Multiple sequence alignment - TraesCS2B01G268500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G268500 chr2B 100.000 2544 0 0 1 2544 363486008 363483465 0.000000e+00 4698.0
1 TraesCS2B01G268500 chr2D 96.897 2159 50 10 1 2144 298838812 298840968 0.000000e+00 3600.0
2 TraesCS2B01G268500 chr2A 93.937 1270 43 14 895 2145 372373556 372374810 0.000000e+00 1888.0
3 TraesCS2B01G268500 chr2A 94.921 886 30 8 1 882 372372639 372373513 0.000000e+00 1373.0
4 TraesCS2B01G268500 chr2A 83.469 369 47 12 538 902 770712135 770712493 5.250000e-87 331.0
5 TraesCS2B01G268500 chr1A 80.494 851 117 31 901 1712 584357656 584356816 7.780000e-170 606.0
6 TraesCS2B01G268500 chr1D 79.505 849 125 31 909 1742 486858757 486857943 2.210000e-155 558.0
7 TraesCS2B01G268500 chr1B 79.191 841 129 21 901 1711 677908669 677907845 2.230000e-150 542.0
8 TraesCS2B01G268500 chr1B 78.390 907 128 38 947 1827 677988035 677987171 6.230000e-146 527.0
9 TraesCS2B01G268500 chr1B 92.063 63 4 1 2193 2254 679086484 679086422 1.250000e-13 87.9
10 TraesCS2B01G268500 chr7D 86.196 326 37 8 580 901 538352203 538352524 1.870000e-91 346.0
11 TraesCS2B01G268500 chr6B 84.507 355 50 3 538 891 640951530 640951880 1.870000e-91 346.0
12 TraesCS2B01G268500 chr7B 83.880 366 44 13 538 896 690237888 690238245 4.060000e-88 335.0
13 TraesCS2B01G268500 chr3B 84.286 350 48 6 556 901 42739169 42738823 4.060000e-88 335.0
14 TraesCS2B01G268500 chr3B 90.278 72 6 1 2192 2262 77696731 77696802 2.690000e-15 93.5
15 TraesCS2B01G268500 chr3B 95.652 46 2 0 2226 2271 50904964 50905009 9.760000e-10 75.0
16 TraesCS2B01G268500 chr4D 84.478 335 48 3 552 885 336983257 336982926 6.790000e-86 327.0
17 TraesCS2B01G268500 chrUn 83.333 360 47 11 538 891 85460403 85460051 1.140000e-83 320.0
18 TraesCS2B01G268500 chr3D 90.361 83 7 1 2190 2271 16509397 16509315 9.620000e-20 108.0
19 TraesCS2B01G268500 chr3D 84.884 86 9 4 2186 2269 587581827 587581744 1.620000e-12 84.2
20 TraesCS2B01G268500 chr3D 83.721 86 12 2 2186 2269 568170322 568170407 2.100000e-11 80.5
21 TraesCS2B01G268500 chr3A 87.952 83 9 1 2190 2271 80223559 80223641 2.080000e-16 97.1
22 TraesCS2B01G268500 chr5B 88.000 75 7 1 2191 2265 337166436 337166364 1.250000e-13 87.9
23 TraesCS2B01G268500 chr5B 81.944 72 12 1 2190 2260 557528277 557528348 2.730000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G268500 chr2B 363483465 363486008 2543 True 4698.0 4698 100.000 1 2544 1 chr2B.!!$R1 2543
1 TraesCS2B01G268500 chr2D 298838812 298840968 2156 False 3600.0 3600 96.897 1 2144 1 chr2D.!!$F1 2143
2 TraesCS2B01G268500 chr2A 372372639 372374810 2171 False 1630.5 1888 94.429 1 2145 2 chr2A.!!$F2 2144
3 TraesCS2B01G268500 chr1A 584356816 584357656 840 True 606.0 606 80.494 901 1712 1 chr1A.!!$R1 811
4 TraesCS2B01G268500 chr1D 486857943 486858757 814 True 558.0 558 79.505 909 1742 1 chr1D.!!$R1 833
5 TraesCS2B01G268500 chr1B 677907845 677908669 824 True 542.0 542 79.191 901 1711 1 chr1B.!!$R1 810
6 TraesCS2B01G268500 chr1B 677987171 677988035 864 True 527.0 527 78.390 947 1827 1 chr1B.!!$R2 880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 573 0.106819 GTGCCCAGGCTCATCTTCAT 60.107 55.0 10.58 0.0 42.51 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2194 2292 0.034089 ATTGACAAGTAGCCCCAGCC 60.034 55.0 0.0 0.0 41.25 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
470 472 4.591498 TGTGTTGGGAGAACAGTAGTATGT 59.409 41.667 0.00 0.00 33.96 2.29
571 573 0.106819 GTGCCCAGGCTCATCTTCAT 60.107 55.000 10.58 0.00 42.51 2.57
667 669 1.155424 TTTGGTGCGTGAGGTTCGTC 61.155 55.000 0.00 0.00 0.00 4.20
776 779 5.535030 ACTGTTCCTACCCAATTTGTCTTTC 59.465 40.000 0.00 0.00 0.00 2.62
1274 1334 7.509546 TCAAAACCTGAGAGACATTAGTTTCT 58.490 34.615 0.00 0.00 41.48 2.52
1653 1728 7.615582 TGATCATGTTCTCCAGTTTGTTATC 57.384 36.000 5.42 0.00 0.00 1.75
1697 1782 6.289064 AGTAGTTGTTAACTGAGTTTCCTGG 58.711 40.000 1.97 0.00 42.84 4.45
1773 1858 3.181434 GGTCCATGGGCTCATATTGGTTA 60.181 47.826 17.62 0.00 31.33 2.85
1787 1872 7.821566 TCATATTGGTTAAGGGTCCACATATT 58.178 34.615 0.00 0.00 33.12 1.28
1832 1917 1.945819 GCATTCCCTTTCAGCTCGACA 60.946 52.381 0.00 0.00 0.00 4.35
1854 1947 7.918033 CGACAGATGTGGTGATATCCTATTATC 59.082 40.741 0.00 0.00 0.00 1.75
1889 1982 3.557903 CTGACAGGCTGTGTGGGGG 62.558 68.421 27.45 4.42 40.56 5.40
1910 2003 2.775890 CAGATGGATGTGATGCCTACC 58.224 52.381 0.00 0.00 0.00 3.18
1979 2072 1.638070 TGGAGGCACATAAACCATGGA 59.362 47.619 21.47 0.00 39.13 3.41
1993 2086 4.494091 ACCATGGAGAACTTACATGAGG 57.506 45.455 21.47 7.88 43.46 3.86
2137 2235 2.413634 CGAATAAAACCCCAGCGTTGAC 60.414 50.000 0.00 0.00 0.00 3.18
