Multiple sequence alignment - TraesCS2B01G270300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G270300 chr2B 100.000 3073 0 0 1 3073 368616853 368613781 0.000000e+00 5675.0
1 TraesCS2B01G270300 chr2B 98.851 87 1 0 2817 2903 315887297 315887383 4.100000e-34 156.0
2 TraesCS2B01G270300 chr2B 86.087 115 13 3 2674 2786 402546304 402546417 1.500000e-23 121.0
3 TraesCS2B01G270300 chr2B 87.952 83 8 2 2430 2510 85641926 85642008 2.520000e-16 97.1
4 TraesCS2B01G270300 chr2B 76.238 202 34 8 2333 2520 659651025 659650824 9.070000e-16 95.3
5 TraesCS2B01G270300 chr2A 96.135 1837 57 8 473 2299 365286254 365284422 0.000000e+00 2987.0
6 TraesCS2B01G270300 chr2A 91.222 581 47 4 2326 2903 365284326 365283747 0.000000e+00 787.0
7 TraesCS2B01G270300 chr2A 82.672 479 63 12 1 468 716527548 716527079 1.030000e-109 407.0
8 TraesCS2B01G270300 chr2A 79.570 93 17 2 2430 2520 17123648 17123556 7.110000e-07 65.8
9 TraesCS2B01G270300 chr2D 98.579 1478 21 0 822 2299 292290434 292288957 0.000000e+00 2614.0
10 TraesCS2B01G270300 chr2D 91.537 579 43 6 2330 2903 292288856 292288279 0.000000e+00 793.0
11 TraesCS2B01G270300 chr2D 85.895 475 55 10 1 468 651016752 651017221 2.130000e-136 496.0
12 TraesCS2B01G270300 chr2D 89.427 227 8 1 603 829 292291580 292291370 3.900000e-69 272.0
13 TraesCS2B01G270300 chr2D 93.939 165 10 0 2909 3073 292287464 292287300 1.830000e-62 250.0
14 TraesCS2B01G270300 chr2D 93.333 165 11 0 2909 3073 282692216 282692052 8.510000e-61 244.0
15 TraesCS2B01G270300 chr2D 91.765 170 14 0 2904 3073 468702048 468701879 1.420000e-58 237.0
16 TraesCS2B01G270300 chr2D 95.714 140 6 0 469 608 292294033 292293894 3.080000e-55 226.0
17 TraesCS2B01G270300 chr2D 90.000 170 17 0 2904 3073 304433635 304433804 1.430000e-53 220.0
18 TraesCS2B01G270300 chr2D 96.703 91 3 0 2813 2903 282693188 282693098 5.310000e-33 152.0
19 TraesCS2B01G270300 chr2D 79.310 145 27 3 2674 2816 565153448 565153591 7.010000e-17 99.0
20 TraesCS2B01G270300 chr2D 84.524 84 11 2 2430 2511 426427171 426427254 7.060000e-12 82.4
21 TraesCS2B01G270300 chr2D 75.269 186 36 5 2332 2510 8485629 8485447 2.540000e-11 80.5
22 TraesCS2B01G270300 chr4B 90.851 470 38 3 1 469 68963003 68962538 2.600000e-175 625.0
23 TraesCS2B01G270300 chr4B 89.796 441 40 4 1 439 416172917 416172480 7.440000e-156 560.0
24 TraesCS2B01G270300 chr4B 80.537 149 24 5 2672 2817 18429576 18429430 3.240000e-20 110.0
25 TraesCS2B01G270300 chr5D 89.518 477 38 4 1 468 553390477 553390004 7.340000e-166 593.0
26 TraesCS2B01G270300 chr5D 85.474 475 59 9 1 470 440659202 440658733 1.280000e-133 486.0
27 TraesCS2B01G270300 chr5D 79.794 485 76 18 4 475 538186266 538185791 1.770000e-87 333.0
28 TraesCS2B01G270300 chr5D 81.188 101 19 0 2332 2432 452682393 452682293 7.060000e-12 82.4
29 TraesCS2B01G270300 chr1B 86.200 471 58 7 1 468 11947093 11947559 1.270000e-138 503.0
30 TraesCS2B01G270300 chr7D 83.333 474 59 10 1 468 166227855 166227396 1.320000e-113 420.0
31 TraesCS2B01G270300 chr7D 91.071 168 14 1 2904 3071 194407611 194407445 3.080000e-55 226.0
32 TraesCS2B01G270300 chr7D 90.588 170 16 0 2904 3073 301442390 301442559 3.080000e-55 226.0
33 TraesCS2B01G270300 chr7D 97.753 89 2 0 2815 2903 294499931 294499843 1.480000e-33 154.0
34 TraesCS2B01G270300 chr3A 91.765 170 14 0 2904 3073 265560754 265560585 1.420000e-58 237.0
35 TraesCS2B01G270300 chr3A 97.727 88 2 0 2816 2903 259754093 259754006 5.310000e-33 152.0
36 TraesCS2B01G270300 chr3A 84.034 119 16 3 2672 2788 691200546 691200663 9.010000e-21 111.0
37 TraesCS2B01G270300 chr4D 91.176 170 15 0 2904 3073 504173238 504173069 6.630000e-57 231.0
38 TraesCS2B01G270300 chr4D 80.233 86 14 3 2433 2516 16140914 16140998 9.200000e-06 62.1
39 TraesCS2B01G270300 chr3D 91.176 170 15 0 2904 3073 255741722 255741553 6.630000e-57 231.0
40 TraesCS2B01G270300 chr3B 97.727 88 2 0 2816 2903 72239759 72239672 5.310000e-33 152.0
41 TraesCS2B01G270300 chr3B 83.784 111 16 2 2672 2780 736943450 736943560 1.510000e-18 104.0
42 TraesCS2B01G270300 chrUn 97.701 87 2 0 2817 2903 115093088 115093174 1.910000e-32 150.0
43 TraesCS2B01G270300 chr1A 97.701 87 2 0 2817 2903 175055066 175054980 1.910000e-32 150.0
44 TraesCS2B01G270300 chr5B 82.836 134 16 7 2687 2816 391158705 391158835 2.500000e-21 113.0
45 TraesCS2B01G270300 chr5B 80.556 144 21 5 2657 2798 422938107 422938245 1.510000e-18 104.0
46 TraesCS2B01G270300 chr5B 87.500 72 9 0 2353 2424 553186284 553186213 1.960000e-12 84.2
47 TraesCS2B01G270300 chr4A 80.734 109 19 2 2332 2438 514421612 514421720 1.960000e-12 84.2
48 TraesCS2B01G270300 chr6B 80.220 91 15 3 2430 2517 502790185 502790275 7.110000e-07 65.8
49 TraesCS2B01G270300 chr6B 96.774 31 1 0 2441 2471 77758845 77758815 6.000000e-03 52.8
50 TraesCS2B01G270300 chr6D 90.909 44 2 2 2430 2471 284503853 284503896 1.190000e-04 58.4
51 TraesCS2B01G270300 chr1D 100.000 30 0 0 2441 2470 479511892 479511863 4.280000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G270300 chr2B 368613781 368616853 3072 True 5675 5675 100.0000 1 3073 1 chr2B.!!$R1 3072
1 TraesCS2B01G270300 chr2A 365283747 365286254 2507 True 1887 2987 93.6785 473 2903 2 chr2A.!!$R3 2430
2 TraesCS2B01G270300 chr2D 292287300 292294033 6733 True 831 2614 93.8392 469 3073 5 chr2D.!!$R4 2604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 0.043334 TTTGAGAGGGGGAGAGAGGG 59.957 60.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 5379 0.522705 CGCATGCACACAAGATGAGC 60.523 55.0 19.57 0.0 44.48 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.232118 ACATTACTTGGATCAAAAGAAAGGG 57.768 36.000 12.85 3.30 0.00 3.95
28 29 7.010160 ACATTACTTGGATCAAAAGAAAGGGA 58.990 34.615 12.85 0.00 0.00 4.20
29 30 7.675619 ACATTACTTGGATCAAAAGAAAGGGAT 59.324 33.333 12.85 0.00 0.00 3.85
30 31 7.703058 TTACTTGGATCAAAAGAAAGGGATC 57.297 36.000 12.85 0.00 36.33 3.36
31 32 4.702131 ACTTGGATCAAAAGAAAGGGATCG 59.298 41.667 12.85 0.00 37.59 3.69
32 33 3.620488 TGGATCAAAAGAAAGGGATCGG 58.380 45.455 0.00 0.00 37.59 4.18
33 34 3.265737 TGGATCAAAAGAAAGGGATCGGA 59.734 43.478 0.00 0.00 37.59 4.55
34 35 3.879892 GGATCAAAAGAAAGGGATCGGAG 59.120 47.826 0.00 0.00 37.59 4.63
35 36 4.384208 GGATCAAAAGAAAGGGATCGGAGA 60.384 45.833 0.00 0.00 45.75 3.71
36 37 4.634012 TCAAAAGAAAGGGATCGGAGAA 57.366 40.909 0.00 0.00 43.58 2.87
37 38 4.579869 TCAAAAGAAAGGGATCGGAGAAG 58.420 43.478 0.00 0.00 43.58 2.85
38 39 4.286032 TCAAAAGAAAGGGATCGGAGAAGA 59.714 41.667 0.00 0.00 43.58 2.87
39 40 5.045578 TCAAAAGAAAGGGATCGGAGAAGAT 60.046 40.000 0.00 0.00 43.58 2.40
40 41 5.443230 AAAGAAAGGGATCGGAGAAGATT 57.557 39.130 0.00 0.00 43.58 2.40
41 42 6.561519 AAAGAAAGGGATCGGAGAAGATTA 57.438 37.500 0.00 0.00 43.58 1.75
