Multiple sequence alignment - TraesCS2B01G270700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G270700 chr2B 100.000 3242 0 0 1 3242 369502621 369499380 0.000000e+00 5987.0
1 TraesCS2B01G270700 chr2B 85.948 306 38 5 2502 2804 359531338 359531641 4.030000e-84 322.0
2 TraesCS2B01G270700 chr2B 85.304 313 41 5 2498 2808 4846135 4846444 5.220000e-83 318.0
3 TraesCS2B01G270700 chr2B 84.665 313 43 5 2498 2808 11120379 11120688 1.130000e-79 307.0
4 TraesCS2B01G270700 chr2B 91.667 84 5 1 3161 3242 365951978 365952061 7.350000e-22 115.0
5 TraesCS2B01G270700 chr2B 100.000 28 0 0 3117 3144 418963729 418963756 6.000000e-03 52.8
6 TraesCS2B01G270700 chr2A 95.747 1881 35 15 748 2621 360751238 360749396 0.000000e+00 2988.0
7 TraesCS2B01G270700 chr2A 95.292 616 14 7 79 680 360751880 360751266 0.000000e+00 963.0
8 TraesCS2B01G270700 chr2A 93.187 455 22 7 2651 3096 360749396 360748942 0.000000e+00 660.0
9 TraesCS2B01G270700 chr2A 96.429 84 1 1 3092 3175 360748839 360748758 1.570000e-28 137.0
10 TraesCS2B01G270700 chr2D 96.131 1189 23 5 1320 2501 293683393 293682221 0.000000e+00 1919.0
11 TraesCS2B01G270700 chr2D 94.793 653 10 6 48 680 293684547 293683899 0.000000e+00 996.0
12 TraesCS2B01G270700 chr2D 95.009 541 26 1 748 1288 293683871 293683332 0.000000e+00 848.0
13 TraesCS2B01G270700 chr2D 90.941 287 14 6 2819 3095 293682123 293681839 3.050000e-100 375.0
14 TraesCS2B01G270700 chr2D 92.391 92 4 3 682 771 13599702 13599792 9.440000e-26 128.0
15 TraesCS2B01G270700 chr7D 91.262 309 24 3 2501 2807 4787767 4787460 5.000000e-113 418.0
16 TraesCS2B01G270700 chr4A 90.615 309 26 3 2501 2807 738878313 738878006 1.080000e-109 407.0
17 TraesCS2B01G270700 chr1B 87.702 309 34 4 2501 2807 681056014 681056320 1.110000e-94 357.0
18 TraesCS2B01G270700 chr1B 98.630 73 1 0 681 753 21805925 21805853 2.620000e-26 130.0
19 TraesCS2B01G270700 chr1B 93.976 83 4 1 682 763 67115814 67115896 1.220000e-24 124.0
20 TraesCS2B01G270700 chr1B 95.946 74 3 0 3169 3242 555633686 555633613 1.580000e-23 121.0
21 TraesCS2B01G270700 chr1B 95.946 74 3 0 3169 3242 555634511 555634438 1.580000e-23 121.0
22 TraesCS2B01G270700 chr6B 85.897 312 33 8 2502 2806 26395999 26396306 4.030000e-84 322.0
23 TraesCS2B01G270700 chr6B 91.304 92 6 2 681 771 281236311 281236401 1.220000e-24 124.0
24 TraesCS2B01G270700 chr7B 84.424 321 43 7 2498 2815 733133663 733133979 3.140000e-80 309.0
25 TraesCS2B01G270700 chr7B 97.222 72 2 0 3171 3242 316313792 316313721 4.390000e-24 122.0
26 TraesCS2B01G270700 chr7B 88.000 100 6 5 681 778 641138092 641138187 2.640000e-21 113.0
27 TraesCS2B01G270700 chrUn 97.468 79 2 0 681 759 86292800 86292722 5.640000e-28 135.0
28 TraesCS2B01G270700 chr3D 98.611 72 1 0 3171 3242 33827599 33827528 9.440000e-26 128.0
29 TraesCS2B01G270700 chr3D 97.183 71 2 0 3172 3242 523325665 523325595 1.580000e-23 121.0
30 TraesCS2B01G270700 chr5B 94.048 84 4 1 681 764 493651474 493651556 3.400000e-25 126.0
31 TraesCS2B01G270700 chr3B 94.048 84 4 1 681 763 143262878 143262961 3.400000e-25 126.0
32 TraesCS2B01G270700 chr4B 97.222 72 2 0 3171 3242 24834768 24834697 4.390000e-24 122.0
33 TraesCS2B01G270700 chr5D 96.000 75 2 1 3169 3242 554363511 554363585 1.580000e-23 121.0
34 TraesCS2B01G270700 chr5A 95.946 74 3 0 3169 3242 48171200 48171127 1.580000e-23 121.0
35 TraesCS2B01G270700 chr6D 90.323 93 5 4 681 771 354222659 354222749 5.680000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G270700 chr2B 369499380 369502621 3241 True 5987.0 5987 100.00000 1 3242 1 chr2B.!!$R1 3241
1 TraesCS2B01G270700 chr2A 360748758 360751880 3122 True 1187.0 2988 95.16375 79 3175 4 chr2A.!!$R1 3096
2 TraesCS2B01G270700 chr2D 293681839 293684547 2708 True 1034.5 1919 94.21850 48 3095 4 chr2D.!!$R1 3047

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 765 0.030369 CCTCCGACGAGTATTTCCGG 59.970 60.0 0.00 0.00 41.36 5.14 F
746 773 0.388294 GAGTATTTCCGGACGGAGGG 59.612 60.0 13.64 0.00 46.06 4.30 F
2133 2262 1.198713 TCCTAAGGCAGCTGAAGGAG 58.801 55.0 20.43 8.49 32.60 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2132 2261 0.333312 TCCCTCTTCGAGCTCCTTCT 59.667 55.0 8.47 0.0 0.0 2.85 R
2136 2265 1.115467 TCATTCCCTCTTCGAGCTCC 58.885 55.0 8.47 0.0 0.0 4.70 R
3170 3423 0.702902 TTCTGGACGGAGGGAGTAGT 59.297 55.0 0.00 0.0 0.0 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 5.751243 AAAAGTACTCAACATGTCCACAC 57.249 39.130 0.00 0.00 0.00 3.82
39 40 4.689612 AAGTACTCAACATGTCCACACT 57.310 40.909 0.00 0.00 0.00 3.55
40 41 3.995199 AGTACTCAACATGTCCACACTG 58.005 45.455 0.00 0.00 0.00 3.66
41 42 2.260844 ACTCAACATGTCCACACTGG 57.739 50.000 0.00 0.00 39.43 4.00
42 43 1.202806 ACTCAACATGTCCACACTGGG 60.203 52.381 0.00 0.00 38.32 4.45
43 44 1.072173 CTCAACATGTCCACACTGGGA 59.928 52.381 0.00 0.00 38.32 4.37
44 45 1.492599 TCAACATGTCCACACTGGGAA 59.507 47.619 0.00 0.00 39.05 3.97
45 46 2.092158 TCAACATGTCCACACTGGGAAA 60.092 45.455 0.00 0.00 39.05 3.13
46 47 2.692557 CAACATGTCCACACTGGGAAAA 59.307 45.455 0.00 0.00 39.05 2.29
143 156 2.780094 CGCGGCTGATCTCCACTCT 61.780 63.158 0.00 0.00 0.00 3.24
340 360 2.565841 GCCAGATTTGATTACCTCGCT 58.434 47.619 0.00 0.00 0.00 4.93
467 488 4.150897 ACCAAGCTTATGCGGATCTTAA 57.849 40.909 7.51 0.00 45.42 1.85
508 529 9.121658 CATTAGCTCTCGGGTATTACTATCATA 57.878 37.037 0.00 0.00 0.00 2.15
524 545 7.517614 ACTATCATATCATCGTGTCAGTTCT 57.482 36.000 0.00 0.00 0.00 3.01
541 562 4.941873 CAGTTCTTATGTGGTTCCCCTAAC 59.058 45.833 0.00 0.00 37.36 2.34
