3.10
635 637 1.548269 CCGCCAATCCTCTCTATCCTC 59.452 57.143 0.00 0.00 0.00 3.71
641 643 5.185056 GCCAATCCTCTCTATCCTCTCTAAC 59.815 48.000 0.00 0.00 0.00 2.34
645 647 7.881912 ATCCTCTCTATCCTCTCTAACAGTA 57.118 40.000 0.00 0.00 0.00 2.74
766 768 0.906066 TATTTACCACGCCTGCTGGA 59.094 50.000 14.77 0.00 34.57 3.86
771 773 4.694233 CACGCCTGCTGGAGCTGT 62.694 66.667 14.77 2.74 42.66 4.40
816 818 3.133014 GCTGGAGAGAGCGCCATA 58.867 61.111 2.29 0.00 43.32 2.74
819 821 0.031857 CTGGAGAGAGCGCCATACTG 59.968 60.000 2.29 0.00 43.32 2.74
829 831 3.509266 GCCATACTGCGCGTAAAAG 57.491 52.632 8.43 3.20 0.00 2.27
832 834 2.159626 GCCATACTGCGCGTAAAAGAAA 60.160 45.455 8.43 0.00 0.00 2.52
833 835 3.668491 GCCATACTGCGCGTAAAAGAAAA 60.668 43.478 8.43 0.00 0.00 2.29
834 836 4.468643 CCATACTGCGCGTAAAAGAAAAA 58.531 39.130 8.43 0.00 0.00 1.94
900 2961 8.865090 AGTGGAAGTAGTATAGAAATGATCCTG 58.135 37.037 0.00 0.00 0.00 3.86
901 2962 8.861086 GTGGAAGTAGTATAGAAATGATCCTGA 58.139 37.037 0.00 0.00 0.00 3.86
902 2963 9.607333 TGGAAGTAGTATAGAAATGATCCTGAT 57.393 33.333 0.00 0.00 0.00 2.90
903 2964 9.868277 GGAAGTAGTATAGAAATGATCCTGATG 57.132 37.037 0.00 0.00 0.00 3.07
904 2965 9.364989 GAAGTAGTATAGAAATGATCCTGATGC 57.635 37.037 0.00 0.00 0.00 3.91
951 3012 1.935933 CGACTTTATTCCACCTCCCG 58.064 55.000 0.00 0.00 0.00 5.14
952 3013 1.206371 CGACTTTATTCCACCTCCCGT 59.794 52.381 0.00 0.00 0.00 5.28
953 3014 2.354403 CGACTTTATTCCACCTCCCGTT 60.354 50.000 0.00 0.00 0.00 4.44
954 3015 3.268330 GACTTTATTCCACCTCCCGTTC 58.732 50.000 0.00 0.00 0.00 3.95
955 3016 2.640826 ACTTTATTCCACCTCCCGTTCA 59.359 45.455 0.00 0.00 0.00 3.18
956 3017 3.073356 ACTTTATTCCACCTCCCGTTCAA 59.927 43.478 0.00 0.00 0.00 2.69
1083 3144 0.734889 CTTGCACGGCCTATTTCCTG 59.265 55.000 0.00 0.00 0.00 3.86
1095 3156 2.137177 ATTTCCTGTCCACCCACCCG 62.137 60.000 0.00 0.00 0.00 5.28
1512 3575 4.980805 GGAGCGCGTGGTGGTCAA 62.981 66.667 4.91 0.00 41.55 3.18
2033 4098 6.892658 CTGCATACAGTAGAGTAGAAGGAT 57.107 41.667 0.00 0.00 39.22 3.24
2034 4099 7.283625 CTGCATACAGTAGAGTAGAAGGATT 57.716 40.000 0.00 0.00 39.22 3.01
2035 4100 7.367285 CTGCATACAGTAGAGTAGAAGGATTC 58.633 42.308 0.00 0.00 41.59 2.52
2207 4296 2.644212 CCGTCTGAGCTCCAGCAGT 61.644 63.158 12.15 0.00 45.16 4.40
2554 5523 3.036429 GCGGCAGAGGAGATGGGTT 62.036 63.158 0.00 0.00 0.00 4.11
3104 6100 0.031010 AGTGATAGGTGGGGGAGGTC 60.031 60.000 0.00 0.00 0.00 3.85
3320 6320 1.593209 GCGACAAGTGGTCCGTTCA 60.593 57.895 0.00 0.00 43.95 3.18
3437 6437 3.550639 CGTGTAAGGGTAGTGTTGTTCGA 60.551 47.826 0.00 0.00 0.00 3.71
3506 6592 1.339631 CCCCATGTTGTTCTTCCGCTA 60.340 52.381 0.00 0.00 0.00 4.26
3581 6667 2.250494 AAAAACAGAGGAGGGCCCA 58.750 52.632 27.56 0.00 37.41 5.36
3582 6668 0.113190 AAAAACAGAGGAGGGCCCAG 59.887 55.000 27.56 8.70 37.41 4.45
3626 6712 1.077501 CCTCCCGTGCACCAATGAT 60.078 57.895 12.15 0.00 0.00 2.45
3746 6832 2.334653 CTCGCCGAGCTCATCCTC 59.665 66.667 15.40 0.00 0.00 3.71
3773 6859 2.744202 ACACGCCAAGATTGTTGATCTC 59.256 45.455 0.00 0.00 44.41 2.75
3856 6942 2.601314 CGCGGTTTGTTTCGATCTGATA 59.399 45.455 0.00 0.00 0.00 2.15
3919 7005 2.606751 CCTGTCCGAGGGGATATACT 57.393 55.000 0.00 0.00 46.14 2.12
3920 7006 3.733883 CCTGTCCGAGGGGATATACTA 57.266 52.381 0.00 0.00 46.14 1.82