2145 2243 1.564622 CCAGCGTTGACAAGTCACG 59.435 57.895 0.00 15.68 39.66 4.35
2146 2244 0.874175 CCAGCGTTGACAAGTCACGA 60.874 55.000 20.84 1.08 39.66 4.35
2147 2245 0.504384 CAGCGTTGACAAGTCACGAG 59.496 55.000 20.84 10.25 39.66 4.18
2148 2246 0.384309 AGCGTTGACAAGTCACGAGA 59.616 50.000 20.84 0.00 39.66 4.04
2149 2247 1.202371 AGCGTTGACAAGTCACGAGAA 60.202 47.619 20.84 0.00 39.66 2.87
2150 2248 1.591158 GCGTTGACAAGTCACGAGAAA 59.409 47.619 20.84 0.00 39.66 2.52
2151 2249 2.221055 GCGTTGACAAGTCACGAGAAAT 59.779 45.455 20.84 0.00 39.66 2.17
2152 2250 3.303132 GCGTTGACAAGTCACGAGAAATT 60.303 43.478 20.84 0.00 39.66 1.82
2153 2251 4.203828 CGTTGACAAGTCACGAGAAATTG 58.796 43.478 15.21 7.28 39.66 2.32
2154 2252 4.527564 GTTGACAAGTCACGAGAAATTGG 58.472 43.478 1.73 0.00 39.66 3.16
2155 2253 4.066646 TGACAAGTCACGAGAAATTGGA 57.933 40.909 11.77 0.00 34.14 3.53
2156 2254 4.641396 TGACAAGTCACGAGAAATTGGAT 58.359 39.130 11.77 0.00 34.14 3.41
2157 2255 4.690748 TGACAAGTCACGAGAAATTGGATC 59.309 41.667 11.77 0.00 34.14 3.36
2158 2256 4.899502 ACAAGTCACGAGAAATTGGATCT 58.100 39.130 11.77 0.00 30.73 2.75
2159 2257 5.308825 ACAAGTCACGAGAAATTGGATCTT 58.691 37.500 11.77 0.00 30.73 2.40
2160 2258 5.765182 ACAAGTCACGAGAAATTGGATCTTT 59.235 36.000 11.77 0.00 30.73 2.52
2161 2259 6.263168 ACAAGTCACGAGAAATTGGATCTTTT 59.737 34.615 11.77 0.00 30.73 2.27
2162 2260 6.246420 AGTCACGAGAAATTGGATCTTTTG 57.754 37.500 0.00 0.00 0.00 2.44
2163 2261 4.853743 GTCACGAGAAATTGGATCTTTTGC 59.146 41.667 0.00 0.00 0.00 3.68
2164 2262 4.082787 TCACGAGAAATTGGATCTTTTGCC 60.083 41.667 0.00 0.00 0.00 4.52
2165 2263 3.193479 ACGAGAAATTGGATCTTTTGCCC 59.807 43.478 0.00 0.00 0.00 5.36
2166 2264 3.193267 CGAGAAATTGGATCTTTTGCCCA 59.807 43.478 0.00 0.00 0.00 5.36
2167 2265 4.498241 GAGAAATTGGATCTTTTGCCCAC 58.502 43.478 0.00 0.00 0.00 4.61
2168 2266 4.162651 AGAAATTGGATCTTTTGCCCACT 58.837 39.130 0.00 0.00 0.00 4.00
2169 2267 4.594491 AGAAATTGGATCTTTTGCCCACTT 59.406 37.500 0.00 0.00 0.00 3.16
2170 2268 4.980339 AATTGGATCTTTTGCCCACTTT 57.020 36.364 0.00 0.00 0.00 2.66
2171 2269 4.980339 ATTGGATCTTTTGCCCACTTTT 57.020 36.364 0.00 0.00 0.00 2.27
2172 2270 4.335400 TTGGATCTTTTGCCCACTTTTC 57.665 40.909 0.00 0.00 0.00 2.29
2173 2271 3.575805 TGGATCTTTTGCCCACTTTTCT 58.424 40.909 0.00 0.00 0.00 2.52
2174 2272 3.966665 TGGATCTTTTGCCCACTTTTCTT 59.033 39.130 0.00 0.00 0.00 2.52
2175 2273 4.039124 TGGATCTTTTGCCCACTTTTCTTC 59.961 41.667 0.00 0.00 0.00 2.87
2176 2274 4.281941 GGATCTTTTGCCCACTTTTCTTCT 59.718 41.667 0.00 0.00 0.00 2.85
2177 2275 5.221521 GGATCTTTTGCCCACTTTTCTTCTT 60.222 40.000 0.00 0.00 0.00 2.52
2178 2276 6.015434 GGATCTTTTGCCCACTTTTCTTCTTA 60.015 38.462 0.00 0.00 0.00 2.10
2179 2277 6.144078 TCTTTTGCCCACTTTTCTTCTTAC 57.856 37.500 0.00 0.00 0.00 2.34
2180 2278 5.891551 TCTTTTGCCCACTTTTCTTCTTACT 59.108 36.000 0.00 0.00 0.00 2.24
2181 2279 6.379988 TCTTTTGCCCACTTTTCTTCTTACTT 59.620 34.615 0.00 0.00 0.00 2.24
2182 2280 6.538945 TTTGCCCACTTTTCTTCTTACTTT 57.461 33.333 0.00 0.00 0.00 2.66
2183 2281 5.514274 TGCCCACTTTTCTTCTTACTTTG 57.486 39.130 0.00 0.00 0.00 2.77
2184 2282 4.340950 TGCCCACTTTTCTTCTTACTTTGG 59.659 41.667 0.00 0.00 0.00 3.28
2185 2283 4.341235 GCCCACTTTTCTTCTTACTTTGGT 59.659 41.667 0.00 0.00 0.00 3.67
2186 2284 5.736207 GCCCACTTTTCTTCTTACTTTGGTG 60.736 44.000 0.00 0.00 0.00 4.17
2187 2285 5.592688 CCCACTTTTCTTCTTACTTTGGTGA 59.407 40.000 0.00 0.00 0.00 4.02
2188 2286 6.265422 CCCACTTTTCTTCTTACTTTGGTGAT 59.735 38.462 0.00 0.00 0.00 3.06
2189 2287 7.141363 CCACTTTTCTTCTTACTTTGGTGATG 58.859 38.462 0.00 0.00 0.00 3.07
2190 2288 7.141363 CACTTTTCTTCTTACTTTGGTGATGG 58.859 38.462 0.00 0.00 0.00 3.51
2191 2289 6.833933 ACTTTTCTTCTTACTTTGGTGATGGT 59.166 34.615 0.00 0.00 0.00 3.55
2192 2290 6.633500 TTTCTTCTTACTTTGGTGATGGTG 57.367 37.500 0.00 0.00 0.00 4.17
2193 2291 4.651778 TCTTCTTACTTTGGTGATGGTGG 58.348 43.478 0.00 0.00 0.00 4.61
2194 2292 3.433306 TCTTACTTTGGTGATGGTGGG 57.567 47.619 0.00 0.00 0.00 4.61
2195 2293 2.041081 TCTTACTTTGGTGATGGTGGGG 59.959 50.000 0.00 0.00 0.00 4.96
2196 2294 0.039035 TACTTTGGTGATGGTGGGGC 59.961 55.000 0.00 0.00 0.00 5.80
2197 2295 1.077265 CTTTGGTGATGGTGGGGCT 59.923 57.895 0.00 0.00 0.00 5.19
2198 2296 1.228831 TTTGGTGATGGTGGGGCTG 60.229 57.895 0.00 0.00 0.00 4.85
2199 2297 2.728460 TTTGGTGATGGTGGGGCTGG 62.728 60.000 0.00 0.00 0.00 4.85
2200 2298 4.447342 GGTGATGGTGGGGCTGGG 62.447 72.222 0.00 0.00 0.00 4.45
2201 2299 4.447342 GTGATGGTGGGGCTGGGG 62.447 72.222 0.00 0.00 0.00 4.96
2204 2302 4.777546 ATGGTGGGGCTGGGGCTA 62.778 66.667 0.00 0.00 38.73 3.93