549 570 1.232621 GGTTCCCCTAACGTGTGCAC 61.233 60.000 10.75 10.75 39.13 4.57
633 654 9.525409 CTCTGTCTAGTTTCTACTCTCTAGTAC 57.475 40.741 0.00 0.00 37.15 2.73
680 707 1.036707 CTCCGTTTTTGCCTTTCCCA 58.963 50.000 0.00 0.00 0.00 4.37
681 708 1.410882 CTCCGTTTTTGCCTTTCCCAA 59.589 47.619 0.00 0.00 0.00 4.12
682 709 2.037121 CTCCGTTTTTGCCTTTCCCAAT 59.963 45.455 0.00 0.00 0.00 3.16
683 710 2.142319 CCGTTTTTGCCTTTCCCAATG 58.858 47.619 0.00 0.00 0.00 2.82
687 714 4.625311 CGTTTTTGCCTTTCCCAATGTATC 59.375 41.667 0.00 0.00 0.00 2.24
688 715 5.566627 CGTTTTTGCCTTTCCCAATGTATCT 60.567 40.000 0.00 0.00 0.00 1.98
689 716 6.349777 CGTTTTTGCCTTTCCCAATGTATCTA 60.350 38.462 0.00 0.00 0.00 1.98
690 717 6.773976 TTTTGCCTTTCCCAATGTATCTAG 57.226 37.500 0.00 0.00 0.00 2.43
692 719 5.708736 TGCCTTTCCCAATGTATCTAGAA 57.291 39.130 0.00 0.00 0.00 2.10
693 720 5.437060 TGCCTTTCCCAATGTATCTAGAAC 58.563 41.667 0.00 0.00 0.00 3.01
694 721 5.191722 TGCCTTTCCCAATGTATCTAGAACT 59.808 40.000 0.00 0.00 0.00 3.01
695 722 6.385759 TGCCTTTCCCAATGTATCTAGAACTA 59.614 38.462 0.00 0.00 0.00 2.24
697 724 7.773690 GCCTTTCCCAATGTATCTAGAACTAAA 59.226 37.037 0.00 0.00 0.00 1.85
726 753 8.908903 ACATCTAGATATATTCATTCCTCCGAC 58.091 37.037 4.54 0.00 0.00 4.79
727 754 7.555306 TCTAGATATATTCATTCCTCCGACG 57.445 40.000 0.00 0.00 0.00 5.12
728 755 7.336396 TCTAGATATATTCATTCCTCCGACGA 58.664 38.462 0.00 0.00 0.00 4.20
729 756 6.443934 AGATATATTCATTCCTCCGACGAG 57.556 41.667 0.00 0.00 35.72 4.18
730 757 5.946972 AGATATATTCATTCCTCCGACGAGT 59.053 40.000 0.00 0.00 33.93 4.18
731 758 7.110810 AGATATATTCATTCCTCCGACGAGTA 58.889 38.462 0.00 0.00 33.93 2.59
732 759 7.776030 AGATATATTCATTCCTCCGACGAGTAT 59.224 37.037 0.00 0.00 33.93 2.12
733 760 4.939052 ATTCATTCCTCCGACGAGTATT 57.061 40.909 0.00 0.00 33.93 1.89
734 761 4.730949 TTCATTCCTCCGACGAGTATTT 57.269 40.909 0.00 0.00 33.93 1.40
735 762 4.303086 TCATTCCTCCGACGAGTATTTC 57.697 45.455 0.00 0.00 33.93 2.17
736 763 3.067742 TCATTCCTCCGACGAGTATTTCC 59.932 47.826 0.00 0.00 33.93 3.13
737 764 1.019673 TCCTCCGACGAGTATTTCCG 58.980 55.000 0.00 0.00 33.93 4.30
738 765 0.030369 CCTCCGACGAGTATTTCCGG 59.970 60.000 0.00 0.00 41.36 5.14
739 766 1.019673 CTCCGACGAGTATTTCCGGA 58.980 55.000 0.00 0.00 45.74 5.14
740 767 0.734889 TCCGACGAGTATTTCCGGAC 59.265 55.000 1.83 0.00 43.47 4.79
741 768 0.590732 CCGACGAGTATTTCCGGACG 60.591 60.000 1.83 5.89 42.49 4.79
742 769 0.590732 CGACGAGTATTTCCGGACGG 60.591 60.000 1.83 3.96 0.00 4.79
743 770 0.734889 GACGAGTATTTCCGGACGGA 59.265 55.000 1.83 9.76 43.52 4.69
744 771 0.737219 ACGAGTATTTCCGGACGGAG 59.263 55.000 13.64 3.15 46.06 4.63
745 772 0.030369 CGAGTATTTCCGGACGGAGG 59.970 60.000 13.64 0.00 46.06 4.30
746 773 0.388294 GAGTATTTCCGGACGGAGGG 59.612 60.000 13.64 0.00 46.06 4.30
760 787 4.333690 GACGGAGGGAGTATATTCTAGCA 58.666 47.826 0.00 0.00 0.00 3.49
761 788 4.936802 ACGGAGGGAGTATATTCTAGCAT 58.063 43.478 0.00 0.00 0.00 3.79
846 873 1.753073 GGTTCCATTTGCTCATCCCTG 59.247 52.381 0.00 0.00 0.00 4.45
943 970 6.706055 TGAATTGATAGTGACAGAACGTTC 57.294 37.500 20.71 20.71 0.00 3.95
1007 1034 5.355596 CCATCTCGAATTAGATATGGAGGC 58.644 45.833 21.25 0.00 43.51 4.70
1204 1231 5.614324 AAAAGACAAAGAAAAGGAAGGGG 57.386 39.130 0.00 0.00 0.00 4.79
1251 1278 9.033481 GTAGATGAACATGAAGAAGATCAGAAG 57.967 37.037 0.00 0.00 31.76 2.85
1252 1279 7.049133 AGATGAACATGAAGAAGATCAGAAGG 58.951 38.462 0.00 0.00 31.76 3.46
1253 1280 4.940046 TGAACATGAAGAAGATCAGAAGGC 59.060 41.667 0.00 0.00 31.76 4.35
1254 1281 3.529533 ACATGAAGAAGATCAGAAGGCG 58.470 45.455 0.00 0.00 31.76 5.52
1255 1282 3.196469 ACATGAAGAAGATCAGAAGGCGA 59.804 43.478 0.00 0.00 31.76 5.54
1256 1283 3.516981 TGAAGAAGATCAGAAGGCGAG 57.483 47.619 0.00 0.00 0.00 5.03
1257 1284 2.828520 TGAAGAAGATCAGAAGGCGAGT 59.171 45.455 0.00 0.00 0.00 4.18
1258 1285 4.017126 TGAAGAAGATCAGAAGGCGAGTA 58.983 43.478 0.00 0.00 0.00 2.59
1259 1286 4.462834 TGAAGAAGATCAGAAGGCGAGTAA 59.537 41.667 0.00 0.00 0.00 2.24
1260 1287 4.647424 AGAAGATCAGAAGGCGAGTAAG 57.353 45.455 0.00 0.00 0.00 2.34
1261 1288 4.274147 AGAAGATCAGAAGGCGAGTAAGA 58.726 43.478 0.00 0.00 0.00 2.10
1262 1289 4.097286 AGAAGATCAGAAGGCGAGTAAGAC 59.903 45.833 0.00 0.00 0.00 3.01
1263 1290 2.356382 AGATCAGAAGGCGAGTAAGACG 59.644 50.000 0.00 0.00 0.00 4.18
1264 1291 1.817357 TCAGAAGGCGAGTAAGACGA 58.183 50.000 0.00 0.00 0.00 4.20
1265 1292 2.156917 TCAGAAGGCGAGTAAGACGAA 58.843 47.619 0.00 0.00 0.00 3.85
1266 1293 2.161808 TCAGAAGGCGAGTAAGACGAAG 59.838 50.000 0.00 0.00 0.00 3.79
1267 1294 1.473278 AGAAGGCGAGTAAGACGAAGG 59.527 52.381 0.00 0.00 0.00 3.46
1268 1295 1.471684 GAAGGCGAGTAAGACGAAGGA 59.528 52.381 0.00 0.00 0.00 3.36
1269 1296 1.542492 AGGCGAGTAAGACGAAGGAA 58.458 50.000 0.00 0.00 0.00 3.36
1270 1297 1.891150 AGGCGAGTAAGACGAAGGAAA 59.109 47.619 0.00 0.00 0.00 3.13
1271 1298 2.298163 AGGCGAGTAAGACGAAGGAAAA 59.702 45.455 0.00 0.00 0.00 2.29
1272 1299 3.056035 AGGCGAGTAAGACGAAGGAAAAT 60.056 43.478 0.00 0.00 0.00 1.82
1273 1300 4.159135 AGGCGAGTAAGACGAAGGAAAATA 59.841 41.667 0.00 0.00 0.00 1.40
1274 1301 4.866486 GGCGAGTAAGACGAAGGAAAATAA 59.134 41.667 0.00 0.00 0.00 1.40
1275 1302 5.005490 GGCGAGTAAGACGAAGGAAAATAAG 59.995 44.000 0.00 0.00 0.00 1.73
1276 1303 5.803967 GCGAGTAAGACGAAGGAAAATAAGA 59.196 40.000 0.00 0.00 0.00 2.10
1277 1304 6.309737 GCGAGTAAGACGAAGGAAAATAAGAA 59.690 38.462 0.00 0.00 0.00 2.52
1278 1305 7.462988 GCGAGTAAGACGAAGGAAAATAAGAAG 60.463 40.741 0.00 0.00 0.00 2.85