3964 7051 2.717639 ACCTTCAACACTTGCTGTCT 57.282 45.000 0.00 0.00 30.29 3.41
4070 7163 4.799428 CCAAATGTACCAACGAACGTTTTT 59.201 37.500 9.87 4.91 36.00 1.94
4183 7276 2.979678 TCAAACACTAAGGGCTCCTTCT 59.020 45.455 9.46 0.00 43.57 2.85
4327 7457 7.662897 TCCTTTGTTTTTCCTATAACGCAATT 58.337 30.769 0.00 0.00 0.00 2.32
4399 7529 4.201851 ACATTTTGAGAATCCTGCGAATCG 60.202 41.667 0.00 0.00 0.00 3.34
4419 7549 3.199946 TCGAAGAGGCCCTGAAACATAAT 59.800 43.478 0.00 0.00 0.00 1.28
4487 7617 3.055094 ACGATACAACCTGCTCCAGAATT 60.055 43.478 0.00 0.00 32.44 2.17
4709 7839 2.781595 TTTCCCAGCTCGGTTCTCGC 62.782 60.000 0.00 0.00 39.05 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.906066 GAGGTCTTGAGGGGTCTTCC 59.094 60.000 0.00 0.00 0.00 3.46
17 18 0.906066 GGAGGTCTTGAGGGGTCTTC 59.094 60.000 0.00 0.00 0.00 2.87
18 19 0.494095 AGGAGGTCTTGAGGGGTCTT 59.506 55.000 0.00 0.00 0.00 3.01
19 20 0.041982 GAGGAGGTCTTGAGGGGTCT 59.958 60.000 0.00 0.00 0.00 3.85
20 21 0.252284 TGAGGAGGTCTTGAGGGGTC 60.252 60.000 0.00 0.00 0.00 4.46
21 22 0.545548 GTGAGGAGGTCTTGAGGGGT 60.546 60.000 0.00 0.00 0.00 4.95
22 23 1.608717 CGTGAGGAGGTCTTGAGGGG 61.609 65.000 0.00 0.00 0.00 4.79
23 24 1.893786 CGTGAGGAGGTCTTGAGGG 59.106 63.158 0.00 0.00 0.00 4.30
36 37 2.447244 AGCAAGTTCTTCTCCGTGAG 57.553 50.000 0.00 0.00 0.00 3.51
37 38 2.891580 AGTAGCAAGTTCTTCTCCGTGA 59.108 45.455 0.00 0.00 0.00 4.35
38 39 3.305398 AGTAGCAAGTTCTTCTCCGTG 57.695 47.619 0.00 0.00 0.00 4.94
39 40 3.069729 ACAAGTAGCAAGTTCTTCTCCGT 59.930 43.478 0.00 0.00 0.00 4.69
40 41 3.654414 ACAAGTAGCAAGTTCTTCTCCG 58.346 45.455 0.00 0.00 0.00 4.63
41 42 5.517054 CGATACAAGTAGCAAGTTCTTCTCC 59.483 44.000 0.00 0.00 0.00 3.71
42 43 5.004916 GCGATACAAGTAGCAAGTTCTTCTC 59.995 44.000 0.00 0.00 0.00 2.87
43 44 4.865365 GCGATACAAGTAGCAAGTTCTTCT 59.135 41.667 0.00 0.00 0.00 2.85
44 45 4.033014 GGCGATACAAGTAGCAAGTTCTTC 59.967 45.833 0.00 0.00 0.00 2.87
45 46 3.933332 GGCGATACAAGTAGCAAGTTCTT 59.067 43.478 0.00 0.00 0.00 2.52
46 47 3.522553 GGCGATACAAGTAGCAAGTTCT 58.477 45.455 0.00 0.00 0.00 3.01
47 48 2.608090 GGGCGATACAAGTAGCAAGTTC 59.392 50.000 0.00 0.00 0.00 3.01
48 49 2.629051 GGGCGATACAAGTAGCAAGTT 58.371 47.619 0.00 0.00 0.00 2.66
49 50 1.134491 GGGGCGATACAAGTAGCAAGT 60.134 52.381 0.00 0.00 0.00 3.16
50 51 1.139058 AGGGGCGATACAAGTAGCAAG 59.861 52.381 0.00 0.00 0.00 4.01
51 52 1.200519 AGGGGCGATACAAGTAGCAA 58.799 50.000 0.00 0.00 0.00 3.91
52 53 1.134521 CAAGGGGCGATACAAGTAGCA 60.135 52.381 0.00 0.00 0.00 3.49
53 54 1.134491 ACAAGGGGCGATACAAGTAGC 60.134 52.381 0.00 0.00 0.00 3.58
54 55 2.936498 CAACAAGGGGCGATACAAGTAG 59.064 50.000 0.00 0.00 0.00 2.57
55 56 2.303600 ACAACAAGGGGCGATACAAGTA 59.696 45.455 0.00 0.00 0.00 2.24
56 57 1.073284 ACAACAAGGGGCGATACAAGT 59.927 47.619 0.00 0.00 0.00 3.16
57 58 1.821216 ACAACAAGGGGCGATACAAG 58.179 50.000 0.00 0.00 0.00 3.16
58 59 2.156098 GAACAACAAGGGGCGATACAA 58.844 47.619 0.00 0.00 0.00 2.41
59 60 1.816074 GAACAACAAGGGGCGATACA 58.184 50.000 0.00 0.00 0.00 2.29
60 61 0.725117 CGAACAACAAGGGGCGATAC 59.275 55.000 0.00 0.00 0.00 2.24
61 62 0.322322 ACGAACAACAAGGGGCGATA 59.678 50.000 0.00 0.00 0.00 2.92
62 63 1.072505 ACGAACAACAAGGGGCGAT 59.927 52.632 0.00 0.00 0.00 4.58
63 64 1.890041 CACGAACAACAAGGGGCGA 60.890 57.895 0.00 0.00 0.00 5.54
