Multiple sequence alignment - TraesCS2B01G269200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G269200 chr2B 100.000 6324 0 0 1 6324 364735213 364728890 0.000000e+00 11679.0
1 TraesCS2B01G269200 chr2B 86.170 188 26 0 2392 2579 502766357 502766170 2.990000e-48 204.0
2 TraesCS2B01G269200 chr2B 96.694 121 4 0 1965 2085 17575755 17575875 1.080000e-47 202.0
3 TraesCS2B01G269200 chr2B 85.204 196 29 0 2386 2581 435809831 435810026 1.080000e-47 202.0
4 TraesCS2B01G269200 chr2B 92.727 55 2 2 6264 6316 363775854 363775800 1.890000e-10 78.7
5 TraesCS2B01G269200 chr2B 97.059 34 0 1 6129 6161 235070444 235070411 8.860000e-04 56.5
6 TraesCS2B01G269200 chr2D 98.588 2549 29 5 2077 4620 296849721 296852267 0.000000e+00 4501.0
7 TraesCS2B01G269200 chr2D 98.214 1400 21 3 4840 6237 296852282 296853679 0.000000e+00 2444.0
8 TraesCS2B01G269200 chr2D 97.806 1322 16 2 648 1968 296848418 296849727 0.000000e+00 2268.0
9 TraesCS2B01G269200 chr2D 89.255 577 39 18 1 556 296847374 296847948 0.000000e+00 701.0
10 TraesCS2B01G269200 chr2D 87.582 153 10 5 6175 6324 296853679 296853825 1.090000e-37 169.0
11 TraesCS2B01G269200 chr2D 92.473 93 5 1 4404 4494 128890638 128890730 1.430000e-26 132.0
12 TraesCS2B01G269200 chr2D 93.333 90 4 1 4402 4489 382456027 382455938 1.430000e-26 132.0
13 TraesCS2B01G269200 chr2D 94.030 67 3 1 5840 5906 204142398 204142333 4.030000e-17 100.0
14 TraesCS2B01G269200 chr2A 97.570 2551 44 7 2077 4620 369499143 369501682 0.000000e+00 4351.0
15 TraesCS2B01G269200 chr2A 96.707 1336 22 3 634 1966 369497831 369499147 0.000000e+00 2204.0
16 TraesCS2B01G269200 chr2A 97.800 818 13 2 4840 5653 369501697 369502513 0.000000e+00 1406.0
17 TraesCS2B01G269200 chr2A 90.719 431 22 9 5896 6317 369503030 369503451 5.540000e-155 558.0
18 TraesCS2B01G269200 chr2A 91.083 314 26 2 1 313 369497010 369497322 2.110000e-114 424.0
19 TraesCS2B01G269200 chr2A 94.615 260 8 3 5651 5906 369502674 369502931 1.280000e-106 398.0
20 TraesCS2B01G269200 chr2A 87.059 255 27 2 308 556 369497369 369497623 3.730000e-72 283.0
21 TraesCS2B01G269200 chr2A 94.697 132 6 1 1953 2084 469799722 469799592 2.990000e-48 204.0
22 TraesCS2B01G269200 chr2A 86.667 60 4 3 6260 6317 118678127 118678184 5.290000e-06 63.9
23 TraesCS2B01G269200 chr7D 99.052 211 2 0 4629 4839 267596333 267596123 4.630000e-101 379.0
24 TraesCS2B01G269200 chr7D 93.939 66 3 1 5841 5906 525768129 525768065 1.450000e-16 99.0
25 TraesCS2B01G269200 chr7D 92.424 66 4 1 5841 5906 246022900 246022836 6.750000e-15 93.5
26 TraesCS2B01G269200 chr6B 99.052 211 2 0 4629 4839 509323923 509323713 4.630000e-101 379.0
27 TraesCS2B01G269200 chr6B 77.727 440 86 6 1325 1758 519720446 519720879 6.290000e-65 259.0
28 TraesCS2B01G269200 chr6B 95.763 118 5 0 1965 2082 92916339 92916456 2.330000e-44 191.0
29 TraesCS2B01G269200 chr6B 93.182 88 4 1 4404 4489 13827525 13827612 1.850000e-25 128.0
30 TraesCS2B01G269200 chr5D 99.057 212 1 1 4629 4839 551353111 551353322 4.630000e-101 379.0
31 TraesCS2B01G269200 chr5D 78.607 402 64 14 3849 4248 490033358 490032977 4.900000e-61 246.0
32 TraesCS2B01G269200 chr5D 86.441 59 5 3 6264 6319 557453860 557453918 1.900000e-05 62.1
33 TraesCS2B01G269200 chr7B 99.052 211 1 1 4629 4839 457410828 457411037 1.660000e-100 377.0
34 TraesCS2B01G269200 chr7B 98.592 213 1 2 4629 4839 16919202 16919414 5.990000e-100 375.0
35 TraesCS2B01G269200 chr7B 98.578 211 2 1 4633 4842 323203321 323203111 7.740000e-99 372.0
36 TraesCS2B01G269200 chr7B 98.578 211 2 1 4629 4839 524618010 524618219 7.740000e-99 372.0
37 TraesCS2B01G269200 chr7B 96.847 222 6 1 4629 4849 457412417 457412638 2.780000e-98 370.0
38 TraesCS2B01G269200 chr7B 98.333 120 2 0 1963 2082 606363840 606363721 1.790000e-50 211.0
39 TraesCS2B01G269200 chr7B 85.714 196 28 0 2386 2581 292454582 292454777 2.310000e-49 207.0