1279 1306 7.009357 CGAGTAAGACGAAGGAAAATAAGAAGG 59.991 40.741 0.00 0.00 0.00 3.46
1280 1307 5.881777 AAGACGAAGGAAAATAAGAAGGC 57.118 39.130 0.00 0.00 0.00 4.35
1281 1308 4.906618 AGACGAAGGAAAATAAGAAGGCA 58.093 39.130 0.00 0.00 0.00 4.75
1282 1309 4.938226 AGACGAAGGAAAATAAGAAGGCAG 59.062 41.667 0.00 0.00 0.00 4.85
1283 1310 4.906618 ACGAAGGAAAATAAGAAGGCAGA 58.093 39.130 0.00 0.00 0.00 4.26
1284 1311 4.938226 ACGAAGGAAAATAAGAAGGCAGAG 59.062 41.667 0.00 0.00 0.00 3.35
1285 1312 5.178797 CGAAGGAAAATAAGAAGGCAGAGA 58.821 41.667 0.00 0.00 0.00 3.10
1286 1313 5.643777 CGAAGGAAAATAAGAAGGCAGAGAA 59.356 40.000 0.00 0.00 0.00 2.87
1287 1314 6.149474 CGAAGGAAAATAAGAAGGCAGAGAAA 59.851 38.462 0.00 0.00 0.00 2.52
1288 1315 6.825944 AGGAAAATAAGAAGGCAGAGAAAC 57.174 37.500 0.00 0.00 0.00 2.78
1289 1316 6.306987 AGGAAAATAAGAAGGCAGAGAAACA 58.693 36.000 0.00 0.00 0.00 2.83
1290 1317 6.950619 AGGAAAATAAGAAGGCAGAGAAACAT 59.049 34.615 0.00 0.00 0.00 2.71
1291 1318 7.031975 GGAAAATAAGAAGGCAGAGAAACATG 58.968 38.462 0.00 0.00 0.00 3.21
1292 1319 7.094205 GGAAAATAAGAAGGCAGAGAAACATGA 60.094 37.037 0.00 0.00 0.00 3.07
1293 1320 7.765695 AAATAAGAAGGCAGAGAAACATGAA 57.234 32.000 0.00 0.00 0.00 2.57
1294 1321 6.998968 ATAAGAAGGCAGAGAAACATGAAG 57.001 37.500 0.00 0.00 0.00 3.02
1295 1322 4.630644 AGAAGGCAGAGAAACATGAAGA 57.369 40.909 0.00 0.00 0.00 2.87
1296 1323 5.176741 AGAAGGCAGAGAAACATGAAGAT 57.823 39.130 0.00 0.00 0.00 2.40
1297 1324 4.942483 AGAAGGCAGAGAAACATGAAGATG 59.058 41.667 0.00 0.00 35.49 2.90
1298 1325 3.618351 AGGCAGAGAAACATGAAGATGG 58.382 45.455 0.00 0.00 33.39 3.51
1299 1326 3.009916 AGGCAGAGAAACATGAAGATGGT 59.990 43.478 0.00 0.00 33.39 3.55
1300 1327 4.225942 AGGCAGAGAAACATGAAGATGGTA 59.774 41.667 0.00 0.00 33.39 3.25
1301 1328 4.943705 GGCAGAGAAACATGAAGATGGTAA 59.056 41.667 0.00 0.00 33.39 2.85
1302 1329 5.065731 GGCAGAGAAACATGAAGATGGTAAG 59.934 44.000 0.00 0.00 33.39 2.34
1303 1330 5.877012 GCAGAGAAACATGAAGATGGTAAGA 59.123 40.000 0.00 0.00 33.39 2.10
1304 1331 6.372659 GCAGAGAAACATGAAGATGGTAAGAA 59.627 38.462 0.00 0.00 33.39 2.52
1305 1332 7.413877 GCAGAGAAACATGAAGATGGTAAGAAG 60.414 40.741 0.00 0.00 33.39 2.85
1306 1333 7.065563 CAGAGAAACATGAAGATGGTAAGAAGG 59.934 40.741 0.00 0.00 33.39 3.46
1307 1334 7.020827 AGAAACATGAAGATGGTAAGAAGGA 57.979 36.000 0.00 0.00 33.39 3.36
1308 1335 7.461749 AGAAACATGAAGATGGTAAGAAGGAA 58.538 34.615 0.00 0.00 33.39 3.36
1309 1336 7.944554 AGAAACATGAAGATGGTAAGAAGGAAA 59.055 33.333 0.00 0.00 33.39 3.13
1310 1337 8.477419 AAACATGAAGATGGTAAGAAGGAAAA 57.523 30.769 0.00 0.00 33.39 2.29
1311 1338 7.693969 ACATGAAGATGGTAAGAAGGAAAAG 57.306 36.000 0.00 0.00 33.39 2.27
1312 1339 7.461749 ACATGAAGATGGTAAGAAGGAAAAGA 58.538 34.615 0.00 0.00 33.39 2.52
1313 1340 7.944554 ACATGAAGATGGTAAGAAGGAAAAGAA 59.055 33.333 0.00 0.00 33.39 2.52
1314 1341 7.986085 TGAAGATGGTAAGAAGGAAAAGAAG 57.014 36.000 0.00 0.00 0.00 2.85
1315 1342 7.745717 TGAAGATGGTAAGAAGGAAAAGAAGA 58.254 34.615 0.00 0.00 0.00 2.87
1316 1343 8.217799 TGAAGATGGTAAGAAGGAAAAGAAGAA 58.782 33.333 0.00 0.00 0.00 2.52
1317 1344 8.628630 AAGATGGTAAGAAGGAAAAGAAGAAG 57.371 34.615 0.00 0.00 0.00 2.85
1318 1345 7.750655 AGATGGTAAGAAGGAAAAGAAGAAGT 58.249 34.615 0.00 0.00 0.00 3.01
1319 1346 8.221251 AGATGGTAAGAAGGAAAAGAAGAAGTT 58.779 33.333 0.00 0.00 0.00 2.66
1320 1347 9.503399 GATGGTAAGAAGGAAAAGAAGAAGTTA 57.497 33.333 0.00 0.00 0.00 2.24
1321 1348 8.904099 TGGTAAGAAGGAAAAGAAGAAGTTAG 57.096 34.615 0.00 0.00 0.00 2.34
1322 1349 8.711170 TGGTAAGAAGGAAAAGAAGAAGTTAGA 58.289 33.333 0.00 0.00 0.00 2.10
1323 1350 9.210329 GGTAAGAAGGAAAAGAAGAAGTTAGAG 57.790 37.037 0.00 0.00 0.00 2.43
1324 1351 9.984190 GTAAGAAGGAAAAGAAGAAGTTAGAGA 57.016 33.333 0.00 0.00 0.00 3.10
1326 1353 9.554395 AAGAAGGAAAAGAAGAAGTTAGAGAAG 57.446 33.333 0.00 0.00 0.00 2.85
1327 1354 7.659799 AGAAGGAAAAGAAGAAGTTAGAGAAGC 59.340 37.037 0.00 0.00 0.00 3.86
1328 1355 6.831976 AGGAAAAGAAGAAGTTAGAGAAGCA 58.168 36.000 0.00 0.00 0.00 3.91
1329 1356 7.457561 AGGAAAAGAAGAAGTTAGAGAAGCAT 58.542 34.615 0.00 0.00 0.00 3.79
1330 1357 7.390162 AGGAAAAGAAGAAGTTAGAGAAGCATG 59.610 37.037 0.00 0.00 0.00 4.06
1331 1358 7.389053 GGAAAAGAAGAAGTTAGAGAAGCATGA 59.611 37.037 0.00 0.00 0.00 3.07
1332 1359 8.682936 AAAAGAAGAAGTTAGAGAAGCATGAA 57.317 30.769 0.00 0.00 0.00 2.57
1333 1360 7.903995 AAGAAGAAGTTAGAGAAGCATGAAG 57.096 36.000 0.00 0.00 0.00 3.02
1334 1361 7.238486 AGAAGAAGTTAGAGAAGCATGAAGA 57.762 36.000 0.00 0.00 0.00 2.87
1335 1362 7.850193 AGAAGAAGTTAGAGAAGCATGAAGAT 58.150 34.615 0.00 0.00 0.00 2.40
1336 1363 7.765360 AGAAGAAGTTAGAGAAGCATGAAGATG 59.235 37.037 0.00 0.00 0.00 2.90
1337 1364 7.180322 AGAAGTTAGAGAAGCATGAAGATGA 57.820 36.000 0.00 0.00 0.00 2.92
1338 1365 7.041107 AGAAGTTAGAGAAGCATGAAGATGAC 58.959 38.462 0.00 0.00 0.00 3.06
1339 1366 5.347342 AGTTAGAGAAGCATGAAGATGACG 58.653 41.667 0.00 0.00 0.00 4.35
1340 1367 3.176552 AGAGAAGCATGAAGATGACGG 57.823 47.619 0.00 0.00 0.00 4.79
1341 1368 2.158986 AGAGAAGCATGAAGATGACGGG 60.159 50.000 0.00 0.00 0.00 5.28
1342 1369 1.833630 AGAAGCATGAAGATGACGGGA 59.166 47.619 0.00 0.00 0.00 5.14
1343 1370 2.237143 AGAAGCATGAAGATGACGGGAA 59.763 45.455 0.00 0.00 0.00 3.97
1527 1641 3.243873 GCCCCAAGAACAAAAAGAAGGAG 60.244 47.826 0.00 0.00 0.00 3.69
1835 1955 7.190920 ACAAGAAGAAAGATAAAACCGACAG 57.809 36.000 0.00 0.00 0.00 3.51
1962 2091 8.768501 AAACTAAGAAGAAAAAGAAGGATGGT 57.231 30.769 0.00 0.00 0.00 3.55
1963 2092 7.751768 ACTAAGAAGAAAAAGAAGGATGGTG 57.248 36.000 0.00 0.00 0.00 4.17