64 65 2.637025 CACGAACAACAAGGGGCG 59.363 61.111 0.00 0.00 0.00 6.13
65 66 0.893727 ATCCACGAACAACAAGGGGC 60.894 55.000 0.00 0.00 0.00 5.80
66 67 1.165270 GATCCACGAACAACAAGGGG 58.835 55.000 0.00 0.00 0.00 4.79
67 68 1.890876 TGATCCACGAACAACAAGGG 58.109 50.000 0.00 0.00 0.00 3.95
68 69 2.813754 ACATGATCCACGAACAACAAGG 59.186 45.455 0.00 0.00 0.00 3.61
69 70 5.582269 AGATACATGATCCACGAACAACAAG 59.418 40.000 0.00 0.00 34.80 3.16
70 71 5.487433 AGATACATGATCCACGAACAACAA 58.513 37.500 0.00 0.00 34.80 2.83
71 72 5.084818 AGATACATGATCCACGAACAACA 57.915 39.130 0.00 0.00 34.80 3.33
72 73 5.352284 AGAGATACATGATCCACGAACAAC 58.648 41.667 0.00 0.00 34.80 3.32
73 74 5.598416 AGAGATACATGATCCACGAACAA 57.402 39.130 0.00 0.00 34.80 2.83
74 75 5.598416 AAGAGATACATGATCCACGAACA 57.402 39.130 0.00 0.00 34.80 3.18
75 76 5.812642 ACAAAGAGATACATGATCCACGAAC 59.187 40.000 0.00 0.00 34.80 3.95
76 77 5.812127 CACAAAGAGATACATGATCCACGAA 59.188 40.000 0.00 0.00 34.80 3.85
77 78 5.105351 ACACAAAGAGATACATGATCCACGA 60.105 40.000 0.00 0.00 34.80 4.35
78 79 5.111989 ACACAAAGAGATACATGATCCACG 58.888 41.667 0.00 0.00 34.80 4.94
79 80 6.992063 AACACAAAGAGATACATGATCCAC 57.008 37.500 0.00 0.00 34.80 4.02
80 81 6.313658 CGAAACACAAAGAGATACATGATCCA 59.686 38.462 0.00 0.00 34.80 3.41
81 82 6.535150 TCGAAACACAAAGAGATACATGATCC 59.465 38.462 0.00 0.00 34.80 3.36
82 83 7.254252 CCTCGAAACACAAAGAGATACATGATC 60.254 40.741 0.00 0.00 32.84 2.92
83 84 6.536582 CCTCGAAACACAAAGAGATACATGAT 59.463 38.462 0.00 0.00 32.84 2.45
84 85 5.869344 CCTCGAAACACAAAGAGATACATGA 59.131 40.000 0.00 0.00 32.84 3.07
85 86 5.869344 TCCTCGAAACACAAAGAGATACATG 59.131 40.000 0.00 0.00 32.84 3.21
86 87 6.037786 TCCTCGAAACACAAAGAGATACAT 57.962 37.500 0.00 0.00 32.84 2.29
87 88 5.462530 TCCTCGAAACACAAAGAGATACA 57.537 39.130 0.00 0.00 32.84 2.29
88 89 6.334202 AGATCCTCGAAACACAAAGAGATAC 58.666 40.000 0.00 0.00 32.84 2.24
89 90 6.531503 AGATCCTCGAAACACAAAGAGATA 57.468 37.500 0.00 0.00 32.84 1.98
90 91 5.413309 AGATCCTCGAAACACAAAGAGAT 57.587 39.130 0.00 0.00 32.84 2.75
91 92 4.873746 AGATCCTCGAAACACAAAGAGA 57.126 40.909 0.00 0.00 32.84 3.10
92 93 4.564769 GCTAGATCCTCGAAACACAAAGAG 59.435 45.833 0.00 0.00 0.00 2.85
93 94 4.495422 GCTAGATCCTCGAAACACAAAGA 58.505 43.478 0.00 0.00 0.00 2.52
94 95 3.304559 CGCTAGATCCTCGAAACACAAAG 59.695 47.826 0.00 0.00 0.00 2.77
95 96 3.250744 CGCTAGATCCTCGAAACACAAA 58.749 45.455 0.00 0.00 0.00 2.83
96 97 2.876091 CGCTAGATCCTCGAAACACAA 58.124 47.619 0.00 0.00 0.00 3.33
97 98 1.469251 GCGCTAGATCCTCGAAACACA 60.469 52.381 0.00 0.00 0.00 3.72
98 99 1.201343 GCGCTAGATCCTCGAAACAC 58.799 55.000 0.00 0.00 0.00 3.32
99 100 0.815095 TGCGCTAGATCCTCGAAACA 59.185 50.000 9.73 0.00 0.00 2.83
100 101 1.789464 CATGCGCTAGATCCTCGAAAC 59.211 52.381 9.73 0.00 0.00 2.78
101 102 1.409064 ACATGCGCTAGATCCTCGAAA 59.591 47.619 9.73 0.00 0.00 3.46
102 103 1.032794 ACATGCGCTAGATCCTCGAA 58.967 50.000 9.73 0.00 0.00 3.71
103 104 0.312102 CACATGCGCTAGATCCTCGA 59.688 55.000 9.73 0.00 0.00 4.04
104 105 0.031314 ACACATGCGCTAGATCCTCG 59.969 55.000 9.73 0.00 0.00 4.63
105 106 3.371102 TTACACATGCGCTAGATCCTC 57.629 47.619 9.73 0.00 0.00 3.71
106 107 3.612717 CGATTACACATGCGCTAGATCCT 60.613 47.826 9.73 0.00 0.00 3.24
107 108 2.663602 CGATTACACATGCGCTAGATCC 59.336 50.000 9.73 0.00 0.00 3.36
