Multiple sequence alignment - TraesCS2B01G269800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G269800 chr2B 100.000 2865 0 0 1 2865 367789949 367792813 0.000000e+00 5291
1 TraesCS2B01G269800 chr7B 91.743 1647 120 8 1066 2701 697085419 697087060 0.000000e+00 2274
2 TraesCS2B01G269800 chr7B 95.888 535 21 1 532 1066 697084843 697085376 0.000000e+00 865
3 TraesCS2B01G269800 chr7B 84.884 516 72 5 1 513 595169342 595169854 1.520000e-142 516
4 TraesCS2B01G269800 chr7A 91.621 1647 122 8 1066 2701 211716404 211718045 0.000000e+00 2263
5 TraesCS2B01G269800 chr7A 84.181 1062 156 10 1 1055 670783625 670782569 0.000000e+00 1020
6 TraesCS2B01G269800 chr7A 84.091 1056 156 10 1 1049 670797269 670798319 0.000000e+00 1009
7 TraesCS2B01G269800 chr7A 96.075 535 20 1 532 1066 211715828 211716361 0.000000e+00 870
8 TraesCS2B01G269800 chr7A 85.984 635 86 3 1233 1865 670798754 670799387 0.000000e+00 676
9 TraesCS2B01G269800 chr7A 85.968 620 85 2 1247 1865 670782126 670781508 0.000000e+00 662
10 TraesCS2B01G269800 chr2D 86.086 654 88 3 1213 1865 287137619 287138270 0.000000e+00 701
11 TraesCS2B01G269800 chr2D 85.512 283 30 9 779 1061 287137134 287137405 4.670000e-73 285
12 TraesCS2B01G269800 chr4B 89.773 264 24 3 3 265 535335931 535336192 4.570000e-88 335
13 TraesCS2B01G269800 chr1D 89.121 239 24 2 823 1061 11362089 11361853 2.160000e-76 296


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G269800 chr2B 367789949 367792813 2864 False 5291.0 5291 100.0000 1 2865 1 chr2B.!!$F1 2864
1 TraesCS2B01G269800 chr7B 697084843 697087060 2217 False 1569.5 2274 93.8155 532 2701 2 chr7B.!!$F2 2169
2 TraesCS2B01G269800 chr7B 595169342 595169854 512 False 516.0 516 84.8840 1 513 1 chr7B.!!$F1 512
3 TraesCS2B01G269800 chr7A 211715828 211718045 2217 False 1566.5 2263 93.8480 532 2701 2 chr7A.!!$F1 2169
4 TraesCS2B01G269800 chr7A 670797269 670799387 2118 False 842.5 1009 85.0375 1 1865 2 chr7A.!!$F2 1864
5 TraesCS2B01G269800 chr7A 670781508 670783625 2117 True 841.0 1020 85.0745 1 1865 2 chr7A.!!$R1 1864
6 TraesCS2B01G269800 chr2D 287137134 287138270 1136 False 493.0 701 85.7990 779 1865 2 chr2D.!!$F1 1086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 525 0.032403 TGCAAACCACATGCTCAAGC 59.968 50.0 0.0 0.00 44.14 4.01 F
785 789 0.947244 GAATACCATGCGAGCAAGGG 59.053 55.0 21.2 17.85 38.94 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1712 1979 0.252103 TGACCCCTCCCTCTACACAC 60.252 60.0 0.0 0.0 0.0 3.82 R
2494 2770 0.318762 GACTGAAGCCCGTCTCAAGT 59.681 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.484264 CGAGTGGGTGTTCAAGGAATTC 59.516 50.000 0.00 0.00 0.00 2.17
32 33 2.158667 AGTGGGTGTTCAAGGAATTCGT 60.159 45.455 0.00 0.00 0.00 3.85
33 34 2.031157 GTGGGTGTTCAAGGAATTCGTG 60.031 50.000 0.58 1.48 0.00 4.35
36 37 2.225727 GGTGTTCAAGGAATTCGTGTCC 59.774 50.000 0.58 0.00 35.17 4.02
66 67 3.317406 AGGGAAGGCTCCAAAAACAATT 58.683 40.909 0.00 0.00 44.51 2.32
69 70 4.526650 GGGAAGGCTCCAAAAACAATTCTA 59.473 41.667 0.00 0.00 44.51 2.10
81 82 8.491950 CCAAAAACAATTCTAACGGGTAATTTG 58.508 33.333 0.00 0.00 0.00 2.32
88 89 6.827586 TTCTAACGGGTAATTTGAAAGCAT 57.172 33.333 0.00 0.00 0.00 3.79
89 90 7.925043 TTCTAACGGGTAATTTGAAAGCATA 57.075 32.000 0.00 0.00 0.00 3.14
90 91 8.514330 TTCTAACGGGTAATTTGAAAGCATAT 57.486 30.769 0.00 0.00 0.00 1.78
91 92 8.514330 TCTAACGGGTAATTTGAAAGCATATT 57.486 30.769 0.00 0.00 31.86 1.28
93 94 7.404671 AACGGGTAATTTGAAAGCATATTCT 57.595 32.000 0.00 0.00 30.11 2.40
94 95 7.404671 ACGGGTAATTTGAAAGCATATTCTT 57.595 32.000 0.00 0.00 30.11 2.52
95 96 7.257722 ACGGGTAATTTGAAAGCATATTCTTG 58.742 34.615 0.00 0.00 30.11 3.02
96 97 7.093945 ACGGGTAATTTGAAAGCATATTCTTGT 60.094 33.333 0.00 0.00 30.11 3.16
103 104 9.630098 ATTTGAAAGCATATTCTTGTTACACTG 57.370 29.630 0.00 0.00 0.00 3.66
104 105 6.611381 TGAAAGCATATTCTTGTTACACTGC 58.389 36.000 0.00 0.00 0.00 4.40
105 106 5.567138 AAGCATATTCTTGTTACACTGCC 57.433 39.130 0.00 0.00 0.00 4.85
107 108 5.195940 AGCATATTCTTGTTACACTGCCAT 58.804 37.500 0.00 0.00 0.00 4.40
109 110 5.973565 GCATATTCTTGTTACACTGCCATTC 59.026 40.000 0.00 0.00 0.00 2.67
110 111 6.183360 GCATATTCTTGTTACACTGCCATTCT 60.183 38.462 0.00 0.00 0.00 2.40
111 112 7.012327 GCATATTCTTGTTACACTGCCATTCTA 59.988 37.037 0.00 0.00 0.00 2.10
112 113 6.743575 ATTCTTGTTACACTGCCATTCTAC 57.256 37.500 0.00 0.00 0.00 2.59
117 118 4.994852 TGTTACACTGCCATTCTACTGAAC 59.005 41.667 0.00 0.00 34.71 3.18
119 120 3.668447 ACACTGCCATTCTACTGAACTG 58.332 45.455 0.00 0.00 34.71 3.16
124 125 5.363868 ACTGCCATTCTACTGAACTGCTATA 59.636 40.000 0.00 0.00 34.83 1.31
129 130 7.319646 CCATTCTACTGAACTGCTATATCTCC 58.680 42.308 0.00 0.00 34.71 3.71
130 131 6.902771 TTCTACTGAACTGCTATATCTCCC 57.097 41.667 0.00 0.00 0.00 4.30
132 133 7.331089 TCTACTGAACTGCTATATCTCCCTA 57.669 40.000 0.00 0.00 0.00 3.53
136 137 7.471041 ACTGAACTGCTATATCTCCCTACATA 58.529 38.462 0.00 0.00 0.00 2.29
137 138 7.394923 ACTGAACTGCTATATCTCCCTACATAC 59.605 40.741 0.00 0.00 0.00 2.39
138 139 7.238710 TGAACTGCTATATCTCCCTACATACA 58.761 38.462 0.00 0.00 0.00 2.29
145 146 4.544564 ATCTCCCTACATACACCTCACT 57.455 45.455 0.00 0.00 0.00 3.41
146 147 3.632333 TCTCCCTACATACACCTCACTG 58.368 50.000 0.00 0.00 0.00 3.66
147 148 3.268595 TCTCCCTACATACACCTCACTGA 59.731 47.826 0.00 0.00 0.00 3.41
151 152 4.098654 CCCTACATACACCTCACTGAGAAG 59.901 50.000 7.69 2.28 0.00 2.85
167 168 7.503566 TCACTGAGAAGGTCATTTCTTCATTTT 59.496 33.333 6.60 0.00 42.09 1.82
204 205 3.681897 CGTGCAATGGAGAAGGCTATATC 59.318 47.826 0.00 0.00 0.00 1.63
223 224 1.207791 CTTCCCAGTGGCCTGATACT 58.792 55.000 3.32 0.00 41.50 2.12
