AutoCloner

Multiple sequence alignment - TraesCS2B01G270900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G270900	chr2B	100.000	2372	0	0	1	2372	369624640	369622269	0.000000e+00	4381.0
1	TraesCS2B01G270900	chr2B	98.734	158	2	0	2215	2372	683742063	683741906	4.990000e-72	281.0
2	TraesCS2B01G270900	chrUn	96.822	2234	53	8	1	2217	93415407	93417639	0.000000e+00	3716.0
3	TraesCS2B01G270900	chrUn	98.734	158	2	0	2215	2372	30304820	30304977	4.990000e-72	281.0
4	TraesCS2B01G270900	chrUn	98.734	158	2	0	2215	2372	467771259	467771102	4.990000e-72	281.0
5	TraesCS2B01G270900	chr3B	96.897	2224	59	7	1	2217	201523604	201521384	0.000000e+00	3716.0
6	TraesCS2B01G270900	chr3B	98.734	158	2	0	2215	2372	201486057	201485900	4.990000e-72	281.0
7	TraesCS2B01G270900	chr3B	98.400	125	2	0	220	344	687455800	687455676	1.100000e-53	220.0
8	TraesCS2B01G270900	chr3B	96.296	54	2	0	93	146	386277169	386277116	3.250000e-14	89.8
9	TraesCS2B01G270900	chr5D	96.773	2231	57	7	1	2217	560881406	560879177	0.000000e+00	3707.0
10	TraesCS2B01G270900	chr5D	95.610	2141	67	11	1	2136	329123509	329125627	0.000000e+00	3408.0
11	TraesCS2B01G270900	chr2D	96.368	2230	62	10	1	2217	272797300	272799523	0.000000e+00	3651.0
12	TraesCS2B01G270900	chr3A	96.396	2220	72	7	1	2217	672913413	672915627	0.000000e+00	3650.0
13	TraesCS2B01G270900	chr3A	98.734	158	2	0	2215	2372	524024788	524024631	4.990000e-72	281.0
14	TraesCS2B01G270900	chr6A	95.633	2221	82	7	1	2217	271186367	271184158	0.000000e+00	3550.0
15	TraesCS2B01G270900	chr4D	94.855	2235	87	11	1	2217	19925393	19923169	0.000000e+00	3465.0
16	TraesCS2B01G270900	chr7B	95.131	2177	78	14	56	2217	559141856	559139693	0.000000e+00	3408.0
17	TraesCS2B01G270900	chr7B	98.734	158	2	0	2215	2372	662741414	662741571	4.990000e-72	281.0
18	TraesCS2B01G270900	chr1A	96.881	1571	42	4	1	1570	584780038	584778474	0.000000e+00	2623.0
19	TraesCS2B01G270900	chr1A	98.734	158	2	0	2215	2372	554451615	554451772	4.990000e-72	281.0
20	TraesCS2B01G270900	chr7A	94.461	1643	77	8	1	1641	352185210	352186840	0.000000e+00	2518.0
21	TraesCS2B01G270900	chr7A	98.734	158	2	0	2215	2372	12216274	12216431	4.990000e-72	281.0
22	TraesCS2B01G270900	chr1D	96.112	1106	33	4	1118	2217	144238516	144237415	0.000000e+00	1796.0
23	TraesCS2B01G270900	chr3D	98.734	158	2	0	2215	2372	24161780	24161623	4.990000e-72	281.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G270900	chr2B	369622269	369624640	2371	True	4381	4381	100.000	1	2372	1	chr2B.!!$R1	2371