40 TraesCS2B01G269200 chr7B 92.105 38 2 1 6123 6159 270711447 270711484 1.100000e-02 52.8
41 TraesCS2B01G269200 chr1B 98.578 211 3 0 4629 4839 74239941 74239731 2.150000e-99 374.0
42 TraesCS2B01G269200 chr6D 77.342 459 92 6 1325 1777 344207918 344208370 1.750000e-65 261.0
43 TraesCS2B01G269200 chr6D 92.958 71 4 1 5836 5906 29839563 29839632 1.120000e-17 102.0
44 TraesCS2B01G269200 chr6A 77.342 459 92 6 1325 1777 484608490 484608942 1.750000e-65 261.0
45 TraesCS2B01G269200 chr6A 88.571 105 6 4 4388 4488 55552652 55552550 8.610000e-24 122.0
46 TraesCS2B01G269200 chr6A 89.286 56 4 2 6263 6316 581031328 581031273 1.140000e-07 69.4
47 TraesCS2B01G269200 chr6A 97.436 39 0 1 6128 6165 122654557 122654519 1.470000e-06 65.8
48 TraesCS2B01G269200 chr6A 97.436 39 0 1 6129 6166 455988886 455988924 1.470000e-06 65.8
49 TraesCS2B01G269200 chr5A 78.607 402 64 15 3849 4248 611650972 611650591 4.900000e-61 246.0
50 TraesCS2B01G269200 chr5A 86.387 191 24 2 2390 2579 502803490 502803679 2.310000e-49 207.0
51 TraesCS2B01G269200 chr4D 85.714 245 18 8 2390 2632 258907636 258907407 6.330000e-60 243.0
52 TraesCS2B01G269200 chr4D 94.318 88 4 1 4400 4487 340298659 340298573 3.980000e-27 134.0
53 TraesCS2B01G269200 chr4D 97.436 39 0 1 6128 6165 265367229 265367267 1.470000e-06 65.8
54 TraesCS2B01G269200 chr4A 85.714 245 18 8 2390 2632 242899615 242899386 6.330000e-60 243.0
55 TraesCS2B01G269200 chr5B 77.612 402 68 16 3849 4248 604162215 604161834 2.290000e-54 224.0
56 TraesCS2B01G269200 chr5B 85.567 194 28 0 2386 2579 645807380 645807573 2.990000e-48 204.0
57 TraesCS2B01G269200 chr5B 95.798 119 5 0 1964 2082 525451601 525451719 6.470000e-45 193.0
58 TraesCS2B01G269200 chr5B 93.600 125 7 1 1964 2088 655145208 655145331 1.080000e-42 185.0
59 TraesCS2B01G269200 chr5B 96.875 32 0 1 6129 6159 623930347 623930316 1.100000e-02 52.8
60 TraesCS2B01G269200 chr3D 95.902 122 4 1 1964 2085 95239648 95239768 5.000000e-46 196.0
61 TraesCS2B01G269200 chr3D 94.030 67 3 1 5840 5906 567266222 567266287 4.030000e-17 100.0
62 TraesCS2B01G269200 chr3D 90.741 54 2 3 6265 6316 401169675 401169727 1.140000e-07 69.4
63 TraesCS2B01G269200 chr3B 94.444 126 7 0 1957 2082 284489696 284489821 1.800000e-45 195.0
64 TraesCS2B01G269200 chr3B 96.522 115 4 0 1964 2078 727742930 727743044 2.330000e-44 191.0
65 TraesCS2B01G269200 chr3B 89.091 55 4 2 6264 6316 52859118 52859064 4.090000e-07 67.6
66 TraesCS2B01G269200 chr3B 94.872 39 1 1 6128 6165 751818647 751818685 6.850000e-05 60.2
67 TraesCS2B01G269200 chr4B 95.455 88 3 1 4400 4487 421738582 421738496 8.550000e-29 139.0
68 TraesCS2B01G269200 chr4B 95.455 66 2 1 5841 5906 446519321 446519385 3.120000e-18 104.0
69 TraesCS2B01G269200 chr4B 90.566 53 2 3 6266 6316 49767706 49767655 4.090000e-07 67.6
70 TraesCS2B01G269200 chr1A 88.991 109 6 5 4386 4491 513731247 513731352 5.150000e-26 130.0
71 TraesCS2B01G269200 chr3A 91.781 73 4 2 5841 5912 238686371 238686300 4.030000e-17 100.0
72 TraesCS2B01G269200 chr7A 91.837 49 2 1 6270 6316 622950253 622950205 4.090000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G269200 chr2B 364728890 364735213 6323 True 11679.000000 11679 100.000000 1 6324 1 chr2B.!!$R3 6323
1 TraesCS2B01G269200 chr2D 296847374 296853825 6451 False 2016.600000 4501 94.289000 1 6324 5 chr2D.!!$F2 6323
2 TraesCS2B01G269200 chr2A 369497010 369503451 6441 False 1374.857143 4351 93.650429 1 6317 7 chr2A.!!$F2 6316
3 TraesCS2B01G269200 chr7B 457410828 457412638 1810 False 373.500000 377 97.949500 4629 4849 2 chr7B.!!$F5 220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.970937 CCTCTCCGCTGTGGGTTCTA 60.971 60.000 7.51 0.00 38.76 2.10 F
1974 2478 0.030908 GCTGTCGAATACTCCCTCCG 59.969 60.000 0.00 0.00 0.00 4.63 F
1977 2481 0.667453 GTCGAATACTCCCTCCGTCC 59.333 60.000 0.00 0.00 0.00 4.79 F