1964 2093 7.518188 ACTAAGAAGAAAAAGAAGGATGGTGA 58.482 34.615 0.00 0.00 0.00 4.02
1965 2094 6.890979 AAGAAGAAAAAGAAGGATGGTGAG 57.109 37.500 0.00 0.00 0.00 3.51
1966 2095 5.320277 AGAAGAAAAAGAAGGATGGTGAGG 58.680 41.667 0.00 0.00 0.00 3.86
1967 2096 5.073691 AGAAGAAAAAGAAGGATGGTGAGGA 59.926 40.000 0.00 0.00 0.00 3.71
1968 2097 5.527026 AGAAAAAGAAGGATGGTGAGGAT 57.473 39.130 0.00 0.00 0.00 3.24
1969 2098 5.259632 AGAAAAAGAAGGATGGTGAGGATG 58.740 41.667 0.00 0.00 0.00 3.51
1970 2099 3.659183 AAAGAAGGATGGTGAGGATGG 57.341 47.619 0.00 0.00 0.00 3.51
2011 2140 8.888716 AGAAGAAAGACAAAGAGAAGAAGAAAC 58.111 33.333 0.00 0.00 0.00 2.78
2132 2261 1.487976 CATCCTAAGGCAGCTGAAGGA 59.512 52.381 20.43 21.52 40.50 3.36
2133 2262 1.198713 TCCTAAGGCAGCTGAAGGAG 58.801 55.000 20.43 8.49 32.60 3.69
2134 2263 1.198713 CCTAAGGCAGCTGAAGGAGA 58.801 55.000 20.43 0.00 0.00 3.71
2135 2264 1.556911 CCTAAGGCAGCTGAAGGAGAA 59.443 52.381 20.43 0.00 0.00 2.87
2136 2265 2.419851 CCTAAGGCAGCTGAAGGAGAAG 60.420 54.545 20.43 4.47 0.00 2.85
2137 2266 0.327591 AAGGCAGCTGAAGGAGAAGG 59.672 55.000 20.43 0.00 0.00 3.46
2435 2564 3.260380 CCCATTAAACATGTTTGCTCCCA 59.740 43.478 29.72 9.37 34.23 4.37
2480 2609 4.455877 GCTAACATGTTCTTTGTAGCTGGT 59.544 41.667 15.85 0.00 0.00 4.00
2589 2719 4.891168 TCAGCGTATGGTCAGTTAATCCTA 59.109 41.667 0.00 0.00 0.00 2.94
2603 2733 7.841729 TCAGTTAATCCTAGAGATCAAGGAGTT 59.158 37.037 14.38 11.44 32.47 3.01
2620 2750 6.245890 AGGAGTTTGATGAATAGAAGGGAG 57.754 41.667 0.00 0.00 0.00 4.30
2621 2751 5.728741 AGGAGTTTGATGAATAGAAGGGAGT 59.271 40.000 0.00 0.00 0.00 3.85
2622 2752 6.216456 AGGAGTTTGATGAATAGAAGGGAGTT 59.784 38.462 0.00 0.00 0.00 3.01
2623 2753 6.887002 GGAGTTTGATGAATAGAAGGGAGTTT 59.113 38.462 0.00 0.00 0.00 2.66
2624 2754 7.394641 GGAGTTTGATGAATAGAAGGGAGTTTT 59.605 37.037 0.00 0.00 0.00 2.43
2625 2755 8.712228 AGTTTGATGAATAGAAGGGAGTTTTT 57.288 30.769 0.00 0.00 0.00 1.94
2626 2756 9.807921 AGTTTGATGAATAGAAGGGAGTTTTTA 57.192 29.630 0.00 0.00 0.00 1.52
2627 2757 9.841880 GTTTGATGAATAGAAGGGAGTTTTTAC 57.158 33.333 0.00 0.00 0.00 2.01
2628 2758 8.575649 TTGATGAATAGAAGGGAGTTTTTACC 57.424 34.615 0.00 0.00 0.00 2.85
2629 2759 7.928873 TGATGAATAGAAGGGAGTTTTTACCT 58.071 34.615 0.00 0.00 35.78 3.08
2630 2760 8.047310 TGATGAATAGAAGGGAGTTTTTACCTC 58.953 37.037 0.00 0.00 32.29 3.85
2631 2761 7.324388 TGAATAGAAGGGAGTTTTTACCTCA 57.676 36.000 0.00 0.00 32.29 3.86
2632 2762 7.394816 TGAATAGAAGGGAGTTTTTACCTCAG 58.605 38.462 0.00 0.00 32.29 3.35
2633 2763 7.236847 TGAATAGAAGGGAGTTTTTACCTCAGA 59.763 37.037 0.00 0.00 32.29 3.27
2634 2764 5.906772 AGAAGGGAGTTTTTACCTCAGAA 57.093 39.130 0.00 0.00 32.29 3.02
2635 2765 6.262056 AGAAGGGAGTTTTTACCTCAGAAA 57.738 37.500 0.00 0.00 32.29 2.52
2636 2766 6.669631 AGAAGGGAGTTTTTACCTCAGAAAA 58.330 36.000 0.00 0.00 32.29 2.29
2637 2767 7.298374 AGAAGGGAGTTTTTACCTCAGAAAAT 58.702 34.615 0.00 0.00 32.29 1.82
2638 2768 7.785028 AGAAGGGAGTTTTTACCTCAGAAAATT 59.215 33.333 0.00 0.00 32.29 1.82
2639 2769 7.526142 AGGGAGTTTTTACCTCAGAAAATTC 57.474 36.000 0.00 0.00 33.39 2.17
2640 2770 7.066781 AGGGAGTTTTTACCTCAGAAAATTCA 58.933 34.615 0.00 0.00 34.86 2.57
2641 2771 7.730332 AGGGAGTTTTTACCTCAGAAAATTCAT 59.270 33.333 0.00 0.00 34.86 2.57
2642 2772 8.029522 GGGAGTTTTTACCTCAGAAAATTCATC 58.970 37.037 0.00 0.00 34.86 2.92
2643 2773 8.576442 GGAGTTTTTACCTCAGAAAATTCATCA 58.424 33.333 0.00 0.00 34.86 3.07
2649 2779 8.648557 TTACCTCAGAAAATTCATCATAGTCG 57.351 34.615 0.00 0.00 0.00 4.18
2701 2831 2.805353 CGCACCGAGAGAACCACG 60.805 66.667 0.00 0.00 0.00 4.94
2705 2835 2.125912 CCGAGAGAACCACGGCTG 60.126 66.667 0.00 0.00 40.19 4.85
2734 2864 5.519206 GGTACACTCGATTTCACCTTGTATC 59.481 44.000 0.00 0.00 0.00 2.24
2753 2883 1.089920 CGAGGATTTGTGGCCTCTTG 58.910 55.000 3.32 0.00 46.75 3.02
2760 2890 4.462483 GGATTTGTGGCCTCTTGATTGTAA 59.538 41.667 3.32 0.00 0.00 2.41
2771 2901 5.702670 CCTCTTGATTGTAACACTGTGACAT 59.297 40.000 15.86 2.92 25.72 3.06
2785 2915 7.041107 ACACTGTGACATTGCAATAAAAACTT 58.959 30.769 15.86 0.00 0.00 2.66
2790 2920 7.768120 TGTGACATTGCAATAAAAACTTCCTTT 59.232 29.630 12.53 0.00 0.00 3.11
2795 2925 6.493189 TGCAATAAAAACTTCCTTTTCCCT 57.507 33.333 0.00 0.00 30.24 4.20
2797 2927 6.098982 TGCAATAAAAACTTCCTTTTCCCTGA 59.901 34.615 0.00 0.00 30.24 3.86
2981 3124 3.476552 TCTTGACCATCACAGGTTGAAC 58.523 45.455 0.00 0.00 43.38 3.18
3002 3145 5.683876 ACTATATGATGTATGCACCTCCC 57.316 43.478 0.00 0.00 0.00 4.30
3182 3435 1.674962 CGAAAGGTACTACTCCCTCCG 59.325 57.143 0.00 0.00 38.49 4.63
3183 3436 2.732763 GAAAGGTACTACTCCCTCCGT 58.267 52.381 0.00 0.00 38.49 4.69
3184 3437 2.433662 AAGGTACTACTCCCTCCGTC 57.566 55.000 0.00 0.00 38.49 4.79
3185 3438 0.550432 AGGTACTACTCCCTCCGTCC 59.450 60.000 0.00 0.00 36.02 4.79
3186 3439 0.257039 GGTACTACTCCCTCCGTCCA 59.743 60.000 0.00 0.00 0.00 4.02
3187 3440 1.677942 GTACTACTCCCTCCGTCCAG 58.322 60.000 0.00 0.00 0.00 3.86
3188 3441 1.211457 GTACTACTCCCTCCGTCCAGA 59.789 57.143 0.00 0.00 0.00 3.86
3189 3442 0.702902 ACTACTCCCTCCGTCCAGAA 59.297 55.000 0.00 0.00 0.00 3.02
3190 3443 1.288335 ACTACTCCCTCCGTCCAGAAT 59.712 52.381 0.00 0.00 0.00 2.40
3191 3444 2.292323 ACTACTCCCTCCGTCCAGAATT 60.292 50.000 0.00 0.00 0.00 2.17
3192 3445 2.544844 ACTCCCTCCGTCCAGAATTA 57.455 50.000 0.00 0.00 0.00 1.40
3193 3446 2.108970 ACTCCCTCCGTCCAGAATTAC 58.891 52.381 0.00 0.00 0.00 1.89
3194 3447 2.292323 ACTCCCTCCGTCCAGAATTACT 60.292 50.000 0.00 0.00 0.00 2.24
3195 3448 2.766828 CTCCCTCCGTCCAGAATTACTT 59.233 50.000 0.00 0.00 0.00 2.24