2207 2305 3.339093 GTGGGGCTGGGGCTACTT 61.339 66.667 0.00 0.00 38.73 2.24
2208 2306 3.338250 TGGGGCTGGGGCTACTTG 61.338 66.667 0.00 0.00 38.73 3.16
2209 2307 3.339093 GGGGCTGGGGCTACTTGT 61.339 66.667 0.00 0.00 38.73 3.16
2210 2308 2.272471 GGGCTGGGGCTACTTGTC 59.728 66.667 0.00 0.00 38.73 3.18
2211 2309 2.602676 GGGCTGGGGCTACTTGTCA 61.603 63.158 0.00 0.00 38.73 3.58
2212 2310 1.378762 GGCTGGGGCTACTTGTCAA 59.621 57.895 0.00 0.00 38.73 3.18
2213 2311 0.034089 GGCTGGGGCTACTTGTCAAT 60.034 55.000 0.00 0.00 38.73 2.57
2214 2312 1.098050 GCTGGGGCTACTTGTCAATG 58.902 55.000 0.00 0.00 35.22 2.82
2215 2313 1.340017 GCTGGGGCTACTTGTCAATGA 60.340 52.381 0.00 0.00 35.22 2.57
2216 2314 2.636830 CTGGGGCTACTTGTCAATGAG 58.363 52.381 0.00 0.00 0.00 2.90
2217 2315 2.237143 CTGGGGCTACTTGTCAATGAGA 59.763 50.000 0.00 0.00 0.00 3.27
2228 2326 3.221964 GTCAATGAGACAAACATGGGC 57.778 47.619 0.00 0.00 46.77 5.36
2229 2327 2.557924 GTCAATGAGACAAACATGGGCA 59.442 45.455 0.00 0.00 46.77 5.36
2230 2328 3.005684 GTCAATGAGACAAACATGGGCAA 59.994 43.478 0.00 0.00 46.77 4.52
2231 2329 3.640498 TCAATGAGACAAACATGGGCAAA 59.360 39.130 0.00 0.00 0.00 3.68
2232 2330 4.283978 TCAATGAGACAAACATGGGCAAAT 59.716 37.500 0.00 0.00 0.00 2.32
2233 2331 3.940209 TGAGACAAACATGGGCAAATC 57.060 42.857 0.00 0.00 0.00 2.17
2234 2332 3.229293 TGAGACAAACATGGGCAAATCA 58.771 40.909 0.00 0.00 0.00 2.57
2235 2333 3.833650 TGAGACAAACATGGGCAAATCAT 59.166 39.130 0.00 0.00 0.00 2.45
2236 2334 4.082081 TGAGACAAACATGGGCAAATCATC 60.082 41.667 0.00 0.00 0.00 2.92
2237 2335 3.833650 AGACAAACATGGGCAAATCATCA 59.166 39.130 0.00 0.00 0.00 3.07
2238 2336 4.283978 AGACAAACATGGGCAAATCATCAA 59.716 37.500 0.00 0.00 0.00 2.57
2239 2337 4.970711 ACAAACATGGGCAAATCATCAAA 58.029 34.783 0.00 0.00 0.00 2.69
2240 2338 4.756135 ACAAACATGGGCAAATCATCAAAC 59.244 37.500 0.00 0.00 0.00 2.93
2241 2339 3.615224 ACATGGGCAAATCATCAAACC 57.385 42.857 0.00 0.00 0.00 3.27
2242 2340 2.236893 ACATGGGCAAATCATCAAACCC 59.763 45.455 0.00 0.00 37.88 4.11
2243 2341 1.274712 TGGGCAAATCATCAAACCCC 58.725 50.000 0.00 0.00 36.45 4.95
2244 2342 1.274712 GGGCAAATCATCAAACCCCA 58.725 50.000 0.00 0.00 0.00 4.96
2245 2343 1.839354 GGGCAAATCATCAAACCCCAT 59.161 47.619 0.00 0.00 0.00 4.00
2246 2344 2.420408 GGGCAAATCATCAAACCCCATG 60.420 50.000 0.00 0.00 0.00 3.66
2247 2345 2.236893 GGCAAATCATCAAACCCCATGT 59.763 45.455 0.00 0.00 0.00 3.21
2248 2346 3.450457 GGCAAATCATCAAACCCCATGTA 59.550 43.478 0.00 0.00 0.00 2.29
2249 2347 4.081198 GGCAAATCATCAAACCCCATGTAA 60.081 41.667 0.00 0.00 0.00 2.41
2250 2348 5.486526 GCAAATCATCAAACCCCATGTAAA 58.513 37.500 0.00 0.00 0.00 2.01
2251 2349 5.581874 GCAAATCATCAAACCCCATGTAAAG 59.418 40.000 0.00 0.00 0.00 1.85
2252 2350 6.700352 CAAATCATCAAACCCCATGTAAAGT 58.300 36.000 0.00 0.00 0.00 2.66
2253 2351 5.920193 ATCATCAAACCCCATGTAAAGTG 57.080 39.130 0.00 0.00 0.00 3.16
2254 2352 4.991776 TCATCAAACCCCATGTAAAGTGA 58.008 39.130 0.00 0.00 0.00 3.41
2255 2353 5.009631 TCATCAAACCCCATGTAAAGTGAG 58.990 41.667 0.00 0.00 0.00 3.51
2256 2354 3.761897 TCAAACCCCATGTAAAGTGAGG 58.238 45.455 0.00 0.00 0.00 3.86
2257 2355 2.215942 AACCCCATGTAAAGTGAGGC 57.784 50.000 0.00 0.00 0.00 4.70
2258 2356 1.072266 ACCCCATGTAAAGTGAGGCA 58.928 50.000 0.00 0.00 0.00 4.75
2259 2357 1.427368 ACCCCATGTAAAGTGAGGCAA 59.573 47.619 0.00 0.00 0.00 4.52
2260 2358 2.158385 ACCCCATGTAAAGTGAGGCAAA 60.158 45.455 0.00 0.00 0.00 3.68
2261 2359 2.896685 CCCCATGTAAAGTGAGGCAAAA 59.103 45.455 0.00 0.00 0.00 2.44
2262 2360 3.056607 CCCCATGTAAAGTGAGGCAAAAG 60.057 47.826 0.00 0.00 0.00 2.27
2263 2361 3.826157 CCCATGTAAAGTGAGGCAAAAGA 59.174 43.478 0.00 0.00 0.00 2.52
2264 2362 4.463891 CCCATGTAAAGTGAGGCAAAAGAT 59.536 41.667 0.00 0.00 0.00 2.40
2265 2363 5.047092 CCCATGTAAAGTGAGGCAAAAGATT 60.047 40.000 0.00 0.00 0.00 2.40
2266 2364 6.095377 CCATGTAAAGTGAGGCAAAAGATTC 58.905 40.000 0.00 0.00 0.00 2.52
2267 2365 6.294675 CCATGTAAAGTGAGGCAAAAGATTCA 60.295 38.462 0.00 0.00 0.00 2.57
2268 2366 6.707440 TGTAAAGTGAGGCAAAAGATTCAA 57.293 33.333 0.00 0.00 0.00 2.69
2269 2367 7.288810 TGTAAAGTGAGGCAAAAGATTCAAT 57.711 32.000 0.00 0.00 0.00 2.57
2270 2368 7.370383 TGTAAAGTGAGGCAAAAGATTCAATC 58.630 34.615 0.00 0.00 0.00 2.67
2271 2369 6.661304 AAAGTGAGGCAAAAGATTCAATCT 57.339 33.333 0.00 0.00 42.61 2.40
2272 2370 5.893897 AGTGAGGCAAAAGATTCAATCTC 57.106 39.130 0.00 0.00 39.08 2.75
2273 2371 5.319453 AGTGAGGCAAAAGATTCAATCTCA 58.681 37.500 0.00 0.00 39.08 3.27
2274 2372 5.950549 AGTGAGGCAAAAGATTCAATCTCAT 59.049 36.000 0.00 0.00 39.08 2.90
2275 2373 7.114754 AGTGAGGCAAAAGATTCAATCTCATA 58.885 34.615 0.00 0.00 39.08 2.15