1	TraesCS2B01G270900	chrUn	93415407	93417639	2232	False	3716	3716	96.822	1	2217	1	chrUn.!!$F2	2216
2	TraesCS2B01G270900	chr3B	201521384	201523604	2220	True	3716	3716	96.897	1	2217	1	chr3B.!!$R2	2216
3	TraesCS2B01G270900	chr5D	560879177	560881406	2229	True	3707	3707	96.773	1	2217	1	chr5D.!!$R1	2216
4	TraesCS2B01G270900	chr5D	329123509	329125627	2118	False	3408	3408	95.610	1	2136	1	chr5D.!!$F1	2135
5	TraesCS2B01G270900	chr2D	272797300	272799523	2223	False	3651	3651	96.368	1	2217	1	chr2D.!!$F1	2216
6	TraesCS2B01G270900	chr3A	672913413	672915627	2214	False	3650	3650	96.396	1	2217	1	chr3A.!!$F1	2216
7	TraesCS2B01G270900	chr6A	271184158	271186367	2209	True	3550	3550	95.633	1	2217	1	chr6A.!!$R1	2216
8	TraesCS2B01G270900	chr4D	19923169	19925393	2224	True	3465	3465	94.855	1	2217	1	chr4D.!!$R1	2216
9	TraesCS2B01G270900	chr7B	559139693	559141856	2163	True	3408	3408	95.131	56	2217	1	chr7B.!!$R1	2161
10	TraesCS2B01G270900	chr1A	584778474	584780038	1564	True	2623	2623	96.881	1	1570	1	chr1A.!!$R1	1569
11	TraesCS2B01G270900	chr7A	352185210	352186840	1630	False	2518	2518	94.461	1	1641	1	chr7A.!!$F2	1640
12	TraesCS2B01G270900	chr1D	144237415	144238516	1101	True	1796	1796	96.112	1118	2217	1	chr1D.!!$R1	1099

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
629	645	2.295909	GCGAGACAGATAGAAGCAGGAT	59.704	50.0	0.0	0.0	0.0	3.24	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2169	2229	0.033601	TTTTGACCCGATCCCCCATG	60.034	55.0	0.0	0.0	0.0	3.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
515	523	4.228912	AGAACCAGATTTCGCAAACAAG	57.771	40.909	0.00	0.00	0.00	3.16
541	557	9.401058	GATAGAGGAAGAATGAAAGGAAAATCA	57.599	33.333	0.00	0.00	0.00	2.57
629	645	2.295909	GCGAGACAGATAGAAGCAGGAT	59.704	50.000	0.00	0.00	0.00	3.24
652	668	5.359756	TGAAGAGCAATAACACGATATGCT	58.640	37.500	0.00	0.00	0.00	3.79
789	805	7.293018	GTTGTTAAACCTGGTCGTATACTTTG	58.707	38.462	0.00	0.00	0.00	2.77
796	812	5.642063	ACCTGGTCGTATACTTTGTGAAATG	59.358	40.000	0.56	0.00	0.00	2.32
800	816	4.939439	GTCGTATACTTTGTGAAATGGGGT	59.061	41.667	0.56	0.00	0.00	4.95
1082	1111	4.036971	GTGTATTCGAGTCATAGGAGCTGT	59.963	45.833	0.00	0.00	0.00	4.40
1083	1112	4.276183	TGTATTCGAGTCATAGGAGCTGTC	59.724	45.833	0.00	0.00	0.00	3.51
1085	1114	1.134491	TCGAGTCATAGGAGCTGTCGA	60.134	52.381	0.00	0.00	32.88	4.20
1131	1160	7.225784	TGGTGATGTTATTGTTGCTGTAATT	57.774	32.000	0.00	0.00	0.00	1.40
1147	1176	3.759086	TGTAATTAAAGACGCATTGCCCA	59.241	39.130	2.41	0.00	0.00	5.36