1978 2482 0.816825 TCGAATACTCCCTCCGTCCG 60.817 60.000 0.00 0.00 0.00 4.79 F
2073 2577 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69 F
2075 2579 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30 F
2843 3350 2.094906 CACAAAGGGTCATCAGTGCATG 60.095 50.000 0.00 0.00 0.00 4.06 F
4598 5110 3.819368 TCATGTTCTGGCAAAAGACTGA 58.181 40.909 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 2562 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
3118 3626 1.681264 CAAAAGCCGGAACAGAAAGGT 59.319 47.619 5.05 0.0 0.00 3.50 R
3751 4261 2.225491 GCGAAGTGGTGTTTATGCTTCA 59.775 45.455 0.00 0.0 36.34 3.02 R
4105 4615 5.240891 TCGAGCATTTTGAACATCTCTCTT 58.759 37.500 0.00 0.0 0.00 2.85 R
4255 4765 3.573538 TGAAAATACAAGTGCCATGCTGT 59.426 39.130 0.00 0.0 0.00 4.40 R
4306 4816 4.662278 AGCTTGTAGGGCTTGATAACAAA 58.338 39.130 0.00 0.0 36.56 2.83 R
4890 6991 3.996150 ATATCCGCCTGAAAATTGCAG 57.004 42.857 0.00 0.0 0.00 4.41 R
5638 7743 1.734465 GCACTCTACAAGCATGGTGAC 59.266 52.381 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 2.040278 CTGGGCCCTCCTGACTCT 59.960 66.667 25.70 0.00 36.68 3.24
187 188 0.970937 CCTCTCCGCTGTGGGTTCTA 60.971 60.000 7.51 0.00 38.76 2.10
223 224 3.712907 GTTAGGAGCCCGCCCACA 61.713 66.667 0.00 0.00 0.00 4.17
239 240 3.561213 CATGCTCGTCCTGCAGCG 61.561 66.667 8.66 7.89 44.04 5.18
240 241 4.827087 ATGCTCGTCCTGCAGCGG 62.827 66.667 8.66 0.00 44.04 5.52
260 261 4.760047 CCGGCGGGGTCAACAGAG 62.760 72.222 20.56 0.00 0.00 3.35
262 263 4.329545 GGCGGGGTCAACAGAGCA 62.330 66.667 0.00 0.00 0.00 4.26
263 264 2.281484 GCGGGGTCAACAGAGCAA 60.281 61.111 0.00 0.00 0.00 3.91
264 265 2.617274 GCGGGGTCAACAGAGCAAC 61.617 63.158 0.00 0.00 0.00 4.17
265 266 1.227823 CGGGGTCAACAGAGCAACA 60.228 57.895 0.00 0.00 0.00 3.33
266 267 1.507141 CGGGGTCAACAGAGCAACAC 61.507 60.000 0.00 0.00 0.00 3.32
267 268 1.507141 GGGGTCAACAGAGCAACACG 61.507 60.000 0.00 0.00 0.00 4.49
268 269 1.279840 GGTCAACAGAGCAACACGC 59.720 57.895 0.00 0.00 42.91 5.34
325 413 2.594592 GGCTGCCTCCAAACGTGT 60.595 61.111 12.43 0.00 0.00 4.49
373 461 2.632377 GCCCATCGAATTTGAGACTCA 58.368 47.619 0.00 0.00 0.00 3.41
375 463 3.249559 GCCCATCGAATTTGAGACTCATC 59.750 47.826 5.87 0.04 0.00 2.92
404 492 2.337532 CTCGAACGTTCCGTGGGT 59.662 61.111 22.07 0.00 39.99 4.51
409 497 2.091102 GAACGTTCCGTGGGTCCTGA 62.091 60.000 17.68 0.00 39.99 3.86
421 509 1.134670 GGGTCCTGATGCAGTAGTCAC 60.135 57.143 0.00 0.00 0.00 3.67
534 628 1.447838 GACGCCATTCCGAAGCAGA 60.448 57.895 0.00 0.00 0.00 4.26
592 799 3.984193 GATGCCACTCTGCCCGCTT 62.984 63.158 0.00 0.00 0.00 4.68
593 800 3.984193 ATGCCACTCTGCCCGCTTC 62.984 63.158 0.00 0.00 0.00 3.86
595 802 3.710722 CCACTCTGCCCGCTTCCT 61.711 66.667 0.00 0.00 0.00 3.36
597 804 4.400961 ACTCTGCCCGCTTCCTGC 62.401 66.667 0.00 0.00 38.57 4.85
608 815 2.048222 TTCCTGCGTCGCTTCCTG 60.048 61.111 19.50 2.45 0.00 3.86
609 816 4.742201 TCCTGCGTCGCTTCCTGC 62.742 66.667 19.50 0.00 38.57 4.85
618 825 2.572284 GCTTCCTGCGTCCTACGT 59.428 61.111 0.00 0.00 44.73 3.57
626 833 3.185155 CGTCCTACGTCGCTTCCT 58.815 61.111 0.00 0.00 36.74 3.36
627 834 1.226323 CGTCCTACGTCGCTTCCTG 60.226 63.158 0.00 0.00 36.74 3.86
628 835 1.516603 GTCCTACGTCGCTTCCTGC 60.517 63.158 0.00 0.00 38.57 4.85
710 1211 4.435436 TCCTACGTGGCAGCAGCG 62.435 66.667 0.00 6.33 43.41 5.18
713 1214 2.432456 TACGTGGCAGCAGCGAAG 60.432 61.111 13.69 0.00 43.41 3.79
787 1290 3.764466 CAGCCCTCGCTTCCTCGT 61.764 66.667 0.00 0.00 45.55 4.18
1204 1707 2.045143 ACGACTCCGACCTCTCCC 60.045 66.667 0.00 0.00 39.50 4.30
1221 1724 4.075793 CCTCCCTCCTCCGACCCA 62.076 72.222 0.00 0.00 0.00 4.51
1290 1793 2.258591 GTCCTCAAGCGCGACTCA 59.741 61.111 12.10 0.00 0.00 3.41
1833 2336 1.073177 GTGCATGACATTTTGCTGGC 58.927 50.000 0.00 0.00 39.60 4.85
1898 2402 7.190335 TGCTATTTTCTAACTTAGCCAGGTA 57.810 36.000 0.00 0.00 36.97 3.08