42 43 5.538849 AGAAAGGGATCGGAGAAGATTAC 57.461 43.478 0.00 0.00 43.58 1.89
43 44 4.345547 AGAAAGGGATCGGAGAAGATTACC 59.654 45.833 0.00 0.00 43.58 2.85
44 45 3.621682 AGGGATCGGAGAAGATTACCT 57.378 47.619 0.00 0.00 43.58 3.08
45 46 3.930035 AGGGATCGGAGAAGATTACCTT 58.070 45.455 0.00 0.00 43.58 3.50
54 55 1.927895 AAGATTACCTTCAGCGAGCG 58.072 50.000 0.00 0.00 0.00 5.03
55 56 1.103803 AGATTACCTTCAGCGAGCGA 58.896 50.000 0.00 0.00 0.00 4.93
56 57 1.476891 AGATTACCTTCAGCGAGCGAA 59.523 47.619 0.00 0.00 0.00 4.70
57 58 1.855360 GATTACCTTCAGCGAGCGAAG 59.145 52.381 16.69 16.69 39.69 3.79
60 61 4.085302 CTTCAGCGAGCGAAGGAG 57.915 61.111 16.18 1.96 36.94 3.69
61 62 1.214062 CTTCAGCGAGCGAAGGAGT 59.786 57.895 16.18 0.00 36.94 3.85
62 63 0.389166 CTTCAGCGAGCGAAGGAGTT 60.389 55.000 16.18 0.00 36.94 3.01
63 64 0.388649 TTCAGCGAGCGAAGGAGTTC 60.389 55.000 0.00 0.00 0.00 3.01
74 75 2.955614 GAAGGAGTTCGAAATCCACGA 58.044 47.619 37.52 0.00 45.23 4.35
75 76 3.323243 GAAGGAGTTCGAAATCCACGAA 58.677 45.455 37.52 0.00 45.23 3.85
83 84 5.682943 TTCGAAATCCACGAACAAAATCT 57.317 34.783 0.00 0.00 43.19 2.40
84 85 5.682943 TCGAAATCCACGAACAAAATCTT 57.317 34.783 0.00 0.00 36.84 2.40
85 86 5.685841 TCGAAATCCACGAACAAAATCTTC 58.314 37.500 0.00 0.00 36.84 2.87
86 87 5.237561 TCGAAATCCACGAACAAAATCTTCA 59.762 36.000 0.00 0.00 36.84 3.02
87 88 5.565259 CGAAATCCACGAACAAAATCTTCAG 59.435 40.000 0.00 0.00 0.00 3.02
88 89 6.565811 CGAAATCCACGAACAAAATCTTCAGA 60.566 38.462 0.00 0.00 0.00 3.27
89 90 6.824305 AATCCACGAACAAAATCTTCAGAT 57.176 33.333 0.00 0.00 36.07 2.90
90 91 6.824305 ATCCACGAACAAAATCTTCAGATT 57.176 33.333 0.00 0.00 45.91 2.40
102 103 6.840780 AATCTTCAGATTTGTAGGGTTTGG 57.159 37.500 0.00 0.00 41.64 3.28
103 104 5.576563 TCTTCAGATTTGTAGGGTTTGGA 57.423 39.130 0.00 0.00 0.00 3.53
104 105 5.947663 TCTTCAGATTTGTAGGGTTTGGAA 58.052 37.500 0.00 0.00 0.00 3.53
105 106 6.369629 TCTTCAGATTTGTAGGGTTTGGAAA 58.630 36.000 0.00 0.00 0.00 3.13
106 107 6.490040 TCTTCAGATTTGTAGGGTTTGGAAAG 59.510 38.462 0.00 0.00 0.00 2.62
107 108 5.076873 TCAGATTTGTAGGGTTTGGAAAGG 58.923 41.667 0.00 0.00 0.00 3.11
108 109 5.076873 CAGATTTGTAGGGTTTGGAAAGGA 58.923 41.667 0.00 0.00 0.00 3.36
109 110 5.716703 CAGATTTGTAGGGTTTGGAAAGGAT 59.283 40.000 0.00 0.00 0.00 3.24
110 111 6.211384 CAGATTTGTAGGGTTTGGAAAGGATT 59.789 38.462 0.00 0.00 0.00 3.01
111 112 6.787458 AGATTTGTAGGGTTTGGAAAGGATTT 59.213 34.615 0.00 0.00 43.98 2.17
112 113 5.799827 TTGTAGGGTTTGGAAAGGATTTG 57.200 39.130 0.00 0.00 39.27 2.32
113 114 5.068215 TGTAGGGTTTGGAAAGGATTTGA 57.932 39.130 0.00 0.00 39.27 2.69
114 115 5.076873 TGTAGGGTTTGGAAAGGATTTGAG 58.923 41.667 0.00 0.00 39.27 3.02
115 116 4.469469 AGGGTTTGGAAAGGATTTGAGA 57.531 40.909 0.00 0.00 39.27 3.27
116 117 4.411013 AGGGTTTGGAAAGGATTTGAGAG 58.589 43.478 0.00 0.00 39.27 3.20
117 118 3.511540 GGGTTTGGAAAGGATTTGAGAGG 59.488 47.826 0.00 0.00 39.27 3.69
118 119 3.511540 GGTTTGGAAAGGATTTGAGAGGG 59.488 47.826 0.00 0.00 39.27 4.30
119 120 3.456380 TTGGAAAGGATTTGAGAGGGG 57.544 47.619 0.00 0.00 39.27 4.79
120 121 1.640670 TGGAAAGGATTTGAGAGGGGG 59.359 52.381 0.00 0.00 39.27 5.40
121 122 1.923148 GGAAAGGATTTGAGAGGGGGA 59.077 52.381 0.00 0.00 39.27 4.81
122 123 2.092158 GGAAAGGATTTGAGAGGGGGAG 60.092 54.545 0.00 0.00 39.27 4.30
123 124 2.668850 AAGGATTTGAGAGGGGGAGA 57.331 50.000 0.00 0.00 0.00 3.71
124 125 2.188818 AGGATTTGAGAGGGGGAGAG 57.811 55.000 0.00 0.00 0.00 3.20
125 126 1.653918 AGGATTTGAGAGGGGGAGAGA 59.346 52.381 0.00 0.00 0.00 3.10
126 127 2.046292 GGATTTGAGAGGGGGAGAGAG 58.954 57.143 0.00 0.00 0.00 3.20
127 128 2.046292 GATTTGAGAGGGGGAGAGAGG 58.954 57.143 0.00 0.00 0.00 3.69
128 129 0.043334 TTTGAGAGGGGGAGAGAGGG 59.957 60.000 0.00 0.00 0.00 4.30
129 130 1.891296 TTGAGAGGGGGAGAGAGGGG 61.891 65.000 0.00 0.00 0.00 4.79
130 131 3.039526 AGAGGGGGAGAGAGGGGG 61.040 72.222 0.00 0.00 0.00 5.40
131 132 4.890306 GAGGGGGAGAGAGGGGGC 62.890 77.778 0.00 0.00 0.00 5.80
134 135 4.095400 GGGGAGAGAGGGGGCAGA 62.095 72.222 0.00 0.00 0.00 4.26
135 136 2.288643 GGGAGAGAGGGGGCAGAT 59.711 66.667 0.00 0.00 0.00 2.90
136 137 1.841103 GGGAGAGAGGGGGCAGATC 60.841 68.421 0.00 0.00 0.00 2.75
137 138 1.235696 GGAGAGAGGGGGCAGATCT 59.764 63.158 0.00 0.00 0.00 2.75
138 139 0.831711 GGAGAGAGGGGGCAGATCTC 60.832 65.000 0.00 4.46 39.83 2.75
139 140 1.152567 AGAGAGGGGGCAGATCTCG 60.153 63.158 0.00 0.00 43.41 4.04
140 141 2.123077 AGAGGGGGCAGATCTCGG 60.123 66.667 0.00 0.00 33.16 4.63
141 142 3.237741 GAGGGGGCAGATCTCGGG 61.238 72.222 0.00 0.00 0.00 5.14
142 143 4.095400 AGGGGGCAGATCTCGGGT 62.095 66.667 0.00 0.00 0.00 5.28
143 144 3.866582 GGGGGCAGATCTCGGGTG 61.867 72.222 0.00 0.00 0.00 4.61
144 145 2.764128 GGGGCAGATCTCGGGTGA 60.764 66.667 0.00 0.00 0.00 4.02
145 146 2.801631 GGGGCAGATCTCGGGTGAG 61.802 68.421 0.00 0.00 43.99 3.51
146 147 2.107953 GGCAGATCTCGGGTGAGC 59.892 66.667 0.00 0.00 42.26 4.26
147 148 2.430610 GGCAGATCTCGGGTGAGCT 61.431 63.158 0.00 0.00 42.26 4.09
149 150 2.197250 CAGATCTCGGGTGAGCTGT 58.803 57.895 0.00 0.00 43.18 4.40
150 151 0.179116 CAGATCTCGGGTGAGCTGTG 60.179 60.000 0.00 0.00 43.18 3.66
151 152 0.613292 AGATCTCGGGTGAGCTGTGT 60.613 55.000 0.00 0.00 42.26 3.72
152 153 0.459237 GATCTCGGGTGAGCTGTGTG 60.459 60.000 0.00 0.00 42.26 3.82
153 154 1.188219 ATCTCGGGTGAGCTGTGTGT 61.188 55.000 0.00 0.00 42.26 3.72
154 155 1.665916 CTCGGGTGAGCTGTGTGTG 60.666 63.158 0.00 0.00 34.96 3.82
155 156 2.666190 CGGGTGAGCTGTGTGTGG 60.666 66.667 0.00 0.00 0.00 4.17
156 157 2.281761 GGGTGAGCTGTGTGTGGG 60.282 66.667 0.00 0.00 0.00 4.61
157 158 2.281761 GGTGAGCTGTGTGTGGGG 60.282 66.667 0.00 0.00 0.00 4.96
158 159 2.510906 GTGAGCTGTGTGTGGGGT 59.489 61.111 0.00 0.00 0.00 4.95
159 160 1.893808 GTGAGCTGTGTGTGGGGTG 60.894 63.158 0.00 0.00 0.00 4.61
160 161 2.281761 GAGCTGTGTGTGGGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
161 162 3.850098 GAGCTGTGTGTGGGGTGGG 62.850 68.421 0.00 0.00 0.00 4.61
162 163 4.974721 GCTGTGTGTGGGGTGGGG 62.975 72.222 0.00 0.00 0.00 4.96
163 164 4.284550 CTGTGTGTGGGGTGGGGG 62.285 72.222 0.00 0.00 0.00 5.40
165 166 4.596585 GTGTGTGGGGTGGGGGTG 62.597 72.222 0.00 0.00 0.00 4.61
167 168 4.596585 GTGTGGGGTGGGGGTGTG 62.597 72.222 0.00 0.00 0.00 3.82
169 170 4.596585 GTGGGGTGGGGGTGTGTG 62.597 72.222 0.00 0.00 0.00 3.82
171 172 4.596585 GGGGTGGGGGTGTGTGTG 62.597 72.222 0.00 0.00 0.00 3.82
172 173 4.596585 GGGTGGGGGTGTGTGTGG 62.597 72.222 0.00 0.00 0.00 4.17
173 174 4.596585 GGTGGGGGTGTGTGTGGG 62.597 72.222 0.00 0.00 0.00 4.61
174 175 4.596585 GTGGGGGTGTGTGTGGGG 62.597 72.222 0.00 0.00 0.00 4.96
204 205 2.123295 GGGGGCCTGGGCAATTAG 60.123 66.667 22.68 0.00 44.11 1.73
205 206 2.689813 GGGGCCTGGGCAATTAGT 59.310 61.111 22.68 0.00 44.11 2.24
206 207 1.651214 GGGGGCCTGGGCAATTAGTA 61.651 60.000 22.68 0.00 44.11 1.82