1223	1252	3.026630	AGAGTTCAAATGCGAAGACGA	57.973	42.857	0.00	0.00	42.66	4.20
1275	1304	7.164230	TGCGGTTATAATTGATCAAAAAGGT	57.836	32.000	13.09	0.00	0.00	3.50
1529	1567	2.442236	ATGGGCAAGGACACTATTGG	57.558	50.000	0.00	0.00	0.00	3.16
1562	1600	8.540388	ACTAACCTCTATAAGAAATGCAGACAA	58.460	33.333	0.00	0.00	0.00	3.18
1650	1689	7.235935	TCTACGAGAGGGTTTTATTGAAAGA	57.764	36.000	0.00	0.00	0.00	2.52
1689	1729	6.817140	AGGAACGTAACAGATATTTCTTGGTC	59.183	38.462	0.00	0.00	0.00	4.02
1769	1809	2.953466	TTAAAGCGTATCAGCCGACT	57.047	45.000	0.00	0.00	38.01	4.18
1928	1968	6.569127	ATGTTATATATGGTAATCGCCCCA	57.431	37.500	0.00	0.00	34.66	4.96
1968	2008	5.855045	TCTATCTCGCCCTTCCTATTTTTC	58.145	41.667	0.00	0.00	0.00	2.29
1971	2011	4.855340	TCTCGCCCTTCCTATTTTTCAAT	58.145	39.130	0.00	0.00	0.00	2.57
2053	2112	9.875691	AAAATGAGAGAAGCAAAAGTAACTTTT	57.124	25.926	0.00	0.00	43.36	2.27
2083	2142	0.614812	TTACGGAAGCCCTACCCAAC	59.385	55.000	0.00	0.00	0.00	3.77
2099	2158	1.335496	CCAACGGAATGTTCCACGTTT	59.665	47.619	12.00	0.00	45.97	3.60
2169	2229	7.650834	ACGGTCTAGTTCTATACGAATACTC	57.349	40.000	0.00	0.00	33.45	2.59
2179	2239	5.892119	TCTATACGAATACTCATGGGGGATC	59.108	44.000	0.00	0.00	0.00	3.36
2217	2277	7.667043	AGTAAGTCGTTATGATTCAAGCAAA	57.333	32.000	0.00	0.00	0.00	3.68
2218	2278	8.268850	AGTAAGTCGTTATGATTCAAGCAAAT	57.731	30.769	0.00	0.00	0.00	2.32
2219	2279	8.730680	AGTAAGTCGTTATGATTCAAGCAAATT	58.269	29.630	0.00	0.00	0.00	1.82
2220	2280	9.341899	GTAAGTCGTTATGATTCAAGCAAATTT	57.658	29.630	0.00	0.00	0.00	1.82
2222	2282	9.559958	AAGTCGTTATGATTCAAGCAAATTTAG	57.440	29.630	0.00	0.00	0.00	1.85
2223	2283	8.946085	AGTCGTTATGATTCAAGCAAATTTAGA	58.054	29.630	0.00	0.00	0.00	2.10
2224	2284	9.554724	GTCGTTATGATTCAAGCAAATTTAGAA	57.445	29.630	0.00	0.00	0.00	2.10
2225	2285	9.554724	TCGTTATGATTCAAGCAAATTTAGAAC	57.445	29.630	0.00	0.00	0.00	3.01
2226	2286	9.559958	CGTTATGATTCAAGCAAATTTAGAACT	57.440	29.630	0.00	0.00	0.00	3.01
2322	2382	8.188531	TGTTACACTATTTCCGTTATGTAAGC	57.811	34.615	0.00	0.00	34.23	3.09
2323	2383	7.278424	TGTTACACTATTTCCGTTATGTAAGCC	59.722	37.037	0.00	0.00	34.23	4.35
2324	2384	5.121105	ACACTATTTCCGTTATGTAAGCCC	58.879	41.667	0.00	0.00	0.00	5.19
2325	2385	5.120399	CACTATTTCCGTTATGTAAGCCCA	58.880	41.667	0.00	0.00	0.00	5.36
2326	2386	5.007332	CACTATTTCCGTTATGTAAGCCCAC	59.993	44.000	0.00	0.00	0.00	4.61
2327	2387	3.706600	TTTCCGTTATGTAAGCCCACT	57.293	42.857	0.00	0.00	0.00	4.00