1972 2476 2.785713 GAGCTGTCGAATACTCCCTC 57.214 55.000 0.00 0.00 0.00 4.30
1973 2477 1.338655 GAGCTGTCGAATACTCCCTCC 59.661 57.143 0.00 0.00 0.00 4.30
1974 2478 0.030908 GCTGTCGAATACTCCCTCCG 59.969 60.000 0.00 0.00 0.00 4.63
1975 2479 1.390565 CTGTCGAATACTCCCTCCGT 58.609 55.000 0.00 0.00 0.00 4.69
1976 2480 1.334243 CTGTCGAATACTCCCTCCGTC 59.666 57.143 0.00 0.00 0.00 4.79
1977 2481 0.667453 GTCGAATACTCCCTCCGTCC 59.333 60.000 0.00 0.00 0.00 4.79
1978 2482 0.816825 TCGAATACTCCCTCCGTCCG 60.817 60.000 0.00 0.00 0.00 4.79
1979 2483 0.816825 CGAATACTCCCTCCGTCCGA 60.817 60.000 0.00 0.00 0.00 4.55
1980 2484 1.396653 GAATACTCCCTCCGTCCGAA 58.603 55.000 0.00 0.00 0.00 4.30
1981 2485 1.753073 GAATACTCCCTCCGTCCGAAA 59.247 52.381 0.00 0.00 0.00 3.46
1982 2486 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
1983 2487 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
1984 2488 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1985 2489 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1986 2490 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1987 2491 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1988 2492 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1989 2493 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1990 2494 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1991 2495 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
1999 2503 5.143916 CGAAAATACTTGTCGGAGGAATG 57.856 43.478 0.00 0.00 0.00 2.67
2000 2504 4.034048 CGAAAATACTTGTCGGAGGAATGG 59.966 45.833 0.00 0.00 0.00 3.16
2001 2505 4.837093 AAATACTTGTCGGAGGAATGGA 57.163 40.909 0.00 0.00 0.00 3.41
2002 2506 5.373812 AAATACTTGTCGGAGGAATGGAT 57.626 39.130 0.00 0.00 0.00 3.41
2003 2507 2.698855 ACTTGTCGGAGGAATGGATG 57.301 50.000 0.00 0.00 0.00 3.51
2004 2508 1.909302 ACTTGTCGGAGGAATGGATGT 59.091 47.619 0.00 0.00 0.00 3.06
2005 2509 3.104512 ACTTGTCGGAGGAATGGATGTA 58.895 45.455 0.00 0.00 0.00 2.29
2006 2510 3.711704 ACTTGTCGGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 0.00 2.29
2007 2511 4.202264 ACTTGTCGGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 0.00 2.24
2008 2512 3.576861 TGTCGGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 0.00 1.98
2009 2513 4.736473 TGTCGGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 0.00 1.98
2010 2514 4.767409 TGTCGGAGGAATGGATGTATCTAG 59.233 45.833 0.00 0.00 0.00 2.43
2011 2515 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
2012 2516 5.654650 GTCGGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 0.00 1.98
2013 2517 5.654209 TCGGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
2014 2518 5.669477 GGAGGAATGGATGTATCTAGATGC 58.331 45.833 15.79 14.54 0.00 3.91
2015 2519 5.188555 GGAGGAATGGATGTATCTAGATGCA 59.811 44.000 23.38 23.38 37.79 3.96
2016 2520 6.296087 GGAGGAATGGATGTATCTAGATGCAA 60.296 42.308 24.65 11.20 37.00 4.08
2017 2521 7.268212 AGGAATGGATGTATCTAGATGCAAT 57.732 36.000 24.65 12.86 37.00 3.56
2018 2522 7.696981 AGGAATGGATGTATCTAGATGCAATT 58.303 34.615 24.65 19.35 37.00 2.32
2019 2523 8.168725 AGGAATGGATGTATCTAGATGCAATTT 58.831 33.333 24.65 15.78 37.00 1.82
2020 2524 9.453572 GGAATGGATGTATCTAGATGCAATTTA 57.546 33.333 24.65 13.22 37.00 1.40
2024 2528 9.494271 TGGATGTATCTAGATGCAATTTAGTTC 57.506 33.333 24.65 15.95 37.00 3.01
2025 2529 9.717942 GGATGTATCTAGATGCAATTTAGTTCT 57.282 33.333 24.65 7.43 37.00 3.01
2034 2538 8.894768 AGATGCAATTTAGTTCTAGATACACC 57.105 34.615 0.00 0.00 0.00 4.16
2035 2539 7.934120 AGATGCAATTTAGTTCTAGATACACCC 59.066 37.037 0.00 0.00 0.00 4.61
2036 2540 6.953101 TGCAATTTAGTTCTAGATACACCCA 58.047 36.000 0.00 0.00 0.00 4.51
2037 2541 7.573710 TGCAATTTAGTTCTAGATACACCCAT 58.426 34.615 0.00 0.00 0.00 4.00
2038 2542 8.052748 TGCAATTTAGTTCTAGATACACCCATT 58.947 33.333 0.00 0.00 0.00 3.16
2039 2543 8.903820 GCAATTTAGTTCTAGATACACCCATTT 58.096 33.333 0.00 0.00 0.00 2.32