3196 3449 2.500098 TCCCTCCGTCCAGAATTACTTG 59.500 50.000 0.00 0.00 0.00 3.16
3197 3450 2.236395 CCCTCCGTCCAGAATTACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
3198 3451 3.522553 CCTCCGTCCAGAATTACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
3199 3452 3.056107 CCTCCGTCCAGAATTACTTGTCA 60.056 47.826 0.00 0.00 0.00 3.58
3200 3453 3.921677 TCCGTCCAGAATTACTTGTCAC 58.078 45.455 0.00 0.00 0.00 3.67
3201 3454 3.000727 CCGTCCAGAATTACTTGTCACC 58.999 50.000 0.00 0.00 0.00 4.02
3202 3455 3.556213 CCGTCCAGAATTACTTGTCACCA 60.556 47.826 0.00 0.00 0.00 4.17
3203 3456 4.062293 CGTCCAGAATTACTTGTCACCAA 58.938 43.478 0.00 0.00 0.00 3.67
3204 3457 4.513692 CGTCCAGAATTACTTGTCACCAAA 59.486 41.667 0.00 0.00 0.00 3.28
3205 3458 5.008217 CGTCCAGAATTACTTGTCACCAAAA 59.992 40.000 0.00 0.00 0.00 2.44
3206 3459 6.293955 CGTCCAGAATTACTTGTCACCAAAAT 60.294 38.462 0.00 0.00 0.00 1.82
3207 3460 6.863126 GTCCAGAATTACTTGTCACCAAAATG 59.137 38.462 0.00 0.00 0.00 2.32
3208 3461 6.015519 TCCAGAATTACTTGTCACCAAAATGG 60.016 38.462 0.00 0.00 45.02 3.16
3209 3462 6.015519 CCAGAATTACTTGTCACCAAAATGGA 60.016 38.462 2.85 0.00 40.96 3.41
3210 3463 7.309990 CCAGAATTACTTGTCACCAAAATGGAT 60.310 37.037 2.85 0.00 40.96 3.41
3211 3464 7.543172 CAGAATTACTTGTCACCAAAATGGATG 59.457 37.037 2.85 0.00 40.96 3.51
3212 3465 6.916360 ATTACTTGTCACCAAAATGGATGT 57.084 33.333 2.85 0.00 40.96 3.06
3213 3466 8.415950 AATTACTTGTCACCAAAATGGATGTA 57.584 30.769 2.85 0.00 40.96 2.29
3214 3467 8.593945 ATTACTTGTCACCAAAATGGATGTAT 57.406 30.769 2.85 0.00 40.96 2.29
3215 3468 6.515272 ACTTGTCACCAAAATGGATGTATC 57.485 37.500 2.85 0.00 40.96 2.24
3216 3469 6.248433 ACTTGTCACCAAAATGGATGTATCT 58.752 36.000 2.85 0.00 40.96 1.98
3217 3470 7.402054 ACTTGTCACCAAAATGGATGTATCTA 58.598 34.615 2.85 0.00 40.96 1.98
3218 3471 7.554118 ACTTGTCACCAAAATGGATGTATCTAG 59.446 37.037 2.85 0.00 40.96 2.43
3219 3472 7.194112 TGTCACCAAAATGGATGTATCTAGA 57.806 36.000 2.85 0.00 40.96 2.43
3220 3473 7.629157 TGTCACCAAAATGGATGTATCTAGAA 58.371 34.615 2.85 0.00 40.96 2.10
3221 3474 7.552687 TGTCACCAAAATGGATGTATCTAGAAC 59.447 37.037 2.85 0.00 40.96 3.01
3222 3475 7.770897 GTCACCAAAATGGATGTATCTAGAACT 59.229 37.037 2.85 0.00 40.96 3.01
3223 3476 8.988060 TCACCAAAATGGATGTATCTAGAACTA 58.012 33.333 2.85 0.00 40.96 2.24
3224 3477 9.613428 CACCAAAATGGATGTATCTAGAACTAA 57.387 33.333 2.85 0.00 40.96 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 5.885912 AGTGTGGACATGTTGAGTACTTTTT 59.114 36.000 0.00 0.00 0.00 1.94
16 17 5.296780 CAGTGTGGACATGTTGAGTACTTTT 59.703 40.000 0.00 0.00 0.00 2.27
17 18 4.816385 CAGTGTGGACATGTTGAGTACTTT 59.184 41.667 0.00 0.00 0.00 2.66
18 19 4.380531 CAGTGTGGACATGTTGAGTACTT 58.619 43.478 0.00 0.00 0.00 2.24
19 20 3.244215 CCAGTGTGGACATGTTGAGTACT 60.244 47.826 0.00 0.00 40.96 2.73
20 21 3.067106 CCAGTGTGGACATGTTGAGTAC 58.933 50.000 0.00 0.00 40.96 2.73
21 22 2.038426 CCCAGTGTGGACATGTTGAGTA 59.962 50.000 0.00 0.00 40.96 2.59
22 23 1.202806 CCCAGTGTGGACATGTTGAGT 60.203 52.381 0.00 0.00 40.96 3.41
23 24 1.072173 TCCCAGTGTGGACATGTTGAG 59.928 52.381 0.00 0.00 40.96 3.02
24 25 1.135960 TCCCAGTGTGGACATGTTGA 58.864 50.000 0.00 0.00 40.96 3.18
25 26 1.979855 TTCCCAGTGTGGACATGTTG 58.020 50.000 0.00 0.00 40.96 3.33
26 27 2.746279 TTTCCCAGTGTGGACATGTT 57.254 45.000 0.00 0.00 40.96 2.71
27 28 2.091885 ACTTTTCCCAGTGTGGACATGT 60.092 45.455 0.00 0.00 40.96 3.21
28 29 2.294233 CACTTTTCCCAGTGTGGACATG 59.706 50.000 0.00 0.00 40.96 3.21
29 30 2.586425 CACTTTTCCCAGTGTGGACAT 58.414 47.619 0.00 0.00 40.96 3.06
30 31 2.051334 CACTTTTCCCAGTGTGGACA 57.949 50.000 0.00 0.00 40.96 4.02
37 38 1.724582 GCACGCACACTTTTCCCAGT 61.725 55.000 0.00 0.00 0.00 4.00
38 39 1.008538 GCACGCACACTTTTCCCAG 60.009 57.895 0.00 0.00 0.00 4.45
39 40 2.485795 GGCACGCACACTTTTCCCA 61.486 57.895 0.00 0.00 0.00 4.37
40 41 2.335011 GGCACGCACACTTTTCCC 59.665 61.111 0.00 0.00 0.00 3.97
41 42 1.299089 GTGGCACGCACACTTTTCC 60.299 57.895 0.00 0.00 39.55 3.13
42 43 1.299089 GGTGGCACGCACACTTTTC 60.299 57.895 12.17 0.00 43.02 2.29
43 44 2.804856 GGTGGCACGCACACTTTT 59.195 55.556 12.17 0.00 43.02 2.27
44 45 3.582120 CGGTGGCACGCACACTTT 61.582 61.111 12.17 0.00 43.02 2.66
143 156 6.942576 CACAAGGGGAAGAAGAAATAAGAAGA 59.057 38.462 0.00 0.00 0.00 2.87
340 360 3.062466 CTGCGACCTCCTCGGACA 61.062 66.667 0.00 0.00 43.18 4.02
467 488 8.997323 CGAGAGCTAATGATGATAAATTTCCTT 58.003 33.333 0.00 0.00 0.00 3.36
508 529 5.111989 CCACATAAGAACTGACACGATGAT 58.888 41.667 0.00 0.00 0.00 2.45
549 570 1.524355 CAAGATCGCAAGGCTGATACG 59.476 52.381 0.00 0.00 38.47 3.06
633 654 4.933330 ACGAACTGTACTGCCATATACTG 58.067 43.478 0.00 0.00 0.00 2.74
701 728 8.073167 CGTCGGAGGAATGAATATATCTAGATG 58.927 40.741 15.79 0.00 0.00 2.90
702 729 7.993758 TCGTCGGAGGAATGAATATATCTAGAT 59.006 37.037 10.73 10.73 0.00 1.98
705 732 7.110810 ACTCGTCGGAGGAATGAATATATCTA 58.889 38.462 1.73 0.00 44.93 1.98
706 733 5.946972 ACTCGTCGGAGGAATGAATATATCT 59.053 40.000 1.73 0.00 44.93 1.98
707 734 6.197364 ACTCGTCGGAGGAATGAATATATC 57.803 41.667 1.73 0.00 44.93 1.63
708 735 7.883391 ATACTCGTCGGAGGAATGAATATAT 57.117 36.000 1.73 0.00 44.93 0.86
709 736 7.698506 AATACTCGTCGGAGGAATGAATATA 57.301 36.000 1.73 0.00 44.93 0.86
710 737 6.591750 AATACTCGTCGGAGGAATGAATAT 57.408 37.500 1.73 0.00 44.93 1.28
711 738 6.401047 AAATACTCGTCGGAGGAATGAATA 57.599 37.500 1.73 0.00 44.93 1.75
712 739 4.939052 AATACTCGTCGGAGGAATGAAT 57.061 40.909 1.73 0.00 44.93 2.57