2328	2388	4.822685	TTTCCGTTATGTAAGCCCACTA	57.177	40.909	0.00	0.00	0.00	2.74
2329	2389	4.822685	TTCCGTTATGTAAGCCCACTAA	57.177	40.909	0.00	0.00	0.00	2.24
2330	2390	4.395959	TCCGTTATGTAAGCCCACTAAG	57.604	45.455	0.00	0.00	0.00	2.18
2331	2391	2.870411	CCGTTATGTAAGCCCACTAAGC	59.130	50.000	0.00	0.00	0.00	3.09
2332	2392	3.431766	CCGTTATGTAAGCCCACTAAGCT	60.432	47.826	0.00	0.00	44.19	3.74
2333	2393	3.802685	CGTTATGTAAGCCCACTAAGCTC	59.197	47.826	0.00	0.00	40.49	4.09
2334	2394	4.679639	CGTTATGTAAGCCCACTAAGCTCA	60.680	45.833	0.00	0.00	40.49	4.26
2335	2395	3.550437	ATGTAAGCCCACTAAGCTCAG	57.450	47.619	0.00	0.00	40.49	3.35
2336	2396	2.536066	TGTAAGCCCACTAAGCTCAGA	58.464	47.619	0.00	0.00	40.49	3.27
2337	2397	2.497675	TGTAAGCCCACTAAGCTCAGAG	59.502	50.000	0.00	0.00	40.49	3.35
2338	2398	0.908198	AAGCCCACTAAGCTCAGAGG	59.092	55.000	0.00	0.00	40.49	3.69
2339	2399	0.252467	AGCCCACTAAGCTCAGAGGT	60.252	55.000	0.00	0.00	34.91	3.85
2340	2400	0.615850	GCCCACTAAGCTCAGAGGTT	59.384	55.000	18.68	18.68	39.52	3.50
2341	2401	1.831736	GCCCACTAAGCTCAGAGGTTA	59.168	52.381	18.90	18.90	37.16	2.85
2350	2410	2.132740	CTCAGAGGTTAGAGCATCGC	57.867	55.000	0.00	0.00	42.67	4.58
2351	2411	1.406898	CTCAGAGGTTAGAGCATCGCA	59.593	52.381	0.00	0.00	42.67	5.10
2352	2412	2.034878	TCAGAGGTTAGAGCATCGCAT	58.965	47.619	0.00	0.00	42.67	4.73
2353	2413	2.432146	TCAGAGGTTAGAGCATCGCATT	59.568	45.455	0.00	0.00	42.67	3.56
2354	2414	3.118629	TCAGAGGTTAGAGCATCGCATTT	60.119	43.478	0.00	0.00	42.67	2.32
2355	2415	3.002042	CAGAGGTTAGAGCATCGCATTTG	59.998	47.826	0.00	0.00	42.67	2.32
2356	2416	2.939103	GAGGTTAGAGCATCGCATTTGT	59.061	45.455	0.00	0.00	42.67	2.83
2357	2417	4.119862	GAGGTTAGAGCATCGCATTTGTA	58.880	43.478	0.00	0.00	42.67	2.41
2358	2418	4.513442	AGGTTAGAGCATCGCATTTGTAA	58.487	39.130	0.00	0.00	42.67	2.41
2359	2419	5.126067	AGGTTAGAGCATCGCATTTGTAAT	58.874	37.500	0.00	0.00	42.67	1.89
2360	2420	5.008019	AGGTTAGAGCATCGCATTTGTAATG	59.992	40.000	0.00	0.00	42.67	1.90
2361	2421	3.344904	AGAGCATCGCATTTGTAATGC	57.655	42.857	13.04	13.04	43.75	3.56
2368	2428	2.475200	GCATTTGTAATGCGAGGGTC	57.525	50.000	8.45	0.00	35.17	4.46
2369	2429	1.742831	GCATTTGTAATGCGAGGGTCA	59.257	47.619	8.45	0.00	35.17	4.02
2370	2430	2.358898	GCATTTGTAATGCGAGGGTCAT	59.641	45.455	8.45	0.00	35.17	3.06
2371	2431	3.548818	GCATTTGTAATGCGAGGGTCATC	60.549	47.826	8.45	0.00	35.17	2.92

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
13	14	1.005805	CCATCCCACCCAATGAAGTGA	59.994	52.381	5.19	0.00	36.01	3.41