2045 2549 8.738645 AGTTCTAGATACACCCATTTTCATTC 57.261 34.615 0.00 0.00 0.00 2.67
2046 2550 8.328758 AGTTCTAGATACACCCATTTTCATTCA 58.671 33.333 0.00 0.00 0.00 2.57
2047 2551 9.125026 GTTCTAGATACACCCATTTTCATTCAT 57.875 33.333 0.00 0.00 0.00 2.57
2048 2552 9.699410 TTCTAGATACACCCATTTTCATTCATT 57.301 29.630 0.00 0.00 0.00 2.57
2049 2553 9.699410 TCTAGATACACCCATTTTCATTCATTT 57.301 29.630 0.00 0.00 0.00 2.32
2050 2554 9.956720 CTAGATACACCCATTTTCATTCATTTC 57.043 33.333 0.00 0.00 0.00 2.17
2051 2555 8.599624 AGATACACCCATTTTCATTCATTTCT 57.400 30.769 0.00 0.00 0.00 2.52
2052 2556 9.699410 AGATACACCCATTTTCATTCATTTCTA 57.301 29.630 0.00 0.00 0.00 2.10
2053 2557 9.736023 GATACACCCATTTTCATTCATTTCTAC 57.264 33.333 0.00 0.00 0.00 2.59
2054 2558 6.620678 ACACCCATTTTCATTCATTTCTACG 58.379 36.000 0.00 0.00 0.00 3.51
2055 2559 6.432783 ACACCCATTTTCATTCATTTCTACGA 59.567 34.615 0.00 0.00 0.00 3.43
2056 2560 6.747280 CACCCATTTTCATTCATTTCTACGAC 59.253 38.462 0.00 0.00 0.00 4.34
2057 2561 6.432783 ACCCATTTTCATTCATTTCTACGACA 59.567 34.615 0.00 0.00 0.00 4.35
2058 2562 7.040062 ACCCATTTTCATTCATTTCTACGACAA 60.040 33.333 0.00 0.00 0.00 3.18
2059 2563 7.485913 CCCATTTTCATTCATTTCTACGACAAG 59.514 37.037 0.00 0.00 0.00 3.16
2060 2564 8.023128 CCATTTTCATTCATTTCTACGACAAGT 58.977 33.333 0.00 0.00 0.00 3.16
2066 2570 8.879759 TCATTCATTTCTACGACAAGTATTTCC 58.120 33.333 0.00 0.00 34.34 3.13
2067 2571 6.880822 TCATTTCTACGACAAGTATTTCCG 57.119 37.500 0.00 0.00 34.34 4.30
2068 2572 5.808540 TCATTTCTACGACAAGTATTTCCGG 59.191 40.000 0.00 0.00 34.34 5.14
2069 2573 5.389859 TTTCTACGACAAGTATTTCCGGA 57.610 39.130 0.00 0.00 34.34 5.14
2070 2574 4.361451 TCTACGACAAGTATTTCCGGAC 57.639 45.455 1.83 0.00 34.34 4.79
2071 2575 1.986698 ACGACAAGTATTTCCGGACG 58.013 50.000 1.83 3.25 0.00 4.79
2072 2576 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
2073 2577 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
2074 2578 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2075 2579 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2247 2751 6.463995 TTGGAGACACAAGCTTGTAATTTT 57.536 33.333 30.67 13.76 42.67 1.82
2843 3350 2.094906 CACAAAGGGTCATCAGTGCATG 60.095 50.000 0.00 0.00 0.00 4.06
3751 4261 6.882656 ACATGAAGCTCTATGTGAGTACATT 58.117 36.000 13.25 0.00 45.01 2.71
4105 4615 6.885918 TGTCTGAAGATGAAATTGCAGGATTA 59.114 34.615 0.00 0.00 0.00 1.75
4255 4765 9.037737 GCGGTAACTGTTCTAACATATTTATCA 57.962 33.333 0.00 0.00 38.41 2.15
4503 5015 7.172190 GGAGGGAGTACTGTTTACTTGTAAAAC 59.828 40.741 0.00 3.44 37.35 2.43
4598 5110 3.819368 TCATGTTCTGGCAAAAGACTGA 58.181 40.909 0.00 0.00 0.00 3.41
4620 5132 7.343316 ACTGAACTTGAGGAGTATTAGCTGTAT 59.657 37.037 0.00 0.00 37.72 2.29
4621 5133 8.079211 TGAACTTGAGGAGTATTAGCTGTATT 57.921 34.615 0.00 0.00 37.72 1.89
4622 5134 7.981789 TGAACTTGAGGAGTATTAGCTGTATTG 59.018 37.037 0.00 0.00 37.72 1.90
4623 5135 7.425224 ACTTGAGGAGTATTAGCTGTATTGT 57.575 36.000 0.00 0.00 36.65 2.71
4624 5136 8.534954 ACTTGAGGAGTATTAGCTGTATTGTA 57.465 34.615 0.00 0.00 36.65 2.41
4625 5137 9.148879 ACTTGAGGAGTATTAGCTGTATTGTAT 57.851 33.333 0.00 0.00 36.65 2.29
4626 5138 9.988815 CTTGAGGAGTATTAGCTGTATTGTATT 57.011 33.333 0.00 0.00 0.00 1.89
4829 6930 4.506255 AGCCCAGGCCCATTACGC 62.506 66.667 4.70 0.00 43.17 4.42
4876 6977 4.088634 TGTTCATTAGGCCTTGCTTGAAT 58.911 39.130 12.58 0.00 0.00 2.57
4890 6991 6.971184 CCTTGCTTGAATGAAGATATGTGTTC 59.029 38.462 0.00 0.00 32.82 3.18
5406 7511 4.809193 AGTGCCTTACTCCTCATCAGATA 58.191 43.478 0.00 0.00 33.17 1.98
5467 7572 1.679680 CCCCAGTCATTTGCTATGCTG 59.320 52.381 12.33 12.33 0.00 4.41
5638 7743 3.261390 TGCCATTTTTCAATCAGAAGGGG 59.739 43.478 0.00 0.00 37.57 4.79
5655 7923 1.407437 GGGGTCACCATGCTTGTAGAG 60.407 57.143 0.00 0.00 39.85 2.43
5999 8381 7.720957 CCATGTTGGTCCTCATAATTCTTATGA 59.279 37.037 8.77 8.77 40.11 2.15
