Multiple sequence alignment - TraesCS2B01G269600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G269600 chr2B 100.000 4300 0 0 4087 8386 366837084 366832785 0.000000e+00 7941.0
1 TraesCS2B01G269600 chr2B 100.000 3740 0 0 1 3740 366841170 366837431 0.000000e+00 6907.0
2 TraesCS2B01G269600 chr2B 89.091 55 3 3 4832 4883 436958099 436958045 1.950000e-06 65.8
3 TraesCS2B01G269600 chr2B 82.812 64 10 1 4818 4881 338749879 338749941 1.000000e-03 56.5
4 TraesCS2B01G269600 chr2B 87.234 47 3 3 3651 3695 239516871 239516826 5.500000e-02 51.0
5 TraesCS2B01G269600 chr2A 93.955 3044 109 28 720 3740 355454028 355457019 0.000000e+00 4532.0
6 TraesCS2B01G269600 chr2A 94.105 1391 47 12 6473 7853 355459967 355461332 0.000000e+00 2082.0
7 TraesCS2B01G269600 chr2A 97.343 715 19 0 4087 4801 355457046 355457760 0.000000e+00 1216.0
8 TraesCS2B01G269600 chr2A 94.779 747 31 4 5475 6221 355459228 355459966 0.000000e+00 1157.0
9 TraesCS2B01G269600 chr2A 95.509 579 22 3 4901 5476 355458498 355459075 0.000000e+00 922.0
10 TraesCS2B01G269600 chr2A 84.021 388 14 15 8011 8386 355461599 355461950 6.280000e-86 329.0
11 TraesCS2B01G269600 chr2A 85.405 185 12 6 7921 8105 355461468 355461637 2.410000e-40 178.0
12 TraesCS2B01G269600 chr2A 86.538 104 12 2 624 726 355452348 355452450 6.880000e-21 113.0
13 TraesCS2B01G269600 chr2A 87.755 98 11 1 7832 7928 416281178 416281081 6.880000e-21 113.0
14 TraesCS2B01G269600 chr2A 89.286 84 6 2 7847 7928 362131025 362130943 1.490000e-17 102.0
15 TraesCS2B01G269600 chr2A 95.312 64 2 1 8040 8103 355461532 355461594 5.360000e-17 100.0
16 TraesCS2B01G269600 chr2A 100.000 45 0 0 4835 4879 355458463 355458507 5.390000e-12 84.2
17 TraesCS2B01G269600 chr2D 93.364 2788 108 24 720 3489 231604092 231601364 0.000000e+00 4052.0
18 TraesCS2B01G269600 chr2D 95.696 1394 44 4 6453 7835 231597268 231595880 0.000000e+00 2228.0
19 TraesCS2B01G269600 chr2D 95.569 677 21 5 5548 6224 231598335 231597668 0.000000e+00 1075.0
20 TraesCS2B01G269600 chr2D 96.073 662 20 2 4957 5618 231598988 231598333 0.000000e+00 1074.0
21 TraesCS2B01G269600 chr2D 96.505 515 17 1 4284 4798 231600927 231600414 0.000000e+00 850.0
22 TraesCS2B01G269600 chr2D 89.091 385 20 7 8003 8386 231594782 231594419 7.670000e-125 459.0
23 TraesCS2B01G269600 chr2D 98.000 200 4 0 4087 4286 231601154 231600955 1.730000e-91 348.0
24 TraesCS2B01G269600 chr2D 97.253 182 5 0 3558 3739 231601364 231601183 8.180000e-80 309.0
25 TraesCS2B01G269600 chr2D 95.425 153 5 1 4808 4958 231599264 231599112 8.410000e-60 243.0
26 TraesCS2B01G269600 chr2D 97.436 39 1 0 8059 8097 231594782 231594744 5.430000e-07 67.6
27 TraesCS2B01G269600 chr7D 87.549 514 56 7 10 521 9175062 9174555 9.380000e-164 588.0
28 TraesCS2B01G269600 chr7D 81.373 102 12 7 1278 1375 491344221 491344123 9.030000e-10 76.8
29 TraesCS2B01G269600 chr6A 85.294 544 76 4 1 544 436367266 436367805 7.350000e-155 558.0
30 TraesCS2B01G269600 chr6A 76.529 801 126 34 2381 3133 74406399 74407185 1.710000e-101 381.0
31 TraesCS2B01G269600 chr5B 81.199 367 56 10 2513 2872 656716296 656715936 4.960000e-72 283.0
32 TraesCS2B01G269600 chr5B 86.765 68 6 1 1278 1345 643981525 643981461 1.170000e-08 73.1
33 TraesCS2B01G269600 chr5B 79.798 99 11 7 2378 2474 694312337 694312428 7.030000e-06 63.9
34 TraesCS2B01G269600 chr4B 79.656 349 63 7 2538 2880 370884998 370885344 2.340000e-60 244.0
35 TraesCS2B01G269600 chr4B 80.208 96 11 6 2381 2474 25842118 25842207 1.950000e-06 65.8
36 TraesCS2B01G269600 chr4B 89.796 49 5 0 4833 4881 465482332 465482380 7.030000e-06 63.9
37 TraesCS2B01G269600 chr4D 81.429 280 34 7 1 279 147518000 147518262 6.590000e-51 213.0
38 TraesCS2B01G269600 chr1A 76.758 327 61 10 2599 2917 534571523 534571204 1.450000e-37 169.0
39 TraesCS2B01G269600 chr1A 95.238 42 2 0 3671 3712 158655865 158655824 5.430000e-07 67.6
40 TraesCS2B01G269600 chr5D 77.816 293 45 11 2649 2931 367406388 367406670 6.740000e-36 163.0
41 TraesCS2B01G269600 chr5D 86.765 68 6 1 1278 1345 513471044 513470980 1.170000e-08 73.1
42 TraesCS2B01G269600 chr5D 85.075 67 10 0 4818 4884 528961630 528961564 1.510000e-07 69.4
43 TraesCS2B01G269600 chr6B 76.817 289 50 16 125 405 593999563 593999284 6.780000e-31 147.0
44 TraesCS2B01G269600 chr6B 79.839 124 23 2 4944 5066 126151611 126151489 1.160000e-13 89.8
45 TraesCS2B01G269600 chr5A 87.379 103 11 2 7830 7930 623444354 623444456 5.320000e-22 117.0
46 TraesCS2B01G269600 chr5A 81.731 104 8 4 1278 1375 641122010 641121912 9.030000e-10 76.8
47 TraesCS2B01G269600 chr1D 81.410 156 15 2 2867 3022 81746518 81746659 1.910000e-21 115.0
48 TraesCS2B01G269600 chr1D 87.912 91 11 0 7838 7928 414883256 414883166 3.200000e-19 108.0
49 TraesCS2B01G269600 chr1D 86.598 97 12 1 7833 7928 316624045 316624141 1.150000e-18 106.0
50 TraesCS2B01G269600 chr1D 82.143 112 13 7 7833 7940 473539220 473539112 1.160000e-13 89.8
51 TraesCS2B01G269600 chr1D 91.525 59 2 3 3625 3682 48883275 48883219 2.510000e-10 78.7
52 TraesCS2B01G269600 chr7A 91.566 83 6 1 7847 7928 510625325 510625407 6.880000e-21 113.0
53 TraesCS2B01G269600 chr7A 97.500 40 1 0 4832 4871 715223850 715223889 1.510000e-07 69.4
54 TraesCS2B01G269600 chr7A 79.381 97 14 5 2379 2474 213799780 213799689 7.030000e-06 63.9
55 TraesCS2B01G269600 chr7A 90.698 43 4 0 541 583 487312387 487312345 3.270000e-04 58.4
56 TraesCS2B01G269600 chr3D 81.102 127 24 0 4944 5070 532052999 532052873 1.490000e-17 102.0
57 TraesCS2B01G269600 chr3A 89.157 83 8 1 7847 7928 437463160 437463242 1.490000e-17 102.0
58 TraesCS2B01G269600 chr3A 84.615 104 14 2 7827 7928 438373154 438373051 1.490000e-17 102.0
59 TraesCS2B01G269600 chr4A 88.158 76 8 1 3663 3737 42095095 42095020 1.160000e-13 89.8
60 TraesCS2B01G269600 chr4A 90.000 50 3 2 4833 4881 86294356 86294308 7.030000e-06 63.9
61 TraesCS2B01G269600 chr3B 81.915 94 12 5 408 497 711523309 711523401 3.250000e-09 75.0
62 TraesCS2B01G269600 chr3B 80.769 104 9 4 1278 1375 782743285 782743187 4.200000e-08 71.3
63 TraesCS2B01G269600 chr1B 80.412 97 13 4 2379 2474 669307209 669307118 1.510000e-07 69.4
64 TraesCS2B01G269600 chr1B 95.238 42 2 0 2842 2883 681032898 681032939 5.430000e-07 67.6
65 TraesCS2B01G269600 chr1B 89.583 48 5 0 4833 4880 50782110 50782157 2.530000e-05 62.1
66 TraesCS2B01G269600 chr1B 82.192 73 8 3 2381 2453 540149918 540149851 3.270000e-04 58.4
67 TraesCS2B01G269600 chr6D 96.970 33 1 0 2381 2413 465582139 465582171 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G269600 chr2B 366832785 366841170 8385 True 7424.00 7941 100.0000 1 8386 2 chr2B.!!$R3 8385
1 TraesCS2B01G269600 chr2A 355452348 355461950 9602 False 1071.32 4532 92.6967 624 8386 10 chr2A.!!$F1 7762
2 TraesCS2B01G269600 chr2D 231594419 231604092 9673 True 1070.56 4052 95.4412 720 8386 10 chr2D.!!$R1 7666
3 TraesCS2B01G269600 chr7D 9174555 9175062 507 True 588.00 588 87.5490 10 521 1 chr7D.!!$R1 511
4 TraesCS2B01G269600 chr6A 436367266 436367805 539 False 558.00 558 85.2940 1 544 1 chr6A.!!$F2 543
5 TraesCS2B01G269600 chr6A 74406399 74407185 786 False 381.00 381 76.5290 2381 3133 1 chr6A.!!$F1 752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 613 0.039617 TTGTCGTTACACCGGTACCG 60.040 55.0 27.68 27.68 36.82 4.02 F
1385 2974 0.032952 CGAGTCTCCGTTTGGTTGGA 59.967 55.0 0.00 0.00 36.30 3.53 F
2521 4125 0.462047 ATTCCCGACTCCAATCACGC 60.462 55.0 0.00 0.00 0.00 5.34 F
3203 4855 0.247460 AGCAGCTGCATACGTCTTGA 59.753 50.0 38.24 0.00 45.16 3.02 F
3209 4861 0.389296 TGCATACGTCTTGACACCCG 60.389 55.0 0.00 0.00 0.00 5.28 F
4496 6192 0.686789 AGTCACACATGCCTGCAGTA 59.313 50.0 13.81 1.15 0.00 2.74 F
6264 9483 0.105778 GCGGGGATGGAGAGAAAGAG 59.894 60.0 0.00 0.00 0.00 2.85 F
6432 9857 0.040204 AATGAGGGCAGTTTGAGGGG 59.960 55.0 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 3665 0.110010 GCGCAGAAACTGGAAGCTTC 60.110 55.000 18.54 18.54 39.28 3.86 R
2831 4449 0.039256 GTCGCACGGTTACCACTACA 60.039 55.000 1.13 0.00 0.00 2.74 R
3353 5018 1.224592 CTGGCTGGGCGGACTTTAT 59.775 57.895 0.00 0.00 0.00 1.40 R
4668 6364 1.339438 GGCAGGCACAAGAGATTCAGA 60.339 52.381 0.00 0.00 0.00 3.27 R
4755 6451 2.894765 TGCACTAGTACACTGCAGGTTA 59.105 45.455 19.93 5.51 36.00 2.85 R
6321 9540 0.099436 GACATGTTCTGGCAATCCGC 59.901 55.000 0.00 0.00 41.28 5.54 R
7360 10786 0.038310 AGGGTTAGCCTCCAGTTTGC 59.962 55.000 0.00 0.00 34.45 3.68 R
7911 11350 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.329638 TCTTTTATTGGGCCTCATGGAA 57.670 40.909 4.53 0.00 34.57 3.53
65 66 1.207791 CACTCCTCTAAGTGGGCCAT 58.792 55.000 10.70 0.00 42.42 4.40
75 76 4.202574 TGGGCCATGGGGTATGCG 62.203 66.667 15.13 0.00 35.37 4.73
104 105 1.376683 TTTCCTCGATTGGGCCACG 60.377 57.895 5.23 8.22 0.00 4.94