226 227 1.007842 TCCCAGTGGCCTGATACTACA 59.992 52.381 3.32 0.00 41.50 2.74
271 272 4.649088 ACTACAAAAAGCAAGGGAACAC 57.351 40.909 0.00 0.00 0.00 3.32
289 290 4.838904 ACACCTAGGACCTGTTTATTCC 57.161 45.455 17.98 0.00 0.00 3.01
295 296 7.178451 CACCTAGGACCTGTTTATTCCAAAAAT 59.822 37.037 17.98 0.00 0.00 1.82
301 302 8.027189 GGACCTGTTTATTCCAAAAATAGTGAC 58.973 37.037 0.00 0.00 0.00 3.67
322 323 4.363999 ACTTCAGAGACGAGTTTCACAAG 58.636 43.478 0.00 1.29 0.00 3.16
325 326 2.474359 CAGAGACGAGTTTCACAAGCTG 59.526 50.000 0.00 0.00 0.00 4.24
328 329 2.035961 AGACGAGTTTCACAAGCTGCTA 59.964 45.455 0.90 0.00 0.00 3.49
337 338 8.239038 AGTTTCACAAGCTGCTAGAGTATATA 57.761 34.615 0.90 0.00 0.00 0.86
340 341 7.208225 TCACAAGCTGCTAGAGTATATAGTG 57.792 40.000 0.90 0.00 0.00 2.74
349 350 9.146984 CTGCTAGAGTATATAGTGACAGTAGAC 57.853 40.741 0.00 0.00 0.00 2.59
355 356 8.592105 AGTATATAGTGACAGTAGACGAGTTC 57.408 38.462 0.00 0.00 0.00 3.01
361 362 3.562973 TGACAGTAGACGAGTTCGAAACT 59.437 43.478 8.72 0.00 46.38 2.66
370 371 0.250901 AGTTCGAAACTGCATGGGCT 60.251 50.000 0.00 0.00 41.01 5.19
371 372 0.598065 GTTCGAAACTGCATGGGCTT 59.402 50.000 0.00 0.00 41.91 4.35
376 377 1.545582 GAAACTGCATGGGCTTGCTTA 59.454 47.619 12.78 0.00 43.18 3.09
403 404 8.868522 TTGAGAAATATCAACTTGAAGACCAT 57.131 30.769 0.00 0.00 34.31 3.55
424 425 5.413833 CCATCCATGGCTCACTCAAATATAC 59.586 44.000 6.96 0.00 41.75 1.47
434 435 7.380065 GGCTCACTCAAATATACGAAGTTAGAG 59.620 40.741 0.00 0.00 37.78 2.43
466 467 4.427312 CAAAGCCATATTTTGCAGGAGTC 58.573 43.478 0.00 0.00 0.00 3.36
472 473 4.946157 CCATATTTTGCAGGAGTCTTCTGT 59.054 41.667 9.98 0.00 34.89 3.41
474 475 3.558931 TTTTGCAGGAGTCTTCTGTGA 57.441 42.857 9.98 0.00 34.89 3.58
484 485 4.249661 GAGTCTTCTGTGAAAGGATGACC 58.750 47.826 0.00 0.00 37.35 4.02
493 494 2.229792 GAAAGGATGACCAGCACACAA 58.770 47.619 0.00 0.00 38.94 3.33
498 499 1.333619 GATGACCAGCACACAACGTTT 59.666 47.619 0.00 0.00 0.00 3.60
499 500 0.449786 TGACCAGCACACAACGTTTG 59.550 50.000 0.00 3.44 0.00 2.93
524 525 0.032403 TGCAAACCACATGCTCAAGC 59.968 50.000 0.00 0.00 44.14 4.01
626 627 8.217111 AGGAAGATTTTCAAGAGAAGAAGACTT 58.783 33.333 0.00 0.00 35.64 3.01
665 666 7.211966 AGGAAAAGCATCATACATAGCATTC 57.788 36.000 0.00 0.00 0.00 2.67
698 701 8.246180 ACCTTGAAACTGCATATGTAGAAATTG 58.754 33.333 25.33 11.12 0.00 2.32
757 761 3.117794 GGCGTTGTTTTTAACCTTGGAC 58.882 45.455 0.00 0.00 0.00 4.02
785 789 0.947244 GAATACCATGCGAGCAAGGG 59.053 55.000 21.20 17.85 38.94 3.95
819 823 6.369059 GCTATGTATGAGCTGTTTCAACAT 57.631 37.500 0.00 0.00 38.41 2.71
828 832 6.279123 TGAGCTGTTTCAACATGCAATTTAA 58.721 32.000 0.00 0.00 38.41 1.52
886 890 1.893137 CAGAGCTAGGTGTGGTGTACA 59.107 52.381 11.08 0.00 36.82 2.90
1028 1032 1.818060 GTTGTGTTGCCATGCTATCCA 59.182 47.619 0.00 0.00 0.00 3.41
1081 1128 6.068010 TCATTGTATGGGTTCAAGTTCAGTT 58.932 36.000 0.00 0.00 0.00 3.16
1099 1146 7.545965 AGTTCAGTTCACTAAATATCAGAACCG 59.454 37.037 0.00 0.00 39.39 4.44
1101 1148 5.006746 CAGTTCACTAAATATCAGAACCGGC 59.993 44.000 0.00 0.00 39.39 6.13
1103 1150 2.800544 CACTAAATATCAGAACCGGCGG 59.199 50.000 27.06 27.06 0.00 6.13
1106 1153 3.547054 AAATATCAGAACCGGCGGTTA 57.453 42.857 41.03 27.77 46.95 2.85
1127 1296 6.764085 GGTTACTTGGGCTGTTACAAAAATTT 59.236 34.615 0.00 0.00 0.00 1.82
1128 1297 7.927092 GGTTACTTGGGCTGTTACAAAAATTTA 59.073 33.333 0.00 0.00 0.00 1.40
1165 1334 5.700722 ATTCAGTACACTTACACTCACGA 57.299 39.130 0.00 0.00 0.00 4.35
1167 1336 5.503662 TCAGTACACTTACACTCACGAAA 57.496 39.130 0.00 0.00 0.00 3.46
1262 1529 9.077885 TCTTTCTTTAACAGGTCATGCTAAATT 57.922 29.630 0.00 0.00 30.96 1.82
1281 1548 2.961536 TTGGGAGTTAGGGAGATCCA 57.038 50.000 0.47 0.00 38.24 3.41
1315 1582 7.067129 CACATCATGAAGAGATGGACAAAGAAT 59.933 37.037 4.68 0.00 45.49 2.40
1366 1633 6.432162 TGAAGATATATCAAGCAGGCAATTCC 59.568 38.462 15.08 0.00 0.00 3.01
1414 1681 4.082190 CACTCTAGCTTGTACAGTAAGGCA 60.082 45.833 0.00 0.00 0.00 4.75
1456 1723 3.869832 GGGATAAGAACACCGAAGCTTAC 59.130 47.826 0.00 0.00 0.00 2.34
1457 1724 4.501071 GGATAAGAACACCGAAGCTTACA 58.499 43.478 0.00 0.00 0.00 2.41
1458 1725 5.116882 GGATAAGAACACCGAAGCTTACAT 58.883 41.667 0.00 0.00 0.00 2.29
1528 1795 1.270414 ACCAGGAGAGTGATGGGCTG 61.270 60.000 0.00 0.00 38.48 4.85
1541 1808 3.915711 TGATGGGCTGGGATTACATGATA 59.084 43.478 0.00 0.00 0.00 2.15
1558 1825 2.599645 ATAAGGCAGCGGCTCCAGTG 62.600 60.000 9.17 2.16 37.50 3.66
1712 1979 5.192327 ACCAAGATCAAAGTTTTGCTCTG 57.808 39.130 10.64 3.94 41.30 3.35
1714 1981 4.980434 CCAAGATCAAAGTTTTGCTCTGTG 59.020 41.667 10.64 10.46 41.30 3.66
1806 2073 1.434555 CCGAAATGTACCAAGTGCGA 58.565 50.000 0.00 0.00 0.00 5.10
1830 2097 2.239654 TGGAAGGCCACAAGAGGAATAG 59.760 50.000 5.01 0.00 39.92 1.73
1895 2162 2.159179 TAGAGATAGCACTGCCCACA 57.841 50.000 0.00 0.00 0.00 4.17
1924 2191 1.080093 CATGCCTGGCTTGTGCTTG 60.080 57.895 22.56 5.54 39.59 4.01
1931 2199 1.935199 CTGGCTTGTGCTTGTTTTTGG 59.065 47.619 0.00 0.00 39.59 3.28
1944 2212 3.547746 TGTTTTTGGTAGCGAAGGTCTT 58.452 40.909 0.00 0.00 40.68 3.01
1946 2214 3.478857 TTTTGGTAGCGAAGGTCTTGA 57.521 42.857 0.00 0.00 40.68 3.02
1947 2215 2.450609 TTGGTAGCGAAGGTCTTGAC 57.549 50.000 0.00 0.00 40.68 3.18
1973 2241 7.326789 CGTGCTGTTGACAAATATGAAAATTCT 59.673 33.333 0.00 0.00 0.00 2.40
1975 2243 9.545105 TGCTGTTGACAAATATGAAAATTCTTT 57.455 25.926 0.00 0.00 0.00 2.52
2056 2325 6.810911 ACATGTAAACTTGGCAATGTTACAA 58.189 32.000 26.36 16.54 0.00 2.41
2070 2339 7.145323 GCAATGTTACAAGGATGTGTAAAGTT 58.855 34.615 0.00 0.00 43.67 2.66
2083 2352 7.094549 GGATGTGTAAAGTTTGCCATTGTACTA 60.095 37.037 0.00 0.00 0.00 1.82