6116 8498 4.922692 GCATCAACACCATTCAATCGAAAA 59.077 37.500 0.00 0.00 34.01 2.29
6158 8544 6.310941 TCCATCCCAAAATAAGTGACTCAAA 58.689 36.000 0.00 0.00 0.00 2.69
6286 8730 6.246332 GCTTTTTGTTTTGCGAGAAAACTTTC 59.754 34.615 18.45 0.00 39.97 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 1.063942 TCCAGAGGATAGCGACAAGGA 60.064 52.381 0.00 0.00 0.00 3.36
223 224 4.827087 CCGCTGCAGGACGAGCAT 62.827 66.667 17.12 0.00 41.82 3.79
243 244 4.760047 CTCTGTTGACCCCGCCGG 62.760 72.222 0.00 0.00 37.81 6.13
245 246 3.842925 TTGCTCTGTTGACCCCGCC 62.843 63.158 0.00 0.00 0.00 6.13
246 247 2.281484 TTGCTCTGTTGACCCCGC 60.281 61.111 0.00 0.00 0.00 6.13
247 248 1.227823 TGTTGCTCTGTTGACCCCG 60.228 57.895 0.00 0.00 0.00 5.73
248 249 1.507141 CGTGTTGCTCTGTTGACCCC 61.507 60.000 0.00 0.00 0.00 4.95
249 250 1.941812 CGTGTTGCTCTGTTGACCC 59.058 57.895 0.00 0.00 0.00 4.46
250 251 1.279840 GCGTGTTGCTCTGTTGACC 59.720 57.895 0.00 0.00 41.73 4.02
251 252 4.901627 GCGTGTTGCTCTGTTGAC 57.098 55.556 0.00 0.00 41.73 3.18
260 261 4.043200 GGCCCAAGAGCGTGTTGC 62.043 66.667 0.00 0.00 46.98 4.17
261 262 3.365265 GGGCCCAAGAGCGTGTTG 61.365 66.667 19.95 0.00 0.00 3.33
268 269 4.659172 TTGGTGCGGGCCCAAGAG 62.659 66.667 24.92 6.26 37.05 2.85
269 270 4.966787 GTTGGTGCGGGCCCAAGA 62.967 66.667 24.92 0.31 42.44 3.02
325 413 2.932736 CTACGAGGGAGGGGCCTA 59.067 66.667 0.84 0.00 36.66 3.93
404 492 1.827344 CAGGTGACTACTGCATCAGGA 59.173 52.381 0.00 0.00 40.21 3.86
409 497 1.644509 TGACCAGGTGACTACTGCAT 58.355 50.000 0.00 0.00 40.21 3.96
421 509 2.282462 AGCCGGCTTTTGACCAGG 60.282 61.111 27.08 0.00 0.00 4.45
560 654 2.467826 GCATCCCAGAGCAAGACGC 61.468 63.158 0.00 0.00 42.91 5.19
574 781 3.984193 AAGCGGGCAGAGTGGCATC 62.984 63.158 2.66 0.00 45.76 3.91
592 799 4.742201 GCAGGAAGCGACGCAGGA 62.742 66.667 23.70 0.00 0.00 3.86
611 818 2.882876 GCAGGAAGCGACGTAGGA 59.117 61.111 0.00 0.00 0.00 2.94
628 835 4.164664 TGTACCGCGCGTAGGACG 62.165 66.667 29.95 14.69 45.88 4.79
629 836 1.705337 TACTGTACCGCGCGTAGGAC 61.705 60.000 29.95 21.21 0.00 3.85
631 838 0.590732 CTTACTGTACCGCGCGTAGG 60.591 60.000 29.95 16.31 0.00 3.18
642 867 7.175797 TCTCTGTCAATTCCTCTCTTACTGTA 58.824 38.462 0.00 0.00 0.00 2.74
710 1211 2.538939 GGTCGGATAATTTGCGTGCTTC 60.539 50.000 0.00 0.00 40.49 3.86
713 1214 0.730265 TGGTCGGATAATTTGCGTGC 59.270 50.000 0.00 0.00 40.49 5.34
1204 1707 3.618855 TTGGGTCGGAGGAGGGAGG 62.619 68.421 0.00 0.00 0.00 4.30
1221 1724 1.339929 CGCTTTACCTTGGGCTTGTTT 59.660 47.619 0.00 0.00 0.00 2.83
1290 1793 0.975040 AGAGGTCCTTGATGCGCTCT 60.975 55.000 9.73 0.00 0.00 4.09
1898 2402 3.754965 AGTGCACCAATACAACACATCT 58.245 40.909 14.63 0.00 33.69 2.90
1960 2464 0.816825 TCGGACGGAGGGAGTATTCG 60.817 60.000 0.00 0.00 0.00 3.34
1961 2465 1.396653 TTCGGACGGAGGGAGTATTC 58.603 55.000 0.00 0.00 0.00 1.75
1962 2466 1.856629 TTTCGGACGGAGGGAGTATT 58.143 50.000 0.00 0.00 0.00 1.89
1963 2467 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
1964 2468 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
1965 2469 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
1966 2470 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
1967 2471 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
1968 2472 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1969 2473 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1970 2474 2.597305 CGACAAGTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1971 2475 2.598589 CGACAAGTATTTTCGGACGGA 58.401 47.619 0.00 0.00 0.00 4.69
1977 2481 4.034048 CCATTCCTCCGACAAGTATTTTCG 59.966 45.833 0.00 0.00 0.00 3.46
1978 2482 5.183228 TCCATTCCTCCGACAAGTATTTTC 58.817 41.667 0.00 0.00 0.00 2.29
1979 2483 5.174037 TCCATTCCTCCGACAAGTATTTT 57.826 39.130 0.00 0.00 0.00 1.82
1980 2484 4.837093 TCCATTCCTCCGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