109 110 4.733542 CGATTGGGCCACGGGGTT 62.734 66.667 5.23 0.00 36.17 4.11
168 169 7.473735 TTGTAACCAATGATTTGATTAGGCA 57.526 32.000 0.00 0.00 34.60 4.75
171 172 7.560991 TGTAACCAATGATTTGATTAGGCAGAT 59.439 33.333 0.00 0.00 34.60 2.90
199 200 8.564574 ACAATTACATAACACAAACTTCATCGT 58.435 29.630 0.00 0.00 0.00 3.73
212 213 1.003355 CATCGTGCCTCAACTGGGT 60.003 57.895 0.00 0.00 0.00 4.51
242 243 7.784633 AAAACACACCAACTCAATAAATTGG 57.215 32.000 3.00 0.70 46.95 3.16
282 283 5.013258 AGATAGTATAACCTCACCCTCCC 57.987 47.826 0.00 0.00 0.00 4.30
297 298 2.311841 CCCTCCCTAGAACCAAAACCAT 59.688 50.000 0.00 0.00 0.00 3.55
329 330 8.813643 ATATACGTCTTGAATTTACCAGCTAC 57.186 34.615 0.00 0.00 0.00 3.58
355 356 4.394729 TCCACTAAGTCGGCTTGAAAATT 58.605 39.130 13.69 0.00 36.22 1.82
365 366 4.770010 TCGGCTTGAAAATTCAATAAGGGT 59.230 37.500 8.88 0.00 45.26 4.34
385 386 5.711036 AGGGTAGGATGAGTATGATAACGTC 59.289 44.000 0.00 0.00 0.00 4.34
393 394 7.380065 GGATGAGTATGATAACGTCAGAAGAAC 59.620 40.741 0.00 0.00 40.92 3.01
395 396 7.027760 TGAGTATGATAACGTCAGAAGAACAC 58.972 38.462 0.00 0.00 40.92 3.32
437 438 3.644335 GTTGTCTGGGGTACTAGAGGAT 58.356 50.000 0.00 0.00 0.00 3.24
467 468 3.948473 GGAAAGAAAGAGGACAATAGGGC 59.052 47.826 0.00 0.00 0.00 5.19
473 474 0.179081 GAGGACAATAGGGCGGACAC 60.179 60.000 0.00 0.00 0.00 3.67
476 477 1.408266 GGACAATAGGGCGGACACATT 60.408 52.381 0.00 0.00 0.00 2.71
481 482 1.816074 TAGGGCGGACACATTGAAAC 58.184 50.000 0.00 0.00 0.00 2.78
499 500 0.473755 ACAAGTGGACACATGAGCCA 59.526 50.000 13.80 0.55 34.46 4.75
512 513 4.036027 CACATGAGCCAGATAACAATGTCC 59.964 45.833 0.00 0.00 0.00 4.02
515 516 2.173569 GAGCCAGATAACAATGTCCCCT 59.826 50.000 0.00 0.00 0.00 4.79
523 524 1.039856 ACAATGTCCCCTGTTGCAAC 58.960 50.000 22.83 22.83 0.00 4.17
531 532 1.518056 CCCTGTTGCAACGCATGAGT 61.518 55.000 23.79 0.00 38.76 3.41
537 538 3.004210 TGTTGCAACGCATGAGTATTTGT 59.996 39.130 23.79 0.00 38.76 2.83
544 545 5.006153 ACGCATGAGTATTTGTGCTAGTA 57.994 39.130 0.00 0.00 35.52 1.82
545 546 4.804139 ACGCATGAGTATTTGTGCTAGTAC 59.196 41.667 0.00 3.70 35.52 2.73
546 547 5.043903 CGCATGAGTATTTGTGCTAGTACT 58.956 41.667 12.42 0.00 35.52 2.73
547 548 6.183360 ACGCATGAGTATTTGTGCTAGTACTA 60.183 38.462 12.42 1.89 35.52 1.82
548 549 6.142480 CGCATGAGTATTTGTGCTAGTACTAC 59.858 42.308 12.42 6.63 35.52 2.73
549 550 6.421202 GCATGAGTATTTGTGCTAGTACTACC 59.579 42.308 12.42 0.00 34.85 3.18
550 551 7.684670 GCATGAGTATTTGTGCTAGTACTACCT 60.685 40.741 12.42 1.11 34.85 3.08
551 552 8.847196 CATGAGTATTTGTGCTAGTACTACCTA 58.153 37.037 12.42 0.26 0.00 3.08
552 553 8.991783 TGAGTATTTGTGCTAGTACTACCTAT 57.008 34.615 12.42 0.00 0.00 2.57
561 562 9.950496 TGTGCTAGTACTACCTATAATACTACC 57.050 37.037 12.42 0.00 0.00 3.18
562 563 9.950496 GTGCTAGTACTACCTATAATACTACCA 57.050 37.037 3.40 0.00 0.00 3.25
573 574 8.684520 ACCTATAATACTACCATTACGATCAGC 58.315 37.037 0.00 0.00 0.00 4.26
574 575 8.136165 CCTATAATACTACCATTACGATCAGCC 58.864 40.741 0.00 0.00 0.00 4.85
575 576 7.719871 ATAATACTACCATTACGATCAGCCT 57.280 36.000 0.00 0.00 0.00 4.58
576 577 5.646577 ATACTACCATTACGATCAGCCTC 57.353 43.478 0.00 0.00 0.00 4.70
577 578 3.296854 ACTACCATTACGATCAGCCTCA 58.703 45.455 0.00 0.00 0.00 3.86
578 579 3.898123 ACTACCATTACGATCAGCCTCAT 59.102 43.478 0.00 0.00 0.00 2.90
579 580 5.077564 ACTACCATTACGATCAGCCTCATA 58.922 41.667 0.00 0.00 0.00 2.15
580 581 5.717178 ACTACCATTACGATCAGCCTCATAT 59.283 40.000 0.00 0.00 0.00 1.78
581 582 5.078411 ACCATTACGATCAGCCTCATATC 57.922 43.478 0.00 0.00 0.00 1.63
582 583 4.528206 ACCATTACGATCAGCCTCATATCA 59.472 41.667 0.00 0.00 0.00 2.15
583 584 5.012046 ACCATTACGATCAGCCTCATATCAA 59.988 40.000 0.00 0.00 0.00 2.57
584 585 5.934043 CCATTACGATCAGCCTCATATCAAA 59.066 40.000 0.00 0.00 0.00 2.69
585 586 6.128445 CCATTACGATCAGCCTCATATCAAAC 60.128 42.308 0.00 0.00 0.00 2.93
586 587 3.384668 ACGATCAGCCTCATATCAAACG 58.615 45.455 0.00 0.00 0.00 3.60
587 588 2.733552 CGATCAGCCTCATATCAAACGG 59.266 50.000 0.00 0.00 0.00 4.44
588 589 2.620251 TCAGCCTCATATCAAACGGG 57.380 50.000 0.00 0.00 0.00 5.28
589 590 0.947244 CAGCCTCATATCAAACGGGC 59.053 55.000 0.00 0.00 39.82 6.13
590 591 0.839946 AGCCTCATATCAAACGGGCT 59.160 50.000 0.00 0.00 44.14 5.19
591 592 2.047061 AGCCTCATATCAAACGGGCTA 58.953 47.619 2.25 0.00 46.59 3.93
592 593 2.639839 AGCCTCATATCAAACGGGCTAT 59.360 45.455 2.25 0.00 46.59 2.97
593 594 3.073062 AGCCTCATATCAAACGGGCTATT 59.927 43.478 2.25 0.00 46.59 1.73
594 595 3.821033 GCCTCATATCAAACGGGCTATTT 59.179 43.478 0.00 0.00 36.96 1.40
595 596 4.320494 GCCTCATATCAAACGGGCTATTTG 60.320 45.833 7.43 7.43 38.21 2.32
596 597 4.821805 CCTCATATCAAACGGGCTATTTGT 59.178 41.667 11.83 4.95 38.08 2.83
597 598 5.049405 CCTCATATCAAACGGGCTATTTGTC 60.049 44.000 11.83 0.00 38.08 3.18
598 599 4.509970 TCATATCAAACGGGCTATTTGTCG 59.490 41.667 11.83 0.00 38.08 4.35
599 600 2.172851 TCAAACGGGCTATTTGTCGT 57.827 45.000 11.83 0.00 38.08 4.34
600 601 2.496111 TCAAACGGGCTATTTGTCGTT 58.504 42.857 11.83 0.00 45.88 3.85
601 602 3.661944 TCAAACGGGCTATTTGTCGTTA 58.338 40.909 11.83 0.00 43.65 3.18
602 603 3.432933 TCAAACGGGCTATTTGTCGTTAC 59.567 43.478 11.83 0.00 43.65 2.50
603 604 2.747396 ACGGGCTATTTGTCGTTACA 57.253 45.000 0.00 0.00 31.38 2.41
604 605 2.340337 ACGGGCTATTTGTCGTTACAC 58.660 47.619 0.00 0.00 34.61 2.90
605 606 1.662122 CGGGCTATTTGTCGTTACACC 59.338 52.381 0.00 0.00 34.61 4.16
606 607 1.662122 GGGCTATTTGTCGTTACACCG 59.338 52.381 0.00 0.00 34.61 4.94
607 608 1.662122 GGCTATTTGTCGTTACACCGG 59.338 52.381 0.00 0.00 34.61 5.28
608 609 2.340337 GCTATTTGTCGTTACACCGGT 58.660 47.619 0.00 0.00 34.61 5.28
609 610 3.510719 GCTATTTGTCGTTACACCGGTA 58.489 45.455 6.87 0.00 34.61 4.02
610 611 3.304293 GCTATTTGTCGTTACACCGGTAC 59.696 47.826 6.87 0.00 34.61 3.34
611 612 2.147436 TTTGTCGTTACACCGGTACC 57.853 50.000 6.87 0.16 34.61 3.34
612 613 0.039617 TTGTCGTTACACCGGTACCG 60.040 55.000 27.68 27.68 36.82 4.02
622 623 3.437795 CGGTACCGGCGTCACTCT 61.438 66.667 27.00 0.00 35.56 3.24
623 624 2.108514 CGGTACCGGCGTCACTCTA 61.109 63.158 27.00 0.00 35.56 2.43
624 625 1.442526 CGGTACCGGCGTCACTCTAT 61.443 60.000 27.00 0.00 35.56 1.98
625 626 0.743097 GGTACCGGCGTCACTCTATT 59.257 55.000 6.01 0.00 0.00 1.73
626 627 1.268948 GGTACCGGCGTCACTCTATTC 60.269 57.143 6.01 0.00 0.00 1.75
627 628 0.659427 TACCGGCGTCACTCTATTCG 59.341 55.000 6.01 0.00 0.00 3.34
628 629 1.944676 CCGGCGTCACTCTATTCGC 60.945 63.158 6.01 0.00 46.42 4.70
629 630 1.064296 CGGCGTCACTCTATTCGCT 59.936 57.895 0.00 0.00 46.37 4.93
630 631 0.525668 CGGCGTCACTCTATTCGCTT 60.526 55.000 0.00 0.00 46.37 4.68
631 632 0.924090 GGCGTCACTCTATTCGCTTG 59.076 55.000 8.18 0.00 46.37 4.01
632 633 0.924090 GCGTCACTCTATTCGCTTGG 59.076 55.000 0.00 0.00 44.28 3.61
633 634 0.924090 CGTCACTCTATTCGCTTGGC 59.076 55.000 0.00 0.00 0.00 4.52
677 678 2.722094 TGCATTTAAGGAAGCCGACAT 58.278 42.857 0.00 0.00 0.00 3.06
684 685 1.794714 AGGAAGCCGACATATGGACT 58.205 50.000 7.80 0.00 0.00 3.85
691 692 1.341531 CCGACATATGGACTCCAGGAC 59.658 57.143 7.80 0.00 36.75 3.85
693 694 2.398588 GACATATGGACTCCAGGACCA 58.601 52.381 7.80 1.19 36.75 4.02
699 700 1.699634 TGGACTCCAGGACCAAAGAAG 59.300 52.381 0.00 0.00 0.00 2.85
716 717 0.389948 AAGCTCGACGTGTCATTCCC 60.390 55.000 0.00 0.00 0.00 3.97
722 723 3.319755 TCGACGTGTCATTCCCTTTTAC 58.680 45.455 0.00 0.00 0.00 2.01
726 727 3.495753 ACGTGTCATTCCCTTTTACGTTC 59.504 43.478 0.00 0.00 39.88 3.95
748 2333 3.249189 GGGCCACACCTCCACTGA 61.249 66.667 4.39 0.00 39.10 3.41
758 2343 0.393537 CCTCCACTGACAGCCAATCC 60.394 60.000 1.25 0.00 0.00 3.01
777 2363 1.823260 CTCGCGTGCCACGTTTTGTA 61.823 55.000 19.57 0.00 44.73 2.41
947 2535 4.840005 CCTCCGCCGCTTCCTTCC 62.840 72.222 0.00 0.00 0.00 3.46
948 2536 3.775654 CTCCGCCGCTTCCTTCCT 61.776 66.667 0.00 0.00 0.00 3.36
949 2537 3.724914 CTCCGCCGCTTCCTTCCTC 62.725 68.421 0.00 0.00 0.00 3.71
950 2538 4.840005 CCGCCGCTTCCTTCCTCC 62.840 72.222 0.00 0.00 0.00 4.30
1222 2811 1.346722 CCGGGTGTTCTGACTAGGTTT 59.653 52.381 0.00 0.00 0.00 3.27
1245 2834 2.816087 TGCTTTTCCTCTGATTCAGCAC 59.184 45.455 8.89 0.00 30.94 4.40
1376 2965 1.897137 TGAGTGCACGAGTCTCCGT 60.897 57.895 12.01 0.00 44.43 4.69
1377 2966 1.286260 GAGTGCACGAGTCTCCGTT 59.714 57.895 12.01 0.00 41.29 4.44
1378 2967 0.318784 GAGTGCACGAGTCTCCGTTT 60.319 55.000 12.01 0.00 41.29 3.60
1379 2968 0.597637 AGTGCACGAGTCTCCGTTTG 60.598 55.000 12.01 0.00 41.29 2.93
1380 2969 1.300620 TGCACGAGTCTCCGTTTGG 60.301 57.895 0.00 0.00 41.29 3.28
1381 2970 1.300697 GCACGAGTCTCCGTTTGGT 60.301 57.895 0.00 0.00 41.29 3.67
1382 2971 0.878961 GCACGAGTCTCCGTTTGGTT 60.879 55.000 0.00 0.00 41.29 3.67
1383 2972 0.859232 CACGAGTCTCCGTTTGGTTG 59.141 55.000 0.00 0.00 41.29 3.77
1384 2973 0.249741 ACGAGTCTCCGTTTGGTTGG 60.250 55.000 0.00 0.00 40.17 3.77