515	523	9.401058	TGATTTTCCTTTCATTCTTCCTCTATC	57.599	33.333	0.00	0.00	0.00	2.08
629	645	5.359756	AGCATATCGTGTTATTGCTCTTCA	58.640	37.500	0.00	0.00	0.00	3.02
652	668	3.004171	CCATATTTTTCCACCACGACGA	58.996	45.455	0.00	0.00	0.00	4.20
789	805	3.199946	TCAGATACTCCACCCCATTTCAC	59.800	47.826	0.00	0.00	0.00	3.18
796	812	2.572104	ACAGTTTCAGATACTCCACCCC	59.428	50.000	0.00	0.00	0.00	4.95
800	816	6.424032	TCTAGCTACAGTTTCAGATACTCCA	58.576	40.000	0.00	0.00	0.00	3.86
1131	1160	3.583806	CATTTTGGGCAATGCGTCTTTA	58.416	40.909	0.00	0.00	0.00	1.85
1147	1176	5.359194	TCGGATCTTTCTAGAGGCATTTT	57.641	39.130	0.00	0.00	32.92	1.82
1250	1279	7.781056	ACCTTTTTGATCAATTATAACCGCAT	58.219	30.769	9.40	0.00	0.00	4.73
1381	1410	7.953305	TTAATTCTTTGATCTCAATTTCGCG	57.047	32.000	0.00	0.00	35.55	5.87
1569	1607	7.229581	AGATACTACTCGAACTGTTCCTTTT	57.770	36.000	14.48	0.24	0.00	2.27
1650	1689	2.224209	ACGTTCCTGATGTTTCCGAACT	60.224	45.455	0.00	0.00	36.70	3.01
1689	1729	4.847633	TCTTTTGATGTCGCAAAGTTGAG	58.152	39.130	0.00	0.00	38.80	3.02
1769	1809	5.663456	AGTTGGTATAAATTCGTAAGCCGA	58.337	37.500	0.00	0.00	45.66	5.54
1884	1924	5.970640	ACATAAGACTTCTCCCCCAATTCTA	59.029	40.000	0.00	0.00	0.00	2.10
1928	1968	7.598278	CGAGATAGAATTTGAGCACTATAGGT	58.402	38.462	4.43	0.00	0.00	3.08
2053	2112	3.557686	GGGCTTCCGTAACTAAACCTTCA	60.558	47.826	0.00	0.00	0.00	3.02
2094	2153	3.326747	GTGTCATTCTCTAGCCAAACGT	58.673	45.455	0.00	0.00	0.00	3.99
2099	2158	3.106827	TGATGGTGTCATTCTCTAGCCA	58.893	45.455	0.00	0.00	32.98	4.75
2169	2229	0.033601	TTTTGACCCGATCCCCCATG	60.034	55.000	0.00	0.00	0.00	3.66
2179	2239	4.212636	ACGACTTACTTCAATTTTGACCCG	59.787	41.667	0.00	0.00	36.83	5.28
2296	2356	8.658609	GCTTACATAACGGAAATAGTGTAACAA	58.341	33.333	0.00	0.00	41.43	2.83
2297	2357	7.278424	GGCTTACATAACGGAAATAGTGTAACA	59.722	37.037	0.00	0.00	41.43	2.41
2298	2358	7.254556	GGGCTTACATAACGGAAATAGTGTAAC	60.255	40.741	0.00	0.00	31.21	2.50
2299	2359	6.762661	GGGCTTACATAACGGAAATAGTGTAA	59.237	38.462	0.00	0.00	32.86	2.41
2300	2360	6.127111	TGGGCTTACATAACGGAAATAGTGTA	60.127	38.462	0.00	0.00	0.00	2.90
2301	2361	5.121105	GGGCTTACATAACGGAAATAGTGT	58.879	41.667	0.00	0.00	0.00	3.55
2302	2362	5.007332	GTGGGCTTACATAACGGAAATAGTG	59.993	44.000	0.00	0.00	0.00	2.74
2303	2363	5.104652	AGTGGGCTTACATAACGGAAATAGT	60.105	40.000	0.00	0.00	0.00	2.12
2304	2364	5.365619	AGTGGGCTTACATAACGGAAATAG	58.634	41.667	0.00	0.00	0.00	1.73
2305	2365	5.362105	AGTGGGCTTACATAACGGAAATA	57.638	39.130	0.00	0.00	0.00	1.40