2104 2373 4.568152 AATGTGAGTACAAAGTGCAACC 57.432 40.909 0.00 0.00 40.84 3.77
2111 2380 6.019881 GTGAGTACAAAGTGCAACCAAAAATC 60.020 38.462 0.00 0.00 37.80 2.17
2113 2382 6.639563 AGTACAAAGTGCAACCAAAAATCTT 58.360 32.000 0.00 0.00 37.80 2.40
2117 2386 7.918643 ACAAAGTGCAACCAAAAATCTTAATG 58.081 30.769 0.00 0.00 37.80 1.90
2127 2396 7.972301 ACCAAAAATCTTAATGGGATGTTCAA 58.028 30.769 0.00 0.00 37.26 2.69
2139 2408 8.776376 AATGGGATGTTCAATTATGACAAAAC 57.224 30.769 0.00 0.00 34.61 2.43
2157 2426 8.912988 TGACAAAACTTCATATGGTCTTTCTTT 58.087 29.630 2.13 0.00 0.00 2.52
2182 2451 6.938596 TCATATTTCATATGTTGCTCCCAGAG 59.061 38.462 1.90 0.00 42.49 3.35
2183 2452 4.842531 TTTCATATGTTGCTCCCAGAGA 57.157 40.909 1.90 0.00 0.00 3.10
2185 2454 4.142609 TCATATGTTGCTCCCAGAGAAC 57.857 45.455 1.90 0.00 0.00 3.01
2186 2455 3.519107 TCATATGTTGCTCCCAGAGAACA 59.481 43.478 1.90 10.11 35.74 3.18
2188 2457 2.189594 TGTTGCTCCCAGAGAACATG 57.810 50.000 0.00 0.00 30.82 3.21
2189 2458 1.421268 TGTTGCTCCCAGAGAACATGT 59.579 47.619 0.00 0.00 30.82 3.21
2190 2459 2.079925 GTTGCTCCCAGAGAACATGTC 58.920 52.381 0.00 0.00 0.00 3.06
2215 2484 5.662657 TGGAGACACAATATCCTTGATCTGA 59.337 40.000 0.00 0.00 39.69 3.27
2249 2525 7.595819 TGGGTTGAGAAAACTGAAACATATT 57.404 32.000 0.00 0.00 0.00 1.28
2263 2539 5.067023 TGAAACATATTGAACACAGTGCACA 59.933 36.000 21.04 0.00 0.00 4.57
2264 2540 4.488126 ACATATTGAACACAGTGCACAC 57.512 40.909 21.04 3.64 0.00 3.82
2275 2551 2.158534 ACAGTGCACACCCCAAATAGAA 60.159 45.455 21.04 0.00 0.00 2.10
2278 2554 2.890945 GTGCACACCCCAAATAGAAACT 59.109 45.455 13.17 0.00 0.00 2.66
2284 2560 6.345298 CACACCCCAAATAGAAACTTTTTGT 58.655 36.000 11.40 0.00 33.02 2.83
2323 2599 8.694540 TCATTCTTCAGATTTCACAAAAGGAAA 58.305 29.630 0.00 0.00 38.49 3.13
2377 2653 3.251479 TCACGAATAGCACATCAGCTT 57.749 42.857 0.00 0.00 43.70 3.74
2384 2660 0.036448 AGCACATCAGCTTGAGCAGT 59.964 50.000 9.94 0.00 43.70 4.40
2391 2667 0.040336 CAGCTTGAGCAGTGCAACAG 60.040 55.000 19.20 10.31 45.16 3.16
2392 2668 0.465097 AGCTTGAGCAGTGCAACAGT 60.465 50.000 19.20 0.00 45.16 3.55
2395 2671 2.033299 GCTTGAGCAGTGCAACAGTAAA 59.967 45.455 19.20 1.52 41.43 2.01
2398 2674 2.030893 TGAGCAGTGCAACAGTAAATGC 60.031 45.455 19.20 0.00 41.43 3.56
2400 2676 2.227388 AGCAGTGCAACAGTAAATGCTC 59.773 45.455 19.20 0.00 42.97 4.26
2401 2677 2.669391 GCAGTGCAACAGTAAATGCTCC 60.669 50.000 11.09 0.00 42.97 4.70
2409 2685 6.828273 TGCAACAGTAAATGCTCCATACTAAT 59.172 34.615 0.00 0.00 42.97 1.73
2411 2687 7.520614 GCAACAGTAAATGCTCCATACTAATCC 60.521 40.741 0.00 0.00 39.46 3.01
2413 2689 6.183360 ACAGTAAATGCTCCATACTAATCCGT 60.183 38.462 0.00 0.00 0.00 4.69
2450 2726 5.123936 AGAAACAGGAGGAACACTAACAAC 58.876 41.667 0.00 0.00 0.00 3.32
2452 2728 3.805207 ACAGGAGGAACACTAACAACAC 58.195 45.455 0.00 0.00 0.00 3.32
2453 2729 3.454812 ACAGGAGGAACACTAACAACACT 59.545 43.478 0.00 0.00 0.00 3.55
2481 2757 3.583383 GCATCCGCTTCTGCTGTT 58.417 55.556 0.00 0.00 35.49 3.16
2483 2759 1.712081 CATCCGCTTCTGCTGTTCG 59.288 57.895 0.00 0.00 36.97 3.95
2486 2762 0.315886 TCCGCTTCTGCTGTTCGTTA 59.684 50.000 0.00 0.00 36.97 3.18
2494 2770 3.997762 TCTGCTGTTCGTTAGCCTTTTA 58.002 40.909 0.00 0.00 40.42 1.52
2502 2778 5.464389 TGTTCGTTAGCCTTTTACTTGAGAC 59.536 40.000 0.00 0.00 0.00 3.36
2518 2794 0.827925 AGACGGGCTTCAGTCTGACA 60.828 55.000 10.88 0.00 45.03 3.58
2519 2795 0.247736 GACGGGCTTCAGTCTGACAT 59.752 55.000 10.88 0.00 34.74 3.06
2521 2797 1.478510 ACGGGCTTCAGTCTGACATAG 59.521 52.381 10.88 0.00 0.00 2.23
2531 2807 5.482908 TCAGTCTGACATAGCTTTTCTTCC 58.517 41.667 10.88 0.00 0.00 3.46
2560 2836 1.942677 TTTCGTTCCTTCGTCTTGCA 58.057 45.000 0.00 0.00 0.00 4.08
2586 2862 8.980596 ACAATGCATCCCTCAAAGAAATATTAA 58.019 29.630 0.00 0.00 0.00 1.40
2620 2896 2.762327 CCTCAATCCCCATTTCAAGGTG 59.238 50.000 0.00 0.00 0.00 4.00
2621 2897 3.434309 CTCAATCCCCATTTCAAGGTGT 58.566 45.455 0.00 0.00 0.00 4.16
2630 2906 0.375454 TTTCAAGGTGTGCGTTGACG 59.625 50.000 0.00 0.00 45.50 4.35
2655 2931 3.453679 GCCGAGCGTTCTCCCTCT 61.454 66.667 0.00 0.00 35.94 3.69
2708 2984 5.220557 CCAAAAGTTGGCAAGAAAGTTTG 57.779 39.130 0.00 7.04 45.17 2.93
2714 2990 3.974222 GCAAGAAAGTTTGCCAGCT 57.026 47.368 0.00 0.00 45.93 4.24
2716 2992 3.582714 GCAAGAAAGTTTGCCAGCTAT 57.417 42.857 0.00 0.00 45.93 2.97
2717 2993 4.701956 GCAAGAAAGTTTGCCAGCTATA 57.298 40.909 0.00 0.00 45.93 1.31
2718 2994 5.254339 GCAAGAAAGTTTGCCAGCTATAT 57.746 39.130 0.00 0.00 45.93 0.86
2719 2995 5.039333 GCAAGAAAGTTTGCCAGCTATATG 58.961 41.667 0.00 0.00 45.93 1.78
2720 2996 5.163622 GCAAGAAAGTTTGCCAGCTATATGA 60.164 40.000 0.00 0.00 45.93 2.15
2721 2997 6.493116 CAAGAAAGTTTGCCAGCTATATGAG 58.507 40.000 0.00 0.00 0.00 2.90
2722 2998 5.128919 AGAAAGTTTGCCAGCTATATGAGG 58.871 41.667 0.00 0.00 0.00 3.86
2723 2999 3.498774 AGTTTGCCAGCTATATGAGGG 57.501 47.619 0.00 0.00 0.00 4.30
2724 3000 3.048600 AGTTTGCCAGCTATATGAGGGA 58.951 45.455 0.00 0.00 0.00 4.20
2725 3001 3.072184 AGTTTGCCAGCTATATGAGGGAG 59.928 47.826 0.00 0.00 0.00 4.30
2726 3002 2.702270 TGCCAGCTATATGAGGGAGA 57.298 50.000 0.00 0.00 0.00 3.71
2727 3003 2.533916 TGCCAGCTATATGAGGGAGAG 58.466 52.381 0.00 0.00 0.00 3.20
2728 3004 2.110721 TGCCAGCTATATGAGGGAGAGA 59.889 50.000 0.00 0.00 0.00 3.10
2729 3005 3.245911 TGCCAGCTATATGAGGGAGAGAT 60.246 47.826 0.00 0.00 0.00 2.75
2730 3006 4.017130 TGCCAGCTATATGAGGGAGAGATA 60.017 45.833 0.00 0.00 0.00 1.98
2731 3007 4.584325 GCCAGCTATATGAGGGAGAGATAG 59.416 50.000 0.00 0.00 0.00 2.08
2732 3008 5.633615 GCCAGCTATATGAGGGAGAGATAGA 60.634 48.000 0.00 0.00 0.00 1.98
2733 3009 6.613699 CCAGCTATATGAGGGAGAGATAGAT 58.386 44.000 0.00 0.00 0.00 1.98