207 208 0.260523 GGGGCCTGGGCAATTAGTAA 59.739 55.000 22.68 0.00 44.11 2.24
208 209 1.399714 GGGCCTGGGCAATTAGTAAC 58.600 55.000 22.68 0.00 44.11 2.50
209 210 1.341581 GGGCCTGGGCAATTAGTAACA 60.342 52.381 22.68 0.00 44.11 2.41
210 211 2.024414 GGCCTGGGCAATTAGTAACAG 58.976 52.381 16.34 0.00 44.11 3.16
211 212 2.356741 GGCCTGGGCAATTAGTAACAGA 60.357 50.000 16.34 0.00 44.11 3.41
212 213 2.683362 GCCTGGGCAATTAGTAACAGAC 59.317 50.000 6.75 0.00 41.49 3.51
213 214 3.872240 GCCTGGGCAATTAGTAACAGACA 60.872 47.826 6.75 0.00 41.49 3.41
214 215 3.941483 CCTGGGCAATTAGTAACAGACAG 59.059 47.826 0.00 0.00 0.00 3.51
215 216 4.565652 CCTGGGCAATTAGTAACAGACAGT 60.566 45.833 0.00 0.00 0.00 3.55
216 217 4.323417 TGGGCAATTAGTAACAGACAGTG 58.677 43.478 0.00 0.00 0.00 3.66
217 218 3.127030 GGGCAATTAGTAACAGACAGTGC 59.873 47.826 0.00 0.00 0.00 4.40
218 219 3.751175 GGCAATTAGTAACAGACAGTGCA 59.249 43.478 0.00 0.00 0.00 4.57
219 220 4.142816 GGCAATTAGTAACAGACAGTGCAG 60.143 45.833 0.00 0.00 0.00 4.41
220 221 4.670221 GCAATTAGTAACAGACAGTGCAGC 60.670 45.833 0.00 0.00 0.00 5.25
221 222 2.347697 TAGTAACAGACAGTGCAGCG 57.652 50.000 0.00 0.00 0.00 5.18
222 223 0.946221 AGTAACAGACAGTGCAGCGC 60.946 55.000 0.00 0.00 0.00 5.92
223 224 1.667830 TAACAGACAGTGCAGCGCC 60.668 57.895 2.29 0.00 0.00 6.53
224 225 2.099652 TAACAGACAGTGCAGCGCCT 62.100 55.000 2.29 0.00 0.00 5.52
225 226 2.099652 AACAGACAGTGCAGCGCCTA 62.100 55.000 2.29 0.00 0.00 3.93
226 227 1.374631 CAGACAGTGCAGCGCCTAA 60.375 57.895 2.29 0.00 0.00 2.69
227 228 1.079543 AGACAGTGCAGCGCCTAAG 60.080 57.895 2.29 0.00 0.00 2.18
228 229 2.046892 ACAGTGCAGCGCCTAAGG 60.047 61.111 2.29 0.00 0.00 2.69
229 230 2.821366 CAGTGCAGCGCCTAAGGG 60.821 66.667 2.29 0.00 0.00 3.95
239 240 2.423446 CCTAAGGGCTAGCCGCTG 59.577 66.667 27.24 16.11 36.75 5.18
240 241 2.280457 CTAAGGGCTAGCCGCTGC 60.280 66.667 27.24 13.52 36.75 5.25
241 242 3.080765 TAAGGGCTAGCCGCTGCA 61.081 61.111 27.24 13.56 41.13 4.41
242 243 3.385749 TAAGGGCTAGCCGCTGCAC 62.386 63.158 27.24 12.37 41.13 4.57
244 245 4.864334 GGGCTAGCCGCTGCACAT 62.864 66.667 27.24 0.00 41.13 3.21
245 246 2.825836 GGCTAGCCGCTGCACATT 60.826 61.111 20.16 0.00 41.13 2.71
246 247 1.523711 GGCTAGCCGCTGCACATTA 60.524 57.895 20.16 0.00 41.13 1.90
247 248 1.643832 GCTAGCCGCTGCACATTAC 59.356 57.895 2.29 0.00 41.13 1.89
248 249 1.089481 GCTAGCCGCTGCACATTACA 61.089 55.000 2.29 0.00 41.13 2.41
249 250 1.368641 CTAGCCGCTGCACATTACAA 58.631 50.000 2.16 0.00 41.13 2.41
250 251 1.062587 CTAGCCGCTGCACATTACAAC 59.937 52.381 2.16 0.00 41.13 3.32
251 252 0.606401 AGCCGCTGCACATTACAACT 60.606 50.000 2.05 0.00 41.13 3.16
252 253 0.454957 GCCGCTGCACATTACAACTG 60.455 55.000 0.00 0.00 37.47 3.16
253 254 0.874390 CCGCTGCACATTACAACTGT 59.126 50.000 0.00 0.00 0.00 3.55
254 255 1.400113 CCGCTGCACATTACAACTGTG 60.400 52.381 0.00 0.00 45.39 3.66
255 256 1.400113 CGCTGCACATTACAACTGTGG 60.400 52.381 0.00 0.00 43.34 4.17
256 257 1.666888 GCTGCACATTACAACTGTGGC 60.667 52.381 5.67 0.00 43.34 5.01
257 258 0.590682 TGCACATTACAACTGTGGCG 59.409 50.000 5.67 0.00 43.34 5.69
258 259 0.729140 GCACATTACAACTGTGGCGC 60.729 55.000 0.00 0.00 43.34 6.53
259 260 0.109781 CACATTACAACTGTGGCGCC 60.110 55.000 22.73 22.73 40.23 6.53
260 261 0.250727 ACATTACAACTGTGGCGCCT 60.251 50.000 29.70 7.80 0.00 5.52
261 262 1.002659 ACATTACAACTGTGGCGCCTA 59.997 47.619 29.70 15.92 0.00 3.93
262 263 1.665679 CATTACAACTGTGGCGCCTAG 59.334 52.381 29.70 26.22 0.00 3.02
272 273 2.105930 GCGCCTAGCTCAGAGGTG 59.894 66.667 12.66 9.81 45.72 4.00
273 274 2.105930 CGCCTAGCTCAGAGGTGC 59.894 66.667 12.66 7.10 37.75 5.01
274 275 2.422231 CGCCTAGCTCAGAGGTGCT 61.422 63.158 12.66 0.00 45.21 4.40
275 276 1.143620 GCCTAGCTCAGAGGTGCTG 59.856 63.158 12.66 1.84 43.26 4.41
276 277 1.143620 CCTAGCTCAGAGGTGCTGC 59.856 63.158 12.66 0.00 43.26 5.25
277 278 1.611474 CCTAGCTCAGAGGTGCTGCA 61.611 60.000 12.66 0.00 43.26 4.41
278 279 0.459934 CTAGCTCAGAGGTGCTGCAC 60.460 60.000 24.02 24.02 43.26 4.57
279 280 0.902048 TAGCTCAGAGGTGCTGCACT 60.902 55.000 29.54 17.00 43.26 4.40
280 281 2.033755 GCTCAGAGGTGCTGCACTG 61.034 63.158 29.54 20.76 44.52 3.66
281 282 2.031616 TCAGAGGTGCTGCACTGC 59.968 61.111 29.54 21.34 44.52 4.40
282 283 2.032223 CAGAGGTGCTGCACTGCT 59.968 61.111 29.54 23.00 37.90 4.24
283 284 1.600076 CAGAGGTGCTGCACTGCTT 60.600 57.895 29.54 14.51 37.90 3.91
284 285 1.150081 AGAGGTGCTGCACTGCTTT 59.850 52.632 29.54 13.43 34.40 3.51
285 286 1.170919 AGAGGTGCTGCACTGCTTTG 61.171 55.000 29.54 0.00 34.40 2.77
286 287 2.138656 GAGGTGCTGCACTGCTTTGG 62.139 60.000 29.54 0.00 34.40 3.28
287 288 2.492773 GGTGCTGCACTGCTTTGGT 61.493 57.895 29.54 0.00 34.40 3.67
288 289 1.299620 GTGCTGCACTGCTTTGGTG 60.300 57.895 24.68 0.00 37.70 4.17
293 294 4.347453 CACTGCTTTGGTGCGGGC 62.347 66.667 0.00 0.00 43.17 6.13
317 318 3.941188 CTGCCACGGTGGACAGGT 61.941 66.667 30.65 0.00 40.96 4.00
318 319 4.248842 TGCCACGGTGGACAGGTG 62.249 66.667 30.65 2.56 40.96 4.00
319 320 4.250305 GCCACGGTGGACAGGTGT 62.250 66.667 30.65 0.00 40.96 4.16
320 321 2.280797 CCACGGTGGACAGGTGTG 60.281 66.667 22.77 0.00 40.96 3.82
321 322 2.972505 CACGGTGGACAGGTGTGC 60.973 66.667 0.00 0.00 36.87 4.57
322 323 3.475494 ACGGTGGACAGGTGTGCA 61.475 61.111 0.00 0.00 44.12 4.57
333 334 3.357079 GTGTGCAACGCCCCAGAG 61.357 66.667 0.00 0.00 42.76 3.35
334 335 4.641645 TGTGCAACGCCCCAGAGG 62.642 66.667 0.00 0.00 42.39 3.69
335 336 4.643387 GTGCAACGCCCCAGAGGT 62.643 66.667 0.00 0.00 38.26 3.85
394 395 2.596263 GCTACACGAAAAGGTCAAGC 57.404 50.000 0.00 0.00 0.00 4.01
395 396 1.136336 GCTACACGAAAAGGTCAAGCG 60.136 52.381 0.00 0.00 0.00 4.68
396 397 0.863144 TACACGAAAAGGTCAAGCGC 59.137 50.000 0.00 0.00 0.00 5.92
397 398 1.438710 CACGAAAAGGTCAAGCGCG 60.439 57.895 0.00 0.00 0.00 6.86
398 399 1.885850 ACGAAAAGGTCAAGCGCGT 60.886 52.632 8.43 0.00 0.00 6.01
399 400 1.438710 CGAAAAGGTCAAGCGCGTG 60.439 57.895 17.71 17.71 0.00 5.34
400 401 1.827315 CGAAAAGGTCAAGCGCGTGA 61.827 55.000 22.28 22.28 0.00 4.35
401 402 0.306533 GAAAAGGTCAAGCGCGTGAA 59.693 50.000 27.28 9.35 0.00 3.18
402 403 0.736053 AAAAGGTCAAGCGCGTGAAA 59.264 45.000 27.28 3.88 0.00 2.69
403 404 0.951558 AAAGGTCAAGCGCGTGAAAT 59.048 45.000 27.28 15.81 0.00 2.17
404 405 1.803334 AAGGTCAAGCGCGTGAAATA 58.197 45.000 27.28 2.65 0.00 1.40
405 406 1.359848 AGGTCAAGCGCGTGAAATAG 58.640 50.000 27.28 0.00 0.00 1.73
406 407 1.076332 GGTCAAGCGCGTGAAATAGT 58.924 50.000 27.28 0.00 0.00 2.12
407 408 1.463444 GGTCAAGCGCGTGAAATAGTT 59.537 47.619 27.28 0.00 0.00 2.24
408 409 2.095919 GGTCAAGCGCGTGAAATAGTTT 60.096 45.455 27.28 0.00 0.00 2.66
409 410 3.551551 GTCAAGCGCGTGAAATAGTTTT 58.448 40.909 27.28 0.00 0.00 2.43
410 411 4.377635 GGTCAAGCGCGTGAAATAGTTTTA 60.378 41.667 27.28 0.00 0.00 1.52