1981 2485 4.164221 ACATCCATTCCTCCGACAAGTATT 59.836 41.667 0.00 0.00 0.00 1.89
1982 2486 3.711704 ACATCCATTCCTCCGACAAGTAT 59.288 43.478 0.00 0.00 0.00 2.12
1983 2487 3.104512 ACATCCATTCCTCCGACAAGTA 58.895 45.455 0.00 0.00 0.00 2.24
1984 2488 1.909302 ACATCCATTCCTCCGACAAGT 59.091 47.619 0.00 0.00 0.00 3.16
1985 2489 2.698855 ACATCCATTCCTCCGACAAG 57.301 50.000 0.00 0.00 0.00 3.16
1986 2490 3.967326 AGATACATCCATTCCTCCGACAA 59.033 43.478 0.00 0.00 0.00 3.18
1987 2491 3.576861 AGATACATCCATTCCTCCGACA 58.423 45.455 0.00 0.00 0.00 4.35
1988 2492 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
1989 2493 5.256806 TCTAGATACATCCATTCCTCCGA 57.743 43.478 0.00 0.00 0.00 4.55
1990 2494 5.680922 GCATCTAGATACATCCATTCCTCCG 60.681 48.000 4.54 0.00 0.00 4.63
1991 2495 5.188555 TGCATCTAGATACATCCATTCCTCC 59.811 44.000 4.54 0.00 0.00 4.30
1992 2496 6.291648 TGCATCTAGATACATCCATTCCTC 57.708 41.667 4.54 0.00 0.00 3.71
1993 2497 6.692849 TTGCATCTAGATACATCCATTCCT 57.307 37.500 4.54 0.00 0.00 3.36
1994 2498 7.934855 AATTGCATCTAGATACATCCATTCC 57.065 36.000 4.54 0.00 0.00 3.01
1998 2502 9.494271 GAACTAAATTGCATCTAGATACATCCA 57.506 33.333 4.54 0.00 0.00 3.41
1999 2503 9.717942 AGAACTAAATTGCATCTAGATACATCC 57.282 33.333 4.54 0.00 0.00 3.51
2008 2512 9.982651 GGTGTATCTAGAACTAAATTGCATCTA 57.017 33.333 0.00 0.00 0.00 1.98
2009 2513 7.934120 GGGTGTATCTAGAACTAAATTGCATCT 59.066 37.037 0.00 0.00 0.00 2.90
2010 2514 7.715249 TGGGTGTATCTAGAACTAAATTGCATC 59.285 37.037 0.00 0.00 0.00 3.91
2011 2515 7.573710 TGGGTGTATCTAGAACTAAATTGCAT 58.426 34.615 0.00 0.00 0.00 3.96
2012 2516 6.953101 TGGGTGTATCTAGAACTAAATTGCA 58.047 36.000 0.00 0.00 0.00 4.08
2013 2517 8.451908 AATGGGTGTATCTAGAACTAAATTGC 57.548 34.615 0.00 0.00 0.00 3.56
2019 2523 9.832445 GAATGAAAATGGGTGTATCTAGAACTA 57.168 33.333 0.00 0.00 0.00 2.24
2020 2524 8.328758 TGAATGAAAATGGGTGTATCTAGAACT 58.671 33.333 0.00 0.00 0.00 3.01
2021 2525 8.506168 TGAATGAAAATGGGTGTATCTAGAAC 57.494 34.615 0.00 0.00 0.00 3.01
2022 2526 9.699410 AATGAATGAAAATGGGTGTATCTAGAA 57.301 29.630 0.00 0.00 0.00 2.10
2023 2527 9.699410 AAATGAATGAAAATGGGTGTATCTAGA 57.301 29.630 0.00 0.00 0.00 2.43
2024 2528 9.956720 GAAATGAATGAAAATGGGTGTATCTAG 57.043 33.333 0.00 0.00 0.00 2.43
2025 2529 9.699410 AGAAATGAATGAAAATGGGTGTATCTA 57.301 29.630 0.00 0.00 0.00 1.98
2026 2530 8.599624 AGAAATGAATGAAAATGGGTGTATCT 57.400 30.769 0.00 0.00 0.00 1.98
2027 2531 9.736023 GTAGAAATGAATGAAAATGGGTGTATC 57.264 33.333 0.00 0.00 0.00 2.24
2028 2532 8.405531 CGTAGAAATGAATGAAAATGGGTGTAT 58.594 33.333 0.00 0.00 0.00 2.29
2029 2533 7.608376 TCGTAGAAATGAATGAAAATGGGTGTA 59.392 33.333 0.00 0.00 0.00 2.90
2030 2534 6.432783 TCGTAGAAATGAATGAAAATGGGTGT 59.567 34.615 0.00 0.00 0.00 4.16
2031 2535 6.747280 GTCGTAGAAATGAATGAAAATGGGTG 59.253 38.462 0.00 0.00 39.69 4.61
2032 2536 6.432783 TGTCGTAGAAATGAATGAAAATGGGT 59.567 34.615 0.00 0.00 39.69 4.51
2033 2537 6.851609 TGTCGTAGAAATGAATGAAAATGGG 58.148 36.000 0.00 0.00 39.69 4.00
2034 2538 8.023128 ACTTGTCGTAGAAATGAATGAAAATGG 58.977 33.333 0.00 0.00 39.69 3.16
2035 2539 8.955061 ACTTGTCGTAGAAATGAATGAAAATG 57.045 30.769 0.00 0.00 39.69 2.32
2040 2544 8.879759 GGAAATACTTGTCGTAGAAATGAATGA 58.120 33.333 0.00 0.00 39.69 2.57
2041 2545 7.846107 CGGAAATACTTGTCGTAGAAATGAATG 59.154 37.037 0.00 0.00 39.69 2.67
2042 2546 7.011109 CCGGAAATACTTGTCGTAGAAATGAAT 59.989 37.037 0.00 0.00 39.69 2.57
2043 2547 6.311935 CCGGAAATACTTGTCGTAGAAATGAA 59.688 38.462 0.00 0.00 39.69 2.57
2044 2548 5.808540 CCGGAAATACTTGTCGTAGAAATGA 59.191 40.000 0.00 0.00 39.69 2.57
2045 2549 5.808540 TCCGGAAATACTTGTCGTAGAAATG 59.191 40.000 0.00 0.00 39.69 2.32
2046 2550 5.809051 GTCCGGAAATACTTGTCGTAGAAAT 59.191 40.000 5.23 0.00 39.69 2.17
2047 2551 5.163513 GTCCGGAAATACTTGTCGTAGAAA 58.836 41.667 5.23 0.00 39.69 2.52