108 109 3.565516 TCGATTACACATGCGCTAGATC 58.434 45.455 9.73 1.98 0.00 2.75
109 110 3.643159 TCGATTACACATGCGCTAGAT 57.357 42.857 9.73 0.00 0.00 1.98
110 111 3.430333 TTCGATTACACATGCGCTAGA 57.570 42.857 9.73 0.00 0.00 2.43
111 112 6.128822 ACAATATTCGATTACACATGCGCTAG 60.129 38.462 9.73 3.08 0.00 3.42
112 113 5.694458 ACAATATTCGATTACACATGCGCTA 59.306 36.000 9.73 0.00 0.00 4.26
113 114 4.511454 ACAATATTCGATTACACATGCGCT 59.489 37.500 9.73 0.00 0.00 5.92
114 115 4.772434 ACAATATTCGATTACACATGCGC 58.228 39.130 0.00 0.00 0.00 6.09
115 116 5.620822 CCAACAATATTCGATTACACATGCG 59.379 40.000 0.00 0.00 0.00 4.73
116 117 6.494842 ACCAACAATATTCGATTACACATGC 58.505 36.000 0.00 0.00 0.00 4.06
117 118 8.797215 CAAACCAACAATATTCGATTACACATG 58.203 33.333 0.00 0.00 0.00 3.21
118 119 8.735315 TCAAACCAACAATATTCGATTACACAT 58.265 29.630 0.00 0.00 0.00 3.21
119 120 8.100508 TCAAACCAACAATATTCGATTACACA 57.899 30.769 0.00 0.00 0.00 3.72
120 121 8.234546 ACTCAAACCAACAATATTCGATTACAC 58.765 33.333 0.00 0.00 0.00 2.90
121 122 8.233868 CACTCAAACCAACAATATTCGATTACA 58.766 33.333 0.00 0.00 0.00 2.41
122 123 8.447833 TCACTCAAACCAACAATATTCGATTAC 58.552 33.333 0.00 0.00 0.00 1.89
123 124 8.554835 TCACTCAAACCAACAATATTCGATTA 57.445 30.769 0.00 0.00 0.00 1.75
124 125 7.447374 TCACTCAAACCAACAATATTCGATT 57.553 32.000 0.00 0.00 0.00 3.34
125 126 7.630242 ATCACTCAAACCAACAATATTCGAT 57.370 32.000 0.00 0.00 0.00 3.59
126 127 7.447374 AATCACTCAAACCAACAATATTCGA 57.553 32.000 0.00 0.00 0.00 3.71
127 128 8.023128 AGAAATCACTCAAACCAACAATATTCG 58.977 33.333 0.00 0.00 0.00 3.34
128 129 9.346725 GAGAAATCACTCAAACCAACAATATTC 57.653 33.333 0.00 0.00 36.95 1.75
129 130 9.082313 AGAGAAATCACTCAAACCAACAATATT 57.918 29.630 0.00 0.00 39.14 1.28
130 131 8.641498 AGAGAAATCACTCAAACCAACAATAT 57.359 30.769 0.00 0.00 39.14 1.28
131 132 7.719193 TGAGAGAAATCACTCAAACCAACAATA 59.281 33.333 7.91 0.00 39.88 1.90
132 133 6.547141 TGAGAGAAATCACTCAAACCAACAAT 59.453 34.615 7.91 0.00 39.88 2.71
133 134 5.885352 TGAGAGAAATCACTCAAACCAACAA 59.115 36.000 7.91 0.00 39.88 2.83
134 135 5.436175 TGAGAGAAATCACTCAAACCAACA 58.564 37.500 7.91 0.00 39.88 3.33
135 136 6.016777 ACATGAGAGAAATCACTCAAACCAAC 60.017 38.462 13.28 0.00 44.42 3.77
136 137 6.064060 ACATGAGAGAAATCACTCAAACCAA 58.936 36.000 13.28 0.00 44.42 3.67
137 138 5.624159 ACATGAGAGAAATCACTCAAACCA 58.376 37.500 13.28 0.00 44.42 3.67
138 139 6.566197 AACATGAGAGAAATCACTCAAACC 57.434 37.500 13.28 0.00 44.42 3.27
139 140 8.862550 AAAAACATGAGAGAAATCACTCAAAC 57.137 30.769 13.28 0.00 44.42 2.93
140 141 8.137437 GGAAAAACATGAGAGAAATCACTCAAA 58.863 33.333 13.28 0.00 44.42 2.69
141 142 7.255590 GGGAAAAACATGAGAGAAATCACTCAA 60.256 37.037 13.28 0.18 44.42 3.02
142 143 6.207417 GGGAAAAACATGAGAGAAATCACTCA 59.793 38.462 11.97 11.97 45.10 3.41
143 144 6.616017 GGGAAAAACATGAGAGAAATCACTC 58.384 40.000 0.00 1.47 37.19 3.51
144 145 5.182001 CGGGAAAAACATGAGAGAAATCACT 59.818 40.000 0.00 0.00 30.46 3.41
145 146 5.048713 ACGGGAAAAACATGAGAGAAATCAC 60.049 40.000 0.00 0.00 30.46 3.06
146 147 5.048782 CACGGGAAAAACATGAGAGAAATCA 60.049 40.000 0.00 0.00 0.00 2.57
147 148 5.048713 ACACGGGAAAAACATGAGAGAAATC 60.049 40.000 0.00 0.00 0.00 2.17
148 149 4.827284 ACACGGGAAAAACATGAGAGAAAT 59.173 37.500 0.00 0.00 0.00 2.17