1385 2974 0.032952 CGAGTCTCCGTTTGGTTGGA 59.967 55.000 0.00 0.00 36.30 3.53
1386 2975 1.337823 CGAGTCTCCGTTTGGTTGGAT 60.338 52.381 0.00 0.00 36.30 3.41
1387 2976 2.094390 CGAGTCTCCGTTTGGTTGGATA 60.094 50.000 0.00 0.00 36.30 2.59
1388 2977 3.430374 CGAGTCTCCGTTTGGTTGGATAT 60.430 47.826 0.00 0.00 36.30 1.63
1389 2978 4.202080 CGAGTCTCCGTTTGGTTGGATATA 60.202 45.833 0.00 0.00 36.30 0.86
1390 2979 5.667466 GAGTCTCCGTTTGGTTGGATATAA 58.333 41.667 0.00 0.00 36.30 0.98
1391 2980 6.057321 AGTCTCCGTTTGGTTGGATATAAA 57.943 37.500 0.00 0.00 36.30 1.40
1392 2981 5.878669 AGTCTCCGTTTGGTTGGATATAAAC 59.121 40.000 0.00 0.00 36.30 2.01
1403 2992 7.613585 TGGTTGGATATAAACGTTTCTAGTCA 58.386 34.615 18.42 11.17 0.00 3.41
1666 3255 9.449719 CCCTCACTTATCTGTTAATGTAGTTTT 57.550 33.333 0.00 0.00 0.00 2.43
1706 3298 2.849880 TTTTCTTGTGCAGCTGTGAC 57.150 45.000 16.64 12.91 0.00 3.67
1772 3364 6.891388 TGACCAAAAGGTACAGAAGAACTTA 58.109 36.000 0.00 0.00 0.00 2.24
1810 3402 7.125755 GGAGCATTTTAAAGTTGCTTGTTTTC 58.874 34.615 21.59 12.13 46.21 2.29
1811 3403 7.011389 GGAGCATTTTAAAGTTGCTTGTTTTCT 59.989 33.333 21.59 4.83 46.21 2.52
1926 3518 1.918293 AGCGGAAGGTGGGTCATCA 60.918 57.895 0.00 0.00 42.35 3.07
1928 3520 1.899437 GCGGAAGGTGGGTCATCAGA 61.899 60.000 0.00 0.00 0.00 3.27
1951 3543 4.286297 TGCTCAACTATGTGGTAGCTTT 57.714 40.909 0.00 0.00 33.47 3.51
2210 3803 1.194121 AAGCAAATCCTGGGTTGGCC 61.194 55.000 15.51 0.00 0.00 5.36
2248 3841 1.915489 TGTTGGTCAGCTGGTATGGAT 59.085 47.619 15.13 0.00 0.00 3.41
2249 3842 2.308570 TGTTGGTCAGCTGGTATGGATT 59.691 45.455 15.13 0.00 0.00 3.01
2252 3845 4.046286 TGGTCAGCTGGTATGGATTTTT 57.954 40.909 15.13 0.00 0.00 1.94
2294 3888 5.776744 ACAGCATCCAGAAAGTGATTTTTC 58.223 37.500 0.00 0.00 37.34 2.29
2301 3895 5.530915 TCCAGAAAGTGATTTTTCGATGTGT 59.469 36.000 0.00 0.00 40.99 3.72
2327 3921 3.243367 TGTTTTGGAATGCCTCGAAAGTG 60.243 43.478 0.00 0.00 33.82 3.16
2341 3935 1.852067 AAAGTGACGGCGTGAATGGC 61.852 55.000 21.19 1.27 0.00 4.40
2433 4027 4.008933 GGCCAGCACGTGAGACCT 62.009 66.667 22.23 3.24 0.00 3.85
2434 4028 2.433318 GCCAGCACGTGAGACCTC 60.433 66.667 22.23 0.00 0.00 3.85
2475 4069 0.896923 GATGCCAATCCCAAAGCACA 59.103 50.000 0.00 0.00 38.21 4.57
2521 4125 0.462047 ATTCCCGACTCCAATCACGC 60.462 55.000 0.00 0.00 0.00 5.34
2595 4207 2.172372 GGCTCACATGCTGCTCTCG 61.172 63.158 0.00 0.00 0.00 4.04
2603 4215 2.435586 GCTGCTCTCGTGCATGGT 60.436 61.111 5.98 0.00 42.48 3.55
2738 4350 1.381872 ACTCCTAGCCATGGTCGCT 60.382 57.895 14.67 6.91 40.45 4.93
2782 4394 2.311294 GTGTGGCACGATCCTATGC 58.689 57.895 13.77 3.24 41.29 3.14
2792 4410 4.559502 GCACGATCCTATGCTGACTTATCA 60.560 45.833 0.00 0.00 38.84 2.15
2927 4553 0.603569 CGGTGGTTCTAGTGTCAGCT 59.396 55.000 0.00 0.00 0.00 4.24
2928 4554 1.816835 CGGTGGTTCTAGTGTCAGCTA 59.183 52.381 0.00 0.00 0.00 3.32
2929 4555 2.230508 CGGTGGTTCTAGTGTCAGCTAA 59.769 50.000 0.00 0.00 0.00 3.09
2930 4556 3.119101 CGGTGGTTCTAGTGTCAGCTAAT 60.119 47.826 0.00 0.00 0.00 1.73
2931 4557 4.620803 CGGTGGTTCTAGTGTCAGCTAATT 60.621 45.833 0.00 0.00 0.00 1.40
2932 4558 4.870991 GGTGGTTCTAGTGTCAGCTAATTC 59.129 45.833 0.00 0.00 0.00 2.17
2933 4559 5.479306 GTGGTTCTAGTGTCAGCTAATTCA 58.521 41.667 0.00 0.00 0.00 2.57
2934 4560 5.578727 GTGGTTCTAGTGTCAGCTAATTCAG 59.421 44.000 0.00 0.00 0.00 3.02
3203 4855 0.247460 AGCAGCTGCATACGTCTTGA 59.753 50.000 38.24 0.00 45.16 3.02
3209 4861 0.389296 TGCATACGTCTTGACACCCG 60.389 55.000 0.00 0.00 0.00 5.28
3279 4932 2.976185 TGACCACCATCAACAAGGAGTA 59.024 45.455 0.00 0.00 0.00 2.59
3402 5067 2.266055 GAGGTCTTCCAGCGTGGG 59.734 66.667 4.52 0.00 38.32 4.61
3429 5094 1.625315 CAGGAAGTCTCCACATGGTCA 59.375 52.381 0.00 0.00 45.24 4.02
3573 5238 5.418840 GGGAGAACAAGCAAATCCTAAATCA 59.581 40.000 0.00 0.00 0.00 2.57
3609 5274 7.094248 TGTGTACGTATATGTACCTGTTCAAGT 60.094 37.037 25.52 0.00 43.22 3.16
3629 5294 5.121380 AGTGTAGGAATTGCATTCAGGAT 57.879 39.130 0.00 0.00 41.03 3.24
4267 5933 4.796038 ACAATAAATGCTGCTGCTTCTT 57.204 36.364 17.00 9.34 40.48 2.52
4280 5946 6.128982 GCTGCTGCTTCTTTTCATTTCTTAAC 60.129 38.462 8.53 0.00 36.03 2.01
4317 6013 4.023980 CTGGTACTAGTGATGAACCTGGA 58.976 47.826 5.39 0.00 0.00 3.86
4367 6063 9.315525 GGAACTTGGAGACTTAAACTATGATAC 57.684 37.037 0.00 0.00 0.00 2.24
4496 6192 0.686789 AGTCACACATGCCTGCAGTA 59.313 50.000 13.81 1.15 0.00 2.74
4545 6241 7.893124 TTAGTTTGTCGGATAGGAGATTAGT 57.107 36.000 0.00 0.00 0.00 2.24
4668 6364 5.103473 TCCAGATCCACTATGTACCTCTCTT 60.103 44.000 0.00 0.00 0.00 2.85
4682 6378 5.404466 ACCTCTCTTCTGAATCTCTTGTG 57.596 43.478 0.00 0.00 0.00 3.33
4719 6415 6.832520 TTTCATTGCTTAGCATTTGTCCTA 57.167 33.333 8.05 0.00 38.76 2.94
4724 6420 8.313292 TCATTGCTTAGCATTTGTCCTAAAATT 58.687 29.630 8.05 0.00 38.76 1.82
4754 6450 2.035449 TCGACGTCTCTGATGGTTGTTT 59.965 45.455 14.70 0.00 0.00 2.83
4755 6451 2.800544 CGACGTCTCTGATGGTTGTTTT 59.199 45.455 14.70 0.00 0.00 2.43
4801 6497 3.640029 TCATAATACTCCCTCCGTTCCAC 59.360 47.826 0.00 0.00 0.00 4.02
4804 6500 1.719529 TACTCCCTCCGTTCCACAAA 58.280 50.000 0.00 0.00 0.00 2.83
4806 6502 1.235724 CTCCCTCCGTTCCACAAAAC 58.764 55.000 0.00 0.00 0.00 2.43
4951 7824 6.638168 ACATCGAGACGCATATTCATATTG 57.362 37.500 0.00 0.00 0.00 1.90
5003 8001 7.745620 AGTTCTTTCGATTAACTTGGTTGAT 57.254 32.000 2.67 0.00 29.25 2.57
5014 8012 9.129209 GATTAACTTGGTTGATCTTTGTAAAGC 57.871 33.333 7.58 0.00 36.20 3.51
5055 8053 7.124573 TCTGTATGCACTACATTATGGAACT 57.875 36.000 8.72 0.00 39.58 3.01
5063 8061 3.567478 ACATTATGGAACTGAGGGAGC 57.433 47.619 0.00 0.00 0.00 4.70
5128 8126 3.806316 ACCGCGTTCAAAATTCAGTAG 57.194 42.857 4.92 0.00 0.00 2.57
5152 8150 8.172352 AGAGTAGAAGTAGCATATGTAACAGG 57.828 38.462 4.29 0.00 0.00 4.00
5365 8363 1.212935 AGGGATTTAGTGCGCCATCTT 59.787 47.619 4.18 0.00 0.00 2.40
5371 8369 0.321564 TAGTGCGCCATCTTGCTGTT 60.322 50.000 4.18 0.00 0.00 3.16
5555 8707 5.160607 ACTTTTATCACCTGAATCACCGA 57.839 39.130 0.00 0.00 0.00 4.69
5606 8825 4.535526 AGTTCAATAAATGTGGGTTGCC 57.464 40.909 0.00 0.00 0.00 4.52
5614 8833 9.647918 TCAATAAATGTGGGTTGCCTAATATAA 57.352 29.630 0.00 0.00 0.00 0.98
5709 8928 5.627499 TTTTCTTACAACTGCAGGCATAG 57.373 39.130 19.93 8.56 0.00 2.23
5805 9024 2.610232 CCGTCAAAATTGCCTTTCAGGG 60.610 50.000 0.00 0.00 35.37 4.45
5807 9026 3.056607 CGTCAAAATTGCCTTTCAGGGAT 60.057 43.478 0.00 0.00 34.92 3.85
5831 9050 1.072173 ACCAGTTGTGACAGCTGCATA 59.928 47.619 21.86 8.53 40.50 3.14
5832 9051 2.153645 CCAGTTGTGACAGCTGCATAA 58.846 47.619 21.86 14.10 40.50 1.90
5857 9076 6.619801 AGCTACACTTTCTGTTTTGTAAGG 57.380 37.500 0.00 0.00 33.91 2.69
5870 9089 6.843752 TGTTTTGTAAGGGGAATACTGAAGA 58.156 36.000 0.00 0.00 0.00 2.87
5871 9090 6.940298 TGTTTTGTAAGGGGAATACTGAAGAG 59.060 38.462 0.00 0.00 0.00 2.85
5889 9108 2.425312 AGAGTGAGTAGATGCAGAACGG 59.575 50.000 0.00 0.00 0.00 4.44
5921 9140 5.417811 ACATTCATGTTGTTTTGCACTTCA 58.582 33.333 0.00 0.00 37.90 3.02
6023 9242 2.957402 TGGCACTTCATCCTTTGAGT 57.043 45.000 0.00 0.00 35.27 3.41
6130 9349 7.638444 TCTACAACTGGAATGGGATAATTTGA 58.362 34.615 0.00 0.00 0.00 2.69
6175 9394 4.664677 GGTGTCTGCGCGTGTCCT 62.665 66.667 8.43 0.00 0.00 3.85
6197 9416 1.904287 TTGAACCCTCATTTGTCCGG 58.096 50.000 0.00 0.00 0.00 5.14
6224 9443 0.458370 GCCATGTCGCCCAAATTGTC 60.458 55.000 0.00 0.00 0.00 3.18
6225 9444 0.173255 CCATGTCGCCCAAATTGTCC 59.827 55.000 0.00 0.00 0.00 4.02
6226 9445 0.887247 CATGTCGCCCAAATTGTCCA 59.113 50.000 0.00 0.00 0.00 4.02
6227 9446 1.135315 CATGTCGCCCAAATTGTCCAG 60.135 52.381 0.00 0.00 0.00 3.86
6228 9447 0.179004 TGTCGCCCAAATTGTCCAGT 60.179 50.000 0.00 0.00 0.00 4.00
6229 9448 0.521735 GTCGCCCAAATTGTCCAGTC 59.478 55.000 0.00 0.00 0.00 3.51
6230 9449 0.109532 TCGCCCAAATTGTCCAGTCA 59.890 50.000 0.00 0.00 0.00 3.41
6231 9450 0.958091 CGCCCAAATTGTCCAGTCAA 59.042 50.000 0.00 0.00 0.00 3.18
6232 9451 1.339610 CGCCCAAATTGTCCAGTCAAA 59.660 47.619 0.00 0.00 0.00 2.69
6233 9452 2.029110 CGCCCAAATTGTCCAGTCAAAT 60.029 45.455 0.00 0.00 0.00 2.32
6234 9453 3.328505 GCCCAAATTGTCCAGTCAAATG 58.671 45.455 0.00 0.00 0.00 2.32
6235 9454 3.328505 CCCAAATTGTCCAGTCAAATGC 58.671 45.455 0.00 0.00 0.00 3.56
6236 9455 3.328505 CCAAATTGTCCAGTCAAATGCC 58.671 45.455 0.00 0.00 0.00 4.40
6237 9456 3.007182 CCAAATTGTCCAGTCAAATGCCT 59.993 43.478 0.00 0.00 0.00 4.75
6238 9457 4.220382 CCAAATTGTCCAGTCAAATGCCTA 59.780 41.667 0.00 0.00 0.00 3.93
6239 9458 5.105228 CCAAATTGTCCAGTCAAATGCCTAT 60.105 40.000 0.00 0.00 0.00 2.57
6240 9459 5.587388 AATTGTCCAGTCAAATGCCTATG 57.413 39.130 0.00 0.00 0.00 2.23
6241 9460 3.998913 TGTCCAGTCAAATGCCTATGA 57.001 42.857 0.00 0.00 0.00 2.15
6242 9461 4.508551 TGTCCAGTCAAATGCCTATGAT 57.491 40.909 0.00 0.00 0.00 2.45