2734 3010 6.716628 CCAGCTATATGAGGGAGAGATAGATC 59.283 46.154 0.00 0.00 0.00 2.75
2735 3011 6.716628 CAGCTATATGAGGGAGAGATAGATCC 59.283 46.154 0.00 0.00 34.64 3.36
2736 3012 6.392543 AGCTATATGAGGGAGAGATAGATCCA 59.607 42.308 0.00 0.00 37.33 3.41
2737 3013 6.716628 GCTATATGAGGGAGAGATAGATCCAG 59.283 46.154 0.00 0.00 37.33 3.86
2738 3014 3.168035 TGAGGGAGAGATAGATCCAGC 57.832 52.381 0.00 0.00 37.33 4.85
2739 3015 2.448577 TGAGGGAGAGATAGATCCAGCA 59.551 50.000 0.00 0.00 37.33 4.41
2740 3016 3.116977 TGAGGGAGAGATAGATCCAGCAA 60.117 47.826 0.00 0.00 37.33 3.91
2741 3017 3.509442 AGGGAGAGATAGATCCAGCAAG 58.491 50.000 0.00 0.00 37.33 4.01
2742 3018 3.141838 AGGGAGAGATAGATCCAGCAAGA 59.858 47.826 0.00 0.00 37.33 3.02
2743 3019 3.900601 GGGAGAGATAGATCCAGCAAGAA 59.099 47.826 0.00 0.00 37.33 2.52
2744 3020 4.262420 GGGAGAGATAGATCCAGCAAGAAC 60.262 50.000 0.00 0.00 37.33 3.01
2745 3021 4.262420 GGAGAGATAGATCCAGCAAGAACC 60.262 50.000 0.00 0.00 35.54 3.62
2746 3022 4.293494 AGAGATAGATCCAGCAAGAACCA 58.707 43.478 0.00 0.00 0.00 3.67
2747 3023 4.718774 AGAGATAGATCCAGCAAGAACCAA 59.281 41.667 0.00 0.00 0.00 3.67
2748 3024 5.033589 AGATAGATCCAGCAAGAACCAAG 57.966 43.478 0.00 0.00 0.00 3.61
2749 3025 4.718774 AGATAGATCCAGCAAGAACCAAGA 59.281 41.667 0.00 0.00 0.00 3.02
2750 3026 3.795688 AGATCCAGCAAGAACCAAGAA 57.204 42.857 0.00 0.00 0.00 2.52
2751 3027 3.683802 AGATCCAGCAAGAACCAAGAAG 58.316 45.455 0.00 0.00 0.00 2.85
2752 3028 3.328931 AGATCCAGCAAGAACCAAGAAGA 59.671 43.478 0.00 0.00 0.00 2.87
2753 3029 3.576078 TCCAGCAAGAACCAAGAAGAA 57.424 42.857 0.00 0.00 0.00 2.52
2754 3030 3.480470 TCCAGCAAGAACCAAGAAGAAG 58.520 45.455 0.00 0.00 0.00 2.85
2755 3031 3.136443 TCCAGCAAGAACCAAGAAGAAGA 59.864 43.478 0.00 0.00 0.00 2.87
2756 3032 4.077822 CCAGCAAGAACCAAGAAGAAGAT 58.922 43.478 0.00 0.00 0.00 2.40
2757 3033 5.013079 TCCAGCAAGAACCAAGAAGAAGATA 59.987 40.000 0.00 0.00 0.00 1.98
2758 3034 5.353678 CCAGCAAGAACCAAGAAGAAGATAG 59.646 44.000 0.00 0.00 0.00 2.08
2759 3035 6.169094 CAGCAAGAACCAAGAAGAAGATAGA 58.831 40.000 0.00 0.00 0.00 1.98
2760 3036 6.822676 CAGCAAGAACCAAGAAGAAGATAGAT 59.177 38.462 0.00 0.00 0.00 1.98
2761 3037 7.336427 CAGCAAGAACCAAGAAGAAGATAGATT 59.664 37.037 0.00 0.00 0.00 2.40
2762 3038 8.543774 AGCAAGAACCAAGAAGAAGATAGATTA 58.456 33.333 0.00 0.00 0.00 1.75
2763 3039 9.167311 GCAAGAACCAAGAAGAAGATAGATTAA 57.833 33.333 0.00 0.00 0.00 1.40
2767 3043 9.974750 GAACCAAGAAGAAGATAGATTAAAACG 57.025 33.333 0.00 0.00 0.00 3.60
2768 3044 9.720769 AACCAAGAAGAAGATAGATTAAAACGA 57.279 29.630 0.00 0.00 0.00 3.85
2769 3045 9.720769 ACCAAGAAGAAGATAGATTAAAACGAA 57.279 29.630 0.00 0.00 0.00 3.85
2773 3049 9.606631 AGAAGAAGATAGATTAAAACGAATGCT 57.393 29.630 0.00 0.00 0.00 3.79
2775 3051 9.994432 AAGAAGATAGATTAAAACGAATGCTTG 57.006 29.630 0.00 0.00 0.00 4.01
2776 3052 8.125448 AGAAGATAGATTAAAACGAATGCTTGC 58.875 33.333 0.00 0.00 0.00 4.01
2777 3053 6.729187 AGATAGATTAAAACGAATGCTTGCC 58.271 36.000 0.00 0.00 0.00 4.52
2778 3054 4.110036 AGATTAAAACGAATGCTTGCCC 57.890 40.909 0.00 0.00 0.00 5.36
2779 3055 3.509575 AGATTAAAACGAATGCTTGCCCA 59.490 39.130 0.00 0.00 0.00 5.36
2780 3056 3.735237 TTAAAACGAATGCTTGCCCAA 57.265 38.095 0.00 0.00 0.00 4.12
2781 3057 2.153366 AAAACGAATGCTTGCCCAAG 57.847 45.000 3.70 3.70 41.24 3.61
2782 3058 1.039856 AAACGAATGCTTGCCCAAGT 58.960 45.000 9.53 0.00 40.45 3.16
2783 3059 1.039856 AACGAATGCTTGCCCAAGTT 58.960 45.000 9.53 0.00 40.45 2.66
2784 3060 1.039856 ACGAATGCTTGCCCAAGTTT 58.960 45.000 9.53 4.46 40.45 2.66
2785 3061 1.412343 ACGAATGCTTGCCCAAGTTTT 59.588 42.857 9.53 4.16 40.45 2.43
2786 3062 2.158971 ACGAATGCTTGCCCAAGTTTTT 60.159 40.909 9.53 2.02 40.45 1.94
2805 3081 4.911514 TTTTGGCAGTTCAGAAACCTAC 57.088 40.909 0.00 0.00 35.92 3.18
2806 3082 2.163818 TGGCAGTTCAGAAACCTACG 57.836 50.000 0.00 0.00 35.92 3.51
2807 3083 1.414919 TGGCAGTTCAGAAACCTACGT 59.585 47.619 0.00 0.00 35.92 3.57
2808 3084 2.067013 GGCAGTTCAGAAACCTACGTC 58.933 52.381 0.00 0.00 35.92 4.34
2809 3085 2.067013 GCAGTTCAGAAACCTACGTCC 58.933 52.381 0.00 0.00 35.92 4.79
2810 3086 2.547218 GCAGTTCAGAAACCTACGTCCA 60.547 50.000 0.00 0.00 35.92 4.02
2811 3087 3.318017 CAGTTCAGAAACCTACGTCCAG 58.682 50.000 0.00 0.00 35.92 3.86
2812 3088 2.299297 AGTTCAGAAACCTACGTCCAGG 59.701 50.000 2.68 2.68 41.87 4.45
2813 3089 1.263356 TCAGAAACCTACGTCCAGGG 58.737 55.000 9.18 2.71 40.29 4.45
2814 3090 0.974383 CAGAAACCTACGTCCAGGGT 59.026 55.000 9.18 0.00 40.29 4.34
2816 3092 2.564062 CAGAAACCTACGTCCAGGGTTA 59.436 50.000 7.65 0.00 45.92 2.85
2817 3093 2.830321 AGAAACCTACGTCCAGGGTTAG 59.170 50.000 7.65 0.00 45.92 2.34
2818 3094 0.900421 AACCTACGTCCAGGGTTAGC 59.100 55.000 9.18 0.00 40.96 3.09
2819 3095 1.318158 ACCTACGTCCAGGGTTAGCG 61.318 60.000 9.18 0.00 40.29 4.26
2820 3096 1.318158 CCTACGTCCAGGGTTAGCGT 61.318 60.000 0.00 0.00 39.23 5.07
2821 3097 0.529378 CTACGTCCAGGGTTAGCGTT 59.471 55.000 0.00 0.00 37.05 4.84
2822 3098 0.244450 TACGTCCAGGGTTAGCGTTG 59.756 55.000 0.00 0.00 37.05 4.10
2823 3099 1.740296 CGTCCAGGGTTAGCGTTGG 60.740 63.158 0.00 0.00 0.00 3.77
2824 3100 1.373812 GTCCAGGGTTAGCGTTGGT 59.626 57.895 4.09 0.00 32.51 3.67
2825 3101 0.672711 GTCCAGGGTTAGCGTTGGTC 60.673 60.000 4.09 0.00 32.51 4.02
2826 3102 1.376812 CCAGGGTTAGCGTTGGTCC 60.377 63.158 0.00 0.00 0.00 4.46
2827 3103 1.373435 CAGGGTTAGCGTTGGTCCA 59.627 57.895 0.00 0.00 0.00 4.02
2828 3104 0.673644 CAGGGTTAGCGTTGGTCCAG 60.674 60.000 0.00 0.00 0.00 3.86
2829 3105 1.376812 GGGTTAGCGTTGGTCCAGG 60.377 63.158 0.00 0.00 0.00 4.45
2830 3106 1.675219 GGTTAGCGTTGGTCCAGGA 59.325 57.895 0.00 0.00 0.00 3.86