149 150 4.204012 ACACGGGAAAAACATGAGAGAAA 58.796 39.130 0.00 0.00 0.00 2.52
150 151 3.815809 ACACGGGAAAAACATGAGAGAA 58.184 40.909 0.00 0.00 0.00 2.87
151 152 3.485463 ACACGGGAAAAACATGAGAGA 57.515 42.857 0.00 0.00 0.00 3.10
152 153 4.537015 GAAACACGGGAAAAACATGAGAG 58.463 43.478 0.00 0.00 0.00 3.20
153 154 3.316868 GGAAACACGGGAAAAACATGAGA 59.683 43.478 0.00 0.00 0.00 3.27
154 155 3.552068 GGGAAACACGGGAAAAACATGAG 60.552 47.826 0.00 0.00 0.00 2.90
155 156 2.362717 GGGAAACACGGGAAAAACATGA 59.637 45.455 0.00 0.00 0.00 3.07
156 157 2.547007 GGGGAAACACGGGAAAAACATG 60.547 50.000 0.00 0.00 0.00 3.21
157 158 1.689813 GGGGAAACACGGGAAAAACAT 59.310 47.619 0.00 0.00 0.00 2.71
158 159 1.112950 GGGGAAACACGGGAAAAACA 58.887 50.000 0.00 0.00 0.00 2.83
159 160 1.338973 GAGGGGAAACACGGGAAAAAC 59.661 52.381 0.00 0.00 40.46 2.43
160 161 1.694844 GAGGGGAAACACGGGAAAAA 58.305 50.000 0.00 0.00 40.46 1.94
161 162 0.535553 CGAGGGGAAACACGGGAAAA 60.536 55.000 0.00 0.00 40.46 2.29
162 163 1.071814 CGAGGGGAAACACGGGAAA 59.928 57.895 0.00 0.00 40.46 3.13
163 164 2.142104 ACGAGGGGAAACACGGGAA 61.142 57.895 0.00 0.00 40.46 3.97
164 165 2.524887 ACGAGGGGAAACACGGGA 60.525 61.111 0.00 0.00 40.46 5.14
165 166 2.358247 CACGAGGGGAAACACGGG 60.358 66.667 0.00 0.00 40.46 5.28
166 167 1.226030 GAACACGAGGGGAAACACGG 61.226 60.000 0.00 0.00 40.46 4.94
167 168 1.226030 GGAACACGAGGGGAAACACG 61.226 60.000 0.00 0.00 40.46 4.49
168 169 0.108019 AGGAACACGAGGGGAAACAC 59.892 55.000 0.00 0.00 0.00 3.32
169 170 0.395312 GAGGAACACGAGGGGAAACA 59.605 55.000 0.00 0.00 0.00 2.83
170 171 3.228499 GAGGAACACGAGGGGAAAC 57.772 57.895 0.00 0.00 0.00 2.78
193 194 5.514204 CGATCTTTCACAATTGGAGCAAATC 59.486 40.000 10.83 5.41 0.00 2.17
194 195 5.404946 CGATCTTTCACAATTGGAGCAAAT 58.595 37.500 10.83 0.00 0.00 2.32
195 196 4.321156 CCGATCTTTCACAATTGGAGCAAA 60.321 41.667 10.83 2.32 0.00 3.68
196 197 3.191162 CCGATCTTTCACAATTGGAGCAA 59.809 43.478 10.83 0.00 0.00 3.91
197 198 2.749076 CCGATCTTTCACAATTGGAGCA 59.251 45.455 10.83 0.00 0.00 4.26
198 199 2.098117 CCCGATCTTTCACAATTGGAGC 59.902 50.000 10.83 0.00 0.00 4.70
199 200 2.098117 GCCCGATCTTTCACAATTGGAG 59.902 50.000 10.83 1.96 0.00 3.86
200 201 2.091541 GCCCGATCTTTCACAATTGGA 58.908 47.619 10.83 1.40 0.00 3.53
201 202 1.818060 TGCCCGATCTTTCACAATTGG 59.182 47.619 10.83 0.00 0.00 3.16
202 203 3.379372 AGATGCCCGATCTTTCACAATTG 59.621 43.478 3.24 3.24 38.35 2.32
203 204 3.624777 AGATGCCCGATCTTTCACAATT 58.375 40.909 0.00 0.00 38.35 2.32
204 205 3.287867 AGATGCCCGATCTTTCACAAT 57.712 42.857 0.00 0.00 38.35 2.71
205 206 2.787473 AGATGCCCGATCTTTCACAA 57.213 45.000 0.00 0.00 38.35 3.33
206 207 3.432186 CCTTAGATGCCCGATCTTTCACA 60.432 47.826 0.00 0.00 41.94 3.58
207 208 3.134458 CCTTAGATGCCCGATCTTTCAC 58.866 50.000 0.00 0.00 41.94 3.18
208 209 2.771943 ACCTTAGATGCCCGATCTTTCA 59.228 45.455 0.00 0.00 41.94 2.69
209 210 3.477210 ACCTTAGATGCCCGATCTTTC 57.523 47.619 0.00 0.00 41.94 2.62
210 211 3.456277 AGAACCTTAGATGCCCGATCTTT 59.544 43.478 0.00 0.00 41.94 2.52
211 212 3.041946 AGAACCTTAGATGCCCGATCTT 58.958 45.455 0.00 0.00 41.94 2.40
212 213 2.683768 AGAACCTTAGATGCCCGATCT 58.316 47.619 0.00 0.00 44.24 2.75
213 214 3.306156 GGTAGAACCTTAGATGCCCGATC 60.306 52.174 0.00 0.00 34.73 3.69