411 412 4.548457 GTCAAGCGCGTGAAATAGTTTTAC 59.452 41.667 27.28 8.07 0.00 2.01
417 418 3.907966 CGTGAAATAGTTTTACGCTCGG 58.092 45.455 6.77 0.00 43.78 4.63
418 419 3.365820 CGTGAAATAGTTTTACGCTCGGT 59.634 43.478 6.77 0.00 43.78 4.69
419 420 4.143263 CGTGAAATAGTTTTACGCTCGGTT 60.143 41.667 6.77 0.00 43.78 4.44
420 421 5.311271 GTGAAATAGTTTTACGCTCGGTTC 58.689 41.667 0.00 0.00 0.00 3.62
421 422 4.989797 TGAAATAGTTTTACGCTCGGTTCA 59.010 37.500 0.00 0.00 0.00 3.18
422 423 5.640357 TGAAATAGTTTTACGCTCGGTTCAT 59.360 36.000 0.00 0.00 0.00 2.57
423 424 6.148150 TGAAATAGTTTTACGCTCGGTTCATT 59.852 34.615 0.00 0.00 0.00 2.57
424 425 6.490566 AATAGTTTTACGCTCGGTTCATTT 57.509 33.333 0.00 0.00 0.00 2.32
425 426 4.400036 AGTTTTACGCTCGGTTCATTTC 57.600 40.909 0.00 0.00 0.00 2.17
426 427 3.120786 AGTTTTACGCTCGGTTCATTTCG 60.121 43.478 0.00 0.00 0.00 3.46
427 428 2.068837 TTACGCTCGGTTCATTTCGT 57.931 45.000 0.00 0.00 0.00 3.85
428 429 1.342555 TACGCTCGGTTCATTTCGTG 58.657 50.000 0.00 0.00 0.00 4.35
429 430 0.319211 ACGCTCGGTTCATTTCGTGA 60.319 50.000 0.00 0.00 34.25 4.35
430 431 0.787787 CGCTCGGTTCATTTCGTGAA 59.212 50.000 0.00 0.00 44.36 3.18
440 441 4.418013 TCATTTCGTGAATTCATTGCGT 57.582 36.364 12.12 0.00 32.78 5.24
441 442 4.402583 TCATTTCGTGAATTCATTGCGTC 58.597 39.130 12.12 0.00 32.78 5.19
442 443 2.892373 TTCGTGAATTCATTGCGTCC 57.108 45.000 12.12 0.00 0.00 4.79
443 444 1.802069 TCGTGAATTCATTGCGTCCA 58.198 45.000 12.12 0.00 0.00 4.02
444 445 1.463056 TCGTGAATTCATTGCGTCCAC 59.537 47.619 12.12 0.00 0.00 4.02
445 446 1.196581 CGTGAATTCATTGCGTCCACA 59.803 47.619 12.12 0.00 0.00 4.17
446 447 2.159531 CGTGAATTCATTGCGTCCACAT 60.160 45.455 12.12 0.00 0.00 3.21
447 448 3.173599 GTGAATTCATTGCGTCCACATG 58.826 45.455 12.12 0.00 0.00 3.21
448 449 2.819019 TGAATTCATTGCGTCCACATGT 59.181 40.909 3.38 0.00 0.00 3.21
449 450 3.119884 TGAATTCATTGCGTCCACATGTC 60.120 43.478 3.38 0.00 0.00 3.06
450 451 1.889545 TTCATTGCGTCCACATGTCA 58.110 45.000 0.00 0.00 0.00 3.58
451 452 1.889545 TCATTGCGTCCACATGTCAA 58.110 45.000 0.00 0.00 0.00 3.18
452 453 2.225467 TCATTGCGTCCACATGTCAAA 58.775 42.857 0.00 0.00 0.00 2.69
453 454 2.620585 TCATTGCGTCCACATGTCAAAA 59.379 40.909 0.00 0.00 0.00 2.44
454 455 3.255395 TCATTGCGTCCACATGTCAAAAT 59.745 39.130 0.00 0.00 0.00 1.82
455 456 3.724508 TTGCGTCCACATGTCAAAATT 57.275 38.095 0.00 0.00 0.00 1.82
456 457 3.010624 TGCGTCCACATGTCAAAATTG 57.989 42.857 0.00 0.00 0.00 2.32
457 458 2.360483 TGCGTCCACATGTCAAAATTGT 59.640 40.909 0.00 0.00 0.00 2.71
458 459 2.979813 GCGTCCACATGTCAAAATTGTC 59.020 45.455 0.00 0.00 0.00 3.18
459 460 3.549827 GCGTCCACATGTCAAAATTGTCA 60.550 43.478 0.00 0.00 0.00 3.58
460 461 4.605968 CGTCCACATGTCAAAATTGTCAA 58.394 39.130 0.00 0.00 30.60 3.18
461 462 5.221880 CGTCCACATGTCAAAATTGTCAAT 58.778 37.500 0.00 0.00 30.60 2.57
462 463 5.691305 CGTCCACATGTCAAAATTGTCAATT 59.309 36.000 4.91 4.91 30.60 2.32
463 464 6.200665 CGTCCACATGTCAAAATTGTCAATTT 59.799 34.615 16.26 16.26 42.62 1.82
475 476 1.000827 TGTCAATTTTGCCGATTGCGT 60.001 42.857 0.00 0.00 45.60 5.24
490 491 1.376037 GCGTCACTAAAGCCAGGCT 60.376 57.895 8.70 8.70 42.56 4.58
502 503 1.071987 CCAGGCTGTTCAGAGCACA 59.928 57.895 14.43 0.00 41.08 4.57
586 587 1.102809 GGCGGATGTGCATTCATGGA 61.103 55.000 0.00 0.00 36.28 3.41
730 3073 2.159099 GCTGACAATGATGAGTACGGGA 60.159 50.000 0.00 0.00 0.00 5.14
733 3076 3.450817 TGACAATGATGAGTACGGGATGT 59.549 43.478 0.00 0.00 0.00 3.06
982 4268 2.049985 GATCGATCCTCCCGCGTG 60.050 66.667 14.76 0.00 0.00 5.34
1241 4527 2.617308 TCTCCGTAAGCTGACTAATCCG 59.383 50.000 0.00 0.00 0.00 4.18
1256 4542 0.249322 ATCCGTTCTATTGCCGTCCG 60.249 55.000 0.00 0.00 0.00 4.79
1655 4941 1.609555 GAGAAGGACGGCATCGACTAT 59.390 52.381 0.00 0.00 40.11 2.12
1763 5049 3.256960 TTCAGCGGGCCCTTCCTT 61.257 61.111 22.43 0.00 34.39 3.36
1913 5199 2.915659 AACGCGTCCTCCTCCACA 60.916 61.111 14.44 0.00 0.00 4.17
2093 5379 2.931325 GAGCAGAGCAGAAGTGAAGATG 59.069 50.000 0.00 0.00 0.00 2.90
2128 5414 1.444895 GCGTACGTGGGTTGATCGT 60.445 57.895 17.90 0.00 40.78 3.73
2252 5541 3.496130 CCTCGCCAACTCATGATATTGAC 59.504 47.826 17.37 8.24 0.00 3.18
2255 5544 3.745480 CGCCAACTCATGATATTGACCCT 60.745 47.826 17.37 0.00 0.00 4.34
2276 5565 6.496565 ACCCTCCATGAATGTTCACAAAATTA 59.503 34.615 0.00 0.00 40.49 1.40
2300 5589 9.710979 TTATTTGTTGACACTTTCTTCGTTTAG 57.289 29.630 0.00 0.00 0.00 1.85
2301 5590 6.730960 TTGTTGACACTTTCTTCGTTTAGT 57.269 33.333 0.00 0.00 0.00 2.24
2302 5591 6.102006 TGTTGACACTTTCTTCGTTTAGTG 57.898 37.500 0.00 0.00 42.75 2.74
2303 5592 5.870433 TGTTGACACTTTCTTCGTTTAGTGA 59.130 36.000 7.97 0.00 40.24 3.41
2305 5594 6.525121 TGACACTTTCTTCGTTTAGTGATG 57.475 37.500 7.97 0.00 40.24 3.07
2307 5596 4.814234 ACACTTTCTTCGTTTAGTGATGCA 59.186 37.500 7.97 0.00 40.24 3.96
2308 5597 5.295787 ACACTTTCTTCGTTTAGTGATGCAA 59.704 36.000 7.97 0.00 40.24 4.08
2309 5598 5.848036 CACTTTCTTCGTTTAGTGATGCAAG 59.152 40.000 0.00 0.00 40.24 4.01
2311 5600 6.704493 ACTTTCTTCGTTTAGTGATGCAAGTA 59.296 34.615 0.00 0.00 29.80 2.24
2312 5601 7.387948 ACTTTCTTCGTTTAGTGATGCAAGTAT 59.612 33.333 0.00 0.00 29.80 2.12
2313 5602 6.647212 TCTTCGTTTAGTGATGCAAGTATG 57.353 37.500 0.00 0.00 0.00 2.39
2314 5603 6.394809 TCTTCGTTTAGTGATGCAAGTATGA 58.605 36.000 0.00 0.00 0.00 2.15
2315 5604 6.310467 TCTTCGTTTAGTGATGCAAGTATGAC 59.690 38.462 0.00 0.00 0.00 3.06
2316 5605 4.868171 TCGTTTAGTGATGCAAGTATGACC 59.132 41.667 0.00 0.00 0.00 4.02
2319 5608 6.314784 GTTTAGTGATGCAAGTATGACCAAC 58.685 40.000 0.00 0.00 0.00 3.77
2321 5610 4.655963 AGTGATGCAAGTATGACCAACTT 58.344 39.130 0.00 0.00 37.67 2.66
2323 5612 6.237901 AGTGATGCAAGTATGACCAACTTTA 58.762 36.000 0.00 0.00 34.99 1.85
2324 5613 6.714810 AGTGATGCAAGTATGACCAACTTTAA 59.285 34.615 0.00 0.00 34.99 1.52
2325 5614 7.394359 AGTGATGCAAGTATGACCAACTTTAAT 59.606 33.333 0.00 0.00 34.99 1.40
2327 5616 6.266168 TGCAAGTATGACCAACTTTAATGG 57.734 37.500 0.00 0.00 43.84 3.16
2346 5705 4.085357 TGGTCAAACACATAGCAACTCT 57.915 40.909 0.00 0.00 0.00 3.24
2351 5710 6.371548 GGTCAAACACATAGCAACTCTGAATA 59.628 38.462 0.00 0.00 0.00 1.75
2369 5729 9.520204 CTCTGAATATTTTCACGGCAAATTTAT 57.480 29.630 0.00 0.00 36.94 1.40
2376 5736 3.433709 TCACGGCAAATTTATTGATGCG 58.566 40.909 0.00 0.00 39.66 4.73
2384 5744 7.086376 GGCAAATTTATTGATGCGAGTATGAT 58.914 34.615 0.00 0.00 39.66 2.45
2420 5780 5.065859 TCAAGCATGACAACTTTCTTTTCGA 59.934 36.000 0.00 0.00 0.00 3.71
2433 5793 8.851960 ACTTTCTTTTCGAATGGTAAGTTTTC 57.148 30.769 0.00 0.00 32.61 2.29
2437 5799 9.863845 TTCTTTTCGAATGGTAAGTTTTCTTTT 57.136 25.926 0.00 0.00 40.91 2.27
2476 5839 2.331265 AAAAACGTCAGGCTGGAGC 58.669 52.632 15.73 4.68 41.14 4.70
2491 5854 2.906388 AGCGCATTGTGCCACACA 60.906 55.556 18.13 0.00 43.02 3.72