2831 3107 0.391263 GGTTAGCGTTGGTCCAGGAG 60.391 60.000 0.00 0.00 0.00 3.69
2832 3108 0.606604 GTTAGCGTTGGTCCAGGAGA 59.393 55.000 0.00 0.00 0.00 3.71
2833 3109 1.207329 GTTAGCGTTGGTCCAGGAGAT 59.793 52.381 0.00 0.00 0.00 2.75
2834 3110 1.112113 TAGCGTTGGTCCAGGAGATC 58.888 55.000 0.00 0.00 0.00 2.75
2835 3111 1.153349 GCGTTGGTCCAGGAGATCC 60.153 63.158 0.00 0.00 0.00 3.36
2836 3112 1.899437 GCGTTGGTCCAGGAGATCCA 61.899 60.000 0.92 0.00 38.89 3.41
2837 3113 0.833287 CGTTGGTCCAGGAGATCCAT 59.167 55.000 0.92 0.00 38.89 3.41
2838 3114 1.202580 CGTTGGTCCAGGAGATCCATC 60.203 57.143 0.92 0.00 38.89 3.51
2839 3115 2.122768 GTTGGTCCAGGAGATCCATCT 58.877 52.381 0.92 0.00 40.50 2.90
2846 3122 4.206697 GAGATCCATCTCGCCCCT 57.793 61.111 0.76 0.00 43.29 4.79
2847 3123 2.446512 GAGATCCATCTCGCCCCTT 58.553 57.895 0.76 0.00 43.29 3.95
2848 3124 0.761802 GAGATCCATCTCGCCCCTTT 59.238 55.000 0.76 0.00 43.29 3.11
2849 3125 0.761802 AGATCCATCTCGCCCCTTTC 59.238 55.000 0.00 0.00 29.30 2.62
2850 3126 0.761802 GATCCATCTCGCCCCTTTCT 59.238 55.000 0.00 0.00 0.00 2.52
2851 3127 0.761802 ATCCATCTCGCCCCTTTCTC 59.238 55.000 0.00 0.00 0.00 2.87
2852 3128 0.325671 TCCATCTCGCCCCTTTCTCT 60.326 55.000 0.00 0.00 0.00 3.10
2853 3129 0.543749 CCATCTCGCCCCTTTCTCTT 59.456 55.000 0.00 0.00 0.00 2.85
2854 3130 1.065126 CCATCTCGCCCCTTTCTCTTT 60.065 52.381 0.00 0.00 0.00 2.52
2855 3131 2.012673 CATCTCGCCCCTTTCTCTTTG 58.987 52.381 0.00 0.00 0.00 2.77
2856 3132 0.321653 TCTCGCCCCTTTCTCTTTGC 60.322 55.000 0.00 0.00 0.00 3.68
2857 3133 0.606401 CTCGCCCCTTTCTCTTTGCA 60.606 55.000 0.00 0.00 0.00 4.08
2858 3134 0.889186 TCGCCCCTTTCTCTTTGCAC 60.889 55.000 0.00 0.00 0.00 4.57
2859 3135 1.866853 CGCCCCTTTCTCTTTGCACC 61.867 60.000 0.00 0.00 0.00 5.01
2860 3136 0.827507 GCCCCTTTCTCTTTGCACCA 60.828 55.000 0.00 0.00 0.00 4.17
2861 3137 1.251251 CCCCTTTCTCTTTGCACCAG 58.749 55.000 0.00 0.00 0.00 4.00
2862 3138 1.479389 CCCCTTTCTCTTTGCACCAGT 60.479 52.381 0.00 0.00 0.00 4.00
2863 3139 2.224769 CCCCTTTCTCTTTGCACCAGTA 60.225 50.000 0.00 0.00 0.00 2.74
2864 3140 3.486383 CCCTTTCTCTTTGCACCAGTAA 58.514 45.455 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.070134 TCCTTGAACACCCACTCGAAG 59.930 52.381 0.00 0.00 0.00 3.79
9 10 2.185004 ATTCCTTGAACACCCACTCG 57.815 50.000 0.00 0.00 0.00 4.18
30 31 1.221840 CCCTCCCATCAAGGACACG 59.778 63.158 0.00 0.00 41.22 4.49
32 33 1.289160 CTTCCCTCCCATCAAGGACA 58.711 55.000 0.00 0.00 41.22 4.02
33 34 0.548510 CCTTCCCTCCCATCAAGGAC 59.451 60.000 0.00 0.00 41.22 3.85
36 37 0.182299 GAGCCTTCCCTCCCATCAAG 59.818 60.000 0.00 0.00 0.00 3.02
66 67 8.514330 AATATGCTTTCAAATTACCCGTTAGA 57.486 30.769 0.00 0.00 0.00 2.10
69 70 7.404671 AGAATATGCTTTCAAATTACCCGTT 57.595 32.000 0.00 0.00 0.00 4.44
81 82 6.030228 GGCAGTGTAACAAGAATATGCTTTC 58.970 40.000 0.00 0.00 41.43 2.62
88 89 7.549134 CAGTAGAATGGCAGTGTAACAAGAATA 59.451 37.037 0.00 0.00 41.43 1.75
89 90 6.372659 CAGTAGAATGGCAGTGTAACAAGAAT 59.627 38.462 0.00 0.00 41.43 2.40
90 91 5.700832 CAGTAGAATGGCAGTGTAACAAGAA 59.299 40.000 0.00 0.00 41.43 2.52
91 92 5.011635 TCAGTAGAATGGCAGTGTAACAAGA 59.988 40.000 0.00 0.00 41.43 3.02
93 94 5.222079 TCAGTAGAATGGCAGTGTAACAA 57.778 39.130 0.00 0.00 41.43 2.83
94 95 4.882842 TCAGTAGAATGGCAGTGTAACA 57.117 40.909 0.00 0.00 41.43 2.41
95 96 5.120830 CAGTTCAGTAGAATGGCAGTGTAAC 59.879 44.000 0.00 0.00 35.92 2.50
96 97 5.237815 CAGTTCAGTAGAATGGCAGTGTAA 58.762 41.667 0.00 0.00 35.92 2.41
98 99 3.668447 CAGTTCAGTAGAATGGCAGTGT 58.332 45.455 0.00 0.00 35.92 3.55
99 100 2.417933 GCAGTTCAGTAGAATGGCAGTG 59.582 50.000 0.00 0.00 36.36 3.66
101 102 2.983229 AGCAGTTCAGTAGAATGGCAG 58.017 47.619 0.00 0.00 37.81 4.85
102 103 4.760530 ATAGCAGTTCAGTAGAATGGCA 57.239 40.909 0.00 0.00 37.81 4.92
103 104 6.696411 AGATATAGCAGTTCAGTAGAATGGC 58.304 40.000 0.00 0.00 35.92 4.40
104 105 7.319646 GGAGATATAGCAGTTCAGTAGAATGG 58.680 42.308 0.00 0.00 35.92 3.16
105 106 7.178274 AGGGAGATATAGCAGTTCAGTAGAATG 59.822 40.741 0.00 0.00 35.92 2.67
107 108 6.615617 AGGGAGATATAGCAGTTCAGTAGAA 58.384 40.000 0.00 0.00 0.00 2.10
109 110 6.943146 TGTAGGGAGATATAGCAGTTCAGTAG 59.057 42.308 0.00 0.00 0.00 2.57
110 111 6.849151 TGTAGGGAGATATAGCAGTTCAGTA 58.151 40.000 0.00 0.00 0.00 2.74
111 112 5.706447 TGTAGGGAGATATAGCAGTTCAGT 58.294 41.667 0.00 0.00 0.00 3.41
112 113 6.849085 ATGTAGGGAGATATAGCAGTTCAG 57.151 41.667 0.00 0.00 0.00 3.02
117 118 6.191315 AGGTGTATGTAGGGAGATATAGCAG 58.809 44.000 0.00 0.00 0.00 4.24
119 120 6.095720 GTGAGGTGTATGTAGGGAGATATAGC 59.904 46.154 0.00 0.00 0.00 2.97
124 125 4.079154 TCAGTGAGGTGTATGTAGGGAGAT 60.079 45.833 0.00 0.00 0.00 2.75
129 130 4.098654 CCTTCTCAGTGAGGTGTATGTAGG 59.901 50.000 19.99 9.72 0.00 3.18
130 131 4.707448 ACCTTCTCAGTGAGGTGTATGTAG 59.293 45.833 19.99 5.26 32.77 2.74
132 133 3.511477 ACCTTCTCAGTGAGGTGTATGT 58.489 45.455 19.99 6.58 32.77 2.29
136 137 2.088104 TGACCTTCTCAGTGAGGTGT 57.912 50.000 19.99 13.85 34.38 4.16
137 138 3.692257 AATGACCTTCTCAGTGAGGTG 57.308 47.619 19.99 12.32 34.38 4.00
138 139 3.906846 AGAAATGACCTTCTCAGTGAGGT 59.093 43.478 19.99 11.20 37.37 3.85
167 168 1.865788 GCACGGGCTTGATCTGCAAA 61.866 55.000 0.00 0.00 35.74 3.68
169 170 2.747460 GCACGGGCTTGATCTGCA 60.747 61.111 0.00 0.00 36.96 4.41
175 176 1.675310 CTCCATTGCACGGGCTTGA 60.675 57.895 12.74 0.57 41.91 3.02
195 196 1.981495 GCCACTGGGAAGATATAGCCT 59.019 52.381 0.00 0.00 35.59 4.58
204 205 1.207791 AGTATCAGGCCACTGGGAAG 58.792 55.000 5.01 0.00 44.99 3.46
251 252 3.636764 AGGTGTTCCCTTGCTTTTTGTAG 59.363 43.478 0.00 0.00 42.73 2.74
253 254 2.466846 AGGTGTTCCCTTGCTTTTTGT 58.533 42.857 0.00 0.00 42.73 2.83
271 272 7.718334 ATTTTTGGAATAAACAGGTCCTAGG 57.282 36.000 0.82 0.82 32.28 3.02