2048 2552 4.672542 CGTCCGGAAATACTTGTCGTAGAA 60.673 45.833 5.23 0.00 39.69 2.10
2049 2553 3.181507 CGTCCGGAAATACTTGTCGTAGA 60.182 47.826 5.23 0.00 0.00 2.59
2050 2554 3.103738 CGTCCGGAAATACTTGTCGTAG 58.896 50.000 5.23 0.00 0.00 3.51
2051 2555 2.159393 CCGTCCGGAAATACTTGTCGTA 60.159 50.000 5.23 0.00 37.50 3.43
2052 2556 1.403249 CCGTCCGGAAATACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
2053 2557 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2054 2558 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2055 2559 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2056 2560 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2057 2561 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2058 2562 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2059 2563 0.826062 TTCCCTCCGTCCGGAAATAC 59.174 55.000 5.23 0.00 44.66 1.89
2060 2564 1.797320 ATTCCCTCCGTCCGGAAATA 58.203 50.000 5.23 0.00 44.66 1.40
2061 2565 1.415289 GTATTCCCTCCGTCCGGAAAT 59.585 52.381 5.23 9.21 44.66 2.17
2062 2566 0.826062 GTATTCCCTCCGTCCGGAAA 59.174 55.000 5.23 1.92 44.66 3.13
2063 2567 0.032813 AGTATTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
2064 2568 0.846015 TAGTATTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
2065 2569 1.920610 ATAGTATTCCCTCCGTCCGG 58.079 55.000 0.00 0.00 0.00 5.14
2066 2570 2.626743 ACAATAGTATTCCCTCCGTCCG 59.373 50.000 0.00 0.00 0.00 4.79
2067 2571 3.802675 GCACAATAGTATTCCCTCCGTCC 60.803 52.174 0.00 0.00 0.00 4.79
2068 2572 3.069729 AGCACAATAGTATTCCCTCCGTC 59.930 47.826 0.00 0.00 0.00 4.79
2069 2573 3.039011 AGCACAATAGTATTCCCTCCGT 58.961 45.455 0.00 0.00 0.00 4.69
2070 2574 3.753294 AGCACAATAGTATTCCCTCCG 57.247 47.619 0.00 0.00 0.00 4.63
2071 2575 5.540719 AGTCTAGCACAATAGTATTCCCTCC 59.459 44.000 0.00 0.00 0.00 4.30
2072 2576 6.451393 CAGTCTAGCACAATAGTATTCCCTC 58.549 44.000 0.00 0.00 0.00 4.30
2073 2577 5.221541 GCAGTCTAGCACAATAGTATTCCCT 60.222 44.000 0.00 0.00 0.00 4.20
2074 2578 4.991687 GCAGTCTAGCACAATAGTATTCCC 59.008 45.833 0.00 0.00 0.00 3.97
2075 2579 5.848406 AGCAGTCTAGCACAATAGTATTCC 58.152 41.667 0.00 0.00 36.85 3.01
2247 2751 7.801315 GTGCAACGACATAAATTAAGTTCTCAA 59.199 33.333 0.00 0.00 0.00 3.02
2268 2772 8.458843 GCCAAATTACTCTTATCTAAAGTGCAA 58.541 33.333 0.00 0.00 0.00 4.08
2747 3254 4.754618 TCAAACGAGTACTGTGCATTTGAT 59.245 37.500 0.00 0.00 31.51 2.57
3118 3626 1.681264 CAAAAGCCGGAACAGAAAGGT 59.319 47.619 5.05 0.00 0.00 3.50
3517 4027 9.295825 ACTGTCAATATTGTGTAAAAGGATGAA 57.704 29.630 14.97 0.00 0.00 2.57
3751 4261 2.225491 GCGAAGTGGTGTTTATGCTTCA 59.775 45.455 0.00 0.00 36.34 3.02
4105 4615 5.240891 TCGAGCATTTTGAACATCTCTCTT 58.759 37.500 0.00 0.00 0.00 2.85
4255 4765 3.573538 TGAAAATACAAGTGCCATGCTGT 59.426 39.130 0.00 0.00 0.00 4.40
4306 4816 4.662278 AGCTTGTAGGGCTTGATAACAAA 58.338 39.130 0.00 0.00 36.56 2.83
4476 4988 4.228824 ACAAGTAAACAGTACTCCCTCCA 58.771 43.478 0.00 0.00 0.00 3.86
4503 5015 8.586570 AGAAGAAATACAAGAGCTTATGATCG 57.413 34.615 6.69 0.00 33.18 3.69
4598 5110 7.852263 ACAATACAGCTAATACTCCTCAAGTT 58.148 34.615 0.00 0.00 39.55 2.66
4829 6930 8.815189 CATGTCTCATGTCTAATTGTTAGAGTG 58.185 37.037 0.00 3.60 42.56 3.51
4876 6977 7.884257 TGAAAATTGCAGAACACATATCTTCA 58.116 30.769 0.00 0.00 0.00 3.02
4890 6991 3.996150 ATATCCGCCTGAAAATTGCAG 57.004 42.857 0.00 0.00 0.00 4.41
5209 7314 5.966636 CAAATTCATTGTAGTCGATCCGA 57.033 39.130 0.00 0.00 34.16 4.55
5467 7572 2.435805 TCCTTCAGGCCACACTATCATC 59.564 50.000 5.01 0.00 34.44 2.92
5638 7743 1.734465 GCACTCTACAAGCATGGTGAC 59.266 52.381 0.00 0.00 0.00 3.67
5655 7923 7.492020 TGAAATGCCAAAATTAGATACATGCAC 59.508 33.333 0.00 0.00 0.00 4.57
6116 8498 8.186985 TGGGATGGAGGAGTATCTAATATTTCT 58.813 37.037 0.00 0.00 33.73 2.52
6158 8544 9.828852 TCGTAAAATAAAAAGCACGATACAAAT 57.171 25.926 0.00 0.00 33.88 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.