713 740 4.441079 GGAAATACTCGTCGGAGGAATGAA 60.441 45.833 1.73 0.00 44.93 2.57
714 741 3.067742 GGAAATACTCGTCGGAGGAATGA 59.932 47.826 1.73 0.00 44.93 2.57
715 742 3.381949 GGAAATACTCGTCGGAGGAATG 58.618 50.000 1.73 0.00 44.93 2.67
716 743 2.034305 CGGAAATACTCGTCGGAGGAAT 59.966 50.000 1.73 0.00 44.93 3.01
717 744 1.402968 CGGAAATACTCGTCGGAGGAA 59.597 52.381 1.73 0.00 44.93 3.36
718 745 1.019673 CGGAAATACTCGTCGGAGGA 58.980 55.000 0.00 0.00 44.93 3.71
719 746 0.030369 CCGGAAATACTCGTCGGAGG 59.970 60.000 0.00 0.00 44.93 4.30
720 747 1.019673 TCCGGAAATACTCGTCGGAG 58.980 55.000 0.00 0.00 43.84 4.63
721 748 0.734889 GTCCGGAAATACTCGTCGGA 59.265 55.000 5.23 0.00 46.06 4.55
722 749 0.590732 CGTCCGGAAATACTCGTCGG 60.591 60.000 5.23 0.00 41.80 4.79
723 750 0.590732 CCGTCCGGAAATACTCGTCG 60.591 60.000 5.23 1.25 37.50 5.12
724 751 0.734889 TCCGTCCGGAAATACTCGTC 59.265 55.000 5.23 0.00 42.05 4.20
725 752 0.737219 CTCCGTCCGGAAATACTCGT 59.263 55.000 5.23 0.00 44.66 4.18
726 753 0.030369 CCTCCGTCCGGAAATACTCG 59.970 60.000 5.23 3.90 44.66 4.18
727 754 0.388294 CCCTCCGTCCGGAAATACTC 59.612 60.000 5.23 0.00 44.66 2.59
728 755 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
729 756 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
730 757 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
731 758 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
732 759 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
733 760 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
734 761 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
735 762 1.817447 GAATATACTCCCTCCGTCCGG 59.183 57.143 0.00 0.00 0.00 5.14
736 763 2.792878 AGAATATACTCCCTCCGTCCG 58.207 52.381 0.00 0.00 0.00 4.79
737 764 3.695556 GCTAGAATATACTCCCTCCGTCC 59.304 52.174 0.00 0.00 0.00 4.79
738 765 4.333690 TGCTAGAATATACTCCCTCCGTC 58.666 47.826 0.00 0.00 0.00 4.79
739 766 4.383931 TGCTAGAATATACTCCCTCCGT 57.616 45.455 0.00 0.00 0.00 4.69
740 767 5.923733 AATGCTAGAATATACTCCCTCCG 57.076 43.478 0.00 0.00 0.00 4.63
741 768 5.877564 GCAAATGCTAGAATATACTCCCTCC 59.122 44.000 0.00 0.00 38.21 4.30
742 769 6.467677 TGCAAATGCTAGAATATACTCCCTC 58.532 40.000 6.97 0.00 42.66 4.30
743 770 6.439636 TGCAAATGCTAGAATATACTCCCT 57.560 37.500 6.97 0.00 42.66 4.20
744 771 7.693969 AATGCAAATGCTAGAATATACTCCC 57.306 36.000 6.97 0.00 42.66 4.30
817 844 1.782044 CAAATGGAACCAAAGCCACG 58.218 50.000 0.00 0.00 36.92 4.94
846 873 1.527311 GGCTATCGGCGATTTCAGTTC 59.473 52.381 28.93 11.77 42.94 3.01
916 943 8.099364 ACGTTCTGTCACTATCAATTCAATTT 57.901 30.769 0.00 0.00 0.00 1.82
943 970 4.946157 AGAACCAGAATGACCTGCATTTAG 59.054 41.667 0.00 0.00 46.90 1.85
1007 1034 4.157656 ACTCATCCTTCGACTTCTTCTCTG 59.842 45.833 0.00 0.00 0.00 3.35
1110 1137 1.214175 TCCTTCTCCACAACCTTTGCA 59.786 47.619 0.00 0.00 0.00 4.08
1113 1140 3.181439 CCTCTTCCTTCTCCACAACCTTT 60.181 47.826 0.00 0.00 0.00 3.11
1204 1231 5.429957 ACATGCTTCTCTGACTTGTTTTC 57.570 39.130 0.00 0.00 0.00 2.29
1242 1269 2.356382 CGTCTTACTCGCCTTCTGATCT 59.644 50.000 0.00 0.00 0.00 2.75
1251 1278 2.358939 TTTCCTTCGTCTTACTCGCC 57.641 50.000 0.00 0.00 0.00 5.54
1252 1279 5.803967 TCTTATTTTCCTTCGTCTTACTCGC 59.196 40.000 0.00 0.00 0.00 5.03
1253 1280 7.009357 CCTTCTTATTTTCCTTCGTCTTACTCG 59.991 40.741 0.00 0.00 0.00 4.18
1254 1281 7.201539 GCCTTCTTATTTTCCTTCGTCTTACTC 60.202 40.741 0.00 0.00 0.00 2.59
1255 1282 6.594547 GCCTTCTTATTTTCCTTCGTCTTACT 59.405 38.462 0.00 0.00 0.00 2.24
1256 1283 6.370718 TGCCTTCTTATTTTCCTTCGTCTTAC 59.629 38.462 0.00 0.00 0.00 2.34
1257 1284 6.469410 TGCCTTCTTATTTTCCTTCGTCTTA 58.531 36.000 0.00 0.00 0.00 2.10
1258 1285 5.313712 TGCCTTCTTATTTTCCTTCGTCTT 58.686 37.500 0.00 0.00 0.00 3.01
1259 1286 4.906618 TGCCTTCTTATTTTCCTTCGTCT 58.093 39.130 0.00 0.00 0.00 4.18
1260 1287 4.935808 TCTGCCTTCTTATTTTCCTTCGTC 59.064 41.667 0.00 0.00 0.00 4.20
1261 1288 4.906618 TCTGCCTTCTTATTTTCCTTCGT 58.093 39.130 0.00 0.00 0.00 3.85
1262 1289 5.178797 TCTCTGCCTTCTTATTTTCCTTCG 58.821 41.667 0.00 0.00 0.00 3.79
1263 1290 7.040409 TGTTTCTCTGCCTTCTTATTTTCCTTC 60.040 37.037 0.00 0.00 0.00 3.46
1264 1291 6.777580 TGTTTCTCTGCCTTCTTATTTTCCTT 59.222 34.615 0.00 0.00 0.00 3.36
1265 1292 6.306987 TGTTTCTCTGCCTTCTTATTTTCCT 58.693 36.000 0.00 0.00 0.00 3.36
1266 1293 6.575162 TGTTTCTCTGCCTTCTTATTTTCC 57.425 37.500 0.00 0.00 0.00 3.13
1267 1294 7.820648 TCATGTTTCTCTGCCTTCTTATTTTC 58.179 34.615 0.00 0.00 0.00 2.29
1268 1295 7.765695 TCATGTTTCTCTGCCTTCTTATTTT 57.234 32.000 0.00 0.00 0.00 1.82
1269 1296 7.667219 TCTTCATGTTTCTCTGCCTTCTTATTT 59.333 33.333 0.00 0.00 0.00 1.40
1270 1297 7.170965 TCTTCATGTTTCTCTGCCTTCTTATT 58.829 34.615 0.00 0.00 0.00 1.40
1271 1298 6.715280 TCTTCATGTTTCTCTGCCTTCTTAT 58.285 36.000 0.00 0.00 0.00 1.73
1272 1299 6.114187 TCTTCATGTTTCTCTGCCTTCTTA 57.886 37.500 0.00 0.00 0.00 2.10
1273 1300 4.978099 TCTTCATGTTTCTCTGCCTTCTT 58.022 39.130 0.00 0.00 0.00 2.52
1274 1301 4.630644 TCTTCATGTTTCTCTGCCTTCT 57.369 40.909 0.00 0.00 0.00 2.85
1275 1302 4.096081 CCATCTTCATGTTTCTCTGCCTTC 59.904 45.833 0.00 0.00 0.00 3.46
1276 1303 4.015084 CCATCTTCATGTTTCTCTGCCTT 58.985 43.478 0.00 0.00 0.00 4.35
1277 1304 3.009916 ACCATCTTCATGTTTCTCTGCCT 59.990 43.478 0.00 0.00 0.00 4.75
1278 1305 3.350833 ACCATCTTCATGTTTCTCTGCC 58.649 45.455 0.00 0.00 0.00 4.85
1279 1306 5.877012 TCTTACCATCTTCATGTTTCTCTGC 59.123 40.000 0.00 0.00 0.00 4.26
1280 1307 7.065563 CCTTCTTACCATCTTCATGTTTCTCTG 59.934 40.741 0.00 0.00 0.00 3.35
1281 1308 7.038017 TCCTTCTTACCATCTTCATGTTTCTCT 60.038 37.037 0.00 0.00 0.00 3.10