6243 9462 4.858850 TGTCCAGTCAAATGCCTATGATT 58.141 39.130 0.00 0.00 0.00 2.57
6244 9463 4.641541 TGTCCAGTCAAATGCCTATGATTG 59.358 41.667 0.00 0.00 34.25 2.67
6245 9464 4.579454 CCAGTCAAATGCCTATGATTGG 57.421 45.455 8.98 8.98 43.90 3.16
6246 9465 3.243636 CCAGTCAAATGCCTATGATTGGC 60.244 47.826 11.02 11.02 43.55 4.52
6251 9470 2.836154 GCCTATGATTGGCGGGGA 59.164 61.111 1.46 0.00 41.03 4.81
6252 9471 1.380302 GCCTATGATTGGCGGGGAT 59.620 57.895 1.46 0.00 41.03 3.85
6253 9472 0.962356 GCCTATGATTGGCGGGGATG 60.962 60.000 1.46 0.00 41.03 3.51
6254 9473 0.322816 CCTATGATTGGCGGGGATGG 60.323 60.000 0.00 0.00 0.00 3.51
6255 9474 0.692476 CTATGATTGGCGGGGATGGA 59.308 55.000 0.00 0.00 0.00 3.41
6256 9475 0.692476 TATGATTGGCGGGGATGGAG 59.308 55.000 0.00 0.00 0.00 3.86
6257 9476 1.061905 ATGATTGGCGGGGATGGAGA 61.062 55.000 0.00 0.00 0.00 3.71
6258 9477 1.072159 GATTGGCGGGGATGGAGAG 59.928 63.158 0.00 0.00 0.00 3.20
6259 9478 1.384502 ATTGGCGGGGATGGAGAGA 60.385 57.895 0.00 0.00 0.00 3.10
6260 9479 0.988145 ATTGGCGGGGATGGAGAGAA 60.988 55.000 0.00 0.00 0.00 2.87
6261 9480 1.204786 TTGGCGGGGATGGAGAGAAA 61.205 55.000 0.00 0.00 0.00 2.52
6262 9481 1.147153 GGCGGGGATGGAGAGAAAG 59.853 63.158 0.00 0.00 0.00 2.62
6263 9482 1.338136 GGCGGGGATGGAGAGAAAGA 61.338 60.000 0.00 0.00 0.00 2.52
6264 9483 0.105778 GCGGGGATGGAGAGAAAGAG 59.894 60.000 0.00 0.00 0.00 2.85
6265 9484 1.781786 CGGGGATGGAGAGAAAGAGA 58.218 55.000 0.00 0.00 0.00 3.10
6266 9485 1.686052 CGGGGATGGAGAGAAAGAGAG 59.314 57.143 0.00 0.00 0.00 3.20
6267 9486 2.688214 CGGGGATGGAGAGAAAGAGAGA 60.688 54.545 0.00 0.00 0.00 3.10
6268 9487 3.379452 GGGGATGGAGAGAAAGAGAGAA 58.621 50.000 0.00 0.00 0.00 2.87
6269 9488 3.387699 GGGGATGGAGAGAAAGAGAGAAG 59.612 52.174 0.00 0.00 0.00 2.85
6270 9489 4.285863 GGGATGGAGAGAAAGAGAGAAGA 58.714 47.826 0.00 0.00 0.00 2.87
6271 9490 4.714308 GGGATGGAGAGAAAGAGAGAAGAA 59.286 45.833 0.00 0.00 0.00 2.52
6272 9491 5.366477 GGGATGGAGAGAAAGAGAGAAGAAT 59.634 44.000 0.00 0.00 0.00 2.40
6273 9492 6.282930 GGATGGAGAGAAAGAGAGAAGAATG 58.717 44.000 0.00 0.00 0.00 2.67
6274 9493 6.098124 GGATGGAGAGAAAGAGAGAAGAATGA 59.902 42.308 0.00 0.00 0.00 2.57
6275 9494 6.924913 TGGAGAGAAAGAGAGAAGAATGAA 57.075 37.500 0.00 0.00 0.00 2.57
6276 9495 7.493499 TGGAGAGAAAGAGAGAAGAATGAAT 57.507 36.000 0.00 0.00 0.00 2.57
6277 9496 8.601047 TGGAGAGAAAGAGAGAAGAATGAATA 57.399 34.615 0.00 0.00 0.00 1.75
6278 9497 9.040259 TGGAGAGAAAGAGAGAAGAATGAATAA 57.960 33.333 0.00 0.00 0.00 1.40
6279 9498 9.883142 GGAGAGAAAGAGAGAAGAATGAATAAA 57.117 33.333 0.00 0.00 0.00 1.40
6298 9517 9.449719 TGAATAAAGAAAGAGATAAAGTGGTCC 57.550 33.333 0.00 0.00 0.00 4.46
6299 9518 8.494016 AATAAAGAAAGAGATAAAGTGGTCCG 57.506 34.615 0.00 0.00 0.00 4.79
6300 9519 4.473477 AGAAAGAGATAAAGTGGTCCGG 57.527 45.455 0.00 0.00 0.00 5.14
6301 9520 3.197983 AGAAAGAGATAAAGTGGTCCGGG 59.802 47.826 0.00 0.00 0.00 5.73
6302 9521 1.497161 AGAGATAAAGTGGTCCGGGG 58.503 55.000 0.00 0.00 0.00 5.73
6303 9522 1.201424 GAGATAAAGTGGTCCGGGGT 58.799 55.000 0.00 0.00 0.00 4.95
6304 9523 0.909623 AGATAAAGTGGTCCGGGGTG 59.090 55.000 0.00 0.00 0.00 4.61
6305 9524 0.107361 GATAAAGTGGTCCGGGGTGG 60.107 60.000 0.00 0.00 40.09 4.61
6339 9696 2.183409 GCGGATTGCCAGAACATGT 58.817 52.632 0.00 0.00 37.76 3.21
6342 9699 1.838112 GGATTGCCAGAACATGTCCA 58.162 50.000 0.00 0.00 0.00 4.02
6368 9725 2.619849 CCCTCATATCATCCCCACATGC 60.620 54.545 0.00 0.00 0.00 4.06
6371 9728 0.329261 ATATCATCCCCACATGCGGG 59.671 55.000 12.23 12.23 46.94 6.13
6378 9735 4.395519 CCACATGCGGGAGTTTGA 57.604 55.556 0.00 0.00 0.00 2.69
6379 9736 2.174334 CCACATGCGGGAGTTTGAG 58.826 57.895 0.00 0.00 0.00 3.02
6390 9815 1.349357 GGAGTTTGAGGCTCTCCTGTT 59.651 52.381 16.72 0.00 44.46 3.16
6391 9816 2.224646 GGAGTTTGAGGCTCTCCTGTTT 60.225 50.000 16.72 0.00 44.46 2.83
6415 9840 0.469917 CCTGTCCGCCCAGACATAAT 59.530 55.000 1.52 0.00 45.39 1.28
6416 9841 1.586422 CTGTCCGCCCAGACATAATG 58.414 55.000 0.00 0.00 45.39 1.90
6417 9842 1.138859 CTGTCCGCCCAGACATAATGA 59.861 52.381 0.00 0.00 45.39 2.57
6418 9843 1.138859 TGTCCGCCCAGACATAATGAG 59.861 52.381 0.00 0.00 41.78 2.90
6419 9844 0.758734 TCCGCCCAGACATAATGAGG 59.241 55.000 0.00 0.00 0.00 3.86
6420 9845 0.250467 CCGCCCAGACATAATGAGGG 60.250 60.000 0.00 0.00 42.55 4.30
6423 9848 2.267174 CCCAGACATAATGAGGGCAG 57.733 55.000 0.00 0.00 31.81 4.85
6424 9849 1.492176 CCCAGACATAATGAGGGCAGT 59.508 52.381 0.00 0.00 31.81 4.40
6425 9850 2.092212 CCCAGACATAATGAGGGCAGTT 60.092 50.000 0.00 0.00 31.81 3.16
6426 9851 3.624777 CCAGACATAATGAGGGCAGTTT 58.375 45.455 0.00 0.00 0.00 2.66
6427 9852 3.379372 CCAGACATAATGAGGGCAGTTTG 59.621 47.826 0.00 0.00 0.00 2.93
6428 9853 4.264253 CAGACATAATGAGGGCAGTTTGA 58.736 43.478 0.00 0.00 0.00 2.69
6429 9854 4.334759 CAGACATAATGAGGGCAGTTTGAG 59.665 45.833 0.00 0.00 0.00 3.02
6430 9855 3.624777 ACATAATGAGGGCAGTTTGAGG 58.375 45.455 0.00 0.00 0.00 3.86
6431 9856 2.806945 TAATGAGGGCAGTTTGAGGG 57.193 50.000 0.00 0.00 0.00 4.30
6432 9857 0.040204 AATGAGGGCAGTTTGAGGGG 59.960 55.000 0.00 0.00 0.00 4.79
6433 9858 1.142688 ATGAGGGCAGTTTGAGGGGT 61.143 55.000 0.00 0.00 0.00 4.95
6434 9859 1.002011 GAGGGCAGTTTGAGGGGTC 60.002 63.158 0.00 0.00 0.00 4.46
6435 9860 1.774217 AGGGCAGTTTGAGGGGTCA 60.774 57.895 0.00 0.00 0.00 4.02
6436 9861 1.303643 GGGCAGTTTGAGGGGTCAG 60.304 63.158 0.00 0.00 0.00 3.51
6437 9862 1.303643 GGCAGTTTGAGGGGTCAGG 60.304 63.158 0.00 0.00 0.00 3.86
6438 9863 1.456287 GCAGTTTGAGGGGTCAGGT 59.544 57.895 0.00 0.00 0.00 4.00
6439 9864 0.178990 GCAGTTTGAGGGGTCAGGTT 60.179 55.000 0.00 0.00 0.00 3.50
6440 9865 1.609208 CAGTTTGAGGGGTCAGGTTG 58.391 55.000 0.00 0.00 0.00 3.77
6441 9866 1.133792 CAGTTTGAGGGGTCAGGTTGT 60.134 52.381 0.00 0.00 0.00 3.32
6442 9867 2.105821 CAGTTTGAGGGGTCAGGTTGTA 59.894 50.000 0.00 0.00 0.00 2.41
6443 9868 2.372172 AGTTTGAGGGGTCAGGTTGTAG 59.628 50.000 0.00 0.00 0.00 2.74
6444 9869 2.370849 GTTTGAGGGGTCAGGTTGTAGA 59.629 50.000 0.00 0.00 0.00 2.59
6445 9870 2.642171 TGAGGGGTCAGGTTGTAGAT 57.358 50.000 0.00 0.00 0.00 1.98
6446 9871 2.187958 TGAGGGGTCAGGTTGTAGATG 58.812 52.381 0.00 0.00 0.00 2.90
6447 9872 0.912486 AGGGGTCAGGTTGTAGATGC 59.088 55.000 0.00 0.00 0.00 3.91
6448 9873 0.912486 GGGGTCAGGTTGTAGATGCT 59.088 55.000 0.00 0.00 0.00 3.79
6449 9874 1.134371 GGGGTCAGGTTGTAGATGCTC 60.134 57.143 0.00 0.00 0.00 4.26
6450 9875 1.134371 GGGTCAGGTTGTAGATGCTCC 60.134 57.143 0.00 0.00 0.00 4.70
6451 9876 1.555075 GGTCAGGTTGTAGATGCTCCA 59.445 52.381 0.00 0.00 0.00 3.86
6519 9944 3.644738 TCTCAGAAGGGTAAAACGGACTT 59.355 43.478 0.00 0.00 0.00 3.01
6531 9956 7.040478 GGGTAAAACGGACTTAAAACTATTGGT 60.040 37.037 0.00 0.00 0.00 3.67
6721 10146 9.339492 GAACTCTGAAAATCAGCTTCATAAAAG 57.661 33.333 2.48 0.00 43.95 2.27
6722 10147 7.311408 ACTCTGAAAATCAGCTTCATAAAAGC 58.689 34.615 2.48 1.57 43.95 3.51
6757 10182 4.761227 CCTTTGAAATTTTGTTGATGGGGG 59.239 41.667 0.00 0.00 0.00 5.40
6776 10201 1.280421 GGAAGGTGCTGACCATCTCTT 59.720 52.381 0.00 0.00 45.98 2.85
6821 10247 2.358957 TCACACACAGCCATGAATAGC 58.641 47.619 0.00 0.00 0.00 2.97
6839 10265 2.089980 AGCATGACTAAGCAAAGCTGG 58.910 47.619 0.00 0.00 39.62 4.85
6859 10285 2.027192 GGACATAGTGACTTGCTGGGAA 60.027 50.000 0.00 0.00 0.00 3.97
6972 10398 4.214119 CGTTGACATGATTCTTTCCACTGT 59.786 41.667 0.00 0.00 0.00 3.55
7091 10517 4.264253 CCTGTGAAGATATGGAAGCACAA 58.736 43.478 0.00 0.00 36.04 3.33
7143 10569 4.350816 ACTCTGCCCATACTTTGCCATATA 59.649 41.667 0.00 0.00 0.00 0.86
7190 10616 2.565834 TCTTGGTAGTACTTGCCCTGAC 59.434 50.000 0.00 0.00 0.00 3.51
7360 10786 2.202703 GTACGTAGGTGGCAGCCG 60.203 66.667 13.95 13.18 0.00 5.52
7440 10866 6.134535 TGTGGTGTTCCTTTATCTAACCAT 57.865 37.500 0.00 0.00 38.41 3.55
7470 10896 5.396484 CATCATCGATTCAGTGTGCTTTTT 58.604 37.500 0.00 0.00 0.00 1.94
7471 10897 6.403527 CCATCATCGATTCAGTGTGCTTTTTA 60.404 38.462 0.00 0.00 0.00 1.52
7472 10898 6.169419 TCATCGATTCAGTGTGCTTTTTAG 57.831 37.500 0.00 0.00 0.00 1.85
7473 10899 4.404507 TCGATTCAGTGTGCTTTTTAGC 57.595 40.909 0.00 0.00 0.00 3.09
7474 10900 3.812609 TCGATTCAGTGTGCTTTTTAGCA 59.187 39.130 0.00 0.00 43.22 3.49
7639 11078 6.438186 TCATGAGGATTCATATAACCTGCA 57.562 37.500 0.00 0.00 42.12 4.41
7690 11129 9.944663 CATATGCGTAACAAATAACCTTTACAT 57.055 29.630 0.00 0.00 0.00 2.29
7699 11138 7.956558 ACAAATAACCTTTACATTACGTCTCG 58.043 34.615 0.00 0.00 0.00 4.04
7720 11159 4.058817 CGCACTTCCTCTAACAAGTTCTT 58.941 43.478 0.00 0.00 30.06 2.52
7721 11160 4.511826 CGCACTTCCTCTAACAAGTTCTTT 59.488 41.667 0.00 0.00 30.06 2.52
7722 11161 5.007724 CGCACTTCCTCTAACAAGTTCTTTT 59.992 40.000 0.00 0.00 30.06 2.27
7752 11191 2.921972 AAATGCCCTTGGGCGCAA 60.922 55.556 23.81 16.06 38.75 4.85
7754 11193 0.975040 AAATGCCCTTGGGCGCAATA 60.975 50.000 23.81 8.07 38.75 1.90