2276 2374 7.613022 AGTGAGGCAAAAGATTCAATCTCATAA 59.387 33.333 0.00 0.00 39.08 1.90
2277 2375 7.914346 GTGAGGCAAAAGATTCAATCTCATAAG 59.086 37.037 0.00 0.00 39.08 1.73
2278 2376 6.803642 AGGCAAAAGATTCAATCTCATAAGC 58.196 36.000 0.00 1.52 39.08 3.09
2279 2377 5.684626 GGCAAAAGATTCAATCTCATAAGCG 59.315 40.000 0.00 0.00 39.08 4.68
2280 2378 6.458751 GGCAAAAGATTCAATCTCATAAGCGA 60.459 38.462 0.00 0.00 39.08 4.93
2281 2379 6.968904 GCAAAAGATTCAATCTCATAAGCGAA 59.031 34.615 0.00 0.00 39.08 4.70
2282 2380 7.485913 GCAAAAGATTCAATCTCATAAGCGAAA 59.514 33.333 0.00 0.00 39.08 3.46
2283 2381 9.512435 CAAAAGATTCAATCTCATAAGCGAAAT 57.488 29.630 0.00 0.00 39.08 2.17
2285 2383 9.512435 AAAGATTCAATCTCATAAGCGAAATTG 57.488 29.630 0.00 0.00 39.08 2.32
2286 2384 7.137426 AGATTCAATCTCATAAGCGAAATTGC 58.863 34.615 0.00 0.00 33.42 3.56
2287 2385 5.816449 TCAATCTCATAAGCGAAATTGCA 57.184 34.783 0.00 0.00 37.31 4.08
2288 2386 6.381481 TCAATCTCATAAGCGAAATTGCAT 57.619 33.333 0.00 0.00 37.31 3.96
2289 2387 7.495135 TCAATCTCATAAGCGAAATTGCATA 57.505 32.000 0.00 0.00 37.31 3.14
2290 2388 7.578852 TCAATCTCATAAGCGAAATTGCATAG 58.421 34.615 0.00 0.00 37.31 2.23
2291 2389 5.929697 TCTCATAAGCGAAATTGCATAGG 57.070 39.130 0.00 0.00 37.31 2.57
2292 2390 5.610398 TCTCATAAGCGAAATTGCATAGGA 58.390 37.500 0.00 0.00 37.31 2.94
2293 2391 5.698089 TCTCATAAGCGAAATTGCATAGGAG 59.302 40.000 11.39 11.39 43.99 3.69
2294 2392 4.214119 TCATAAGCGAAATTGCATAGGAGC 59.786 41.667 0.00 0.00 37.31 4.70
2295 2393 2.042686 AGCGAAATTGCATAGGAGCA 57.957 45.000 0.00 0.00 43.99 4.26
2296 2394 1.672881 AGCGAAATTGCATAGGAGCAC 59.327 47.619 0.00 0.00 45.61 4.40
2297 2395 1.268743 GCGAAATTGCATAGGAGCACC 60.269 52.381 0.00 0.00 45.61 5.01
2298 2396 2.292267 CGAAATTGCATAGGAGCACCT 58.708 47.619 8.12 8.12 45.61 4.00
2299 2397 5.623951 GCGAAATTGCATAGGAGCACCTG 62.624 52.174 13.60 0.00 45.61 4.00
2306 2404 4.341783 AGGAGCACCTGCAGGCAC 62.342 66.667 33.06 23.93 45.92 5.01
2307 2405 4.648626 GGAGCACCTGCAGGCACA 62.649 66.667 33.06 0.00 45.16 4.57
2308 2406 3.360340 GAGCACCTGCAGGCACAC 61.360 66.667 33.06 18.91 45.16 3.82
2309 2407 4.962836 AGCACCTGCAGGCACACC 62.963 66.667 33.06 15.66 45.16 4.16
2311 2409 2.670934 CACCTGCAGGCACACCTC 60.671 66.667 33.06 0.00 46.34 3.85
2312 2410 3.958860 ACCTGCAGGCACACCTCC 61.959 66.667 33.06 0.00 46.34 4.30
2313 2411 4.729918 CCTGCAGGCACACCTCCC 62.730 72.222 22.33 0.00 46.34 4.30
2314 2412 3.644606 CTGCAGGCACACCTCCCT 61.645 66.667 5.57 0.00 46.34 4.20
2315 2413 3.914579 CTGCAGGCACACCTCCCTG 62.915 68.421 5.57 2.40 46.34 4.45
2316 2414 3.958860 GCAGGCACACCTCCCTGT 61.959 66.667 8.32 0.00 46.34 4.00
2317 2415 2.839098 CAGGCACACCTCCCTGTT 59.161 61.111 0.00 0.00 46.34 3.16
2318 2416 2.066340 CAGGCACACCTCCCTGTTA 58.934 57.895 0.00 0.00 46.34 2.41
2319 2417 0.620556 CAGGCACACCTCCCTGTTAT 59.379 55.000 0.00 0.00 46.34 1.89
2320 2418 0.912486 AGGCACACCTCCCTGTTATC 59.088 55.000 0.00 0.00 46.34 1.75
2321 2419 0.912486 GGCACACCTCCCTGTTATCT 59.088 55.000 0.00 0.00 0.00 1.98
2322 2420 1.134371 GGCACACCTCCCTGTTATCTC 60.134 57.143 0.00 0.00 0.00 2.75
2323 2421 1.555075 GCACACCTCCCTGTTATCTCA 59.445 52.381 0.00 0.00 0.00 3.27
2324 2422 2.678190 GCACACCTCCCTGTTATCTCAC 60.678 54.545 0.00 0.00 0.00 3.51
2325 2423 2.093447 CACACCTCCCTGTTATCTCACC 60.093 54.545 0.00 0.00 0.00 4.02
2326 2424 2.187958 CACCTCCCTGTTATCTCACCA 58.812 52.381 0.00 0.00 0.00 4.17
2327 2425 2.774234 CACCTCCCTGTTATCTCACCAT 59.226 50.000 0.00 0.00 0.00 3.55
2328 2426 3.200825 CACCTCCCTGTTATCTCACCATT 59.799 47.826 0.00 0.00 0.00 3.16
2329 2427 3.200825 ACCTCCCTGTTATCTCACCATTG 59.799 47.826 0.00 0.00 0.00 2.82
2330 2428 3.455910 CCTCCCTGTTATCTCACCATTGA 59.544 47.826 0.00 0.00 0.00 2.57
2331 2429 4.080356 CCTCCCTGTTATCTCACCATTGAA 60.080 45.833 0.00 0.00 0.00 2.69
2332 2430 4.843728 TCCCTGTTATCTCACCATTGAAC 58.156 43.478 0.00 0.00 0.00 3.18
2333 2431 4.288366 TCCCTGTTATCTCACCATTGAACA 59.712 41.667 0.00 0.00 0.00 3.18
2334 2432 5.044919 TCCCTGTTATCTCACCATTGAACAT 60.045 40.000 0.00 0.00 0.00 2.71
2335 2433 5.066893 CCCTGTTATCTCACCATTGAACATG 59.933 44.000 0.00 0.00 0.00 3.21
2336 2434 5.449588 CCTGTTATCTCACCATTGAACATGC 60.450 44.000 0.00 0.00 0.00 4.06
2337 2435 5.008980 TGTTATCTCACCATTGAACATGCA 58.991 37.500 0.00 0.00 0.00 3.96
2338 2436 5.653330 TGTTATCTCACCATTGAACATGCAT 59.347 36.000 0.00 0.00 0.00 3.96
2339 2437 6.153170 TGTTATCTCACCATTGAACATGCATT 59.847 34.615 0.00 0.00 0.00 3.56
2340 2438 4.443913 TCTCACCATTGAACATGCATTG 57.556 40.909 0.00 0.00 0.00 2.82
2341 2439 3.193903 TCTCACCATTGAACATGCATTGG 59.806 43.478 10.64 10.64 42.27 3.16
2342 2440 2.234168 TCACCATTGAACATGCATTGGG 59.766 45.455 15.51 6.44 41.37 4.12