2493 5856 2.089936 GCGCATTGTGCCACACATG 61.090 57.895 11.14 6.35 44.16 3.21
2546 5909 9.779951 AGACTAGTAGAAATAAAGGTAAAGGGA 57.220 33.333 3.59 0.00 0.00 4.20
2685 6048 7.238486 AGATTTATGCCAAACCAACATGTAA 57.762 32.000 0.00 0.00 0.00 2.41
2775 6139 7.117667 GGTGTTCGCATTTTTCCAGATTTATTT 59.882 33.333 0.00 0.00 0.00 1.40
2786 6150 4.017591 TCCAGATTTATTTCAGGCCTTCCA 60.018 41.667 0.00 0.00 33.74 3.53
2903 6267 6.183360 CCAAGAACACAAAGAGGAATTCACTT 60.183 38.462 7.93 9.24 0.00 3.16
2904 6268 6.382869 AGAACACAAAGAGGAATTCACTTG 57.617 37.500 7.93 7.07 0.00 3.16
2905 6269 5.888161 AGAACACAAAGAGGAATTCACTTGT 59.112 36.000 7.93 7.66 35.62 3.16
2907 6271 5.440610 ACACAAAGAGGAATTCACTTGTCT 58.559 37.500 7.93 0.00 34.01 3.41
2913 7085 5.715070 AGAGGAATTCACTTGTCTCTTACG 58.285 41.667 7.93 0.00 0.00 3.18
2924 7096 6.914215 CACTTGTCTCTTACGTTGTACTTGTA 59.086 38.462 0.00 0.00 0.00 2.41
2948 7120 1.412710 TGGGATGTCGATCTTGTAGGC 59.587 52.381 0.00 0.00 0.00 3.93
2980 7152 0.670546 GCGTGCTAGCACCTTGAAGA 60.671 55.000 35.76 1.62 43.49 2.87
2989 7161 2.009042 GCACCTTGAAGAGTCCATCGG 61.009 57.143 0.00 0.00 0.00 4.18
3022 7194 2.770587 CTTGGACTTGCGCTCGTTGC 62.771 60.000 9.73 0.00 38.57 4.17
3054 7226 2.689553 TGCGAAGATGAAGCCATACA 57.310 45.000 0.00 0.00 32.09 2.29
3062 7234 6.497624 AAGATGAAGCCATACAAGATCTCT 57.502 37.500 0.00 0.00 32.09 3.10
3063 7235 6.497624 AGATGAAGCCATACAAGATCTCTT 57.502 37.500 0.00 0.00 32.59 2.85
3064 7236 6.289834 AGATGAAGCCATACAAGATCTCTTG 58.710 40.000 16.46 16.46 44.54 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.802267 CCCTTTCTTTTGATCCAAGTAATGTTA 58.198 33.333 0.00 0.00 0.00 2.41
2 3 7.508977 TCCCTTTCTTTTGATCCAAGTAATGTT 59.491 33.333 0.00 0.00 0.00 2.71
3 4 7.010160 TCCCTTTCTTTTGATCCAAGTAATGT 58.990 34.615 0.00 0.00 0.00 2.71
4 5 7.466746 TCCCTTTCTTTTGATCCAAGTAATG 57.533 36.000 0.00 0.00 0.00 1.90
5 6 7.067494 CGATCCCTTTCTTTTGATCCAAGTAAT 59.933 37.037 0.00 0.00 31.94 1.89
6 7 6.374333 CGATCCCTTTCTTTTGATCCAAGTAA 59.626 38.462 0.00 0.00 31.94 2.24
7 8 5.880332 CGATCCCTTTCTTTTGATCCAAGTA 59.120 40.000 0.00 0.00 31.94 2.24
8 9 4.702131 CGATCCCTTTCTTTTGATCCAAGT 59.298 41.667 0.00 0.00 31.94 3.16
9 10 4.096984 CCGATCCCTTTCTTTTGATCCAAG 59.903 45.833 0.00 0.00 31.94 3.61
10 11 4.016444 CCGATCCCTTTCTTTTGATCCAA 58.984 43.478 0.00 0.00 31.94 3.53
11 12 3.265737 TCCGATCCCTTTCTTTTGATCCA 59.734 43.478 0.00 0.00 31.94 3.41
12 13 3.879892 CTCCGATCCCTTTCTTTTGATCC 59.120 47.826 0.00 0.00 31.94 3.36
13 14 4.770795 TCTCCGATCCCTTTCTTTTGATC 58.229 43.478 0.00 0.00 0.00 2.92
14 15 4.844349 TCTCCGATCCCTTTCTTTTGAT 57.156 40.909 0.00 0.00 0.00 2.57
15 16 4.286032 TCTTCTCCGATCCCTTTCTTTTGA 59.714 41.667 0.00 0.00 0.00 2.69
16 17 4.579869 TCTTCTCCGATCCCTTTCTTTTG 58.420 43.478 0.00 0.00 0.00 2.44
17 18 4.910458 TCTTCTCCGATCCCTTTCTTTT 57.090 40.909 0.00 0.00 0.00 2.27
18 19 5.443230 AATCTTCTCCGATCCCTTTCTTT 57.557 39.130 0.00 0.00 0.00 2.52
19 20 5.163290 GGTAATCTTCTCCGATCCCTTTCTT 60.163 44.000 0.00 0.00 0.00 2.52
20 21 4.345547 GGTAATCTTCTCCGATCCCTTTCT 59.654 45.833 0.00 0.00 0.00 2.52
21 22 4.345547 AGGTAATCTTCTCCGATCCCTTTC 59.654 45.833 0.00 0.00 0.00 2.62
22 23 4.299485 AGGTAATCTTCTCCGATCCCTTT 58.701 43.478 0.00 0.00 0.00 3.11
23 24 3.930035 AGGTAATCTTCTCCGATCCCTT 58.070 45.455 0.00 0.00 0.00 3.95
24 25 3.621682 AGGTAATCTTCTCCGATCCCT 57.378 47.619 0.00 0.00 0.00 4.20
25 26 4.260139 GAAGGTAATCTTCTCCGATCCC 57.740 50.000 0.00 0.00 46.30 3.85
35 36 1.476891 TCGCTCGCTGAAGGTAATCTT 59.523 47.619 0.00 0.00 38.65 2.40
36 37 1.103803 TCGCTCGCTGAAGGTAATCT 58.896 50.000 0.00 0.00 0.00 2.40
37 38 1.855360 CTTCGCTCGCTGAAGGTAATC 59.145 52.381 12.44 0.00 39.30 1.75
38 39 1.927895 CTTCGCTCGCTGAAGGTAAT 58.072 50.000 12.44 0.00 39.30 1.89
39 40 3.418675 CTTCGCTCGCTGAAGGTAA 57.581 52.632 12.44 0.00 39.30 2.85
43 44 0.389166 AACTCCTTCGCTCGCTGAAG 60.389 55.000 12.98 12.98 41.95 3.02
44 45 0.388649 GAACTCCTTCGCTCGCTGAA 60.389 55.000 0.00 0.00 0.00 3.02
45 46 1.213013 GAACTCCTTCGCTCGCTGA 59.787 57.895 0.00 0.00 0.00 4.26
46 47 2.155194 CGAACTCCTTCGCTCGCTG 61.155 63.158 0.00 0.00 42.72 5.18
47 48 2.179517 CGAACTCCTTCGCTCGCT 59.820 61.111 0.00 0.00 42.72 4.93
54 55 2.955614 TCGTGGATTTCGAACTCCTTC 58.044 47.619 28.43 21.06 34.36 3.46
55 56 3.396260 TTCGTGGATTTCGAACTCCTT 57.604 42.857 28.43 0.44 41.33 3.36
61 62 5.682943 AGATTTTGTTCGTGGATTTCGAA 57.317 34.783 0.00 0.00 43.41 3.71
62 63 5.237561 TGAAGATTTTGTTCGTGGATTTCGA 59.762 36.000 0.00 0.00 35.50 3.71
63 64 5.448438 TGAAGATTTTGTTCGTGGATTTCG 58.552 37.500 0.00 0.00 0.00 3.46
64 65 6.668323 TCTGAAGATTTTGTTCGTGGATTTC 58.332 36.000 0.00 0.00 0.00 2.17
65 66 6.633500 TCTGAAGATTTTGTTCGTGGATTT 57.367 33.333 0.00 0.00 0.00 2.17
66 67 6.824305 ATCTGAAGATTTTGTTCGTGGATT 57.176 33.333 0.00 0.00 0.00 3.01
67 68 6.824305 AATCTGAAGATTTTGTTCGTGGAT 57.176 33.333 0.00 0.00 41.64 3.41
79 80 6.552008 TCCAAACCCTACAAATCTGAAGATT 58.448 36.000 0.00 0.00 45.91 2.40
80 81 6.139679 TCCAAACCCTACAAATCTGAAGAT 57.860 37.500 0.00 0.00 36.07 2.40
81 82 5.576563 TCCAAACCCTACAAATCTGAAGA 57.423 39.130 0.00 0.00 0.00 2.87
82 83 6.294731 CCTTTCCAAACCCTACAAATCTGAAG 60.295 42.308 0.00 0.00 0.00 3.02
83 84 5.538433 CCTTTCCAAACCCTACAAATCTGAA 59.462 40.000 0.00 0.00 0.00 3.02
84 85 5.076873 CCTTTCCAAACCCTACAAATCTGA 58.923 41.667 0.00 0.00 0.00 3.27
85 86 5.076873 TCCTTTCCAAACCCTACAAATCTG 58.923 41.667 0.00 0.00 0.00 2.90
86 87 5.333566 TCCTTTCCAAACCCTACAAATCT 57.666 39.130 0.00 0.00 0.00 2.40
87 88 6.605471 AATCCTTTCCAAACCCTACAAATC 57.395 37.500 0.00 0.00 0.00 2.17
88 89 6.556874 TCAAATCCTTTCCAAACCCTACAAAT 59.443 34.615 0.00 0.00 0.00 2.32
89 90 5.900123 TCAAATCCTTTCCAAACCCTACAAA 59.100 36.000 0.00 0.00 0.00 2.83
90 91 5.459505 TCAAATCCTTTCCAAACCCTACAA 58.540 37.500 0.00 0.00 0.00 2.41
91 92 5.068215 TCAAATCCTTTCCAAACCCTACA 57.932 39.130 0.00 0.00 0.00 2.74
92 93 5.321927 TCTCAAATCCTTTCCAAACCCTAC 58.678 41.667 0.00 0.00 0.00 3.18
93 94 5.516591 CCTCTCAAATCCTTTCCAAACCCTA 60.517 44.000 0.00 0.00 0.00 3.53
94 95 4.411013 CTCTCAAATCCTTTCCAAACCCT 58.589 43.478 0.00 0.00 0.00 4.34
95 96 3.511540 CCTCTCAAATCCTTTCCAAACCC 59.488 47.826 0.00 0.00 0.00 4.11
96 97 3.511540 CCCTCTCAAATCCTTTCCAAACC 59.488 47.826 0.00 0.00 0.00 3.27
97 98 3.511540 CCCCTCTCAAATCCTTTCCAAAC 59.488 47.826 0.00 0.00 0.00 2.93
98 99 3.502119 CCCCCTCTCAAATCCTTTCCAAA 60.502 47.826 0.00 0.00 0.00 3.28
99 100 2.042979 CCCCCTCTCAAATCCTTTCCAA 59.957 50.000 0.00 0.00 0.00 3.53
100 101 1.640670 CCCCCTCTCAAATCCTTTCCA 59.359 52.381 0.00 0.00 0.00 3.53
101 102 1.923148 TCCCCCTCTCAAATCCTTTCC 59.077 52.381 0.00 0.00 0.00 3.13
102 103 2.846827 TCTCCCCCTCTCAAATCCTTTC 59.153 50.000 0.00 0.00 0.00 2.62