7798 11237 7.757941 TTACATTGAAGATGATGTGTGGAAA 57.242 32.000 0.00 0.00 37.12 3.13
7801 11240 7.673180 ACATTGAAGATGATGTGTGGAAAAAT 58.327 30.769 0.00 0.00 35.31 1.82
7812 11251 6.569179 TGTGTGGAAAAATAAAGCTAGGAC 57.431 37.500 0.00 0.00 0.00 3.85
7836 11275 4.411256 TCACCGTCCTCAAAAACTACTT 57.589 40.909 0.00 0.00 0.00 2.24
7841 11280 4.262506 CCGTCCTCAAAAACTACTTCCTCT 60.263 45.833 0.00 0.00 0.00 3.69
7845 11284 6.542735 GTCCTCAAAAACTACTTCCTCTGTTT 59.457 38.462 0.00 0.00 34.59 2.83
7847 11286 6.542370 CCTCAAAAACTACTTCCTCTGTTTCA 59.458 38.462 0.00 0.00 32.35 2.69
7858 11297 8.974060 ACTTCCTCTGTTTCAAAATAAGTGTA 57.026 30.769 0.00 0.00 0.00 2.90
7861 11300 9.567776 TTCCTCTGTTTCAAAATAAGTGTATCA 57.432 29.630 0.00 0.00 0.00 2.15
7862 11301 9.567776 TCCTCTGTTTCAAAATAAGTGTATCAA 57.432 29.630 0.00 0.00 0.00 2.57
7863 11302 9.612620 CCTCTGTTTCAAAATAAGTGTATCAAC 57.387 33.333 0.00 0.00 0.00 3.18
7945 11452 9.315525 GAGGGAGTACAACTTTAGAATCATAAC 57.684 37.037 0.00 0.00 0.00 1.89
7967 11474 4.520492 ACCATGCCTAGCTAAATTATGTGC 59.480 41.667 0.00 0.00 0.00 4.57
7968 11475 4.520111 CCATGCCTAGCTAAATTATGTGCA 59.480 41.667 0.00 0.00 0.00 4.57
7979 11486 4.670896 AATTATGTGCAACCCTATTGGC 57.329 40.909 0.00 0.00 37.83 4.52
7991 11498 2.696707 CCCTATTGGCGTTACTAGGACA 59.303 50.000 0.00 0.00 33.93 4.02
7998 11505 1.736032 GCGTTACTAGGACAGTGCTGG 60.736 57.143 4.51 4.09 38.24 4.85
8042 12573 4.523943 TGTTGCTTGCTGGAAACAATCTAT 59.476 37.500 1.17 0.00 42.06 1.98
8076 12660 6.688578 TGAAAGCTAACTGTACCTAGTCTTG 58.311 40.000 0.00 0.00 0.00 3.02
8077 12661 6.267014 TGAAAGCTAACTGTACCTAGTCTTGT 59.733 38.462 0.00 0.00 0.00 3.16
8078 12662 6.667558 AAGCTAACTGTACCTAGTCTTGTT 57.332 37.500 0.00 0.00 0.00 2.83
8079 12663 6.026947 AGCTAACTGTACCTAGTCTTGTTG 57.973 41.667 0.00 0.00 0.00 3.33
8081 12665 4.957684 AACTGTACCTAGTCTTGTTGCT 57.042 40.909 0.00 0.00 0.00 3.91
8082 12666 4.957684 ACTGTACCTAGTCTTGTTGCTT 57.042 40.909 0.00 0.00 0.00 3.91
8097 12681 3.132646 TGTTGCTTGCTGGAAACAATCTT 59.867 39.130 1.17 0.00 42.06 2.40
8108 12692 6.571150 GCTGGAAACAATCTTCAAGTATTGCT 60.571 38.462 8.61 0.00 43.74 3.91
8111 12695 7.446931 TGGAAACAATCTTCAAGTATTGCTGTA 59.553 33.333 8.61 0.00 42.02 2.74
8123 12707 0.034756 TTGCTGTAGCCGAGCTCAAA 59.965 50.000 15.40 0.00 40.44 2.69
8124 12708 0.034756 TGCTGTAGCCGAGCTCAAAA 59.965 50.000 15.40 0.00 40.44 2.44
8125 12709 0.444260 GCTGTAGCCGAGCTCAAAAC 59.556 55.000 15.40 6.54 40.44 2.43
8126 12710 1.941668 GCTGTAGCCGAGCTCAAAACT 60.942 52.381 15.40 7.24 40.44 2.66
8127 12711 2.417719 CTGTAGCCGAGCTCAAAACTT 58.582 47.619 15.40 0.00 40.44 2.66
8128 12712 2.413453 CTGTAGCCGAGCTCAAAACTTC 59.587 50.000 15.40 3.56 40.44 3.01
8129 12713 2.224185 TGTAGCCGAGCTCAAAACTTCA 60.224 45.455 15.40 6.08 40.44 3.02
8130 12714 1.967319 AGCCGAGCTCAAAACTTCAA 58.033 45.000 15.40 0.00 30.62 2.69
8131 12715 1.876156 AGCCGAGCTCAAAACTTCAAG 59.124 47.619 15.40 0.00 30.62 3.02
8132 12716 1.664302 GCCGAGCTCAAAACTTCAAGC 60.664 52.381 15.40 0.00 34.95 4.01
8149 12733 4.847633 TCAAGCTCAAAACTTCATTCACG 58.152 39.130 0.00 0.00 0.00 4.35
8151 12735 2.030805 AGCTCAAAACTTCATTCACGCC 60.031 45.455 0.00 0.00 0.00 5.68
8199 12783 7.935755 CAGTGAATTAGACTCCCATGATAACAT 59.064 37.037 0.00 0.00 37.19 2.71
8200 12784 8.153550 AGTGAATTAGACTCCCATGATAACATC 58.846 37.037 0.00 0.00 34.15 3.06
8201 12785 7.116948 GTGAATTAGACTCCCATGATAACATCG 59.883 40.741 0.00 0.00 34.15 3.84
8284 12868 7.041848 TGTGCTAGCATCATACACATTATTCAC 60.042 37.037 22.51 1.39 36.39 3.18
8312 12896 2.367202 GCCACCTGCTACTGCCCTA 61.367 63.158 0.00 0.00 38.71 3.53
8355 12939 1.612146 TGCTCCCGACCCATCTTGA 60.612 57.895 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.918810 AAGAAAACAAAAGATGCGGAGT 57.081 36.364 0.00 0.00 0.00 3.85
75 76 4.285292 CAATCGAGGAAACAATATGCAGC 58.715 43.478 0.00 0.00 0.00 5.25
82 83 1.272425 TGGCCCAATCGAGGAAACAAT 60.272 47.619 0.00 0.00 0.00 2.71
85 86 1.644786 CGTGGCCCAATCGAGGAAAC 61.645 60.000 0.00 0.00 0.00 2.78
186 187 2.254546 TGAGGCACGATGAAGTTTGT 57.745 45.000 0.00 0.00 0.00 2.83
197 198 1.669115 CAGACCCAGTTGAGGCACG 60.669 63.158 0.00 0.00 0.00 5.34
199 200 0.843309 TTTCAGACCCAGTTGAGGCA 59.157 50.000 0.00 0.00 0.00 4.75
261 262 5.013258 AGGGAGGGTGAGGTTATACTATC 57.987 47.826 0.00 0.00 0.00 2.08
269 270 1.555058 GGTTCTAGGGAGGGTGAGGTT 60.555 57.143 0.00 0.00 0.00 3.50
279 280 4.733077 TTGATGGTTTTGGTTCTAGGGA 57.267 40.909 0.00 0.00 0.00 4.20
316 317 5.700402 AGTGGATCAGTAGCTGGTAAATT 57.300 39.130 0.00 0.00 31.51 1.82
318 319 5.720041 ACTTAGTGGATCAGTAGCTGGTAAA 59.280 40.000 0.00 0.00 31.51 2.01
326 327 2.952978 AGCCGACTTAGTGGATCAGTAG 59.047 50.000 0.00 0.00 0.00 2.57
329 330 2.166459 TCAAGCCGACTTAGTGGATCAG 59.834 50.000 0.00 0.00 33.74 2.90
355 356 9.837681 TTATCATACTCATCCTACCCTTATTGA 57.162 33.333 0.00 0.00 0.00 2.57
365 366 7.937394 TCTTCTGACGTTATCATACTCATCCTA 59.063 37.037 0.00 0.00 36.48 2.94
385 386 2.738846 CGGGACTCATTGTGTTCTTCTG 59.261 50.000 0.00 0.00 0.00 3.02
393 394 1.734465 GCTTCTTCGGGACTCATTGTG 59.266 52.381 0.00 0.00 0.00 3.33
395 396 2.275318 GAGCTTCTTCGGGACTCATTG 58.725 52.381 0.00 0.00 0.00 2.82
437 438 3.835395 GTCCTCTTTCTTTCCTGGAGAGA 59.165 47.826 12.58 12.58 36.77 3.10
445 446 3.948473 GCCCTATTGTCCTCTTTCTTTCC 59.052 47.826 0.00 0.00 0.00 3.13
448 449 2.092914 CCGCCCTATTGTCCTCTTTCTT 60.093 50.000 0.00 0.00 0.00 2.52
467 468 2.616376 TCCACTTGTTTCAATGTGTCCG 59.384 45.455 0.00 0.00 0.00 4.79
473 474 5.185668 TCATGTGTCCACTTGTTTCAATG 57.814 39.130 11.60 0.20 37.62 2.82
476 477 2.618241 GCTCATGTGTCCACTTGTTTCA 59.382 45.455 11.60 0.00 37.62 2.69
481 482 1.162698 CTGGCTCATGTGTCCACTTG 58.837 55.000 6.91 6.91 37.69 3.16
499 500 3.245229 TGCAACAGGGGACATTGTTATCT 60.245 43.478 0.00 0.00 35.93 1.98
512 513 1.210931 CTCATGCGTTGCAACAGGG 59.789 57.895 28.01 13.80 43.62 4.45
515 516 3.004210 ACAAATACTCATGCGTTGCAACA 59.996 39.130 28.01 11.26 43.62 3.33
523 524 5.043903 AGTACTAGCACAAATACTCATGCG 58.956 41.667 0.00 0.00 42.98 4.73
547 548 8.684520 GCTGATCGTAATGGTAGTATTATAGGT 58.315 37.037 0.00 0.00 0.00 3.08
548 549 8.136165 GGCTGATCGTAATGGTAGTATTATAGG 58.864 40.741 0.00 0.00 0.00 2.57
549 550 8.904834 AGGCTGATCGTAATGGTAGTATTATAG 58.095 37.037 0.00 0.00 0.00 1.31
550 551 8.818622 AGGCTGATCGTAATGGTAGTATTATA 57.181 34.615 0.00 0.00 0.00 0.98
551 552 7.396339 TGAGGCTGATCGTAATGGTAGTATTAT 59.604 37.037 0.00 0.00 0.00 1.28
552 553 6.717997 TGAGGCTGATCGTAATGGTAGTATTA 59.282 38.462 0.00 0.00 0.00 0.98
553 554 5.538813 TGAGGCTGATCGTAATGGTAGTATT 59.461 40.000 0.00 0.00 0.00 1.89
554 555 5.077564 TGAGGCTGATCGTAATGGTAGTAT 58.922 41.667 0.00 0.00 0.00 2.12
555 556 4.466827 TGAGGCTGATCGTAATGGTAGTA 58.533 43.478 0.00 0.00 0.00 1.82
556 557 3.296854 TGAGGCTGATCGTAATGGTAGT 58.703 45.455 0.00 0.00 0.00 2.73
557 558 4.527509 ATGAGGCTGATCGTAATGGTAG 57.472 45.455 0.00 0.00 0.00 3.18
558 559 5.714806 TGATATGAGGCTGATCGTAATGGTA 59.285 40.000 0.00 0.00 0.00 3.25
559 560 4.528206 TGATATGAGGCTGATCGTAATGGT 59.472 41.667 0.00 0.00 0.00 3.55
560 561 5.077134 TGATATGAGGCTGATCGTAATGG 57.923 43.478 0.00 0.00 0.00 3.16
561 562 6.400409 CGTTTGATATGAGGCTGATCGTAATG 60.400 42.308 0.00 0.00 0.00 1.90
562 563 5.635280 CGTTTGATATGAGGCTGATCGTAAT 59.365 40.000 0.00 0.00 0.00 1.89
563 564 4.982295 CGTTTGATATGAGGCTGATCGTAA 59.018 41.667 0.00 0.00 0.00 3.18
564 565 4.546570 CGTTTGATATGAGGCTGATCGTA 58.453 43.478 0.00 0.00 0.00 3.43
565 566 3.384668 CGTTTGATATGAGGCTGATCGT 58.615 45.455 0.00 0.00 0.00 3.73
566 567 2.733552 CCGTTTGATATGAGGCTGATCG 59.266 50.000 0.00 0.00 0.00 3.69
567 568 3.070018 CCCGTTTGATATGAGGCTGATC 58.930 50.000 0.00 0.00 0.00 2.92
568 569 2.811873 GCCCGTTTGATATGAGGCTGAT 60.812 50.000 0.00 0.00 37.42 2.90
569 570 1.475034 GCCCGTTTGATATGAGGCTGA 60.475 52.381 0.00 0.00 37.42 4.26
570 571 0.947244 GCCCGTTTGATATGAGGCTG 59.053 55.000 0.00 0.00 37.42 4.85
571 572 0.839946 AGCCCGTTTGATATGAGGCT 59.160 50.000 0.00 0.00 45.72 4.58
572 573 2.543777 TAGCCCGTTTGATATGAGGC 57.456 50.000 0.00 0.00 40.79 4.70
573 574 4.821805 ACAAATAGCCCGTTTGATATGAGG 59.178 41.667 11.57 0.00 38.51 3.86
574 575 5.333339 CGACAAATAGCCCGTTTGATATGAG 60.333 44.000 11.57 0.00 38.51 2.90
575 576 4.509970 CGACAAATAGCCCGTTTGATATGA 59.490 41.667 11.57 0.00 38.51 2.15
576 577 4.272504 ACGACAAATAGCCCGTTTGATATG 59.727 41.667 11.57 3.21 38.51 1.78
577 578 4.448210 ACGACAAATAGCCCGTTTGATAT 58.552 39.130 11.57 0.00 38.51 1.63
578 579 3.864243 ACGACAAATAGCCCGTTTGATA 58.136 40.909 11.57 0.00 38.51 2.15
579 580 2.706890 ACGACAAATAGCCCGTTTGAT 58.293 42.857 11.57 0.00 38.51 2.57
580 581 2.172851 ACGACAAATAGCCCGTTTGA 57.827 45.000 11.57 0.00 38.51 2.69
581 582 2.981400 AACGACAAATAGCCCGTTTG 57.019 45.000 0.00 4.95 41.67 2.93