214 215 2.633481 GGTAGAACCTTAGATGCCCGAT 59.367 50.000 0.00 0.00 34.73 4.18
215 216 2.037144 GGTAGAACCTTAGATGCCCGA 58.963 52.381 0.00 0.00 34.73 5.14
216 217 1.070289 GGGTAGAACCTTAGATGCCCG 59.930 57.143 0.00 0.00 38.64 6.13
217 218 2.409570 AGGGTAGAACCTTAGATGCCC 58.590 52.381 0.00 0.00 37.69 5.36
218 219 3.965347 TGTAGGGTAGAACCTTAGATGCC 59.035 47.826 0.00 0.00 42.09 4.40
219 220 5.304614 TGATGTAGGGTAGAACCTTAGATGC 59.695 44.000 3.08 0.00 42.09 3.91
220 221 6.239345 GGTGATGTAGGGTAGAACCTTAGATG 60.239 46.154 3.08 0.00 42.09 2.90
221 222 5.839606 GGTGATGTAGGGTAGAACCTTAGAT 59.160 44.000 0.00 0.00 42.09 1.98
222 223 5.206587 GGTGATGTAGGGTAGAACCTTAGA 58.793 45.833 0.00 0.00 42.09 2.10
223 224 4.344390 GGGTGATGTAGGGTAGAACCTTAG 59.656 50.000 0.00 0.00 42.09 2.18
224 225 4.264941 TGGGTGATGTAGGGTAGAACCTTA 60.265 45.833 0.00 0.00 42.09 2.69
225 226 3.113043 GGGTGATGTAGGGTAGAACCTT 58.887 50.000 0.00 0.00 42.09 3.50
226 227 2.045326 TGGGTGATGTAGGGTAGAACCT 59.955 50.000 0.00 0.00 44.75 3.50
227 228 2.169978 GTGGGTGATGTAGGGTAGAACC 59.830 54.545 0.00 0.00 37.60 3.62
228 229 2.159142 CGTGGGTGATGTAGGGTAGAAC 60.159 54.545 0.00 0.00 0.00 3.01
229 230 2.104967 CGTGGGTGATGTAGGGTAGAA 58.895 52.381 0.00 0.00 0.00 2.10
230 231 1.771565 CGTGGGTGATGTAGGGTAGA 58.228 55.000 0.00 0.00 0.00 2.59
231 232 0.104304 GCGTGGGTGATGTAGGGTAG 59.896 60.000 0.00 0.00 0.00 3.18
232 233 0.324923 AGCGTGGGTGATGTAGGGTA 60.325 55.000 0.00 0.00 0.00 3.69
233 234 1.612442 AGCGTGGGTGATGTAGGGT 60.612 57.895 0.00 0.00 0.00 4.34
234 235 1.144057 GAGCGTGGGTGATGTAGGG 59.856 63.158 0.00 0.00 0.00 3.53
235 236 0.103208 GAGAGCGTGGGTGATGTAGG 59.897 60.000 0.00 0.00 0.00 3.18
236 237 0.248661 CGAGAGCGTGGGTGATGTAG 60.249 60.000 0.00 0.00 0.00 2.74
237 238 1.663379 CCGAGAGCGTGGGTGATGTA 61.663 60.000 0.00 0.00 35.23 2.29
238 239 2.573869 CGAGAGCGTGGGTGATGT 59.426 61.111 0.00 0.00 0.00 3.06
239 240 2.202797 CCGAGAGCGTGGGTGATG 60.203 66.667 0.00 0.00 35.23 3.07
240 241 4.148825 GCCGAGAGCGTGGGTGAT 62.149 66.667 0.00 0.00 35.23 3.06
271 272 1.134401 CGAGGTGATAGCCCATTGTGT 60.134 52.381 0.00 0.00 0.00 3.72
281 282 1.929836 GTTGCTCAAGCGAGGTGATAG 59.070 52.381 0.00 0.00 45.83 2.08
315 316 2.154569 GCGGTCGCGTTACCTGTAC 61.155 63.158 14.31 0.00 37.39 2.90
335 336 1.298563 GTCGTTGACGGTGTCACGA 60.299 57.895 15.42 15.42 42.60 4.35
348 349 1.968017 TCGTAGTGGGAGCGTCGTT 60.968 57.895 0.00 0.00 0.00 3.85
360 361 0.182061 TATCCCCTCGCAGTCGTAGT 59.818 55.000 0.00 0.00 36.96 2.73
363 364 0.467474 TGATATCCCCTCGCAGTCGT 60.467 55.000 0.00 0.00 36.96 4.34
388 389 0.033228 CTGGAGAGAATAGCAGCCGG 59.967 60.000 0.00 0.00 0.00 6.13
423 424 3.137687 TCGCAGACAACAGGAGCA 58.862 55.556 0.00 0.00 0.00 4.26
453 454 0.981183 TCTAACATCCACCCGCAGTT 59.019 50.000 0.00 0.00 0.00 3.16
497 498 5.638234 GGCGGATTACAAATCATAGACTACC 59.362 44.000 2.36 0.00 0.00 3.18
501 502 6.456501 AGTAGGCGGATTACAAATCATAGAC 58.543 40.000 2.36 0.00 0.00 2.59
506 507 4.652421 AGGTAGTAGGCGGATTACAAATCA 59.348 41.667 2.36 0.00 0.00 2.57
519 520 4.004982 CTCCTCGAGATAAGGTAGTAGGC 58.995 52.174 15.71 0.00 35.29 3.93
520 521 5.484715 CTCTCCTCGAGATAAGGTAGTAGG 58.515 50.000 15.71 0.00 42.62 3.18
523 524 3.497227 GCCTCTCCTCGAGATAAGGTAGT 60.497 52.174 15.71 0.00 42.62 2.73