277 278 8.706322 AGTCACTATTTTTGGAATAAACAGGT 57.294 30.769 0.00 0.00 0.00 4.00
278 279 9.626045 GAAGTCACTATTTTTGGAATAAACAGG 57.374 33.333 0.00 0.00 0.00 4.00
289 290 6.642950 ACTCGTCTCTGAAGTCACTATTTTTG 59.357 38.462 0.00 0.00 0.00 2.44
295 296 4.820173 TGAAACTCGTCTCTGAAGTCACTA 59.180 41.667 0.00 0.00 0.00 2.74
301 302 3.183373 GCTTGTGAAACTCGTCTCTGAAG 59.817 47.826 0.00 0.00 38.04 3.02
322 323 6.811253 ACTGTCACTATATACTCTAGCAGC 57.189 41.667 0.00 0.00 0.00 5.25
325 326 8.028354 TCGTCTACTGTCACTATATACTCTAGC 58.972 40.741 0.00 0.00 0.00 3.42
328 329 7.954835 ACTCGTCTACTGTCACTATATACTCT 58.045 38.462 0.00 0.00 0.00 3.24
337 338 2.763933 TCGAACTCGTCTACTGTCACT 58.236 47.619 0.00 0.00 40.80 3.41
340 341 3.907194 CAGTTTCGAACTCGTCTACTGTC 59.093 47.826 13.32 0.00 40.46 3.51
349 350 0.443869 CCCATGCAGTTTCGAACTCG 59.556 55.000 0.00 0.00 40.46 4.18
355 356 1.444895 GCAAGCCCATGCAGTTTCG 60.445 57.895 0.00 0.00 45.70 3.46
376 377 9.300681 TGGTCTTCAAGTTGATATTTCTCAATT 57.699 29.630 6.36 0.00 37.47 2.32
403 404 4.343814 TCGTATATTTGAGTGAGCCATGGA 59.656 41.667 18.40 0.00 0.00 3.41
424 425 2.487762 TGCCCATTTTGCTCTAACTTCG 59.512 45.455 0.00 0.00 0.00 3.79
463 464 3.648067 TGGTCATCCTTTCACAGAAGACT 59.352 43.478 0.00 0.00 34.23 3.24
466 467 2.746362 GCTGGTCATCCTTTCACAGAAG 59.254 50.000 0.00 0.00 34.23 2.85
472 473 1.142667 TGTGTGCTGGTCATCCTTTCA 59.857 47.619 0.00 0.00 34.23 2.69
474 475 1.956477 GTTGTGTGCTGGTCATCCTTT 59.044 47.619 0.00 0.00 34.23 3.11
484 485 1.003545 CTCTCCAAACGTTGTGTGCTG 60.004 52.381 0.00 0.00 0.00 4.41
498 499 1.608055 CATGTGGTTTGCACTCTCCA 58.392 50.000 0.00 0.00 0.00 3.86
499 500 0.242017 GCATGTGGTTTGCACTCTCC 59.758 55.000 0.00 0.00 39.90 3.71
535 536 0.821517 TGTTCATAGACGATGCCGGT 59.178 50.000 1.90 0.00 40.78 5.28
648 649 9.185192 GGTTAAAAAGAATGCTATGTATGATGC 57.815 33.333 0.00 0.00 0.00 3.91
665 666 8.816640 ACATATGCAGTTTCAAGGTTAAAAAG 57.183 30.769 1.58 0.00 0.00 2.27
698 701 5.448632 CGGTGGCCAATAAGTTTCATAAGAC 60.449 44.000 7.24 0.00 0.00 3.01
711 715 1.249407 GAAAACACCGGTGGCCAATA 58.751 50.000 36.47 0.00 34.19 1.90
757 761 2.138320 CGCATGGTATTCTAGTGGCAG 58.862 52.381 0.00 0.00 0.00 4.85
785 789 4.355437 CTCATACATAGCTGCGGTATAGC 58.645 47.826 12.09 0.00 41.43 2.97
819 823 5.999205 ATGACCCTGACAATTAAATTGCA 57.001 34.783 0.00 0.00 43.98 4.08
828 832 6.061022 TGTAACACATATGACCCTGACAAT 57.939 37.500 10.38 0.00 0.00 2.71
886 890 5.069119 TCTCTGCATAGATGTGGTTAACGAT 59.931 40.000 0.00 0.00 31.21 3.73
1081 1128 3.491964 CCGCCGGTTCTGATATTTAGTGA 60.492 47.826 1.90 0.00 0.00 3.41
1099 1146 0.321830 TAACAGCCCAAGTAACCGCC 60.322 55.000 0.00 0.00 0.00 6.13
1101 1148 2.172851 TGTAACAGCCCAAGTAACCG 57.827 50.000 0.00 0.00 0.00 4.44
1103 1150 7.780008 AAATTTTTGTAACAGCCCAAGTAAC 57.220 32.000 0.00 0.00 0.00 2.50
1163 1332 5.973651 TCTATGCTTGCAGAGTAATTTCG 57.026 39.130 15.46 0.00 0.00 3.46
1262 1529 2.844348 GTTGGATCTCCCTAACTCCCAA 59.156 50.000 0.00 0.00 35.38 4.12
1281 1548 6.541278 CCATCTCTTCATGATGTGTACATGTT 59.459 38.462 2.30 0.00 43.56 2.71
1315 1582 0.535780 CTGGCAGGTTCTCACAAGCA 60.536 55.000 6.61 0.00 0.00 3.91
1366 1633 1.498865 AAGTTGCGTCCTTCAGTGCG 61.499 55.000 0.00 0.00 0.00 5.34
1414 1681 2.695666 CCCCATCTGTACAATCTCGAGT 59.304 50.000 13.13 0.00 0.00 4.18
1528 1795 2.744202 CGCTGCCTTATCATGTAATCCC 59.256 50.000 0.00 0.00 0.00 3.85
1541 1808 4.711949 CACTGGAGCCGCTGCCTT 62.712 66.667 9.66 0.00 38.69 4.35
1558 1825 0.940126 CAGGCATATCTTGGTCGTGC 59.060 55.000 0.00 0.00 35.17 5.34
1561 1828 3.555956 GTGTAACAGGCATATCTTGGTCG 59.444 47.826 0.00 0.00 36.32 4.79
1697 1964 5.182487 TCTACACACAGAGCAAAACTTTGA 58.818 37.500 6.37 0.00 40.55 2.69
1712 1979 0.252103 TGACCCCTCCCTCTACACAC 60.252 60.000 0.00 0.00 0.00 3.82
1714 1981 2.769602 TATGACCCCTCCCTCTACAC 57.230 55.000 0.00 0.00 0.00 2.90
1806 2073 1.763770 CTCTTGTGGCCTTCCAGGT 59.236 57.895 3.32 0.00 44.48 4.00
1843 2110 1.135972 CATTGGAAGACGCCGAACAAG 60.136 52.381 0.00 0.00 0.00 3.16
1877 2144 0.829333 CTGTGGGCAGTGCTATCTCT 59.171 55.000 16.11 0.00 37.92 3.10
1895 2162 1.547372 GCCAGGCATGTCACAAATTCT 59.453 47.619 6.55 0.00 0.00 2.40
1906 2173 1.080093 CAAGCACAAGCCAGGCATG 60.080 57.895 15.80 15.56 43.56 4.06
1924 2191 3.562557 TCAAGACCTTCGCTACCAAAAAC 59.437 43.478 0.00 0.00 0.00 2.43
1931 2199 1.337821 CACGTCAAGACCTTCGCTAC 58.662 55.000 0.00 0.00 0.00 3.58
1944 2212 4.061596 TCATATTTGTCAACAGCACGTCA 58.938 39.130 0.00 0.00 0.00 4.35
1946 2214 5.431420 TTTCATATTTGTCAACAGCACGT 57.569 34.783 0.00 0.00 0.00 4.49
1947 2215 6.932901 ATTTTCATATTTGTCAACAGCACG 57.067 33.333 0.00 0.00 0.00 5.34
2000 2269 2.825532 ACATGTTCACTAATTGGCCACC 59.174 45.455 3.88 0.00 0.00 4.61
2056 2325 4.588528 ACAATGGCAAACTTTACACATCCT 59.411 37.500 0.00 0.00 0.00 3.24
2083 2352 3.951037 TGGTTGCACTTTGTACTCACATT 59.049 39.130 0.00 0.00 33.76 2.71
2113 2382 9.868277 GTTTTGTCATAATTGAACATCCCATTA 57.132 29.630 0.00 0.00 32.48 1.90
2117 2386 8.087750 TGAAGTTTTGTCATAATTGAACATCCC 58.912 33.333 0.00 0.00 32.48 3.85
2161 2430 5.378230 TCTCTGGGAGCAACATATGAAAT 57.622 39.130 10.38 0.00 0.00 2.17
2188 2457 5.344743 TCAAGGATATTGTGTCTCCAGAC 57.655 43.478 0.00 0.00 44.97 3.51
2189 2458 5.901853 AGATCAAGGATATTGTGTCTCCAGA 59.098 40.000 0.00 0.00 0.00 3.86
2190 2459 5.990386 CAGATCAAGGATATTGTGTCTCCAG 59.010 44.000 0.00 0.00 0.00 3.86
2215 2484 5.363580 AGTTTTCTCAACCCATTTCATGTGT 59.636 36.000 0.00 0.00 0.00 3.72
2249 2525 1.453015 GGGGTGTGCACTGTGTTCA 60.453 57.895 19.41 6.33 0.00 3.18
2263 2539 7.189079 TCAACAAAAAGTTTCTATTTGGGGT 57.811 32.000 0.00 0.00 38.74 4.95