2343 2441 2.234168 CACCATTGAACATGCATTGGGA 59.766 45.455 15.51 0.00 41.37 4.37
2344 2442 3.109151 ACCATTGAACATGCATTGGGAT 58.891 40.909 15.51 0.00 41.37 3.85
2345 2443 4.099727 CACCATTGAACATGCATTGGGATA 59.900 41.667 15.51 0.00 41.37 2.59
2346 2444 4.903049 ACCATTGAACATGCATTGGGATAT 59.097 37.500 15.51 0.00 41.37 1.63
2347 2445 5.221561 ACCATTGAACATGCATTGGGATATG 60.222 40.000 15.51 7.38 41.37 1.78
2348 2446 5.221561 CCATTGAACATGCATTGGGATATGT 60.222 40.000 0.00 0.00 36.26 2.29
2349 2447 6.015265 CCATTGAACATGCATTGGGATATGTA 60.015 38.462 0.00 0.00 36.26 2.29
2350 2448 6.389830 TTGAACATGCATTGGGATATGTAC 57.610 37.500 0.00 0.00 33.70 2.90
2351 2449 4.826733 TGAACATGCATTGGGATATGTACC 59.173 41.667 0.00 0.00 33.70 3.34
2352 2450 4.451891 ACATGCATTGGGATATGTACCA 57.548 40.909 0.00 0.00 36.18 3.25
2353 2451 4.144297 ACATGCATTGGGATATGTACCAC 58.856 43.478 0.00 0.00 38.37 4.16
2354 2452 4.141181 ACATGCATTGGGATATGTACCACT 60.141 41.667 0.00 0.00 38.37 4.00
2355 2453 5.073008 ACATGCATTGGGATATGTACCACTA 59.927 40.000 0.00 0.00 38.37 2.74
2356 2454 5.841267 TGCATTGGGATATGTACCACTAT 57.159 39.130 0.00 0.00 38.37 2.12
2357 2455 6.943899 TGCATTGGGATATGTACCACTATA 57.056 37.500 0.00 0.00 38.37 1.31
2358 2456 7.509236 TGCATTGGGATATGTACCACTATAT 57.491 36.000 0.00 0.00 38.37 0.86
2359 2457 7.337938 TGCATTGGGATATGTACCACTATATG 58.662 38.462 0.00 0.00 38.37 1.78
2360 2458 7.037658 TGCATTGGGATATGTACCACTATATGT 60.038 37.037 0.00 0.00 38.37 2.29
2361 2459 8.482943 GCATTGGGATATGTACCACTATATGTA 58.517 37.037 0.00 0.00 38.37 2.29
2364 2462 9.777008 TTGGGATATGTACCACTATATGTATGA 57.223 33.333 0.00 0.00 38.37 2.15
2365 2463 9.421399 TGGGATATGTACCACTATATGTATGAG 57.579 37.037 0.00 0.00 31.57 2.90
2366 2464 9.422681 GGGATATGTACCACTATATGTATGAGT 57.577 37.037 0.00 0.00 0.00 3.41
2433 2531 9.720769 TTCTTCAGTTTTAGTCTACTTTATGGG 57.279 33.333 0.00 0.00 0.00 4.00
2434 2532 9.096823 TCTTCAGTTTTAGTCTACTTTATGGGA 57.903 33.333 0.00 0.00 0.00 4.37
2435 2533 9.892130 CTTCAGTTTTAGTCTACTTTATGGGAT 57.108 33.333 0.00 0.00 0.00 3.85
2436 2534 9.667107 TTCAGTTTTAGTCTACTTTATGGGATG 57.333 33.333 0.00 0.00 0.00 3.51
2437 2535 8.822805 TCAGTTTTAGTCTACTTTATGGGATGT 58.177 33.333 0.00 0.00 0.00 3.06
2445 2543 8.865090 AGTCTACTTTATGGGATGTATTCTCTG 58.135 37.037 0.00 0.00 0.00 3.35
2446 2544 7.600752 GTCTACTTTATGGGATGTATTCTCTGC 59.399 40.741 0.00 0.00 0.00 4.26
2447 2545 6.252599 ACTTTATGGGATGTATTCTCTGCA 57.747 37.500 0.00 0.00 0.00 4.41
2448 2546 6.058183 ACTTTATGGGATGTATTCTCTGCAC 58.942 40.000 0.00 0.00 0.00 4.57
2449 2547 5.628797 TTATGGGATGTATTCTCTGCACA 57.371 39.130 0.00 0.00 0.00 4.57
2450 2548 3.998913 TGGGATGTATTCTCTGCACAA 57.001 42.857 0.00 0.00 0.00 3.33
2451 2549 4.508551 TGGGATGTATTCTCTGCACAAT 57.491 40.909 0.00 0.00 0.00 2.71
2452 2550 4.454678 TGGGATGTATTCTCTGCACAATC 58.545 43.478 0.00 0.00 0.00 2.67
2453 2551 4.164796 TGGGATGTATTCTCTGCACAATCT 59.835 41.667 0.00 0.00 0.00 2.40
2454 2552 4.514441 GGGATGTATTCTCTGCACAATCTG 59.486 45.833 0.00 0.00 0.00 2.90
2455 2553 5.121811 GGATGTATTCTCTGCACAATCTGT 58.878 41.667 0.00 0.00 0.00 3.41
2456 2554 5.236047 GGATGTATTCTCTGCACAATCTGTC 59.764 44.000 0.00 0.00 0.00 3.51
2457 2555 4.507710 TGTATTCTCTGCACAATCTGTCC 58.492 43.478 0.00 0.00 0.00 4.02
2458 2556 2.479566 TTCTCTGCACAATCTGTCCC 57.520 50.000 0.00 0.00 0.00 4.46
2459 2557 1.649321 TCTCTGCACAATCTGTCCCT 58.351 50.000 0.00 0.00 0.00 4.20
2460 2558 1.277273 TCTCTGCACAATCTGTCCCTG 59.723 52.381 0.00 0.00 0.00 4.45
2461 2559 1.002888 CTCTGCACAATCTGTCCCTGT 59.997 52.381 0.00 0.00 0.00 4.00
2462 2560 1.002430 TCTGCACAATCTGTCCCTGTC 59.998 52.381 0.00 0.00 0.00 3.51
2463 2561 0.036732 TGCACAATCTGTCCCTGTCC 59.963 55.000 0.00 0.00 0.00 4.02
2464 2562 0.326264 GCACAATCTGTCCCTGTCCT 59.674 55.000 0.00 0.00 0.00 3.85
2465 2563 1.947678 GCACAATCTGTCCCTGTCCTG 60.948 57.143 0.00 0.00 0.00 3.86
2466 2564 0.987294 ACAATCTGTCCCTGTCCTGG 59.013 55.000 0.00 0.00 0.00 4.45
2467 2565 0.393537 CAATCTGTCCCTGTCCTGGC 60.394 60.000 0.00 0.00 0.00 4.85
2468 2566 1.566298 AATCTGTCCCTGTCCTGGCC 61.566 60.000 0.00 0.00 0.00 5.36
2469 2567 3.721706 CTGTCCCTGTCCTGGCCC 61.722 72.222 0.00 0.00 0.00 5.80
2470 2568 4.590553 TGTCCCTGTCCTGGCCCA 62.591 66.667 0.00 0.00 0.00 5.36
2471 2569 4.035102 GTCCCTGTCCTGGCCCAC 62.035 72.222 0.00 0.00 0.00 4.61
2472 2570 4.270153 TCCCTGTCCTGGCCCACT 62.270 66.667 0.00 0.00 0.00 4.00
2473 2571 3.260100 CCCTGTCCTGGCCCACTT 61.260 66.667 0.00 0.00 0.00 3.16
2474 2572 2.034687 CCTGTCCTGGCCCACTTG 59.965 66.667 0.00 0.00 0.00 3.16
2475 2573 2.674380 CTGTCCTGGCCCACTTGC 60.674 66.667 0.00 0.00 0.00 4.01