582 583 3.187022 GTGTAACGACAAATAGCCCGTTT 59.813 43.478 0.00 0.00 41.67 3.60
583 584 2.738314 GTGTAACGACAAATAGCCCGTT 59.262 45.455 0.00 0.00 45.50 4.44
584 585 2.340337 GTGTAACGACAAATAGCCCGT 58.660 47.619 0.00 0.00 37.31 5.28
585 586 1.662122 GGTGTAACGACAAATAGCCCG 59.338 52.381 0.00 0.00 37.31 6.13
586 587 1.662122 CGGTGTAACGACAAATAGCCC 59.338 52.381 0.00 0.00 37.31 5.19
587 588 1.662122 CCGGTGTAACGACAAATAGCC 59.338 52.381 0.00 0.00 37.31 3.93
588 589 2.340337 ACCGGTGTAACGACAAATAGC 58.660 47.619 6.12 0.00 37.31 2.97
589 590 3.859386 GGTACCGGTGTAACGACAAATAG 59.141 47.826 19.93 0.00 37.31 1.73
590 591 3.843999 GGTACCGGTGTAACGACAAATA 58.156 45.455 19.93 0.00 37.31 1.40
591 592 2.687370 GGTACCGGTGTAACGACAAAT 58.313 47.619 19.93 0.00 37.31 2.32
592 593 2.147436 GGTACCGGTGTAACGACAAA 57.853 50.000 19.93 0.00 37.31 2.83
593 594 3.883997 GGTACCGGTGTAACGACAA 57.116 52.632 19.93 0.00 37.31 3.18
605 606 1.442526 ATAGAGTGACGCCGGTACCG 61.443 60.000 27.68 27.68 39.44 4.02
606 607 0.743097 AATAGAGTGACGCCGGTACC 59.257 55.000 1.90 0.16 0.00 3.34
607 608 1.596464 CGAATAGAGTGACGCCGGTAC 60.596 57.143 1.90 0.00 0.00 3.34
608 609 0.659427 CGAATAGAGTGACGCCGGTA 59.341 55.000 1.90 0.00 0.00 4.02
609 610 1.432251 CGAATAGAGTGACGCCGGT 59.568 57.895 1.90 0.00 0.00 5.28
610 611 1.944676 GCGAATAGAGTGACGCCGG 60.945 63.158 0.00 0.00 44.27 6.13
611 612 3.601981 GCGAATAGAGTGACGCCG 58.398 61.111 0.00 0.00 44.27 6.46
614 615 0.924090 GCCAAGCGAATAGAGTGACG 59.076 55.000 0.00 0.00 0.00 4.35
633 634 4.662961 TGTGTGCGGTGAGAGGCG 62.663 66.667 0.00 0.00 0.00 5.52
634 635 3.044305 GTGTGTGCGGTGAGAGGC 61.044 66.667 0.00 0.00 0.00 4.70
635 636 2.357517 GGTGTGTGCGGTGAGAGG 60.358 66.667 0.00 0.00 0.00 3.69
636 637 2.492449 ATCGGTGTGTGCGGTGAGAG 62.492 60.000 0.00 0.00 0.00 3.20
637 638 2.094757 AATCGGTGTGTGCGGTGAGA 62.095 55.000 0.00 0.00 0.00 3.27
638 639 1.227999 AAATCGGTGTGTGCGGTGAG 61.228 55.000 0.00 0.00 0.00 3.51
639 640 1.227704 AAATCGGTGTGTGCGGTGA 60.228 52.632 0.00 0.00 0.00 4.02
640 641 1.082169 CAAATCGGTGTGTGCGGTG 60.082 57.895 0.00 0.00 0.00 4.94
641 642 2.903547 GCAAATCGGTGTGTGCGGT 61.904 57.895 0.00 0.00 0.00 5.68
642 643 2.126888 GCAAATCGGTGTGTGCGG 60.127 61.111 0.00 0.00 0.00 5.69
643 644 0.387112 AATGCAAATCGGTGTGTGCG 60.387 50.000 0.00 0.00 39.92 5.34
644 645 1.782044 AAATGCAAATCGGTGTGTGC 58.218 45.000 0.00 0.00 37.51 4.57
645 646 3.919804 CCTTAAATGCAAATCGGTGTGTG 59.080 43.478 0.00 0.00 0.00 3.82
648 649 4.618227 GCTTCCTTAAATGCAAATCGGTGT 60.618 41.667 0.00 0.00 0.00 4.16
677 678 3.199442 TCTTTGGTCCTGGAGTCCATA 57.801 47.619 13.56 0.69 30.82 2.74
684 685 0.321671 CGAGCTTCTTTGGTCCTGGA 59.678 55.000 0.00 0.00 0.00 3.86
691 692 0.784778 GACACGTCGAGCTTCTTTGG 59.215 55.000 0.00 0.00 0.00 3.28
693 694 2.440539 ATGACACGTCGAGCTTCTTT 57.559 45.000 0.00 0.00 0.00 2.52
699 700 0.389948 AAGGGAATGACACGTCGAGC 60.390 55.000 0.00 0.00 0.00 5.03
716 717 1.500396 GCCCGCCAGAACGTAAAAG 59.500 57.895 0.00 0.00 0.00 2.27
748 2333 2.434884 CACGCGAGGATTGGCTGT 60.435 61.111 15.93 0.00 0.00 4.40
777 2363 2.367567 CCCGGTACACATAGCAATACCT 59.632 50.000 0.00 0.00 35.83 3.08
950 2538 4.767255 GCACCTCCCCTGCACGAG 62.767 72.222 0.00 0.00 34.56 4.18
1183 2771 2.722201 CCTTTCCCCTCCTCGTCCG 61.722 68.421 0.00 0.00 0.00 4.79
1186 2774 3.009714 GGCCTTTCCCCTCCTCGT 61.010 66.667 0.00 0.00 0.00 4.18
1222 2811 3.890756 TGCTGAATCAGAGGAAAAGCAAA 59.109 39.130 15.38 0.00 35.30 3.68
1367 2956 2.474410 ATCCAACCAAACGGAGACTC 57.526 50.000 0.00 0.00 33.97 3.36
1376 2965 8.851541 ACTAGAAACGTTTATATCCAACCAAA 57.148 30.769 14.65 0.00 0.00 3.28
1377 2966 8.095792 TGACTAGAAACGTTTATATCCAACCAA 58.904 33.333 14.65 0.00 0.00 3.67
1378 2967 7.613585 TGACTAGAAACGTTTATATCCAACCA 58.386 34.615 14.65 4.55 0.00 3.67
1379 2968 7.763071 ACTGACTAGAAACGTTTATATCCAACC 59.237 37.037 14.65 0.00 0.00 3.77
1380 2969 8.699283 ACTGACTAGAAACGTTTATATCCAAC 57.301 34.615 14.65 0.00 0.00 3.77
1381 2970 9.715121 AAACTGACTAGAAACGTTTATATCCAA 57.285 29.630 14.65 1.08 0.00 3.53
1382 2971 9.362539 GAAACTGACTAGAAACGTTTATATCCA 57.637 33.333 14.65 13.61 0.00 3.41
1383 2972 8.529911 CGAAACTGACTAGAAACGTTTATATCC 58.470 37.037 14.65 9.95 0.00 2.59
1384 2973 9.070149 ACGAAACTGACTAGAAACGTTTATATC 57.930 33.333 14.65 13.87 0.00 1.63
1385 2974 8.857216 CACGAAACTGACTAGAAACGTTTATAT 58.143 33.333 14.65 5.84 31.66 0.86
1386 2975 7.148918 GCACGAAACTGACTAGAAACGTTTATA 60.149 37.037 14.65 14.38 31.66 0.98
1387 2976 6.346359 GCACGAAACTGACTAGAAACGTTTAT 60.346 38.462 14.65 13.94 31.66 1.40
1388 2977 5.051508 GCACGAAACTGACTAGAAACGTTTA 60.052 40.000 14.65 0.00 31.66 2.01
1389 2978 4.260091 GCACGAAACTGACTAGAAACGTTT 60.260 41.667 14.57 14.57 31.66 3.60
1390 2979 3.244579 GCACGAAACTGACTAGAAACGTT 59.755 43.478 0.00 0.00 31.66 3.99
1391 2980 2.793232 GCACGAAACTGACTAGAAACGT 59.207 45.455 0.00 0.00 33.08 3.99
1392 2981 3.050619 AGCACGAAACTGACTAGAAACG 58.949 45.455 0.00 0.00 0.00 3.60
1393 2982 4.049186 TGAGCACGAAACTGACTAGAAAC 58.951 43.478 0.00 0.00 0.00 2.78
1403 2992 0.673644 CCCCGATTGAGCACGAAACT 60.674 55.000 0.00 0.00 0.00 2.66
1569 3158 1.622811 ACTGCCCTTCTCAGAAGACAG 59.377 52.381 24.89 24.89 35.61 3.51
1635 3224 8.567285 ACATTAACAGATAAGTGAGGGAAAAG 57.433 34.615 0.00 0.00 0.00 2.27
1638 3227 8.375493 ACTACATTAACAGATAAGTGAGGGAA 57.625 34.615 0.00 0.00 0.00 3.97
1724 3316 5.065859 AGTGTCATAATCTCTCGTGTCTGAG 59.934 44.000 0.00 0.00 37.33 3.35
1772 3364 2.031163 GCTCCCTTGCGTCACAGT 59.969 61.111 0.00 0.00 0.00 3.55
1846 3438 7.117523 CGAATCCTGAAGAGAGCCAATATAAAG 59.882 40.741 0.00 0.00 0.00 1.85
1926 3518 4.163078 AGCTACCACATAGTTGAGCATTCT 59.837 41.667 0.00 0.00 32.90 2.40
1928 3520 4.494091 AGCTACCACATAGTTGAGCATT 57.506 40.909 0.00 0.00 32.90 3.56
2072 3665 0.110010 GCGCAGAAACTGGAAGCTTC 60.110 55.000 18.54 18.54 39.28 3.86
2210 3803 1.077501 ACCATCACATCGGGCAAGG 60.078 57.895 0.00 0.00 0.00 3.61
2255 3848 7.999679 TGGATGCTGTCATAAAAATTAGAAGG 58.000 34.615 0.00 0.00 31.96 3.46
2256 3849 8.896744 TCTGGATGCTGTCATAAAAATTAGAAG 58.103 33.333 0.00 0.00 31.96 2.85
2294 3888 0.950836 TCCAAAACAGGCACACATCG 59.049 50.000 0.00 0.00 0.00 3.84
2301 3895 0.968405 GAGGCATTCCAAAACAGGCA 59.032 50.000 0.00 0.00 33.74 4.75
2327 3921 0.729140 CAAAAGCCATTCACGCCGTC 60.729 55.000 0.00 0.00 0.00 4.79
2416 4010 3.941657 GAGGTCTCACGTGCTGGCC 62.942 68.421 19.64 19.64 0.00 5.36
2417 4011 2.433318 GAGGTCTCACGTGCTGGC 60.433 66.667 11.67 7.58 0.00 4.85
2418 4012 1.214062 GAGAGGTCTCACGTGCTGG 59.786 63.158 11.67 3.64 42.42 4.85
2419 4013 1.214062 GGAGAGGTCTCACGTGCTG 59.786 63.158 11.67 6.36 44.60 4.41
2475 4069 6.549736 GGTAATTAGGCAAAGTGGGATTACAT 59.450 38.462 0.00 0.00 32.79 2.29
2521 4125 7.384115 CCCATACAACACTTTAGGATACGTATG 59.616 40.741 13.97 0.00 46.39 2.39
2535 4139 5.724854 AGTTGTAGGTATCCCATACAACACT 59.275 40.000 23.49 8.49 45.58 3.55
2738 4350 1.408683 CCGGCAATGAGATCCTTTGGA 60.409 52.381 0.00 0.00 35.55 3.53
2782 4394 4.082665 ACAGCCATGGATGATAAGTCAG 57.917 45.455 35.60 6.83 37.87 3.51
2792 4410 1.837439 TCTTTCGGTACAGCCATGGAT 59.163 47.619 18.40 6.18 36.97 3.41
2831 4449 0.039256 GTCGCACGGTTACCACTACA 60.039 55.000 1.13 0.00 0.00 2.74
2927 4553 8.615878 ACATGGCGTATTAATTAGCTGAATTA 57.384 30.769 0.00 0.57 38.70 1.40
2928 4554 7.510549 ACATGGCGTATTAATTAGCTGAATT 57.489 32.000 0.00 1.56 40.90 2.17
2929 4555 7.510549 AACATGGCGTATTAATTAGCTGAAT 57.489 32.000 0.00 0.00 0.00 2.57
2930 4556 6.292649 CGAACATGGCGTATTAATTAGCTGAA 60.293 38.462 0.00 0.00 0.00 3.02
2931 4557 5.176774 CGAACATGGCGTATTAATTAGCTGA 59.823 40.000 0.00 0.00 0.00 4.26
2932 4558 5.050363 ACGAACATGGCGTATTAATTAGCTG 60.050 40.000 13.20 8.02 40.65 4.24
2933 4559 5.054477 ACGAACATGGCGTATTAATTAGCT 58.946 37.500 13.20 0.00 40.65 3.32
2934 4560 5.176958 AGACGAACATGGCGTATTAATTAGC 59.823 40.000 14.52 0.00 42.77 3.09
2935 4561 6.764877 AGACGAACATGGCGTATTAATTAG 57.235 37.500 14.52 0.00 42.77 1.73
2943 4569 1.402968 GTCCTAGACGAACATGGCGTA 59.597 52.381 14.52 1.69 42.77 4.42
3157 4809 3.565307 TCAACACATTCCTTTCCTGCTT 58.435 40.909 0.00 0.00 0.00 3.91
3209 4861 0.107654 ACTAACTCCTCAATGCCGCC 60.108 55.000 0.00 0.00 0.00 6.13
3215 4868 0.831307 GGCGGGACTAACTCCTCAAT 59.169 55.000 0.00 0.00 39.39 2.57
3279 4932 2.885861 CGGCTACGCTGGAAGACT 59.114 61.111 0.00 0.00 34.07 3.24
3316 4969 2.758089 CCAAGACGCTGATGCCTGC 61.758 63.158 0.00 0.00 35.36 4.85
3353 5018 1.224592 CTGGCTGGGCGGACTTTAT 59.775 57.895 0.00 0.00 0.00 1.40
3424 5089 3.527427 ATCCGCGCGAGATGACCA 61.527 61.111 34.63 4.42 0.00 4.02
3429 5094 4.957684 CCAGCATCCGCGCGAGAT 62.958 66.667 34.63 27.33 45.49 2.75
3508 5173 3.591254 AAAGGACCTCGTCGCCTGC 62.591 63.158 0.00 0.00 32.65 4.85
3516 5181 1.581447 GCCAAGCAAAAGGACCTCG 59.419 57.895 0.00 0.00 0.00 4.63