2264 2540 7.550906 TGTTCAACAAAAAGTTTCTATTTGGGG 59.449 33.333 0.00 0.00 38.74 4.96
2311 2587 2.817258 CCGCTACCATTTCCTTTTGTGA 59.183 45.455 0.00 0.00 0.00 3.58
2323 2599 3.578716 ACTATTGTGCTATCCGCTACCAT 59.421 43.478 0.00 0.00 40.11 3.55
2344 2620 8.225107 TGTGCTATTCGTGAACAATTTACTTAC 58.775 33.333 0.00 0.00 0.00 2.34
2348 2624 7.240674 TGATGTGCTATTCGTGAACAATTTAC 58.759 34.615 0.00 0.00 0.00 2.01
2364 2640 1.277273 ACTGCTCAAGCTGATGTGCTA 59.723 47.619 14.78 1.16 43.24 3.49
2377 2653 2.030893 GCATTTACTGTTGCACTGCTCA 60.031 45.455 1.98 1.39 38.72 4.26
2384 2660 4.588899 AGTATGGAGCATTTACTGTTGCA 58.411 39.130 5.81 0.00 40.49 4.08
2391 2667 7.148623 GCTTACGGATTAGTATGGAGCATTTAC 60.149 40.741 0.00 0.00 31.70 2.01
2392 2668 6.872020 GCTTACGGATTAGTATGGAGCATTTA 59.128 38.462 0.00 0.00 31.70 1.40
2395 2671 4.528596 AGCTTACGGATTAGTATGGAGCAT 59.471 41.667 0.00 0.00 33.02 3.79
2398 2674 4.686554 GCAAGCTTACGGATTAGTATGGAG 59.313 45.833 0.00 0.00 0.00 3.86
2400 2676 4.632153 AGCAAGCTTACGGATTAGTATGG 58.368 43.478 0.00 0.00 0.00 2.74
2401 2677 5.346281 GCTAGCAAGCTTACGGATTAGTATG 59.654 44.000 10.63 0.00 45.85 2.39
2450 2726 4.003519 GCGGATGCTTTTTAGTGTAGTG 57.996 45.455 0.00 0.00 38.39 2.74
2481 2757 4.232221 CGTCTCAAGTAAAAGGCTAACGA 58.768 43.478 0.00 0.00 0.00 3.85
2483 2759 3.683340 CCCGTCTCAAGTAAAAGGCTAAC 59.317 47.826 0.00 0.00 0.00 2.34
2486 2762 1.610886 GCCCGTCTCAAGTAAAAGGCT 60.611 52.381 0.00 0.00 36.22 4.58
2494 2770 0.318762 GACTGAAGCCCGTCTCAAGT 59.681 55.000 0.00 0.00 0.00 3.16
2502 2778 1.804372 GCTATGTCAGACTGAAGCCCG 60.804 57.143 14.28 2.13 0.00 6.13
2518 2794 4.582973 AAGGCTCTGGAAGAAAAGCTAT 57.417 40.909 0.00 0.00 46.34 2.97
2519 2795 5.700402 ATAAGGCTCTGGAAGAAAAGCTA 57.300 39.130 0.00 0.00 46.34 3.32
2521 2797 5.645624 GAAATAAGGCTCTGGAAGAAAAGC 58.354 41.667 0.00 0.00 46.34 3.51
2531 2807 3.307242 CGAAGGAACGAAATAAGGCTCTG 59.693 47.826 0.00 0.00 35.09 3.35
2560 2836 7.427989 AATATTTCTTTGAGGGATGCATTGT 57.572 32.000 0.00 0.00 0.00 2.71
2572 2848 8.506168 ACGAAGCTCCATTAATATTTCTTTGA 57.494 30.769 0.00 0.00 0.00 2.69
2630 2906 3.100862 GAACGCTCGGCTCAATGGC 62.101 63.158 0.00 0.00 37.94 4.40
2632 2908 1.424493 GGAGAACGCTCGGCTCAATG 61.424 60.000 13.46 0.00 42.25 2.82
2675 2951 0.517316 AACTTTTGGTCGATCTGCGC 59.483 50.000 0.00 0.00 40.61 6.09
2698 2974 5.591877 CCTCATATAGCTGGCAAACTTTCTT 59.408 40.000 0.00 0.00 0.00 2.52
2700 2976 4.276926 CCCTCATATAGCTGGCAAACTTTC 59.723 45.833 0.00 0.00 0.00 2.62
2701 2977 4.079787 TCCCTCATATAGCTGGCAAACTTT 60.080 41.667 0.00 0.00 0.00 2.66
2702 2978 3.459598 TCCCTCATATAGCTGGCAAACTT 59.540 43.478 0.00 0.00 0.00 2.66
2703 2979 3.048600 TCCCTCATATAGCTGGCAAACT 58.951 45.455 0.00 0.00 0.00 2.66
2704 2980 3.071602 TCTCCCTCATATAGCTGGCAAAC 59.928 47.826 0.00 0.00 0.00 2.93
2705 2981 3.317406 TCTCCCTCATATAGCTGGCAAA 58.683 45.455 0.00 0.00 0.00 3.68
2706 2982 2.902486 CTCTCCCTCATATAGCTGGCAA 59.098 50.000 0.00 0.00 0.00 4.52
2707 2983 2.110721 TCTCTCCCTCATATAGCTGGCA 59.889 50.000 0.00 0.00 0.00 4.92
2708 2984 2.813907 TCTCTCCCTCATATAGCTGGC 58.186 52.381 0.00 0.00 0.00 4.85
2709 2985 6.012337 TCTATCTCTCCCTCATATAGCTGG 57.988 45.833 0.00 0.00 0.00 4.85
2710 2986 6.716628 GGATCTATCTCTCCCTCATATAGCTG 59.283 46.154 0.00 0.00 0.00 4.24
2711 2987 6.392543 TGGATCTATCTCTCCCTCATATAGCT 59.607 42.308 0.00 0.00 0.00 3.32
2712 2988 6.609876 TGGATCTATCTCTCCCTCATATAGC 58.390 44.000 0.00 0.00 0.00 2.97
2713 2989 6.716628 GCTGGATCTATCTCTCCCTCATATAG 59.283 46.154 0.00 0.00 0.00 1.31
2714 2990 6.161170 TGCTGGATCTATCTCTCCCTCATATA 59.839 42.308 0.00 0.00 0.00 0.86
2715 2991 5.043507 TGCTGGATCTATCTCTCCCTCATAT 60.044 44.000 0.00 0.00 0.00 1.78
2716 2992 4.293368 TGCTGGATCTATCTCTCCCTCATA 59.707 45.833 0.00 0.00 0.00 2.15
2717 2993 3.077240 TGCTGGATCTATCTCTCCCTCAT 59.923 47.826 0.00 0.00 0.00 2.90
2718 2994 2.448577 TGCTGGATCTATCTCTCCCTCA 59.551 50.000 0.00 0.00 0.00 3.86
2719 2995 3.168035 TGCTGGATCTATCTCTCCCTC 57.832 52.381 0.00 0.00 0.00 4.30
2720 2996 3.141838 TCTTGCTGGATCTATCTCTCCCT 59.858 47.826 0.00 0.00 0.00 4.20
2721 2997 3.505386 TCTTGCTGGATCTATCTCTCCC 58.495 50.000 0.00 0.00 0.00 4.30
2722 2998 4.262420 GGTTCTTGCTGGATCTATCTCTCC 60.262 50.000 0.00 0.00 0.00 3.71
2723 2999 4.343526 TGGTTCTTGCTGGATCTATCTCTC 59.656 45.833 0.00 0.00 0.00 3.20
2724 3000 4.293494 TGGTTCTTGCTGGATCTATCTCT 58.707 43.478 0.00 0.00 0.00 3.10
2725 3001 4.679373 TGGTTCTTGCTGGATCTATCTC 57.321 45.455 0.00 0.00 0.00 2.75
2726 3002 4.718774 TCTTGGTTCTTGCTGGATCTATCT 59.281 41.667 0.00 0.00 0.00 1.98
2727 3003 5.028549 TCTTGGTTCTTGCTGGATCTATC 57.971 43.478 0.00 0.00 0.00 2.08
2728 3004 5.190528 TCTTCTTGGTTCTTGCTGGATCTAT 59.809 40.000 0.00 0.00 0.00 1.98
2729 3005 4.532126 TCTTCTTGGTTCTTGCTGGATCTA 59.468 41.667 0.00 0.00 0.00 1.98
2730 3006 3.328931 TCTTCTTGGTTCTTGCTGGATCT 59.671 43.478 0.00 0.00 0.00 2.75
2731 3007 3.679389 TCTTCTTGGTTCTTGCTGGATC 58.321 45.455 0.00 0.00 0.00 3.36
2732 3008 3.795688 TCTTCTTGGTTCTTGCTGGAT 57.204 42.857 0.00 0.00 0.00 3.41
2733 3009 3.136443 TCTTCTTCTTGGTTCTTGCTGGA 59.864 43.478 0.00 0.00 0.00 3.86
2734 3010 3.480470 TCTTCTTCTTGGTTCTTGCTGG 58.520 45.455 0.00 0.00 0.00 4.85
2735 3011 6.169094 TCTATCTTCTTCTTGGTTCTTGCTG 58.831 40.000 0.00 0.00 0.00 4.41
2736 3012 6.365970 TCTATCTTCTTCTTGGTTCTTGCT 57.634 37.500 0.00 0.00 0.00 3.91
2737 3013 7.622893 AATCTATCTTCTTCTTGGTTCTTGC 57.377 36.000 0.00 0.00 0.00 4.01
2741 3017 9.974750 CGTTTTAATCTATCTTCTTCTTGGTTC 57.025 33.333 0.00 0.00 0.00 3.62
2742 3018 9.720769 TCGTTTTAATCTATCTTCTTCTTGGTT 57.279 29.630 0.00 0.00 0.00 3.67
2743 3019 9.720769 TTCGTTTTAATCTATCTTCTTCTTGGT 57.279 29.630 0.00 0.00 0.00 3.67