1282 1309 7.106239 TCCTTCTTACCATCTTCATGTTTCTC 58.894 38.462 0.00 0.00 0.00 2.87
1283 1310 7.020827 TCCTTCTTACCATCTTCATGTTTCT 57.979 36.000 0.00 0.00 0.00 2.52
1284 1311 7.687941 TTCCTTCTTACCATCTTCATGTTTC 57.312 36.000 0.00 0.00 0.00 2.78
1285 1312 8.477419 TTTTCCTTCTTACCATCTTCATGTTT 57.523 30.769 0.00 0.00 0.00 2.83
1286 1313 7.944554 TCTTTTCCTTCTTACCATCTTCATGTT 59.055 33.333 0.00 0.00 0.00 2.71
1287 1314 7.461749 TCTTTTCCTTCTTACCATCTTCATGT 58.538 34.615 0.00 0.00 0.00 3.21
1288 1315 7.928307 TCTTTTCCTTCTTACCATCTTCATG 57.072 36.000 0.00 0.00 0.00 3.07
1289 1316 8.386264 TCTTCTTTTCCTTCTTACCATCTTCAT 58.614 33.333 0.00 0.00 0.00 2.57
1290 1317 7.745717 TCTTCTTTTCCTTCTTACCATCTTCA 58.254 34.615 0.00 0.00 0.00 3.02
1291 1318 8.622948 TTCTTCTTTTCCTTCTTACCATCTTC 57.377 34.615 0.00 0.00 0.00 2.87
1292 1319 8.221251 ACTTCTTCTTTTCCTTCTTACCATCTT 58.779 33.333 0.00 0.00 0.00 2.40
1293 1320 7.750655 ACTTCTTCTTTTCCTTCTTACCATCT 58.249 34.615 0.00 0.00 0.00 2.90
1294 1321 7.987750 ACTTCTTCTTTTCCTTCTTACCATC 57.012 36.000 0.00 0.00 0.00 3.51
1295 1322 9.508642 CTAACTTCTTCTTTTCCTTCTTACCAT 57.491 33.333 0.00 0.00 0.00 3.55
1296 1323 8.711170 TCTAACTTCTTCTTTTCCTTCTTACCA 58.289 33.333 0.00 0.00 0.00 3.25
1297 1324 9.210329 CTCTAACTTCTTCTTTTCCTTCTTACC 57.790 37.037 0.00 0.00 0.00 2.85
1298 1325 9.984190 TCTCTAACTTCTTCTTTTCCTTCTTAC 57.016 33.333 0.00 0.00 0.00 2.34
1300 1327 9.554395 CTTCTCTAACTTCTTCTTTTCCTTCTT 57.446 33.333 0.00 0.00 0.00 2.52
1301 1328 7.659799 GCTTCTCTAACTTCTTCTTTTCCTTCT 59.340 37.037 0.00 0.00 0.00 2.85
1302 1329 7.442666 TGCTTCTCTAACTTCTTCTTTTCCTTC 59.557 37.037 0.00 0.00 0.00 3.46
1303 1330 7.283329 TGCTTCTCTAACTTCTTCTTTTCCTT 58.717 34.615 0.00 0.00 0.00 3.36
1304 1331 6.831976 TGCTTCTCTAACTTCTTCTTTTCCT 58.168 36.000 0.00 0.00 0.00 3.36
1305 1332 7.389053 TCATGCTTCTCTAACTTCTTCTTTTCC 59.611 37.037 0.00 0.00 0.00 3.13
1306 1333 8.316640 TCATGCTTCTCTAACTTCTTCTTTTC 57.683 34.615 0.00 0.00 0.00 2.29
1307 1334 8.682936 TTCATGCTTCTCTAACTTCTTCTTTT 57.317 30.769 0.00 0.00 0.00 2.27
1308 1335 8.153550 TCTTCATGCTTCTCTAACTTCTTCTTT 58.846 33.333 0.00 0.00 0.00 2.52
1309 1336 7.675062 TCTTCATGCTTCTCTAACTTCTTCTT 58.325 34.615 0.00 0.00 0.00 2.52
1310 1337 7.238486 TCTTCATGCTTCTCTAACTTCTTCT 57.762 36.000 0.00 0.00 0.00 2.85
1311 1338 7.763528 TCATCTTCATGCTTCTCTAACTTCTTC 59.236 37.037 0.00 0.00 0.00 2.87
1312 1339 7.548780 GTCATCTTCATGCTTCTCTAACTTCTT 59.451 37.037 0.00 0.00 0.00 2.52
1313 1340 7.041107 GTCATCTTCATGCTTCTCTAACTTCT 58.959 38.462 0.00 0.00 0.00 2.85
1314 1341 6.019961 CGTCATCTTCATGCTTCTCTAACTTC 60.020 42.308 0.00 0.00 0.00 3.01
1315 1342 5.809562 CGTCATCTTCATGCTTCTCTAACTT 59.190 40.000 0.00 0.00 0.00 2.66
1316 1343 5.347342 CGTCATCTTCATGCTTCTCTAACT 58.653 41.667 0.00 0.00 0.00 2.24
1317 1344 4.505922 CCGTCATCTTCATGCTTCTCTAAC 59.494 45.833 0.00 0.00 0.00 2.34
1318 1345 4.442052 CCCGTCATCTTCATGCTTCTCTAA 60.442 45.833 0.00 0.00 0.00 2.10
1319 1346 3.068732 CCCGTCATCTTCATGCTTCTCTA 59.931 47.826 0.00 0.00 0.00 2.43
1320 1347 2.158986 CCCGTCATCTTCATGCTTCTCT 60.159 50.000 0.00 0.00 0.00 3.10
1321 1348 2.159043 TCCCGTCATCTTCATGCTTCTC 60.159 50.000 0.00 0.00 0.00 2.87
1322 1349 1.833630 TCCCGTCATCTTCATGCTTCT 59.166 47.619 0.00 0.00 0.00 2.85
1323 1350 2.315925 TCCCGTCATCTTCATGCTTC 57.684 50.000 0.00 0.00 0.00 3.86
1324 1351 2.237143 TCTTCCCGTCATCTTCATGCTT 59.763 45.455 0.00 0.00 0.00 3.91
1325 1352 1.833630 TCTTCCCGTCATCTTCATGCT 59.166 47.619 0.00 0.00 0.00 3.79
1326 1353 1.936547 GTCTTCCCGTCATCTTCATGC 59.063 52.381 0.00 0.00 0.00 4.06
1327 1354 3.251479 TGTCTTCCCGTCATCTTCATG 57.749 47.619 0.00 0.00 0.00 3.07
1328 1355 3.261897 ACTTGTCTTCCCGTCATCTTCAT 59.738 43.478 0.00 0.00 0.00 2.57
1329 1356 2.632996 ACTTGTCTTCCCGTCATCTTCA 59.367 45.455 0.00 0.00 0.00 3.02
1330 1357 3.320673 ACTTGTCTTCCCGTCATCTTC 57.679 47.619 0.00 0.00 0.00 2.87
1331 1358 4.527038 TCTTACTTGTCTTCCCGTCATCTT 59.473 41.667 0.00 0.00 0.00 2.40
1332 1359 4.087182 TCTTACTTGTCTTCCCGTCATCT 58.913 43.478 0.00 0.00 0.00 2.90
1333 1360 4.451629 TCTTACTTGTCTTCCCGTCATC 57.548 45.455 0.00 0.00 0.00 2.92
1334 1361 4.322801 CCTTCTTACTTGTCTTCCCGTCAT 60.323 45.833 0.00 0.00 0.00 3.06
1335 1362 3.006537 CCTTCTTACTTGTCTTCCCGTCA 59.993 47.826 0.00 0.00 0.00 4.35
1336 1363 3.257624 TCCTTCTTACTTGTCTTCCCGTC 59.742 47.826 0.00 0.00 0.00 4.79
1337 1364 3.236896 TCCTTCTTACTTGTCTTCCCGT 58.763 45.455 0.00 0.00 0.00 5.28
1338 1365 3.955650 TCCTTCTTACTTGTCTTCCCG 57.044 47.619 0.00 0.00 0.00 5.14
1339 1366 8.631480 TTTTTATCCTTCTTACTTGTCTTCCC 57.369 34.615 0.00 0.00 0.00 3.97
1340 1367 8.731605 CCTTTTTATCCTTCTTACTTGTCTTCC 58.268 37.037 0.00 0.00 0.00 3.46
1341 1368 9.503399 TCCTTTTTATCCTTCTTACTTGTCTTC 57.497 33.333 0.00 0.00 0.00 2.87
1342 1369 9.508642 CTCCTTTTTATCCTTCTTACTTGTCTT 57.491 33.333 0.00 0.00 0.00 3.01
1343 1370 8.881262 TCTCCTTTTTATCCTTCTTACTTGTCT 58.119 33.333 0.00 0.00 0.00 3.41
1527 1641 3.254411 CCTTCTTCTTTGCCTTGTCCTTC 59.746 47.826 0.00 0.00 0.00 3.46
1962 2091 1.626350 CCTTCTTCCTCCCCATCCTCA 60.626 57.143 0.00 0.00 0.00 3.86
1963 2092 1.135960 CCTTCTTCCTCCCCATCCTC 58.864 60.000 0.00 0.00 0.00 3.71
1964 2093 0.423544 ACCTTCTTCCTCCCCATCCT 59.576 55.000 0.00 0.00 0.00 3.24
1965 2094 2.191981 TACCTTCTTCCTCCCCATCC 57.808 55.000 0.00 0.00 0.00 3.51
1966 2095 3.385115 TCTTACCTTCTTCCTCCCCATC 58.615 50.000 0.00 0.00 0.00 3.51
1967 2096 3.508952 TCTTACCTTCTTCCTCCCCAT 57.491 47.619 0.00 0.00 0.00 4.00