3519 5184 2.142357 GACGGCCAAGCAAAAGGACC 62.142 60.000 2.24 0.00 0.00 4.46
3550 5215 6.151817 AGTGATTTAGGATTTGCTTGTTCTCC 59.848 38.462 0.00 0.00 0.00 3.71
3595 5260 5.818678 ATTCCTACACTTGAACAGGTACA 57.181 39.130 0.00 0.00 0.00 2.90
3629 5294 5.767168 CCACTTTGCCCATTAATTTCCAAAA 59.233 36.000 0.00 0.00 0.00 2.44
3685 5350 2.788191 GATCCGCCCCGATGGATGAC 62.788 65.000 0.00 0.00 44.92 3.06
4238 5904 4.032445 CAGCAGCATTTATTGTTCACATGC 59.968 41.667 0.00 0.00 0.00 4.06
4280 5946 8.982685 CACTAGTACCAGCATAATTGATACAAG 58.017 37.037 0.00 0.00 0.00 3.16
4295 5991 4.023980 TCCAGGTTCATCACTAGTACCAG 58.976 47.826 13.09 5.99 0.00 4.00
4317 6013 8.468399 TCCTTTCACGGTAAAAATAAGTGTTTT 58.532 29.630 0.00 0.00 34.71 2.43
4367 6063 7.171337 ACAGTAATTTTTGGCATAAAACTGCAG 59.829 33.333 23.40 13.48 44.12 4.41
4496 6192 2.633967 CTCCCTATCTCTTCTGCATGCT 59.366 50.000 20.33 0.00 0.00 3.79
4585 6281 8.408601 GGCAGATATAACACAGATCAAAAACAT 58.591 33.333 0.00 0.00 0.00 2.71
4593 6289 6.934056 AGAGATGGCAGATATAACACAGATC 58.066 40.000 0.00 0.00 0.00 2.75
4668 6364 1.339438 GGCAGGCACAAGAGATTCAGA 60.339 52.381 0.00 0.00 0.00 3.27
4682 6378 2.997986 CAATGAAATTCACTTGGCAGGC 59.002 45.455 0.00 0.00 31.22 4.85
4719 6415 6.089551 CAGAGACGTCGAACAGTGATAATTTT 59.910 38.462 10.46 0.00 0.00 1.82
4724 6420 3.332034 TCAGAGACGTCGAACAGTGATA 58.668 45.455 10.46 0.00 0.00 2.15
4754 6450 3.322541 TGCACTAGTACACTGCAGGTTAA 59.677 43.478 19.93 0.00 36.00 2.01
4755 6451 2.894765 TGCACTAGTACACTGCAGGTTA 59.105 45.455 19.93 5.51 36.00 2.85
4778 6474 3.640029 TGGAACGGAGGGAGTATTATGAC 59.360 47.826 0.00 0.00 0.00 3.06
4910 7781 9.731819 TCTCGATGTATCTAATAGTGTCAAAAC 57.268 33.333 0.00 0.00 0.00 2.43
5055 8053 3.939740 AAGCTAAATCATGCTCCCTCA 57.060 42.857 0.00 0.00 38.75 3.86
5128 8126 6.864165 GCCTGTTACATATGCTACTTCTACTC 59.136 42.308 1.58 0.00 0.00 2.59
5201 8199 4.646492 GCATATCCATCCTCTTTGTGGTTT 59.354 41.667 0.00 0.00 34.61 3.27
5264 8262 7.789831 TCATCTAACTCCCTAATCCACTGTTAT 59.210 37.037 0.00 0.00 0.00 1.89
5365 8363 2.113774 CTGTGGCCTCCAACAGCA 59.886 61.111 3.32 0.00 34.18 4.41
5371 8369 0.846427 AATCCTTCCTGTGGCCTCCA 60.846 55.000 3.32 0.00 0.00 3.86
5517 8669 4.388577 AAAAGTCAAGCCCACCTAGAAT 57.611 40.909 0.00 0.00 0.00 2.40
5518 8670 3.876309 AAAAGTCAAGCCCACCTAGAA 57.124 42.857 0.00 0.00 0.00 2.10
5555 8707 5.738208 GCTTTGCAATGCATAAGGAATAGCT 60.738 40.000 27.13 0.00 38.76 3.32
5614 8833 7.944729 ACTAGCATGACCAGAATACAAATTT 57.055 32.000 0.00 0.00 0.00 1.82
5778 8997 2.415776 AGGCAATTTTGACGGCAATTG 58.584 42.857 3.50 8.95 42.41 2.32
5831 9050 7.973944 CCTTACAAAACAGAAAGTGTAGCTTTT 59.026 33.333 0.00 0.00 46.54 2.27
5837 9056 6.003859 TCCCCTTACAAAACAGAAAGTGTA 57.996 37.500 0.00 0.00 39.03 2.90
5842 9061 7.291566 TCAGTATTCCCCTTACAAAACAGAAA 58.708 34.615 0.00 0.00 0.00 2.52
5857 9076 6.737346 GCATCTACTCACTCTTCAGTATTCCC 60.737 46.154 0.00 0.00 0.00 3.97
5870 9089 2.447443 TCCGTTCTGCATCTACTCACT 58.553 47.619 0.00 0.00 0.00 3.41
5871 9090 2.941453 TCCGTTCTGCATCTACTCAC 57.059 50.000 0.00 0.00 0.00 3.51
5921 9140 5.622346 TTTGTGGGCCATTTCTTTTACTT 57.378 34.783 10.70 0.00 0.00 2.24
5973 9192 3.626930 AGTTCAGGTGGTTAAGCAACAA 58.373 40.909 23.68 8.30 36.29 2.83
5974 9193 3.290948 AGTTCAGGTGGTTAAGCAACA 57.709 42.857 23.68 1.94 36.29 3.33
5975 9194 3.004419 GGAAGTTCAGGTGGTTAAGCAAC 59.996 47.826 14.88 14.88 0.00 4.17
6023 9242 4.040461 TGTTGAAACCACTCCCAAAACAAA 59.960 37.500 0.00 0.00 0.00 2.83
6130 9349 0.749049 GCGTCCGAGTTATAAGGGGT 59.251 55.000 0.00 0.00 0.00 4.95
6175 9394 3.068873 CCGGACAAATGAGGGTTCAAAAA 59.931 43.478 0.00 0.00 36.78 1.94
6224 9443 4.579454 CCAATCATAGGCATTTGACTGG 57.421 45.455 4.98 4.98 33.46 4.00
6235 9454 0.322816 CCATCCCCGCCAATCATAGG 60.323 60.000 0.00 0.00 0.00 2.57
6236 9455 0.692476 TCCATCCCCGCCAATCATAG 59.308 55.000 0.00 0.00 0.00 2.23
6237 9456 0.692476 CTCCATCCCCGCCAATCATA 59.308 55.000 0.00 0.00 0.00 2.15
6238 9457 1.061905 TCTCCATCCCCGCCAATCAT 61.062 55.000 0.00 0.00 0.00 2.45
6239 9458 1.692395 TCTCCATCCCCGCCAATCA 60.692 57.895 0.00 0.00 0.00 2.57
6240 9459 1.072159 CTCTCCATCCCCGCCAATC 59.928 63.158 0.00 0.00 0.00 2.67
6241 9460 0.988145 TTCTCTCCATCCCCGCCAAT 60.988 55.000 0.00 0.00 0.00 3.16
6242 9461 1.204786 TTTCTCTCCATCCCCGCCAA 61.205 55.000 0.00 0.00 0.00 4.52
6243 9462 1.615124 TTTCTCTCCATCCCCGCCA 60.615 57.895 0.00 0.00 0.00 5.69
6244 9463 1.147153 CTTTCTCTCCATCCCCGCC 59.853 63.158 0.00 0.00 0.00 6.13
6245 9464 0.105778 CTCTTTCTCTCCATCCCCGC 59.894 60.000 0.00 0.00 0.00 6.13
6246 9465 1.686052 CTCTCTTTCTCTCCATCCCCG 59.314 57.143 0.00 0.00 0.00 5.73
6247 9466 3.039252 TCTCTCTTTCTCTCCATCCCC 57.961 52.381 0.00 0.00 0.00 4.81
6248 9467 4.285863 TCTTCTCTCTTTCTCTCCATCCC 58.714 47.826 0.00 0.00 0.00 3.85
6249 9468 5.930837 TTCTTCTCTCTTTCTCTCCATCC 57.069 43.478 0.00 0.00 0.00 3.51
6250 9469 7.111247 TCATTCTTCTCTCTTTCTCTCCATC 57.889 40.000 0.00 0.00 0.00 3.51
6251 9470 7.493499 TTCATTCTTCTCTCTTTCTCTCCAT 57.507 36.000 0.00 0.00 0.00 3.41
6252 9471 6.924913 TTCATTCTTCTCTCTTTCTCTCCA 57.075 37.500 0.00 0.00 0.00 3.86
6253 9472 9.883142 TTTATTCATTCTTCTCTCTTTCTCTCC 57.117 33.333 0.00 0.00 0.00 3.71
6272 9491 9.449719 GGACCACTTTATCTCTTTCTTTATTCA 57.550 33.333 0.00 0.00 0.00 2.57
6273 9492 8.604890 CGGACCACTTTATCTCTTTCTTTATTC 58.395 37.037 0.00 0.00 0.00 1.75
6274 9493 7.553044 CCGGACCACTTTATCTCTTTCTTTATT 59.447 37.037 0.00 0.00 0.00 1.40
6275 9494 7.048512 CCGGACCACTTTATCTCTTTCTTTAT 58.951 38.462 0.00 0.00 0.00 1.40
6276 9495 6.403878 CCGGACCACTTTATCTCTTTCTTTA 58.596 40.000 0.00 0.00 0.00 1.85
6277 9496 5.246307 CCGGACCACTTTATCTCTTTCTTT 58.754 41.667 0.00 0.00 0.00 2.52
6278 9497 4.323562 CCCGGACCACTTTATCTCTTTCTT 60.324 45.833 0.73 0.00 0.00 2.52
6279 9498 3.197983 CCCGGACCACTTTATCTCTTTCT 59.802 47.826 0.73 0.00 0.00 2.52
6280 9499 3.532542 CCCGGACCACTTTATCTCTTTC 58.467 50.000 0.73 0.00 0.00 2.62
6281 9500 2.238898 CCCCGGACCACTTTATCTCTTT 59.761 50.000 0.73 0.00 0.00 2.52
6282 9501 1.838077 CCCCGGACCACTTTATCTCTT 59.162 52.381 0.73 0.00 0.00 2.85
6283 9502 1.273666 ACCCCGGACCACTTTATCTCT 60.274 52.381 0.73 0.00 0.00 3.10
6284 9503 1.134491 CACCCCGGACCACTTTATCTC 60.134 57.143 0.73 0.00 0.00 2.75
6285 9504 0.909623 CACCCCGGACCACTTTATCT 59.090 55.000 0.73 0.00 0.00 1.98
6286 9505 0.107361 CCACCCCGGACCACTTTATC 60.107 60.000 0.73 0.00 36.56 1.75
6287 9506 0.548197 TCCACCCCGGACCACTTTAT 60.548 55.000 0.73 0.00 39.64 1.40
6288 9507 1.152074 TCCACCCCGGACCACTTTA 60.152 57.895 0.73 0.00 39.64 1.85
6289 9508 2.448931 TCCACCCCGGACCACTTT 60.449 61.111 0.73 0.00 39.64 2.66
6321 9540 0.099436 GACATGTTCTGGCAATCCGC 59.901 55.000 0.00 0.00 41.28 5.54
6322 9541 0.734889 GGACATGTTCTGGCAATCCG 59.265 55.000 0.00 0.00 32.82 4.18
6323 9542 1.747355 CTGGACATGTTCTGGCAATCC 59.253 52.381 5.55 0.00 32.82 3.01
6324 9543 2.421424 GTCTGGACATGTTCTGGCAATC 59.579 50.000 10.52 0.00 32.82 2.67
6325 9544 2.224843 TGTCTGGACATGTTCTGGCAAT 60.225 45.455 15.27 0.00 36.21 3.56
6326 9545 1.142667 TGTCTGGACATGTTCTGGCAA 59.857 47.619 15.27 0.47 36.21 4.52
6327 9546 0.764271 TGTCTGGACATGTTCTGGCA 59.236 50.000 13.81 13.81 36.21 4.92
6328 9547 1.160137 GTGTCTGGACATGTTCTGGC 58.840 55.000 8.60 8.60 43.97 4.85
6329 9548 1.611673 GGGTGTCTGGACATGTTCTGG 60.612 57.143 10.83 1.75 43.97 3.86
6330 9549 1.349026 AGGGTGTCTGGACATGTTCTG 59.651 52.381 5.55 5.08 43.97 3.02
6331 9550 1.625818 GAGGGTGTCTGGACATGTTCT 59.374 52.381 5.55 3.07 43.97 3.01
6332 9551 1.347707 TGAGGGTGTCTGGACATGTTC 59.652 52.381 0.00 0.00 43.97 3.18
6333 9552 1.434188 TGAGGGTGTCTGGACATGTT 58.566 50.000 0.00 0.00 43.97 2.71
6339 9696 3.242867 GGATGATATGAGGGTGTCTGGA 58.757 50.000 0.00 0.00 0.00 3.86
6342 9699 2.089982 TGGGGATGATATGAGGGTGTCT 60.090 50.000 0.00 0.00 0.00 3.41
6368 9725 1.219393 GGAGAGCCTCAAACTCCCG 59.781 63.158 0.00 0.00 42.84 5.14
6371 9728 2.810852 CAAACAGGAGAGCCTCAAACTC 59.189 50.000 0.00 0.00 44.80 3.01
6372 9729 2.487986 CCAAACAGGAGAGCCTCAAACT 60.488 50.000 0.00 0.00 44.80 2.66
6373 9730 1.882623 CCAAACAGGAGAGCCTCAAAC 59.117 52.381 0.00 0.00 44.80 2.93
6374 9731 1.774254 TCCAAACAGGAGAGCCTCAAA 59.226 47.619 0.00 0.00 44.80 2.69
6375 9732 1.434188 TCCAAACAGGAGAGCCTCAA 58.566 50.000 0.00 0.00 44.80 3.02
6376 9733 3.164024 TCCAAACAGGAGAGCCTCA 57.836 52.632 0.00 0.00 44.80 3.86
6415 9840 1.774217 ACCCCTCAAACTGCCCTCA 60.774 57.895 0.00 0.00 0.00 3.86
6416 9841 1.002011 GACCCCTCAAACTGCCCTC 60.002 63.158 0.00 0.00 0.00 4.30
6417 9842 1.774217 TGACCCCTCAAACTGCCCT 60.774 57.895 0.00 0.00 0.00 5.19
6418 9843 1.303643 CTGACCCCTCAAACTGCCC 60.304 63.158 0.00 0.00 0.00 5.36
6419 9844 1.303643 CCTGACCCCTCAAACTGCC 60.304 63.158 0.00 0.00 0.00 4.85
6420 9845 0.178990 AACCTGACCCCTCAAACTGC 60.179 55.000 0.00 0.00 0.00 4.40