2476 2574 3.496309 CTGTCCTGGCCCACTTGCA 62.496 63.158 0.00 0.00 0.00 4.08
2477 2575 2.674380 GTCCTGGCCCACTTGCAG 60.674 66.667 0.00 0.00 0.00 4.41
2478 2576 4.666253 TCCTGGCCCACTTGCAGC 62.666 66.667 0.00 0.00 0.00 5.25
2479 2577 4.980702 CCTGGCCCACTTGCAGCA 62.981 66.667 0.00 0.00 0.00 4.41
2480 2578 2.678934 CTGGCCCACTTGCAGCAT 60.679 61.111 0.00 0.00 0.00 3.79
2481 2579 2.992689 TGGCCCACTTGCAGCATG 60.993 61.111 0.00 6.74 40.87 4.06
2494 2592 0.170561 CAGCATGCTTCTGTTCCAGC 59.829 55.000 19.98 0.00 36.49 4.85
2495 2593 0.037877 AGCATGCTTCTGTTCCAGCT 59.962 50.000 16.30 0.00 36.92 4.24
2496 2594 0.450983 GCATGCTTCTGTTCCAGCTC 59.549 55.000 11.37 0.00 36.92 4.09
2497 2595 1.093159 CATGCTTCTGTTCCAGCTCC 58.907 55.000 0.00 0.00 36.92 4.70
2498 2596 0.034670 ATGCTTCTGTTCCAGCTCCC 60.035 55.000 0.00 0.00 36.92 4.30
2499 2597 1.376466 GCTTCTGTTCCAGCTCCCA 59.624 57.895 0.00 0.00 32.87 4.37
2500 2598 0.250901 GCTTCTGTTCCAGCTCCCAA 60.251 55.000 0.00 0.00 32.87 4.12
2501 2599 1.528129 CTTCTGTTCCAGCTCCCAAC 58.472 55.000 0.00 0.00 0.00 3.77
2502 2600 1.072965 CTTCTGTTCCAGCTCCCAACT 59.927 52.381 0.00 0.00 0.00 3.16
2503 2601 2.024176 TCTGTTCCAGCTCCCAACTA 57.976 50.000 0.00 0.00 0.00 2.24
2504 2602 1.623811 TCTGTTCCAGCTCCCAACTAC 59.376 52.381 0.00 0.00 0.00 2.73
2505 2603 0.690762 TGTTCCAGCTCCCAACTACC 59.309 55.000 0.00 0.00 0.00 3.18
2506 2604 0.690762 GTTCCAGCTCCCAACTACCA 59.309 55.000 0.00 0.00 0.00 3.25
2507 2605 1.073284 GTTCCAGCTCCCAACTACCAA 59.927 52.381 0.00 0.00 0.00 3.67
2508 2606 0.690762 TCCAGCTCCCAACTACCAAC 59.309 55.000 0.00 0.00 0.00 3.77
2509 2607 0.400213 CCAGCTCCCAACTACCAACA 59.600 55.000 0.00 0.00 0.00 3.33
2510 2608 1.202879 CCAGCTCCCAACTACCAACAA 60.203 52.381 0.00 0.00 0.00 2.83
2511 2609 1.880027 CAGCTCCCAACTACCAACAAC 59.120 52.381 0.00 0.00 0.00 3.32
2512 2610 1.202891 AGCTCCCAACTACCAACAACC 60.203 52.381 0.00 0.00 0.00 3.77
2513 2611 1.477923 GCTCCCAACTACCAACAACCA 60.478 52.381 0.00 0.00 0.00 3.67
2514 2612 2.817839 GCTCCCAACTACCAACAACCAT 60.818 50.000 0.00 0.00 0.00 3.55
2515 2613 2.819608 CTCCCAACTACCAACAACCATG 59.180 50.000 0.00 0.00 0.00 3.66
2516 2614 1.892474 CCCAACTACCAACAACCATGG 59.108 52.381 11.19 11.19 43.84 3.66
2522 2620 2.650196 CAACAACCATGGTGGCCG 59.350 61.111 20.60 10.16 42.67 6.13
2523 2621 2.600173 AACAACCATGGTGGCCGG 60.600 61.111 20.60 8.59 42.67 6.13
2524 2622 3.444818 AACAACCATGGTGGCCGGT 62.445 57.895 20.60 9.25 42.67 5.28
2525 2623 3.372730 CAACCATGGTGGCCGGTG 61.373 66.667 20.60 7.99 42.67 4.94
2526 2624 4.676951 AACCATGGTGGCCGGTGG 62.677 66.667 20.60 12.39 42.67 4.61
2528 2626 4.802051 CCATGGTGGCCGGTGGAG 62.802 72.222 2.57 0.00 34.98 3.86
2529 2627 3.716195 CATGGTGGCCGGTGGAGA 61.716 66.667 1.90 0.00 0.00 3.71
2530 2628 3.402681 ATGGTGGCCGGTGGAGAG 61.403 66.667 1.90 0.00 0.00 3.20
2533 2631 4.767255 GTGGCCGGTGGAGAGCTG 62.767 72.222 1.90 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 88 7.463961 TTTAAAACTTACACCCACAAGTTCA 57.536 32.000 0.61 0.00 42.62 3.18
470 472 6.165700 TCAGATGCTTGAGACTGCAATATA 57.834 37.500 0.00 0.00 42.74 0.86
641 643 3.686016 ACCTCACGCACCAAATTATCTT 58.314 40.909 0.00 0.00 0.00 2.40
1274 1334 2.224426 ACTGGAACGTGGAATTACTGCA 60.224 45.455 0.00 0.00 0.00 4.41
1595 1670 4.391216 CGTGATTCTTTTCTCACATGCTCT 59.609 41.667 0.00 0.00 41.46 4.09
1653 1728 5.382618 ACTAGTACCACTTTGTAGGTTCG 57.617 43.478 0.00 0.00 39.31 3.95
1697 1782 3.070018 CCATCGAGGAATAATCTGTGCC 58.930 50.000 0.00 0.00 41.22 5.01
1759 1844 3.117663 TGGACCCTTAACCAATATGAGCC 60.118 47.826 0.00 0.00 32.93 4.70
1773 1858 4.217550 CGTGAAACAAATATGTGGACCCTT 59.782 41.667 0.00 0.00 40.46 3.95
1787 1872 3.318017 CCCACAAAACAACGTGAAACAA 58.682 40.909 0.00 0.00 35.74 2.83
1832 1917 8.125081 TCAGGATAATAGGATATCACCACATCT 58.875 37.037 4.83 0.00 34.58 2.90
1854 1947 3.636300 TGTCAGGTTCCAAATTGTTCAGG 59.364 43.478 0.00 0.00 0.00 3.86
1889 1982 2.149578 GTAGGCATCACATCCATCTGC 58.850 52.381 0.00 0.00 0.00 4.26
1937 2030 1.859080 CGGTAATTAGTCTGAAGCGCC 59.141 52.381 2.29 0.00 0.00 6.53
1979 2072 1.134670 GCGGCTCCTCATGTAAGTTCT 60.135 52.381 0.00 0.00 0.00 3.01
1993 2086 0.179018 ACCTTCCCATTATGCGGCTC 60.179 55.000 0.00 0.00 0.00 4.70
2107 2205 6.569780 GCTGGGGTTTTATTCGTGAAAATAT 58.430 36.000 0.00 0.00 0.00 1.28
2125 2223 1.227823 TGACTTGTCAACGCTGGGG 60.228 57.895 0.44 0.00 0.00 4.96
2137 2235 5.869753 AAGATCCAATTTCTCGTGACTTG 57.130 39.130 0.00 0.00 0.00 3.16
2145 2243 4.221482 AGTGGGCAAAAGATCCAATTTCTC 59.779 41.667 0.00 0.00 31.73 2.87
2146 2244 4.162651 AGTGGGCAAAAGATCCAATTTCT 58.837 39.130 0.00 0.00 31.73 2.52
2147 2245 4.541973 AGTGGGCAAAAGATCCAATTTC 57.458 40.909 0.00 0.00 31.73 2.17