103 104 2.849318 CTCTCCCCCTCTCAAATCCTTT 59.151 50.000 0.00 0.00 0.00 3.11
104 105 2.046447 TCTCTCCCCCTCTCAAATCCTT 59.954 50.000 0.00 0.00 0.00 3.36
105 106 1.653918 TCTCTCCCCCTCTCAAATCCT 59.346 52.381 0.00 0.00 0.00 3.24
106 107 2.046292 CTCTCTCCCCCTCTCAAATCC 58.954 57.143 0.00 0.00 0.00 3.01
107 108 2.046292 CCTCTCTCCCCCTCTCAAATC 58.954 57.143 0.00 0.00 0.00 2.17
108 109 1.344906 CCCTCTCTCCCCCTCTCAAAT 60.345 57.143 0.00 0.00 0.00 2.32
109 110 0.043334 CCCTCTCTCCCCCTCTCAAA 59.957 60.000 0.00 0.00 0.00 2.69
110 111 1.706575 CCCTCTCTCCCCCTCTCAA 59.293 63.158 0.00 0.00 0.00 3.02
111 112 2.328589 CCCCTCTCTCCCCCTCTCA 61.329 68.421 0.00 0.00 0.00 3.27
112 113 2.612251 CCCCTCTCTCCCCCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
113 114 3.039526 CCCCCTCTCTCCCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
114 115 4.890306 GCCCCCTCTCTCCCCCTC 62.890 77.778 0.00 0.00 0.00 4.30
117 118 3.418623 ATCTGCCCCCTCTCTCCCC 62.419 68.421 0.00 0.00 0.00 4.81
118 119 1.841103 GATCTGCCCCCTCTCTCCC 60.841 68.421 0.00 0.00 0.00 4.30
119 120 0.831711 GAGATCTGCCCCCTCTCTCC 60.832 65.000 0.00 0.00 34.03 3.71
120 121 1.178534 CGAGATCTGCCCCCTCTCTC 61.179 65.000 0.00 0.00 34.55 3.20
121 122 1.152567 CGAGATCTGCCCCCTCTCT 60.153 63.158 0.00 0.00 34.55 3.10
122 123 2.206536 CCGAGATCTGCCCCCTCTC 61.207 68.421 0.00 0.00 33.59 3.20
123 124 2.123077 CCGAGATCTGCCCCCTCT 60.123 66.667 0.00 0.00 0.00 3.69
124 125 3.237741 CCCGAGATCTGCCCCCTC 61.238 72.222 0.00 0.00 0.00 4.30
125 126 4.095400 ACCCGAGATCTGCCCCCT 62.095 66.667 0.00 0.00 0.00 4.79
126 127 3.866582 CACCCGAGATCTGCCCCC 61.867 72.222 0.00 0.00 0.00 5.40
127 128 2.764128 TCACCCGAGATCTGCCCC 60.764 66.667 0.00 0.00 0.00 5.80
128 129 2.818132 CTCACCCGAGATCTGCCC 59.182 66.667 0.00 0.00 42.34 5.36
129 130 2.107953 GCTCACCCGAGATCTGCC 59.892 66.667 0.00 0.00 42.34 4.85
130 131 1.227205 CAGCTCACCCGAGATCTGC 60.227 63.158 0.00 0.00 42.34 4.26
131 132 0.179116 CACAGCTCACCCGAGATCTG 60.179 60.000 0.00 0.00 42.34 2.90
132 133 0.613292 ACACAGCTCACCCGAGATCT 60.613 55.000 0.00 0.00 42.34 2.75
133 134 0.459237 CACACAGCTCACCCGAGATC 60.459 60.000 0.00 0.00 42.34 2.75
134 135 1.188219 ACACACAGCTCACCCGAGAT 61.188 55.000 0.00 0.00 42.34 2.75
135 136 1.832608 ACACACAGCTCACCCGAGA 60.833 57.895 0.00 0.00 42.34 4.04
136 137 1.665916 CACACACAGCTCACCCGAG 60.666 63.158 0.00 0.00 42.66 4.63
137 138 2.421314 CACACACAGCTCACCCGA 59.579 61.111 0.00 0.00 0.00 5.14
138 139 2.666190 CCACACACAGCTCACCCG 60.666 66.667 0.00 0.00 0.00 5.28
139 140 2.281761 CCCACACACAGCTCACCC 60.282 66.667 0.00 0.00 0.00 4.61
140 141 2.281761 CCCCACACACAGCTCACC 60.282 66.667 0.00 0.00 0.00 4.02
141 142 1.893808 CACCCCACACACAGCTCAC 60.894 63.158 0.00 0.00 0.00 3.51
142 143 2.510411 CACCCCACACACAGCTCA 59.490 61.111 0.00 0.00 0.00 4.26
143 144 2.281761 CCACCCCACACACAGCTC 60.282 66.667 0.00 0.00 0.00 4.09
144 145 3.889692 CCCACCCCACACACAGCT 61.890 66.667 0.00 0.00 0.00 4.24
145 146 4.974721 CCCCACCCCACACACAGC 62.975 72.222 0.00 0.00 0.00 4.40
146 147 4.284550 CCCCCACCCCACACACAG 62.285 72.222 0.00 0.00 0.00 3.66
148 149 4.596585 CACCCCCACCCCACACAC 62.597 72.222 0.00 0.00 0.00 3.82
150 151 4.596585 CACACCCCCACCCCACAC 62.597 72.222 0.00 0.00 0.00 3.82
152 153 4.596585 CACACACCCCCACCCCAC 62.597 72.222 0.00 0.00 0.00 4.61
154 155 4.596585 CACACACACCCCCACCCC 62.597 72.222 0.00 0.00 0.00 4.95
155 156 4.596585 CCACACACACCCCCACCC 62.597 72.222 0.00 0.00 0.00 4.61
156 157 4.596585 CCCACACACACCCCCACC 62.597 72.222 0.00 0.00 0.00 4.61
157 158 4.596585 CCCCACACACACCCCCAC 62.597 72.222 0.00 0.00 0.00 4.61
187 188 1.651214 TACTAATTGCCCAGGCCCCC 61.651 60.000 6.14 0.00 41.09 5.40
188 189 0.260523 TTACTAATTGCCCAGGCCCC 59.739 55.000 6.14 0.00 41.09 5.80
189 190 1.341581 TGTTACTAATTGCCCAGGCCC 60.342 52.381 6.14 0.00 41.09 5.80
190 191 2.024414 CTGTTACTAATTGCCCAGGCC 58.976 52.381 6.14 0.00 41.09 5.19
191 192 2.683362 GTCTGTTACTAATTGCCCAGGC 59.317 50.000 0.38 0.38 42.35 4.85
192 193 3.941483 CTGTCTGTTACTAATTGCCCAGG 59.059 47.826 0.00 0.00 0.00 4.45
193 194 4.393062 CACTGTCTGTTACTAATTGCCCAG 59.607 45.833 0.00 0.00 0.00 4.45
194 195 4.323417 CACTGTCTGTTACTAATTGCCCA 58.677 43.478 0.00 0.00 0.00 5.36
195 196 3.127030 GCACTGTCTGTTACTAATTGCCC 59.873 47.826 0.00 0.00 0.00 5.36
196 197 3.751175 TGCACTGTCTGTTACTAATTGCC 59.249 43.478 0.00 0.00 0.00 4.52
197 198 4.670221 GCTGCACTGTCTGTTACTAATTGC 60.670 45.833 0.00 0.00 0.00 3.56
198 199 4.434725 CGCTGCACTGTCTGTTACTAATTG 60.435 45.833 0.00 0.00 0.00 2.32
199 200 3.679980 CGCTGCACTGTCTGTTACTAATT 59.320 43.478 0.00 0.00 0.00 1.40
200 201 3.254060 CGCTGCACTGTCTGTTACTAAT 58.746 45.455 0.00 0.00 0.00 1.73
201 202 2.672714 CGCTGCACTGTCTGTTACTAA 58.327 47.619 0.00 0.00 0.00 2.24
202 203 1.668919 GCGCTGCACTGTCTGTTACTA 60.669 52.381 0.00 0.00 0.00 1.82
203 204 0.946221 GCGCTGCACTGTCTGTTACT 60.946 55.000 0.00 0.00 0.00 2.24
204 205 1.493311 GCGCTGCACTGTCTGTTAC 59.507 57.895 0.00 0.00 0.00 2.50
205 206 1.667830 GGCGCTGCACTGTCTGTTA 60.668 57.895 7.64 0.00 0.00 2.41
206 207 2.099652 TAGGCGCTGCACTGTCTGTT 62.100 55.000 7.64 0.00 0.00 3.16
207 208 2.099652 TTAGGCGCTGCACTGTCTGT 62.100 55.000 7.64 0.00 0.00 3.41
208 209 1.357258 CTTAGGCGCTGCACTGTCTG 61.357 60.000 7.64 0.00 0.00 3.51
209 210 1.079543 CTTAGGCGCTGCACTGTCT 60.080 57.895 7.64 0.00 0.00 3.41
210 211 2.103042 CCTTAGGCGCTGCACTGTC 61.103 63.158 7.64 0.00 0.00 3.51
211 212 2.046892 CCTTAGGCGCTGCACTGT 60.047 61.111 7.64 0.00 0.00 3.55
212 213 2.821366 CCCTTAGGCGCTGCACTG 60.821 66.667 7.64 0.00 0.00 3.66
230 231 1.062587 GTTGTAATGTGCAGCGGCTAG 59.937 52.381 10.92 0.00 41.91 3.42
231 232 1.083489 GTTGTAATGTGCAGCGGCTA 58.917 50.000 10.92 0.00 41.91 3.93
232 233 0.606401 AGTTGTAATGTGCAGCGGCT 60.606 50.000 10.92 0.00 41.91 5.52
233 234 0.454957 CAGTTGTAATGTGCAGCGGC 60.455 55.000 0.31 0.31 41.68 6.53
234 235 0.874390 ACAGTTGTAATGTGCAGCGG 59.126 50.000 0.00 0.00 0.00 5.52
235 236 1.400113 CCACAGTTGTAATGTGCAGCG 60.400 52.381 2.01 0.00 45.37 5.18
236 237 1.666888 GCCACAGTTGTAATGTGCAGC 60.667 52.381 2.01 0.00 45.37 5.25
237 238 1.400113 CGCCACAGTTGTAATGTGCAG 60.400 52.381 2.01 0.00 45.37 4.41
238 239 0.590682 CGCCACAGTTGTAATGTGCA 59.409 50.000 2.01 0.00 45.37 4.57
239 240 0.729140 GCGCCACAGTTGTAATGTGC 60.729 55.000 0.00 0.00 45.37 4.57
240 241 0.109781 GGCGCCACAGTTGTAATGTG 60.110 55.000 24.80 0.63 46.11 3.21
241 242 0.250727 AGGCGCCACAGTTGTAATGT 60.251 50.000 31.54 0.00 0.00 2.71
242 243 1.665679 CTAGGCGCCACAGTTGTAATG 59.334 52.381 31.54 0.00 0.00 1.90
243 244 2.012051 GCTAGGCGCCACAGTTGTAAT 61.012 52.381 31.54 5.89 0.00 1.89
244 245 0.672401 GCTAGGCGCCACAGTTGTAA 60.672 55.000 31.54 0.72 0.00 2.41
245 246 1.079405 GCTAGGCGCCACAGTTGTA 60.079 57.895 31.54 9.35 0.00 2.41