2747 3023 9.606631 AGCATTCGTTTTAATCTATCTTCTTCT 57.393 29.630 0.00 0.00 0.00 2.85
2749 3025 9.994432 CAAGCATTCGTTTTAATCTATCTTCTT 57.006 29.630 0.00 0.00 0.00 2.52
2750 3026 8.125448 GCAAGCATTCGTTTTAATCTATCTTCT 58.875 33.333 0.00 0.00 0.00 2.85
2751 3027 7.377131 GGCAAGCATTCGTTTTAATCTATCTTC 59.623 37.037 0.00 0.00 0.00 2.87
2752 3028 7.196331 GGCAAGCATTCGTTTTAATCTATCTT 58.804 34.615 0.00 0.00 0.00 2.40
2753 3029 6.238759 GGGCAAGCATTCGTTTTAATCTATCT 60.239 38.462 0.00 0.00 0.00 1.98
2754 3030 5.915196 GGGCAAGCATTCGTTTTAATCTATC 59.085 40.000 0.00 0.00 0.00 2.08
2755 3031 5.359576 TGGGCAAGCATTCGTTTTAATCTAT 59.640 36.000 0.00 0.00 0.00 1.98
2756 3032 4.702612 TGGGCAAGCATTCGTTTTAATCTA 59.297 37.500 0.00 0.00 0.00 1.98
2757 3033 3.509575 TGGGCAAGCATTCGTTTTAATCT 59.490 39.130 0.00 0.00 0.00 2.40
2758 3034 3.843999 TGGGCAAGCATTCGTTTTAATC 58.156 40.909 0.00 0.00 0.00 1.75
2759 3035 3.951775 TGGGCAAGCATTCGTTTTAAT 57.048 38.095 0.00 0.00 0.00 1.40
2760 3036 3.068873 ACTTGGGCAAGCATTCGTTTTAA 59.931 39.130 0.00 0.00 41.99 1.52
2761 3037 2.625790 ACTTGGGCAAGCATTCGTTTTA 59.374 40.909 0.00 0.00 41.99 1.52
2762 3038 1.412343 ACTTGGGCAAGCATTCGTTTT 59.588 42.857 0.00 0.00 41.99 2.43
2763 3039 1.039856 ACTTGGGCAAGCATTCGTTT 58.960 45.000 0.00 0.00 41.99 3.60
2764 3040 1.039856 AACTTGGGCAAGCATTCGTT 58.960 45.000 0.00 0.00 41.99 3.85
2765 3041 1.039856 AAACTTGGGCAAGCATTCGT 58.960 45.000 0.00 0.00 41.99 3.85
2766 3042 2.153366 AAAACTTGGGCAAGCATTCG 57.847 45.000 0.00 0.00 41.99 3.34
2783 3059 4.201970 CGTAGGTTTCTGAACTGCCAAAAA 60.202 41.667 0.00 0.00 36.03 1.94
2784 3060 3.314080 CGTAGGTTTCTGAACTGCCAAAA 59.686 43.478 0.00 0.00 36.03 2.44
2785 3061 2.875933 CGTAGGTTTCTGAACTGCCAAA 59.124 45.455 0.00 0.00 36.03 3.28
2786 3062 2.158871 ACGTAGGTTTCTGAACTGCCAA 60.159 45.455 0.00 0.00 36.03 4.52
2787 3063 1.414919 ACGTAGGTTTCTGAACTGCCA 59.585 47.619 0.00 0.00 36.03 4.92
2788 3064 2.067013 GACGTAGGTTTCTGAACTGCC 58.933 52.381 0.00 0.00 36.03 4.85
2789 3065 2.067013 GGACGTAGGTTTCTGAACTGC 58.933 52.381 0.00 0.00 36.03 4.40
2790 3066 3.318017 CTGGACGTAGGTTTCTGAACTG 58.682 50.000 0.00 0.00 36.03 3.16
2791 3067 2.299297 CCTGGACGTAGGTTTCTGAACT 59.701 50.000 0.00 0.00 36.03 3.01
2792 3068 2.612221 CCCTGGACGTAGGTTTCTGAAC 60.612 54.545 3.73 0.00 36.02 3.18
2793 3069 1.621814 CCCTGGACGTAGGTTTCTGAA 59.378 52.381 3.73 0.00 36.02 3.02
2794 3070 1.263356 CCCTGGACGTAGGTTTCTGA 58.737 55.000 3.73 0.00 36.02 3.27
2795 3071 0.974383 ACCCTGGACGTAGGTTTCTG 59.026 55.000 3.73 0.00 36.02 3.02
2796 3072 1.725803 AACCCTGGACGTAGGTTTCT 58.274 50.000 3.73 0.00 41.07 2.52
2797 3073 2.676176 GCTAACCCTGGACGTAGGTTTC 60.676 54.545 14.63 6.38 41.07 2.78
2798 3074 1.277273 GCTAACCCTGGACGTAGGTTT 59.723 52.381 14.63 5.00 41.07 3.27
2799 3075 0.900421 GCTAACCCTGGACGTAGGTT 59.100 55.000 14.07 14.07 45.66 3.50
2800 3076 1.318158 CGCTAACCCTGGACGTAGGT 61.318 60.000 3.73 0.00 36.02 3.08
2801 3077 1.318158 ACGCTAACCCTGGACGTAGG 61.318 60.000 0.00 0.00 34.79 3.18
2802 3078 0.529378 AACGCTAACCCTGGACGTAG 59.471 55.000 0.00 0.00 35.64 3.51
2803 3079 0.244450 CAACGCTAACCCTGGACGTA 59.756 55.000 0.00 0.00 35.64 3.57
2804 3080 1.005394 CAACGCTAACCCTGGACGT 60.005 57.895 0.00 0.00 38.88 4.34
2805 3081 1.740296 CCAACGCTAACCCTGGACG 60.740 63.158 0.00 0.00 0.00 4.79
2806 3082 0.672711 GACCAACGCTAACCCTGGAC 60.673 60.000 0.00 0.00 32.97 4.02
2807 3083 1.675219 GACCAACGCTAACCCTGGA 59.325 57.895 0.00 0.00 32.97 3.86
2808 3084 1.376812 GGACCAACGCTAACCCTGG 60.377 63.158 0.00 0.00 34.95 4.45
2809 3085 0.673644 CTGGACCAACGCTAACCCTG 60.674 60.000 0.00 0.00 0.00 4.45
2810 3086 1.677552 CTGGACCAACGCTAACCCT 59.322 57.895 0.00 0.00 0.00 4.34
2811 3087 1.376812 CCTGGACCAACGCTAACCC 60.377 63.158 0.00 0.00 0.00 4.11
2812 3088 0.391263 CTCCTGGACCAACGCTAACC 60.391 60.000 0.00 0.00 0.00 2.85
2813 3089 0.606604 TCTCCTGGACCAACGCTAAC 59.393 55.000 0.00 0.00 0.00 2.34
2814 3090 1.480954 GATCTCCTGGACCAACGCTAA 59.519 52.381 0.00 0.00 0.00 3.09
2815 3091 1.112113 GATCTCCTGGACCAACGCTA 58.888 55.000 0.00 0.00 0.00 4.26
2816 3092 1.617947 GGATCTCCTGGACCAACGCT 61.618 60.000 0.00 0.00 0.00 5.07
2817 3093 1.153349 GGATCTCCTGGACCAACGC 60.153 63.158 0.00 0.00 0.00 4.84
2818 3094 0.833287 ATGGATCTCCTGGACCAACG 59.167 55.000 8.43 0.00 36.00 4.10
2819 3095 2.103941 GAGATGGATCTCCTGGACCAAC 59.896 54.545 8.43 6.34 45.88 3.77
2820 3096 2.402564 GAGATGGATCTCCTGGACCAA 58.597 52.381 8.43 0.00 45.88 3.67
2821 3097 2.094100 GAGATGGATCTCCTGGACCA 57.906 55.000 6.95 6.95 45.88 4.02
2830 3106 0.761802 GAAAGGGGCGAGATGGATCT 59.238 55.000 0.00 0.00 40.50 2.75
2831 3107 0.761802 AGAAAGGGGCGAGATGGATC 59.238 55.000 0.00 0.00 0.00 3.36
2832 3108 0.761802 GAGAAAGGGGCGAGATGGAT 59.238 55.000 0.00 0.00 0.00 3.41
2833 3109 0.325671 AGAGAAAGGGGCGAGATGGA 60.326 55.000 0.00 0.00 0.00 3.41
2834 3110 0.543749 AAGAGAAAGGGGCGAGATGG 59.456 55.000 0.00 0.00 0.00 3.51
2835 3111 2.012673 CAAAGAGAAAGGGGCGAGATG 58.987 52.381 0.00 0.00 0.00 2.90
2836 3112 1.680249 GCAAAGAGAAAGGGGCGAGAT 60.680 52.381 0.00 0.00 0.00 2.75
2837 3113 0.321653 GCAAAGAGAAAGGGGCGAGA 60.322 55.000 0.00 0.00 0.00 4.04
2838 3114 0.606401 TGCAAAGAGAAAGGGGCGAG 60.606 55.000 0.00 0.00 0.00 5.03
2839 3115 0.889186 GTGCAAAGAGAAAGGGGCGA 60.889 55.000 0.00 0.00 0.00 5.54
2840 3116 1.581447 GTGCAAAGAGAAAGGGGCG 59.419 57.895 0.00 0.00 0.00 6.13
2841 3117 0.827507 TGGTGCAAAGAGAAAGGGGC 60.828 55.000 0.00 0.00 0.00 5.80
2842 3118 1.251251 CTGGTGCAAAGAGAAAGGGG 58.749 55.000 0.00 0.00 0.00 4.79
2843 3119 1.986882 ACTGGTGCAAAGAGAAAGGG 58.013 50.000 4.72 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.