6421 9846 1.133792 ACAACCTGACCCCTCAAACTG 60.134 52.381 0.00 0.00 0.00 3.16
6422 9847 1.222567 ACAACCTGACCCCTCAAACT 58.777 50.000 0.00 0.00 0.00 2.66
6423 9848 2.370849 TCTACAACCTGACCCCTCAAAC 59.629 50.000 0.00 0.00 0.00 2.93
6424 9849 2.696775 TCTACAACCTGACCCCTCAAA 58.303 47.619 0.00 0.00 0.00 2.69
6425 9850 2.409064 TCTACAACCTGACCCCTCAA 57.591 50.000 0.00 0.00 0.00 3.02
6426 9851 2.187958 CATCTACAACCTGACCCCTCA 58.812 52.381 0.00 0.00 0.00 3.86
6427 9852 1.134371 GCATCTACAACCTGACCCCTC 60.134 57.143 0.00 0.00 0.00 4.30
6428 9853 0.912486 GCATCTACAACCTGACCCCT 59.088 55.000 0.00 0.00 0.00 4.79
6429 9854 0.912486 AGCATCTACAACCTGACCCC 59.088 55.000 0.00 0.00 0.00 4.95
6430 9855 1.134371 GGAGCATCTACAACCTGACCC 60.134 57.143 0.00 0.00 33.73 4.46
6431 9856 1.555075 TGGAGCATCTACAACCTGACC 59.445 52.381 0.00 0.00 33.73 4.02
6432 9857 3.265791 CTTGGAGCATCTACAACCTGAC 58.734 50.000 0.00 0.00 30.35 3.51
6433 9858 2.906389 ACTTGGAGCATCTACAACCTGA 59.094 45.455 0.00 0.00 30.35 3.86
6434 9859 3.005554 CACTTGGAGCATCTACAACCTG 58.994 50.000 0.00 0.00 30.35 4.00
6435 9860 2.026822 CCACTTGGAGCATCTACAACCT 60.027 50.000 0.00 0.00 37.39 3.50
6436 9861 2.027192 TCCACTTGGAGCATCTACAACC 60.027 50.000 0.00 0.00 39.78 3.77
6437 9862 3.003480 GTCCACTTGGAGCATCTACAAC 58.997 50.000 0.00 0.00 46.49 3.32
6438 9863 2.637382 TGTCCACTTGGAGCATCTACAA 59.363 45.455 0.00 0.00 46.49 2.41
6439 9864 2.256306 TGTCCACTTGGAGCATCTACA 58.744 47.619 0.00 0.00 46.49 2.74
6440 9865 3.334583 TTGTCCACTTGGAGCATCTAC 57.665 47.619 0.00 0.00 46.49 2.59
6441 9866 3.582647 TCTTTGTCCACTTGGAGCATCTA 59.417 43.478 0.00 0.00 46.49 1.98
6442 9867 2.373169 TCTTTGTCCACTTGGAGCATCT 59.627 45.455 0.00 0.00 46.49 2.90
6443 9868 2.746362 CTCTTTGTCCACTTGGAGCATC 59.254 50.000 0.00 0.00 46.49 3.91
6444 9869 2.373169 TCTCTTTGTCCACTTGGAGCAT 59.627 45.455 0.00 0.00 46.49 3.79
6445 9870 1.768275 TCTCTTTGTCCACTTGGAGCA 59.232 47.619 0.00 0.00 46.49 4.26
6446 9871 2.550830 TCTCTTTGTCCACTTGGAGC 57.449 50.000 0.00 0.00 46.49 4.70
6447 9872 4.078639 ACTTCTCTTTGTCCACTTGGAG 57.921 45.455 0.00 0.00 46.49 3.86
6448 9873 4.503714 AACTTCTCTTTGTCCACTTGGA 57.496 40.909 0.00 0.00 43.08 3.53
6449 9874 4.757149 CCTAACTTCTCTTTGTCCACTTGG 59.243 45.833 0.00 0.00 0.00 3.61
6450 9875 4.757149 CCCTAACTTCTCTTTGTCCACTTG 59.243 45.833 0.00 0.00 0.00 3.16
6451 9876 4.202472 CCCCTAACTTCTCTTTGTCCACTT 60.202 45.833 0.00 0.00 0.00 3.16
6512 9937 7.618137 ACTATCACCAATAGTTTTAAGTCCGT 58.382 34.615 0.00 0.00 46.93 4.69
6721 10146 9.264719 CAAAATTTCAAAGGGGATAGATTATGC 57.735 33.333 0.00 0.00 0.00 3.14
6757 10182 2.777832 AAGAGATGGTCAGCACCTTC 57.222 50.000 1.89 1.89 44.17 3.46
6776 10201 4.080863 GGCATTCCAGAGGAGAGTAGAAAA 60.081 45.833 0.00 0.00 31.21 2.29
6821 10247 3.076621 TGTCCAGCTTTGCTTAGTCATG 58.923 45.455 0.00 0.00 36.40 3.07
6833 10259 2.304180 AGCAAGTCACTATGTCCAGCTT 59.696 45.455 0.00 0.00 0.00 3.74
6839 10265 3.334583 TTCCCAGCAAGTCACTATGTC 57.665 47.619 0.00 0.00 0.00 3.06
6950 10376 5.695851 ACAGTGGAAAGAATCATGTCAAC 57.304 39.130 0.00 0.00 0.00 3.18
7091 10517 2.420022 GCTCACCATTAGTCGTGCATTT 59.580 45.455 0.00 0.00 0.00 2.32
7099 10525 1.672881 GCCATGTGCTCACCATTAGTC 59.327 52.381 0.00 0.00 36.87 2.59
7124 10550 6.133253 TGTATATATGGCAAAGTATGGGCA 57.867 37.500 0.00 0.00 44.07 5.36
7143 10569 8.660295 ATGAAATTGGCATTCCTCATATGTAT 57.340 30.769 1.90 0.00 0.00 2.29
7190 10616 5.902681 TCACCATTCAGAGTTAGAATACCG 58.097 41.667 0.00 0.00 34.14 4.02
7360 10786 0.038310 AGGGTTAGCCTCCAGTTTGC 59.962 55.000 0.00 0.00 34.45 3.68
7440 10866 4.081142 ACACTGAATCGATGATGGGTGTTA 60.081 41.667 0.00 0.00 31.43 2.41
7470 10896 7.168219 AGTGGACTAAAACATCATCTTTGCTA 58.832 34.615 0.00 0.00 0.00 3.49
7471 10897 6.006449 AGTGGACTAAAACATCATCTTTGCT 58.994 36.000 0.00 0.00 0.00 3.91
7472 10898 6.259550 AGTGGACTAAAACATCATCTTTGC 57.740 37.500 0.00 0.00 0.00 3.68
7473 10899 8.103948 AGAAGTGGACTAAAACATCATCTTTG 57.896 34.615 0.00 0.00 0.00 2.77
7474 10900 7.939039 TGAGAAGTGGACTAAAACATCATCTTT 59.061 33.333 0.00 0.00 0.00 2.52
7475 10901 7.389053 GTGAGAAGTGGACTAAAACATCATCTT 59.611 37.037 0.00 0.00 0.00 2.40
7550 10989 2.993899 AGTTTACACATTCTTCTCGGCG 59.006 45.455 0.00 0.00 0.00 6.46
7659 11098 8.087982 AGGTTATTTGTTACGCATATGATCAG 57.912 34.615 6.97 0.00 0.00 2.90
7690 11129 1.531423 AGAGGAAGTGCGAGACGTAA 58.469 50.000 0.00 0.00 0.00 3.18
7699 11138 6.378710 AAAAGAACTTGTTAGAGGAAGTGC 57.621 37.500 0.00 0.00 32.66 4.40
7773 11212 7.757941 TTCCACACATCATCTTCAATGTAAA 57.242 32.000 0.00 0.00 34.42 2.01
7780 11219 7.814107 GCTTTATTTTTCCACACATCATCTTCA 59.186 33.333 0.00 0.00 0.00 3.02
7798 11237 4.369182 CGGTGATCGTCCTAGCTTTATTT 58.631 43.478 0.00 0.00 0.00 1.40
7812 11251 2.413837 AGTTTTTGAGGACGGTGATCG 58.586 47.619 0.00 0.00 45.88 3.69
7836 11275 9.567776 TTGATACACTTATTTTGAAACAGAGGA 57.432 29.630 0.00 0.00 0.00 3.71
7911 11350 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
7912 11351 0.901580 GTTGTACTCCCTCCGTCCCA 60.902 60.000 0.00 0.00 0.00 4.37
7913 11352 0.614134 AGTTGTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
7915 11354 3.760684 TCTAAAGTTGTACTCCCTCCGTC 59.239 47.826 0.00 0.00 0.00 4.79
7916 11355 3.771216 TCTAAAGTTGTACTCCCTCCGT 58.229 45.455 0.00 0.00 0.00 4.69
7917 11356 4.796038 TTCTAAAGTTGTACTCCCTCCG 57.204 45.455 0.00 0.00 0.00 4.63
7919 11358 9.315525 GTTATGATTCTAAAGTTGTACTCCCTC 57.684 37.037 0.00 0.00 0.00 4.30
7945 11452 4.520111 TGCACATAATTTAGCTAGGCATGG 59.480 41.667 0.00 0.00 0.00 3.66
7979 11486 1.816835 TCCAGCACTGTCCTAGTAACG 59.183 52.381 0.00 0.00 37.60 3.18
7991 11498 1.067071 GTACGGTTAGCTTCCAGCACT 60.067 52.381 0.00 0.00 45.56 4.40
7998 11505 5.658468 ACAAGATTAGGTACGGTTAGCTTC 58.342 41.667 0.00 0.00 37.27 3.86
8007 12538 3.684788 AGCAAGCAACAAGATTAGGTACG 59.315 43.478 0.00 0.00 0.00 3.67
8015 12546 2.694628 TGTTTCCAGCAAGCAACAAGAT 59.305 40.909 0.00 0.00 0.00 2.40
8042 12573 2.104792 AGTTAGCTTTCAGCACTGTCCA 59.895 45.455 0.00 0.00 45.56 4.02
8076 12660 3.375782 AGATTGTTTCCAGCAAGCAAC 57.624 42.857 0.00 0.00 35.01 4.17
8077 12661 3.384146 TGAAGATTGTTTCCAGCAAGCAA 59.616 39.130 0.00 0.00 35.01 3.91
8078 12662 2.957680 TGAAGATTGTTTCCAGCAAGCA 59.042 40.909 0.00 0.00 35.01 3.91
8079 12663 3.648339 TGAAGATTGTTTCCAGCAAGC 57.352 42.857 0.00 0.00 33.00 4.01
8081 12665 6.899393 ATACTTGAAGATTGTTTCCAGCAA 57.101 33.333 0.00 0.00 0.00 3.91
8082 12666 6.680810 CAATACTTGAAGATTGTTTCCAGCA 58.319 36.000 0.00 0.00 0.00 4.41
8097 12681 2.738643 GCTCGGCTACAGCAATACTTGA 60.739 50.000 3.24 0.00 44.36 3.02
8108 12692 2.224185 TGAAGTTTTGAGCTCGGCTACA 60.224 45.455 9.64 0.77 39.88 2.74
8111 12695 1.876156 CTTGAAGTTTTGAGCTCGGCT 59.124 47.619 9.64 1.30 43.88 5.52
8123 12707 6.753744 GTGAATGAAGTTTTGAGCTTGAAGTT 59.246 34.615 0.00 0.00 0.00 2.66
8124 12708 6.268566 GTGAATGAAGTTTTGAGCTTGAAGT 58.731 36.000 0.00 0.00 0.00 3.01
8125 12709 5.397534 CGTGAATGAAGTTTTGAGCTTGAAG 59.602 40.000 0.00 0.00 0.00 3.02
8126 12710 5.273170 CGTGAATGAAGTTTTGAGCTTGAA 58.727 37.500 0.00 0.00 0.00 2.69
8127 12711 4.789481 GCGTGAATGAAGTTTTGAGCTTGA 60.789 41.667 0.00 0.00 0.00 3.02
8128 12712 3.423206 GCGTGAATGAAGTTTTGAGCTTG 59.577 43.478 0.00 0.00 0.00 4.01
8129 12713 3.550842 GGCGTGAATGAAGTTTTGAGCTT 60.551 43.478 0.00 0.00 0.00 3.74
8130 12714 2.030805 GGCGTGAATGAAGTTTTGAGCT 60.031 45.455 0.00 0.00 0.00 4.09
8131 12715 2.287547 TGGCGTGAATGAAGTTTTGAGC 60.288 45.455 0.00 0.00 0.00 4.26
8132 12716 3.003689 ACTGGCGTGAATGAAGTTTTGAG 59.996 43.478 0.00 0.00 0.00 3.02
8133 12717 2.948979 ACTGGCGTGAATGAAGTTTTGA 59.051 40.909 0.00 0.00 0.00 2.69
8134 12718 3.044986 CACTGGCGTGAATGAAGTTTTG 58.955 45.455 3.87 0.00 43.97 2.44
8135 12719 2.543653 GCACTGGCGTGAATGAAGTTTT 60.544 45.455 12.46 0.00 43.97 2.43
8136 12720 1.001378 GCACTGGCGTGAATGAAGTTT 60.001 47.619 12.46 0.00 43.97 2.66
8149 12733 3.302365 TTAATTCAAGCTTGCACTGGC 57.698 42.857 21.99 0.00 41.68 4.85
8151 12735 5.472148 TGGAATTAATTCAAGCTTGCACTG 58.528 37.500 25.55 0.00 38.53 3.66
8181 12765 5.739070 GCAACGATGTTATCATGGGAGTCTA 60.739 44.000 0.00 0.00 34.77 2.59
8187 12771 3.058016 GGATGCAACGATGTTATCATGGG 60.058 47.826 11.81 0.00 34.77 4.00
8199 12783 5.588246 TGCTTGAAAATATAGGATGCAACGA 59.412 36.000 0.00 0.00 0.00 3.85
8200 12784 5.820131 TGCTTGAAAATATAGGATGCAACG 58.180 37.500 0.00 0.00 0.00 4.10
8201 12785 9.918630 ATAATGCTTGAAAATATAGGATGCAAC 57.081 29.630 0.00 0.00 0.00 4.17
8234 12818 5.331902 GCTGAAATAATAGCTGTGCGAAAA 58.668 37.500 0.00 0.00 36.99 2.29
8284 12868 2.707849 GCAGGTGGCTCATGGCTTG 61.708 63.158 3.28 0.00 41.46 4.01
8312 12896 3.254166 AGCAGTGATTCGAAATTGCAAGT 59.746 39.130 16.57 0.00 34.17 3.16
8363 12947 2.034053 ACAAAATGAACGTGGACGCATT 59.966 40.909 0.00 0.00 44.43 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.