246 247 2.358737 GCTAGGCGCCACAGTTGT 60.359 61.111 31.54 8.51 0.00 3.32
247 248 2.046892 AGCTAGGCGCCACAGTTG 60.047 61.111 31.54 10.03 40.39 3.16
248 249 2.266055 GAGCTAGGCGCCACAGTT 59.734 61.111 31.54 22.60 40.39 3.16
249 250 2.997315 TGAGCTAGGCGCCACAGT 60.997 61.111 31.54 10.73 40.39 3.55
250 251 2.202851 CTGAGCTAGGCGCCACAG 60.203 66.667 31.54 25.22 40.39 3.66
251 252 2.679996 TCTGAGCTAGGCGCCACA 60.680 61.111 31.54 15.42 40.39 4.17
252 253 2.105930 CTCTGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
253 254 3.150335 CCTCTGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
254 255 3.151022 ACCTCTGAGCTAGGCGCC 61.151 66.667 21.89 21.89 40.39 6.53
255 256 2.105930 CACCTCTGAGCTAGGCGC 59.894 66.667 0.00 0.00 37.67 6.53
256 257 2.105930 GCACCTCTGAGCTAGGCG 59.894 66.667 0.60 0.00 37.67 5.52
257 258 1.143620 CAGCACCTCTGAGCTAGGC 59.856 63.158 0.60 0.00 45.72 3.93
258 259 1.143620 GCAGCACCTCTGAGCTAGG 59.856 63.158 0.00 0.00 45.72 3.02
259 260 0.459934 GTGCAGCACCTCTGAGCTAG 60.460 60.000 15.27 0.00 45.72 3.42
260 261 0.902048 AGTGCAGCACCTCTGAGCTA 60.902 55.000 22.41 0.00 45.72 3.32
261 262 2.215625 AGTGCAGCACCTCTGAGCT 61.216 57.895 22.41 0.00 45.72 4.09
262 263 2.033755 CAGTGCAGCACCTCTGAGC 61.034 63.158 22.41 0.00 45.72 4.26
263 264 2.033755 GCAGTGCAGCACCTCTGAG 61.034 63.158 22.41 6.62 45.72 3.35
264 265 2.031616 GCAGTGCAGCACCTCTGA 59.968 61.111 22.41 0.00 45.72 3.27
265 266 1.170919 AAAGCAGTGCAGCACCTCTG 61.171 55.000 22.41 14.84 45.62 3.35
266 267 1.150081 AAAGCAGTGCAGCACCTCT 59.850 52.632 22.41 15.77 34.49 3.69
267 268 1.285023 CAAAGCAGTGCAGCACCTC 59.715 57.895 22.41 13.71 34.49 3.85
268 269 2.198287 CCAAAGCAGTGCAGCACCT 61.198 57.895 22.41 10.20 34.49 4.00
269 270 2.337532 CCAAAGCAGTGCAGCACC 59.662 61.111 22.41 7.82 34.49 5.01
270 271 1.299620 CACCAAAGCAGTGCAGCAC 60.300 57.895 18.55 18.55 36.85 4.40
271 272 3.121934 CACCAAAGCAGTGCAGCA 58.878 55.556 19.20 0.00 36.85 4.41
276 277 4.347453 GCCCGCACCAAAGCAGTG 62.347 66.667 0.00 0.00 38.30 3.66
300 301 3.941188 ACCTGTCCACCGTGGCAG 61.941 66.667 24.16 24.16 39.63 4.85
301 302 4.248842 CACCTGTCCACCGTGGCA 62.249 66.667 13.19 12.68 37.47 4.92
302 303 4.250305 ACACCTGTCCACCGTGGC 62.250 66.667 13.19 8.69 37.47 5.01
303 304 2.280797 CACACCTGTCCACCGTGG 60.281 66.667 11.73 11.73 39.43 4.94
304 305 2.972505 GCACACCTGTCCACCGTG 60.973 66.667 0.00 0.00 0.00 4.94
305 306 3.037686 TTGCACACCTGTCCACCGT 62.038 57.895 0.00 0.00 0.00 4.83
306 307 2.203139 TTGCACACCTGTCCACCG 60.203 61.111 0.00 0.00 0.00 4.94
307 308 2.542907 CGTTGCACACCTGTCCACC 61.543 63.158 0.00 0.00 0.00 4.61
308 309 3.022287 CGTTGCACACCTGTCCAC 58.978 61.111 0.00 0.00 0.00 4.02
309 310 2.899838 GCGTTGCACACCTGTCCA 60.900 61.111 0.00 0.00 0.00 4.02
310 311 3.660111 GGCGTTGCACACCTGTCC 61.660 66.667 0.00 0.00 0.00 4.02
311 312 3.660111 GGGCGTTGCACACCTGTC 61.660 66.667 0.00 0.00 0.00 3.51
314 315 4.954970 CTGGGGCGTTGCACACCT 62.955 66.667 0.00 0.00 30.93 4.00
315 316 4.947147 TCTGGGGCGTTGCACACC 62.947 66.667 0.00 0.00 30.93 4.16
316 317 3.357079 CTCTGGGGCGTTGCACAC 61.357 66.667 0.00 0.00 30.93 3.82
317 318 4.641645 CCTCTGGGGCGTTGCACA 62.642 66.667 0.00 0.00 30.93 4.57
318 319 4.643387 ACCTCTGGGGCGTTGCAC 62.643 66.667 0.00 0.00 39.10 4.57
319 320 4.641645 CACCTCTGGGGCGTTGCA 62.642 66.667 0.00 0.00 39.10 4.08
366 367 1.122849 TTTCGTGTAGCGTTCGACAC 58.877 50.000 6.98 6.98 42.83 3.67
367 368 1.782569 CTTTTCGTGTAGCGTTCGACA 59.217 47.619 0.00 0.00 42.13 4.35
368 369 1.123756 CCTTTTCGTGTAGCGTTCGAC 59.876 52.381 0.00 0.00 42.13 4.20
369 370 1.269206 ACCTTTTCGTGTAGCGTTCGA 60.269 47.619 0.00 0.00 42.13 3.71
370 371 1.123756 GACCTTTTCGTGTAGCGTTCG 59.876 52.381 0.00 0.00 42.13 3.95
371 372 2.129607 TGACCTTTTCGTGTAGCGTTC 58.870 47.619 0.00 0.00 42.13 3.95
372 373 2.228138 TGACCTTTTCGTGTAGCGTT 57.772 45.000 0.00 0.00 42.13 4.84
373 374 2.132762 CTTGACCTTTTCGTGTAGCGT 58.867 47.619 0.00 0.00 42.13 5.07
374 375 1.136336 GCTTGACCTTTTCGTGTAGCG 60.136 52.381 0.00 0.00 43.01 4.26
375 376 1.136336 CGCTTGACCTTTTCGTGTAGC 60.136 52.381 0.00 0.00 0.00 3.58
376 377 1.136336 GCGCTTGACCTTTTCGTGTAG 60.136 52.381 0.00 0.00 0.00 2.74
377 378 0.863144 GCGCTTGACCTTTTCGTGTA 59.137 50.000 0.00 0.00 0.00 2.90
378 379 1.647084 GCGCTTGACCTTTTCGTGT 59.353 52.632 0.00 0.00 0.00 4.49
379 380 1.438710 CGCGCTTGACCTTTTCGTG 60.439 57.895 5.56 0.00 0.00 4.35
380 381 1.885850 ACGCGCTTGACCTTTTCGT 60.886 52.632 5.73 0.00 0.00 3.85
381 382 1.438710 CACGCGCTTGACCTTTTCG 60.439 57.895 8.42 0.00 0.00 3.46
382 383 0.306533 TTCACGCGCTTGACCTTTTC 59.693 50.000 17.01 0.00 0.00 2.29
383 384 0.736053 TTTCACGCGCTTGACCTTTT 59.264 45.000 17.01 0.00 0.00 2.27
384 385 0.951558 ATTTCACGCGCTTGACCTTT 59.048 45.000 17.01 0.00 0.00 3.11
385 386 1.732259 CTATTTCACGCGCTTGACCTT 59.268 47.619 17.01 6.85 0.00 3.50
386 387 1.337823 ACTATTTCACGCGCTTGACCT 60.338 47.619 17.01 9.16 0.00 3.85
387 388 1.076332 ACTATTTCACGCGCTTGACC 58.924 50.000 17.01 0.00 0.00 4.02
388 389 2.875080 AACTATTTCACGCGCTTGAC 57.125 45.000 17.01 0.00 0.00 3.18
389 390 3.889196 AAAACTATTTCACGCGCTTGA 57.111 38.095 13.17 13.17 0.00 3.02
390 391 3.532977 CGTAAAACTATTTCACGCGCTTG 59.467 43.478 5.73 7.71 0.00 4.01
391 392 3.728600 CGTAAAACTATTTCACGCGCTT 58.271 40.909 5.73 0.00 0.00 4.68
392 393 2.473376 GCGTAAAACTATTTCACGCGCT 60.473 45.455 5.73 0.00 39.38 5.92
393 394 1.830044 GCGTAAAACTATTTCACGCGC 59.170 47.619 5.73 0.00 39.38 6.86
394 395 3.331178 GAGCGTAAAACTATTTCACGCG 58.669 45.455 14.42 3.53 45.42 6.01
395 396 3.331178 CGAGCGTAAAACTATTTCACGC 58.669 45.455 12.88 12.88 43.61 5.34
396 397 3.365820 ACCGAGCGTAAAACTATTTCACG 59.634 43.478 0.00 0.00 33.07 4.35
397 398 4.916099 ACCGAGCGTAAAACTATTTCAC 57.084 40.909 0.00 0.00 0.00 3.18
398 399 4.989797 TGAACCGAGCGTAAAACTATTTCA 59.010 37.500 0.00 0.00 0.00 2.69
399 400 5.520022 TGAACCGAGCGTAAAACTATTTC 57.480 39.130 0.00 0.00 0.00 2.17
400 401 6.490566 AATGAACCGAGCGTAAAACTATTT 57.509 33.333 0.00 0.00 0.00 1.40
401 402 6.490566 AAATGAACCGAGCGTAAAACTATT 57.509 33.333 0.00 0.00 0.00 1.73
402 403 5.220340 CGAAATGAACCGAGCGTAAAACTAT 60.220 40.000 0.00 0.00 0.00 2.12
403 404 4.090354 CGAAATGAACCGAGCGTAAAACTA 59.910 41.667 0.00 0.00 0.00 2.24
404 405 3.120786 CGAAATGAACCGAGCGTAAAACT 60.121 43.478 0.00 0.00 0.00 2.66
405 406 3.150731 CGAAATGAACCGAGCGTAAAAC 58.849 45.455 0.00 0.00 0.00 2.43
406 407 2.801679 ACGAAATGAACCGAGCGTAAAA 59.198 40.909 0.00 0.00 0.00 1.52
407 408 2.156117 CACGAAATGAACCGAGCGTAAA 59.844 45.455 0.00 0.00 0.00 2.01
408 409 1.722464 CACGAAATGAACCGAGCGTAA 59.278 47.619 0.00 0.00 0.00 3.18
409 410 1.068402 TCACGAAATGAACCGAGCGTA 60.068 47.619 0.00 0.00 33.02 4.42
410 411 0.319211 TCACGAAATGAACCGAGCGT 60.319 50.000 0.00 0.00 33.02 5.07