2306	2366	4.230745	AGTGGGCTTACATAACGGAAAT	57.769	40.909	0.00	0.00	0.00	2.17
2307	2367	3.706600	AGTGGGCTTACATAACGGAAA	57.293	42.857	0.00	0.00	0.00	3.13
2308	2368	4.761975	CTTAGTGGGCTTACATAACGGAA	58.238	43.478	0.00	0.00	0.00	4.30
2309	2369	3.431207	GCTTAGTGGGCTTACATAACGGA	60.431	47.826	0.00	0.00	0.00	4.69
2310	2370	2.870411	GCTTAGTGGGCTTACATAACGG	59.130	50.000	0.00	0.00	0.00	4.44
2311	2371	3.793559	AGCTTAGTGGGCTTACATAACG	58.206	45.455	0.00	0.00	36.56	3.18
2312	2372	4.766375	TGAGCTTAGTGGGCTTACATAAC	58.234	43.478	0.00	0.00	40.40	1.89
2313	2373	4.714802	TCTGAGCTTAGTGGGCTTACATAA	59.285	41.667	5.29	0.00	40.40	1.90
2314	2374	4.286707	TCTGAGCTTAGTGGGCTTACATA	58.713	43.478	5.29	0.00	40.40	2.29
2315	2375	3.107601	TCTGAGCTTAGTGGGCTTACAT	58.892	45.455	5.29	0.00	40.40	2.29
2316	2376	2.497675	CTCTGAGCTTAGTGGGCTTACA	59.502	50.000	5.29	0.00	40.40	2.41
2317	2377	2.159028	CCTCTGAGCTTAGTGGGCTTAC	60.159	54.545	16.73	0.00	40.40	2.34
2318	2378	2.111384	CCTCTGAGCTTAGTGGGCTTA	58.889	52.381	16.73	0.00	40.40	3.09
2319	2379	0.908198	CCTCTGAGCTTAGTGGGCTT	59.092	55.000	16.73	0.00	40.40	4.35
2320	2380	0.252467	ACCTCTGAGCTTAGTGGGCT	60.252	55.000	25.22	7.54	43.26	5.19
2321	2381	0.615850	AACCTCTGAGCTTAGTGGGC	59.384	55.000	25.22	0.00	36.02	5.36
2322	2382	3.366396	TCTAACCTCTGAGCTTAGTGGG	58.634	50.000	25.22	19.78	36.02	4.61
2323	2383	4.647424	CTCTAACCTCTGAGCTTAGTGG	57.353	50.000	21.42	21.42	37.36	4.00
2331	2391	1.406898	TGCGATGCTCTAACCTCTGAG	59.593	52.381	0.00	0.00	0.00	3.35
2332	2392	1.474330	TGCGATGCTCTAACCTCTGA	58.526	50.000	0.00	0.00	0.00	3.27
2333	2393	2.522836	ATGCGATGCTCTAACCTCTG	57.477	50.000	0.00	0.00	0.00	3.35
2334	2394	3.201290	CAAATGCGATGCTCTAACCTCT	58.799	45.455	0.00	0.00	0.00	3.69
2335	2395	2.939103	ACAAATGCGATGCTCTAACCTC	59.061	45.455	0.00	0.00	0.00	3.85
2336	2396	2.991250	ACAAATGCGATGCTCTAACCT	58.009	42.857	0.00	0.00	0.00	3.50
2337	2397	4.875544	TTACAAATGCGATGCTCTAACC	57.124	40.909	0.00	0.00	0.00	2.85
2338	2398	4.672413	GCATTACAAATGCGATGCTCTAAC	59.328	41.667	8.70	0.00	41.16	2.34
2339	2399	4.847633	GCATTACAAATGCGATGCTCTAA	58.152	39.130	8.70	0.00	41.16	2.10
2340	2400	4.472691	GCATTACAAATGCGATGCTCTA	57.527	40.909	8.70	0.00	41.16	2.43
2341	2401	3.344904	GCATTACAAATGCGATGCTCT	57.655	42.857	8.70	0.00	41.16	4.09
2349	2409	1.742831	TGACCCTCGCATTACAAATGC	59.257	47.619	13.35	13.35	41.35	3.56
2350	2410	4.214980	GATGACCCTCGCATTACAAATG	57.785	45.455	0.00	0.00	0.00	2.32

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.