1968 2097 3.181399 TCTTCTTACCTTCTTCCTCCCCA 60.181 47.826 0.00 0.00 0.00 4.96
1969 2098 3.451890 TCTTCTTACCTTCTTCCTCCCC 58.548 50.000 0.00 0.00 0.00 4.81
1970 2099 5.248705 TCTTTCTTCTTACCTTCTTCCTCCC 59.751 44.000 0.00 0.00 0.00 4.30
2011 2140 3.058160 CTCCTTGCCGCCCTTGTG 61.058 66.667 0.00 0.00 0.00 3.33
2132 2261 0.333312 TCCCTCTTCGAGCTCCTTCT 59.667 55.000 8.47 0.00 0.00 2.85
2133 2262 1.187087 TTCCCTCTTCGAGCTCCTTC 58.813 55.000 8.47 0.00 0.00 3.46
2134 2263 1.484240 CATTCCCTCTTCGAGCTCCTT 59.516 52.381 8.47 0.00 0.00 3.36
2135 2264 1.118838 CATTCCCTCTTCGAGCTCCT 58.881 55.000 8.47 0.00 0.00 3.69
2136 2265 1.115467 TCATTCCCTCTTCGAGCTCC 58.885 55.000 8.47 0.00 0.00 4.70
2137 2266 1.202475 GGTCATTCCCTCTTCGAGCTC 60.202 57.143 2.73 2.73 0.00 4.09
2435 2564 3.879295 CAGATGCATAACGAAAGGACCAT 59.121 43.478 0.00 0.00 0.00 3.55
2480 2609 2.035961 GGTAGAGACATGCAGCGGAATA 59.964 50.000 0.00 0.00 0.00 1.75
2603 2733 8.390921 AGGTAAAAACTCCCTTCTATTCATCAA 58.609 33.333 0.00 0.00 0.00 2.57
2610 2740 7.569599 TTCTGAGGTAAAAACTCCCTTCTAT 57.430 36.000 0.00 0.00 34.06 1.98
2614 2744 7.563556 TGAATTTTCTGAGGTAAAAACTCCCTT 59.436 33.333 0.00 0.00 34.06 3.95
2623 2753 9.098355 CGACTATGATGAATTTTCTGAGGTAAA 57.902 33.333 0.00 0.00 0.00 2.01
2624 2754 7.710907 CCGACTATGATGAATTTTCTGAGGTAA 59.289 37.037 0.00 0.00 0.00 2.85
2625 2755 7.069455 TCCGACTATGATGAATTTTCTGAGGTA 59.931 37.037 0.00 0.00 0.00 3.08
2626 2756 6.051717 CCGACTATGATGAATTTTCTGAGGT 58.948 40.000 0.00 0.00 0.00 3.85
2627 2757 6.283694 TCCGACTATGATGAATTTTCTGAGG 58.716 40.000 0.00 0.00 0.00 3.86
2628 2758 7.776933 TTCCGACTATGATGAATTTTCTGAG 57.223 36.000 0.00 0.00 0.00 3.35
2629 2759 9.481340 CTATTCCGACTATGATGAATTTTCTGA 57.519 33.333 0.00 0.00 0.00 3.27
2630 2760 9.265901 ACTATTCCGACTATGATGAATTTTCTG 57.734 33.333 0.00 0.00 0.00 3.02
2631 2761 9.265901 CACTATTCCGACTATGATGAATTTTCT 57.734 33.333 0.00 0.00 0.00 2.52
2632 2762 9.046296 ACACTATTCCGACTATGATGAATTTTC 57.954 33.333 0.00 0.00 0.00 2.29
2633 2763 8.964476 ACACTATTCCGACTATGATGAATTTT 57.036 30.769 0.00 0.00 0.00 1.82
2634 2764 8.830580 CAACACTATTCCGACTATGATGAATTT 58.169 33.333 0.00 0.00 0.00 1.82
2635 2765 7.041780 GCAACACTATTCCGACTATGATGAATT 60.042 37.037 0.00 0.00 0.00 2.17
2636 2766 6.425114 GCAACACTATTCCGACTATGATGAAT 59.575 38.462 0.00 0.00 0.00 2.57
2637 2767 5.753438 GCAACACTATTCCGACTATGATGAA 59.247 40.000 0.00 0.00 0.00 2.57
2638 2768 5.163457 TGCAACACTATTCCGACTATGATGA 60.163 40.000 0.00 0.00 0.00 2.92
2639 2769 5.049828 TGCAACACTATTCCGACTATGATG 58.950 41.667 0.00 0.00 0.00 3.07
2640 2770 5.069119 TCTGCAACACTATTCCGACTATGAT 59.931 40.000 0.00 0.00 0.00 2.45
2641 2771 4.401202 TCTGCAACACTATTCCGACTATGA 59.599 41.667 0.00 0.00 0.00 2.15
2642 2772 4.682787 TCTGCAACACTATTCCGACTATG 58.317 43.478 0.00 0.00 0.00 2.23
2643 2773 5.533482 GATCTGCAACACTATTCCGACTAT 58.467 41.667 0.00 0.00 0.00 2.12
2644 2774 4.497507 CGATCTGCAACACTATTCCGACTA 60.498 45.833 0.00 0.00 0.00 2.59
2645 2775 3.735208 CGATCTGCAACACTATTCCGACT 60.735 47.826 0.00 0.00 0.00 4.18
2646 2776 2.535984 CGATCTGCAACACTATTCCGAC 59.464 50.000 0.00 0.00 0.00 4.79
2647 2777 2.481276 CCGATCTGCAACACTATTCCGA 60.481 50.000 0.00 0.00 0.00 4.55
2648 2778 1.860950 CCGATCTGCAACACTATTCCG 59.139 52.381 0.00 0.00 0.00 4.30
2649 2779 2.906354 ACCGATCTGCAACACTATTCC 58.094 47.619 0.00 0.00 0.00 3.01
2710 2840 3.660865 ACAAGGTGAAATCGAGTGTACC 58.339 45.455 9.92 9.92 0.00 3.34
2723 2853 4.503910 CACAAATCCTCGATACAAGGTGA 58.496 43.478 0.00 0.00 35.29 4.02
2753 2883 5.107109 TGCAATGTCACAGTGTTACAATC 57.893 39.130 13.96 7.13 31.72 2.67
2760 2890 6.572519 AGTTTTTATTGCAATGTCACAGTGT 58.427 32.000 22.27 0.00 31.72 3.55
2771 2901 6.765512 CAGGGAAAAGGAAGTTTTTATTGCAA 59.234 34.615 0.00 0.00 38.54 4.08
2812 2943 6.322201 AGACCAGAGCTTTCATTTTCTTTTCA 59.678 34.615 0.00 0.00 0.00 2.69
2981 3124 5.188555 ACTGGGAGGTGCATACATCATATAG 59.811 44.000 0.00 0.00 39.29 1.31
3077 3223 4.101585 TGCCAGAACAGAGGGACTATAATG 59.898 45.833 0.00 0.00 41.55 1.90
3168 3421 1.211457 TCTGGACGGAGGGAGTAGTAC 59.789 57.143 0.00 0.00 0.00 2.73
3169 3422 1.588239 TCTGGACGGAGGGAGTAGTA 58.412 55.000 0.00 0.00 0.00 1.82
3170 3423 0.702902 TTCTGGACGGAGGGAGTAGT 59.297 55.000 0.00 0.00 0.00 2.73
3171 3424 2.074729 ATTCTGGACGGAGGGAGTAG 57.925 55.000 0.00 0.00 0.00 2.57
3172 3425 2.544844 AATTCTGGACGGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
3173 3426 2.108970 GTAATTCTGGACGGAGGGAGT 58.891 52.381 0.00 0.00 0.00 3.85
3174 3427 2.389715 AGTAATTCTGGACGGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
3175 3428 2.500098 CAAGTAATTCTGGACGGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
3176 3429 2.236395 ACAAGTAATTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
3177 3430 3.056107 TGACAAGTAATTCTGGACGGAGG 60.056 47.826 0.00 0.00 0.00 4.30
3178 3431 3.927142 GTGACAAGTAATTCTGGACGGAG 59.073 47.826 0.00 0.00 0.00 4.63
3179 3432 3.306502 GGTGACAAGTAATTCTGGACGGA 60.307 47.826 0.00 0.00 0.00 4.69
3180 3433 3.000727 GGTGACAAGTAATTCTGGACGG 58.999 50.000 0.00 0.00 0.00 4.79
3181 3434 3.659786 TGGTGACAAGTAATTCTGGACG 58.340 45.455 0.00 0.00 37.44 4.79
3195 3448 7.194112 TCTAGATACATCCATTTTGGTGACA 57.806 36.000 0.00 0.00 39.03 3.58
3196 3449 7.770897 AGTTCTAGATACATCCATTTTGGTGAC 59.229 37.037 0.00 0.00 39.03 3.67
3197 3450 7.861629 AGTTCTAGATACATCCATTTTGGTGA 58.138 34.615 0.00 0.00 39.03 4.02
3198 3451 9.613428 TTAGTTCTAGATACATCCATTTTGGTG 57.387 33.333 0.00 0.00 39.03 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.