411 412 0.787787 TTCACGAAATGAACCGAGCG 59.212 50.000 0.00 0.00 42.62 5.03
419 420 4.402583 GACGCAATGAATTCACGAAATGA 58.597 39.130 19.97 0.00 34.65 2.57
420 421 3.543494 GGACGCAATGAATTCACGAAATG 59.457 43.478 19.97 11.52 0.00 2.32
421 422 3.190327 TGGACGCAATGAATTCACGAAAT 59.810 39.130 19.97 3.92 0.00 2.17
422 423 2.550180 TGGACGCAATGAATTCACGAAA 59.450 40.909 19.97 5.73 0.00 3.46
423 424 2.095969 GTGGACGCAATGAATTCACGAA 60.096 45.455 19.97 6.01 0.00 3.85
424 425 1.463056 GTGGACGCAATGAATTCACGA 59.537 47.619 19.97 0.00 0.00 4.35
425 426 1.196581 TGTGGACGCAATGAATTCACG 59.803 47.619 11.07 12.57 0.00 4.35
426 427 2.987413 TGTGGACGCAATGAATTCAC 57.013 45.000 11.07 0.00 0.00 3.18
427 428 2.819019 ACATGTGGACGCAATGAATTCA 59.181 40.909 11.26 11.26 0.00 2.57
428 429 3.119884 TGACATGTGGACGCAATGAATTC 60.120 43.478 1.15 0.00 0.00 2.17
429 430 2.819019 TGACATGTGGACGCAATGAATT 59.181 40.909 1.15 0.00 0.00 2.17
430 431 2.435422 TGACATGTGGACGCAATGAAT 58.565 42.857 1.15 0.00 0.00 2.57
431 432 1.889545 TGACATGTGGACGCAATGAA 58.110 45.000 1.15 0.00 0.00 2.57
432 433 1.889545 TTGACATGTGGACGCAATGA 58.110 45.000 1.15 0.00 0.00 2.57
433 434 2.702898 TTTGACATGTGGACGCAATG 57.297 45.000 1.15 0.00 0.00 2.82
434 435 3.940209 ATTTTGACATGTGGACGCAAT 57.060 38.095 1.15 0.00 0.00 3.56
435 436 3.181482 ACAATTTTGACATGTGGACGCAA 60.181 39.130 1.15 0.00 0.00 4.85
436 437 2.360483 ACAATTTTGACATGTGGACGCA 59.640 40.909 1.15 0.00 0.00 5.24
437 438 2.979813 GACAATTTTGACATGTGGACGC 59.020 45.455 1.15 0.00 0.00 5.19
438 439 4.221926 TGACAATTTTGACATGTGGACG 57.778 40.909 1.15 0.00 0.00 4.79
439 440 7.481275 AAATTGACAATTTTGACATGTGGAC 57.519 32.000 18.41 0.00 37.84 4.02
450 451 8.154774 ACGCAATCGGCAAAATTGACAATTTT 62.155 34.615 26.12 26.12 44.18 1.82
451 452 4.377226 CGCAATCGGCAAAATTGACAATTT 60.377 37.500 18.41 18.41 45.17 1.82
452 453 3.123284 CGCAATCGGCAAAATTGACAATT 59.877 39.130 7.62 7.62 45.17 2.32
453 454 2.667481 CGCAATCGGCAAAATTGACAAT 59.333 40.909 8.59 0.00 45.17 2.71
454 455 2.057316 CGCAATCGGCAAAATTGACAA 58.943 42.857 8.59 0.00 45.17 3.18
455 456 1.000827 ACGCAATCGGCAAAATTGACA 60.001 42.857 8.59 0.00 45.17 3.58
456 457 1.648681 GACGCAATCGGCAAAATTGAC 59.351 47.619 8.59 0.00 44.84 3.18
457 458 1.975837 GACGCAATCGGCAAAATTGA 58.024 45.000 8.59 0.00 44.84 2.57
465 466 0.247695 GCTTTAGTGACGCAATCGGC 60.248 55.000 0.00 0.00 45.94 5.54
466 467 0.373716 GGCTTTAGTGACGCAATCGG 59.626 55.000 0.00 0.00 40.69 4.18
467 468 1.061131 CTGGCTTTAGTGACGCAATCG 59.939 52.381 0.00 0.00 42.43 3.34
475 476 1.419762 TGAACAGCCTGGCTTTAGTGA 59.580 47.619 20.79 2.13 36.40 3.41
490 491 1.342496 CCTCAGTCTGTGCTCTGAACA 59.658 52.381 0.00 0.00 39.67 3.18
502 503 1.014804 AGGACCTCCATCCTCAGTCT 58.985 55.000 0.00 0.00 46.92 3.24
586 587 1.165270 GCACAGCGTGTTCCCTTAAT 58.835 50.000 9.76 0.00 35.75 1.40
616 617 3.127533 AGTGATCTTTGCCGCCGC 61.128 61.111 0.00 0.00 0.00 6.53
707 3050 3.119291 CCGTACTCATCATTGTCAGCTC 58.881 50.000 0.00 0.00 0.00 4.09
730 3073 2.034305 GTCGCTATCACCGTCCTTACAT 59.966 50.000 0.00 0.00 0.00 2.29
733 3076 0.659427 CGTCGCTATCACCGTCCTTA 59.341 55.000 0.00 0.00 0.00 2.69
798 3141 3.320879 CTGCCGATCCAGCACCAGT 62.321 63.158 1.02 0.00 36.01 4.00
982 4268 3.670377 GTTGGTCGGTGGCTTGGC 61.670 66.667 0.00 0.00 0.00 4.52
1026 4312 4.089239 TTGGCCGGCATCAGCGTA 62.089 61.111 30.85 0.00 43.41 4.42
1241 4527 2.380081 CCACGGACGGCAATAGAAC 58.620 57.895 0.00 0.00 0.00 3.01
1763 5049 3.329889 CCCCTGTAGCTGGGCACA 61.330 66.667 1.88 0.00 40.67 4.57
1913 5199 2.037136 GCTGAGCGTGATGTTGCCT 61.037 57.895 0.00 0.00 0.00 4.75
2093 5379 0.522705 CGCATGCACACAAGATGAGC 60.523 55.000 19.57 0.00 44.48 4.26
2128 5414 2.615493 GCCTCGATTGTTTCCTCTCCAA 60.615 50.000 0.00 0.00 0.00 3.53
2252 5541 4.870123 TTTTGTGAACATTCATGGAGGG 57.130 40.909 0.00 0.00 39.73 4.30
2276 5565 7.696453 CACTAAACGAAGAAAGTGTCAACAAAT 59.304 33.333 0.00 0.00 35.66 2.32
2299 5588 4.292186 AGTTGGTCATACTTGCATCACT 57.708 40.909 0.00 0.00 0.00 3.41
2300 5589 5.376854 AAAGTTGGTCATACTTGCATCAC 57.623 39.130 0.00 0.00 36.06 3.06
2301 5590 7.362834 CCATTAAAGTTGGTCATACTTGCATCA 60.363 37.037 0.00 0.00 36.06 3.07
2302 5591 6.974622 CCATTAAAGTTGGTCATACTTGCATC 59.025 38.462 0.00 0.00 36.06 3.91
2303 5592 6.437162 ACCATTAAAGTTGGTCATACTTGCAT 59.563 34.615 0.00 0.00 44.15 3.96
2305 5594 6.267496 ACCATTAAAGTTGGTCATACTTGC 57.733 37.500 0.00 0.00 44.15 4.01
2315 5604 6.586082 GCTATGTGTTTGACCATTAAAGTTGG 59.414 38.462 0.00 0.00 40.26 3.77
2316 5605 7.144661 TGCTATGTGTTTGACCATTAAAGTTG 58.855 34.615 0.00 0.00 0.00 3.16
2319 5608 7.370383 AGTTGCTATGTGTTTGACCATTAAAG 58.630 34.615 0.00 0.00 0.00 1.85
2321 5610 6.714810 AGAGTTGCTATGTGTTTGACCATTAA 59.285 34.615 0.00 0.00 0.00 1.40
2323 5612 5.048504 CAGAGTTGCTATGTGTTTGACCATT 60.049 40.000 0.00 0.00 0.00 3.16
2324 5613 4.456911 CAGAGTTGCTATGTGTTTGACCAT 59.543 41.667 0.00 0.00 0.00 3.55
2325 5614 3.814842 CAGAGTTGCTATGTGTTTGACCA 59.185 43.478 0.00 0.00 0.00 4.02
2327 5616 5.673337 TTCAGAGTTGCTATGTGTTTGAC 57.327 39.130 0.00 0.00 0.00 3.18
2328 5617 8.565896 AATATTCAGAGTTGCTATGTGTTTGA 57.434 30.769 0.00 0.00 0.00 2.69
2338 5697 4.142600 GCCGTGAAAATATTCAGAGTTGCT 60.143 41.667 0.00 0.00 45.88 3.91
2346 5705 9.645059 TCAATAAATTTGCCGTGAAAATATTCA 57.355 25.926 0.00 0.00 43.18 2.57
2351 5710 6.455380 CGCATCAATAAATTTGCCGTGAAAAT 60.455 34.615 0.00 0.00 0.00 1.82
2369 5729 8.773645 CCATTAAAGTTATCATACTCGCATCAA 58.226 33.333 0.00 0.00 0.00 2.57
2376 5736 9.109393 TGCTTGACCATTAAAGTTATCATACTC 57.891 33.333 0.00 0.00 0.00 2.59
2659 6022 6.532826 ACATGTTGGTTTGGCATAAATCTTT 58.467 32.000 0.00 0.00 0.00 2.52
2661 6024 5.743636 ACATGTTGGTTTGGCATAAATCT 57.256 34.783 0.00 0.00 0.00 2.40
2670 6033 5.177326 CCATCCAATTACATGTTGGTTTGG 58.823 41.667 17.57 17.57 45.05 3.28
2672 6035 6.432403 AACCATCCAATTACATGTTGGTTT 57.568 33.333 18.75 7.42 45.05 3.27
2685 6048 3.200825 CACTGTCCTCCTAACCATCCAAT 59.799 47.826 0.00 0.00 0.00 3.16
2775 6139 2.032528 CGTTGCTGGAAGGCCTGA 59.967 61.111 5.69 0.00 35.28 3.86
2786 6150 1.372997 CCTAGTGACGCACGTTGCT 60.373 57.895 0.00 1.62 42.25 3.91
2903 6267 5.455392 GCTACAAGTACAACGTAAGAGACA 58.545 41.667 0.00 0.00 43.62 3.41
2904 6268 4.552660 CGCTACAAGTACAACGTAAGAGAC 59.447 45.833 0.00 0.00 43.62 3.36
2905 6269 4.214119 ACGCTACAAGTACAACGTAAGAGA 59.786 41.667 0.00 0.00 43.62 3.10
2907 6271 4.221342 CACGCTACAAGTACAACGTAAGA 58.779 43.478 0.00 0.00 43.62 2.10
2913 7085 2.443887 TCCCACGCTACAAGTACAAC 57.556 50.000 0.00 0.00 0.00 3.32
2924 7096 0.179100 CAAGATCGACATCCCACGCT 60.179 55.000 0.00 0.00 0.00 5.07
2948 7120 1.154908 GCACGCTACAACGACAACG 60.155 57.895 0.00 0.00 45.75 4.10
2989 7161 0.902531 TCCAAGCTACTACCACCAGC 59.097 55.000 0.00 0.00 35.49 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.