563 564 7.940688 TCGAGGGTGAGTATATATTGAGTACAA 59.059 37.037 0.00 0.00 40.42 2.41
610 611 4.382147 GGATAGAGAGGATTGGCGGATTAC 60.382 50.000 0.00 0.00 0.00 1.89
694 696 8.474025 ACATTTCACACTCAAAATAGAACCAAA 58.526 29.630 0.00 0.00 0.00 3.28
739 741 1.490621 GCGTGGTAAATATACGGCGT 58.509 50.000 19.64 19.64 38.20 5.68
742 744 1.796459 GCAGGCGTGGTAAATATACGG 59.204 52.381 8.72 0.00 38.20 4.02
755 757 3.890936 GAACAGCTCCAGCAGGCGT 62.891 63.158 0.48 0.00 45.16 5.68
779 781 2.202518 CCGCTGCAAAAGATGGCG 60.203 61.111 7.22 7.22 44.48 5.69
780 782 2.507769 GCCGCTGCAAAAGATGGC 60.508 61.111 0.00 0.00 40.45 4.40
781 783 2.182537 GGCCGCTGCAAAAGATGG 59.817 61.111 1.55 0.00 40.13 3.51
832 834 2.058057 CGCAGCGCCAAAATAGTTTTT 58.942 42.857 2.29 0.00 35.41 1.94
833 835 1.696988 CGCAGCGCCAAAATAGTTTT 58.303 45.000 2.29 0.00 0.00 2.43
834 836 3.399879 CGCAGCGCCAAAATAGTTT 57.600 47.368 2.29 0.00 0.00 2.66
856 2810 1.742900 CTATGTGCTTCCGACGCGTG 61.743 60.000 20.70 9.33 0.00 5.34
857 2811 1.516386 CTATGTGCTTCCGACGCGT 60.516 57.895 13.85 13.85 0.00 6.01
858 2812 1.516386 ACTATGTGCTTCCGACGCG 60.516 57.895 3.53 3.53 0.00 6.01
861 2815 2.271800 CTTCCACTATGTGCTTCCGAC 58.728 52.381 0.00 0.00 31.34 4.79
863 2817 2.386661 ACTTCCACTATGTGCTTCCG 57.613 50.000 0.00 0.00 31.34 4.30
864 2818 4.473477 ACTACTTCCACTATGTGCTTCC 57.527 45.455 0.00 0.00 31.34 3.46
865 2819 8.167605 TCTATACTACTTCCACTATGTGCTTC 57.832 38.462 0.00 0.00 31.34 3.86
904 2965 1.969923 TCAATCCCCTTTGCAAACCTG 59.030 47.619 8.05 0.00 0.00 4.00
951 3012 1.533129 GCGGGTGTGTTGAACTTGAAC 60.533 52.381 0.00 0.00 0.00 3.18
952 3013 0.736053 GCGGGTGTGTTGAACTTGAA 59.264 50.000 0.00 0.00 0.00 2.69
953 3014 0.393132 TGCGGGTGTGTTGAACTTGA 60.393 50.000 0.00 0.00 0.00 3.02
954 3015 0.029300 CTGCGGGTGTGTTGAACTTG 59.971 55.000 0.00 0.00 0.00 3.16
955 3016 1.724582 GCTGCGGGTGTGTTGAACTT 61.725 55.000 0.00 0.00 0.00 2.66
956 3017 2.186826 GCTGCGGGTGTGTTGAACT 61.187 57.895 0.00 0.00 0.00 3.01
989 3050 2.511373 TGGCCATGATGTCGTCGC 60.511 61.111 0.00 0.00 0.00 5.19
1479 3542 4.873129 CCACCTCGCCGATGACCG 62.873 72.222 0.00 0.00 38.18 4.79
1731 3794 2.892425 CCGGGTCGAGCATCTTGC 60.892 66.667 17.59 0.00 45.46 4.01
2010 4075 7.230510 AGAATCCTTCTACTCTACTGTATGCAG 59.769 40.741 9.50 9.50 42.47 4.41
2011 4076 7.063593 AGAATCCTTCTACTCTACTGTATGCA 58.936 38.462 0.00 0.00 38.49 3.96
2012 4077 7.519032 AGAATCCTTCTACTCTACTGTATGC 57.481 40.000 0.00 0.00 38.49 3.14
2013 4078 9.743057 CAAAGAATCCTTCTACTCTACTGTATG 57.257 37.037 0.00 0.00 39.61 2.39
2014 4079 8.919145 CCAAAGAATCCTTCTACTCTACTGTAT 58.081 37.037 0.00 0.00 39.61 2.29
2015 4080 7.894364 ACCAAAGAATCCTTCTACTCTACTGTA 59.106 37.037 0.00 0.00 39.61 2.74
2016 4081 6.726764 ACCAAAGAATCCTTCTACTCTACTGT 59.273 38.462 0.00 0.00 39.61 3.55
2017 4082 7.176589 ACCAAAGAATCCTTCTACTCTACTG 57.823 40.000 0.00 0.00 39.61 2.74
2018 4083 6.381707 GGACCAAAGAATCCTTCTACTCTACT 59.618 42.308 0.00 0.00 39.61 2.57
2019 4084 6.381707 AGGACCAAAGAATCCTTCTACTCTAC 59.618 42.308 0.00 0.00 43.09 2.59
2020 4085 6.503944 AGGACCAAAGAATCCTTCTACTCTA 58.496 40.000 0.00 0.00 43.09 2.43
2021 4086 5.346270 AGGACCAAAGAATCCTTCTACTCT 58.654 41.667 0.00 0.00 43.09 3.24
2022 4087 5.395879 GGAGGACCAAAGAATCCTTCTACTC 60.396 48.000 0.00 0.00 45.74 2.59