2148 2246 4.980339 AAGTGGGCAAAAGATCCAATTT 57.020 36.364 0.00 0.00 35.67 1.82
2149 2247 4.980339 AAAGTGGGCAAAAGATCCAATT 57.020 36.364 0.00 0.00 40.04 2.32
2150 2248 4.594491 AGAAAAGTGGGCAAAAGATCCAAT 59.406 37.500 0.00 0.00 31.73 3.16
2151 2249 3.966665 AGAAAAGTGGGCAAAAGATCCAA 59.033 39.130 0.00 0.00 31.73 3.53
2152 2250 3.575805 AGAAAAGTGGGCAAAAGATCCA 58.424 40.909 0.00 0.00 0.00 3.41
2153 2251 4.281941 AGAAGAAAAGTGGGCAAAAGATCC 59.718 41.667 0.00 0.00 0.00 3.36
2154 2252 5.459536 AGAAGAAAAGTGGGCAAAAGATC 57.540 39.130 0.00 0.00 0.00 2.75
2155 2253 5.876651 AAGAAGAAAAGTGGGCAAAAGAT 57.123 34.783 0.00 0.00 0.00 2.40
2156 2254 5.891551 AGTAAGAAGAAAAGTGGGCAAAAGA 59.108 36.000 0.00 0.00 0.00 2.52
2157 2255 6.149129 AGTAAGAAGAAAAGTGGGCAAAAG 57.851 37.500 0.00 0.00 0.00 2.27
2158 2256 6.538945 AAGTAAGAAGAAAAGTGGGCAAAA 57.461 33.333 0.00 0.00 0.00 2.44
2159 2257 6.337356 CAAAGTAAGAAGAAAAGTGGGCAAA 58.663 36.000 0.00 0.00 0.00 3.68
2160 2258 5.163457 CCAAAGTAAGAAGAAAAGTGGGCAA 60.163 40.000 0.00 0.00 0.00 4.52
2161 2259 4.340950 CCAAAGTAAGAAGAAAAGTGGGCA 59.659 41.667 0.00 0.00 0.00 5.36
2162 2260 4.341235 ACCAAAGTAAGAAGAAAAGTGGGC 59.659 41.667 0.00 0.00 0.00 5.36
2163 2261 5.592688 TCACCAAAGTAAGAAGAAAAGTGGG 59.407 40.000 0.00 0.00 0.00 4.61
2164 2262 6.693315 TCACCAAAGTAAGAAGAAAAGTGG 57.307 37.500 0.00 0.00 0.00 4.00
2165 2263 7.141363 CCATCACCAAAGTAAGAAGAAAAGTG 58.859 38.462 0.00 0.00 0.00 3.16
2166 2264 6.833933 ACCATCACCAAAGTAAGAAGAAAAGT 59.166 34.615 0.00 0.00 0.00 2.66
2167 2265 7.141363 CACCATCACCAAAGTAAGAAGAAAAG 58.859 38.462 0.00 0.00 0.00 2.27
2168 2266 6.040391 CCACCATCACCAAAGTAAGAAGAAAA 59.960 38.462 0.00 0.00 0.00 2.29
2169 2267 5.534654 CCACCATCACCAAAGTAAGAAGAAA 59.465 40.000 0.00 0.00 0.00 2.52
2170 2268 5.070001 CCACCATCACCAAAGTAAGAAGAA 58.930 41.667 0.00 0.00 0.00 2.52
2171 2269 4.506625 CCCACCATCACCAAAGTAAGAAGA 60.507 45.833 0.00 0.00 0.00 2.87
2172 2270 3.758554 CCCACCATCACCAAAGTAAGAAG 59.241 47.826 0.00 0.00 0.00 2.85
2173 2271 3.499563 CCCCACCATCACCAAAGTAAGAA 60.500 47.826 0.00 0.00 0.00 2.52
2174 2272 2.041081 CCCCACCATCACCAAAGTAAGA 59.959 50.000 0.00 0.00 0.00 2.10
2175 2273 2.446435 CCCCACCATCACCAAAGTAAG 58.554 52.381 0.00 0.00 0.00 2.34
2176 2274 1.549037 GCCCCACCATCACCAAAGTAA 60.549 52.381 0.00 0.00 0.00 2.24
2177 2275 0.039035 GCCCCACCATCACCAAAGTA 59.961 55.000 0.00 0.00 0.00 2.24
2178 2276 1.228862 GCCCCACCATCACCAAAGT 60.229 57.895 0.00 0.00 0.00 2.66
2179 2277 1.077265 AGCCCCACCATCACCAAAG 59.923 57.895 0.00 0.00 0.00 2.77
2180 2278 1.228831 CAGCCCCACCATCACCAAA 60.229 57.895 0.00 0.00 0.00 3.28
2181 2279 2.440147 CAGCCCCACCATCACCAA 59.560 61.111 0.00 0.00 0.00 3.67
2182 2280 3.660571 CCAGCCCCACCATCACCA 61.661 66.667 0.00 0.00 0.00 4.17
2183 2281 4.447342 CCCAGCCCCACCATCACC 62.447 72.222 0.00 0.00 0.00 4.02
2184 2282 4.447342 CCCCAGCCCCACCATCAC 62.447 72.222 0.00 0.00 0.00 3.06
2187 2285 4.777546 TAGCCCCAGCCCCACCAT 62.778 66.667 0.00 0.00 41.25 3.55
2190 2288 3.339093 AAGTAGCCCCAGCCCCAC 61.339 66.667 0.00 0.00 41.25 4.61
2191 2289 3.338250 CAAGTAGCCCCAGCCCCA 61.338 66.667 0.00 0.00 41.25 4.96
2192 2290 3.339093 ACAAGTAGCCCCAGCCCC 61.339 66.667 0.00 0.00 41.25 5.80
2193 2291 2.137177 TTGACAAGTAGCCCCAGCCC 62.137 60.000 0.00 0.00 41.25 5.19
2194 2292 0.034089 ATTGACAAGTAGCCCCAGCC 60.034 55.000 0.00 0.00 41.25 4.85
2195 2293 1.098050 CATTGACAAGTAGCCCCAGC 58.902 55.000 0.00 0.00 40.32 4.85
2196 2294 2.237143 TCTCATTGACAAGTAGCCCCAG 59.763 50.000 0.00 0.00 0.00 4.45
2197 2295 2.027192 GTCTCATTGACAAGTAGCCCCA 60.027 50.000 0.00 0.00 44.73 4.96
2198 2296 2.633488 GTCTCATTGACAAGTAGCCCC 58.367 52.381 0.00 0.00 44.73 5.80
2208 2306 2.557924 TGCCCATGTTTGTCTCATTGAC 59.442 45.455 0.00 0.00 45.54 3.18
2209 2307 2.874014 TGCCCATGTTTGTCTCATTGA 58.126 42.857 0.00 0.00 0.00 2.57
2210 2308 3.663995 TTGCCCATGTTTGTCTCATTG 57.336 42.857 0.00 0.00 0.00 2.82
2211 2309 4.283978 TGATTTGCCCATGTTTGTCTCATT 59.716 37.500 0.00 0.00 0.00 2.57
2212 2310 3.833650 TGATTTGCCCATGTTTGTCTCAT 59.166 39.130 0.00 0.00 0.00 2.90
2213 2311 3.229293 TGATTTGCCCATGTTTGTCTCA 58.771 40.909 0.00 0.00 0.00 3.27
2214 2312 3.940209 TGATTTGCCCATGTTTGTCTC 57.060 42.857 0.00 0.00 0.00 3.36
2215 2313 3.833650 TGATGATTTGCCCATGTTTGTCT 59.166 39.130 0.00 0.00 0.00 3.41
2216 2314 4.191033 TGATGATTTGCCCATGTTTGTC 57.809 40.909 0.00 0.00 0.00 3.18
2217 2315 4.620589 TTGATGATTTGCCCATGTTTGT 57.379 36.364 0.00 0.00 0.00 2.83
2218 2316 4.154556 GGTTTGATGATTTGCCCATGTTTG 59.845 41.667 0.00 0.00 0.00 2.93
2219 2317 4.325972 GGTTTGATGATTTGCCCATGTTT 58.674 39.130 0.00 0.00 0.00 2.83