2023 4088 4.471747 GGAGGACCAAAGAATCCTTCTACT 59.528 45.833 0.00 0.00 45.74 2.57
2024 4089 4.680975 CGGAGGACCAAAGAATCCTTCTAC 60.681 50.000 0.00 0.00 45.74 2.59
2025 4090 3.451178 CGGAGGACCAAAGAATCCTTCTA 59.549 47.826 0.00 0.00 45.74 2.10
2026 4091 2.237392 CGGAGGACCAAAGAATCCTTCT 59.763 50.000 0.00 0.00 45.74 2.85
2027 4092 2.633488 CGGAGGACCAAAGAATCCTTC 58.367 52.381 0.00 0.00 45.74 3.46
2028 4093 2.789409 CGGAGGACCAAAGAATCCTT 57.211 50.000 0.00 0.00 45.74 3.36
2815 5808 1.665916 CAGACCACCACTGCAGACG 60.666 63.158 23.35 12.01 0.00 4.18
3125 6125 1.376424 AGACTGCTCCATTGCCGTG 60.376 57.895 0.00 0.00 30.83 4.94
3320 6320 1.215647 GGCGTCACGGAAGATCACT 59.784 57.895 0.00 0.00 0.00 3.41
3375 6375 0.463654 AGCAAGACAACGCAACTCCA 60.464 50.000 0.00 0.00 0.00 3.86
3380 6380 0.657312 CTCACAGCAAGACAACGCAA 59.343 50.000 0.00 0.00 0.00 4.85
3437 6437 0.623723 ACGACAACCCTATTGGCCAT 59.376 50.000 6.09 0.00 37.83 4.40
3506 6592 7.394359 TGGCTTCAATTAGATTAAGCAGAAAGT 59.606 33.333 8.04 0.00 44.81 2.66
3563 6649 0.113190 CTGGGCCCTCCTCTGTTTTT 59.887 55.000 25.70 0.00 36.20 1.94
3564 6650 0.772124 TCTGGGCCCTCCTCTGTTTT 60.772 55.000 25.70 0.00 36.20 2.43
3565 6651 1.151810 TCTGGGCCCTCCTCTGTTT 60.152 57.895 25.70 0.00 36.20 2.83
3566 6652 1.614824 CTCTGGGCCCTCCTCTGTT 60.615 63.158 25.70 0.00 36.20 3.16
3567 6653 2.040278 CTCTGGGCCCTCCTCTGT 59.960 66.667 25.70 0.00 36.20 3.41
3568 6654 2.243774 TACCTCTGGGCCCTCCTCTG 62.244 65.000 25.70 9.17 36.20 3.35
3569 6655 1.941820 TACCTCTGGGCCCTCCTCT 60.942 63.158 25.70 5.14 36.20 3.69
3570 6656 1.458588 CTACCTCTGGGCCCTCCTC 60.459 68.421 25.70 0.00 36.20 3.71
3571 6657 2.245143 GACTACCTCTGGGCCCTCCT 62.245 65.000 25.70 3.16 36.20 3.69
3572 6658 1.762858 GACTACCTCTGGGCCCTCC 60.763 68.421 25.70 0.00 35.63 4.30
3573 6659 2.128507 CGACTACCTCTGGGCCCTC 61.129 68.421 25.70 8.47 35.63 4.30
3574 6660 2.042843 CGACTACCTCTGGGCCCT 60.043 66.667 25.70 4.09 35.63 5.19
3575 6661 3.851128 GCGACTACCTCTGGGCCC 61.851 72.222 17.59 17.59 35.63 5.80
3576 6662 4.208686 CGCGACTACCTCTGGGCC 62.209 72.222 0.00 0.00 35.63 5.80
3577 6663 4.208686 CCGCGACTACCTCTGGGC 62.209 72.222 8.23 0.00 35.63 5.36
3578 6664 2.050350 TTCCGCGACTACCTCTGGG 61.050 63.158 8.23 0.00 38.88 4.45
3579 6665 1.139095 GTTCCGCGACTACCTCTGG 59.861 63.158 8.23 0.00 0.00 3.86
3580 6666 0.179161 CTGTTCCGCGACTACCTCTG 60.179 60.000 8.23 0.00 0.00 3.35
3581 6667 1.313812 CCTGTTCCGCGACTACCTCT 61.314 60.000 8.23 0.00 0.00 3.69
3582 6668 1.139095 CCTGTTCCGCGACTACCTC 59.861 63.158 8.23 0.00 0.00 3.85
3746 6832 0.374758 CAATCTTGGCGTGTCCATCG 59.625 55.000 0.00 0.00 46.04 3.84
3755 6841 1.267732 GCGAGATCAACAATCTTGGCG 60.268 52.381 0.00 0.00 45.06 5.69
3964 7051 5.540337 GGATCTATCCATCTCCACAACACTA 59.460 44.000 4.04 0.00 46.38 2.74
4070 7163 5.941647 TCTGCATTCAAAGATGTTCTCATGA 59.058 36.000 0.00 0.00 34.06 3.07
4270 7390 7.063898 TCGAAGAGTTTGATTGAATGCTAGAAG 59.936 37.037 0.00 0.00 0.00 2.85
4321 7450 3.682377 GGATTTGGGGTTGTTTAATTGCG 59.318 43.478 0.00 0.00 0.00 4.85
4327 7457 4.354387 TCCTACAGGATTTGGGGTTGTTTA 59.646 41.667 0.00 0.00 39.78 2.01
4399 7529 4.273318 ACATTATGTTTCAGGGCCTCTTC 58.727 43.478 0.95 0.00 0.00 2.87
4709 7839 2.876645 GAAGCTCGCGGACGTCAG 60.877 66.667 18.91 15.23 41.18 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.