2220 2318 3.307621 GGGTTTGATGATTTGCCCATGTT 60.308 43.478 0.00 0.00 36.25 2.71
2221 2319 2.236893 GGGTTTGATGATTTGCCCATGT 59.763 45.455 0.00 0.00 36.25 3.21
2222 2320 2.420408 GGGGTTTGATGATTTGCCCATG 60.420 50.000 0.00 0.00 37.88 3.66
2223 2321 1.839354 GGGGTTTGATGATTTGCCCAT 59.161 47.619 0.00 0.00 37.88 4.00
2224 2322 1.274712 GGGGTTTGATGATTTGCCCA 58.725 50.000 0.00 0.00 37.88 5.36
2225 2323 1.274712 TGGGGTTTGATGATTTGCCC 58.725 50.000 0.00 0.00 35.52 5.36
2226 2324 2.236893 ACATGGGGTTTGATGATTTGCC 59.763 45.455 0.00 0.00 0.00 4.52
2227 2325 3.615224 ACATGGGGTTTGATGATTTGC 57.385 42.857 0.00 0.00 0.00 3.68
2228 2326 6.591062 CACTTTACATGGGGTTTGATGATTTG 59.409 38.462 0.00 0.00 0.00 2.32
2229 2327 6.496565 TCACTTTACATGGGGTTTGATGATTT 59.503 34.615 0.00 0.00 0.00 2.17
2230 2328 6.015918 TCACTTTACATGGGGTTTGATGATT 58.984 36.000 0.00 0.00 0.00 2.57
2231 2329 5.579047 TCACTTTACATGGGGTTTGATGAT 58.421 37.500 0.00 0.00 0.00 2.45
2232 2330 4.991776 TCACTTTACATGGGGTTTGATGA 58.008 39.130 0.00 0.00 0.00 2.92
2233 2331 4.158394 CCTCACTTTACATGGGGTTTGATG 59.842 45.833 0.00 0.00 32.48 3.07
2234 2332 4.344104 CCTCACTTTACATGGGGTTTGAT 58.656 43.478 0.00 0.00 32.48 2.57
2235 2333 3.761897 CCTCACTTTACATGGGGTTTGA 58.238 45.455 0.00 0.00 32.48 2.69
2236 2334 2.231235 GCCTCACTTTACATGGGGTTTG 59.769 50.000 0.00 0.00 40.19 2.93
2237 2335 2.158385 TGCCTCACTTTACATGGGGTTT 60.158 45.455 0.00 0.00 40.19 3.27
2238 2336 1.427368 TGCCTCACTTTACATGGGGTT 59.573 47.619 0.00 0.00 40.19 4.11
2239 2337 1.072266 TGCCTCACTTTACATGGGGT 58.928 50.000 0.00 0.00 40.19 4.95
2240 2338 2.214376 TTGCCTCACTTTACATGGGG 57.786 50.000 0.00 0.00 41.10 4.96
2241 2339 3.826157 TCTTTTGCCTCACTTTACATGGG 59.174 43.478 0.00 0.00 0.00 4.00
2242 2340 5.649782 ATCTTTTGCCTCACTTTACATGG 57.350 39.130 0.00 0.00 0.00 3.66
2243 2341 6.680810 TGAATCTTTTGCCTCACTTTACATG 58.319 36.000 0.00 0.00 0.00 3.21
2244 2342 6.899393 TGAATCTTTTGCCTCACTTTACAT 57.101 33.333 0.00 0.00 0.00 2.29
2245 2343 6.707440 TTGAATCTTTTGCCTCACTTTACA 57.293 33.333 0.00 0.00 0.00 2.41
2246 2344 7.597386 AGATTGAATCTTTTGCCTCACTTTAC 58.403 34.615 0.97 0.00 35.76 2.01
2247 2345 7.448161 TGAGATTGAATCTTTTGCCTCACTTTA 59.552 33.333 9.35 0.00 40.38 1.85
2248 2346 6.266103 TGAGATTGAATCTTTTGCCTCACTTT 59.734 34.615 9.35 0.00 40.38 2.66
2249 2347 5.771666 TGAGATTGAATCTTTTGCCTCACTT 59.228 36.000 9.35 0.00 40.38 3.16
2250 2348 5.319453 TGAGATTGAATCTTTTGCCTCACT 58.681 37.500 9.35 0.00 40.38 3.41
2251 2349 5.633830 TGAGATTGAATCTTTTGCCTCAC 57.366 39.130 9.35 0.00 40.38 3.51
2252 2350 7.415989 GCTTATGAGATTGAATCTTTTGCCTCA 60.416 37.037 9.35 1.53 40.38 3.86
2253 2351 6.916932 GCTTATGAGATTGAATCTTTTGCCTC 59.083 38.462 9.35 0.00 40.38 4.70
2254 2352 6.459298 CGCTTATGAGATTGAATCTTTTGCCT 60.459 38.462 9.35 0.00 40.38 4.75
2255 2353 5.684626 CGCTTATGAGATTGAATCTTTTGCC 59.315 40.000 9.35 0.00 40.38 4.52
2256 2354 6.489675 TCGCTTATGAGATTGAATCTTTTGC 58.510 36.000 9.35 8.77 40.38 3.68
2257 2355 8.900511 TTTCGCTTATGAGATTGAATCTTTTG 57.099 30.769 9.35 0.65 40.38 2.44
2259 2357 9.512435 CAATTTCGCTTATGAGATTGAATCTTT 57.488 29.630 9.35 3.27 40.85 2.52
2260 2358 7.646922 GCAATTTCGCTTATGAGATTGAATCTT 59.353 33.333 9.35 0.00 40.85 2.40
2261 2359 7.137426 GCAATTTCGCTTATGAGATTGAATCT 58.863 34.615 7.53 7.53 40.85 2.40
2262 2360 6.914215 TGCAATTTCGCTTATGAGATTGAATC 59.086 34.615 10.17 0.00 40.85 2.52
2263 2361 6.798482 TGCAATTTCGCTTATGAGATTGAAT 58.202 32.000 10.17 0.00 40.85 2.57
2264 2362 6.193514 TGCAATTTCGCTTATGAGATTGAA 57.806 33.333 10.17 0.00 40.85 2.69
2265 2363 5.816449 TGCAATTTCGCTTATGAGATTGA 57.184 34.783 10.17 0.00 40.85 2.57
2266 2364 6.800408 CCTATGCAATTTCGCTTATGAGATTG 59.200 38.462 0.00 3.44 41.14 2.67
2267 2365 6.712095 TCCTATGCAATTTCGCTTATGAGATT 59.288 34.615 0.00 0.00 0.00 2.40
2268 2366 6.233434 TCCTATGCAATTTCGCTTATGAGAT 58.767 36.000 0.00 0.00 0.00 2.75
2269 2367 5.610398 TCCTATGCAATTTCGCTTATGAGA 58.390 37.500 0.00 0.00 0.00 3.27
2270 2368 5.616424 GCTCCTATGCAATTTCGCTTATGAG 60.616 44.000 0.00 9.53 37.35 2.90
2271 2369 4.214119 GCTCCTATGCAATTTCGCTTATGA 59.786 41.667 0.00 0.00 0.00 2.15
2272 2370 4.023792 TGCTCCTATGCAATTTCGCTTATG 60.024 41.667 0.00 0.00 40.29 1.90
2273 2371 4.023707 GTGCTCCTATGCAATTTCGCTTAT 60.024 41.667 0.00 0.00 45.12 1.73
2274 2372 3.312421 GTGCTCCTATGCAATTTCGCTTA 59.688 43.478 0.00 0.00 45.12 3.09
2275 2373 2.098117 GTGCTCCTATGCAATTTCGCTT 59.902 45.455 0.00 0.00 45.12 4.68
2276 2374 1.672881 GTGCTCCTATGCAATTTCGCT 59.327 47.619 0.00 0.00 45.12 4.93
2277 2375 1.268743 GGTGCTCCTATGCAATTTCGC 60.269 52.381 0.00 0.00 45.12 4.70
2278 2376 2.032550 CAGGTGCTCCTATGCAATTTCG 59.967 50.000 7.08 0.00 45.12 3.46
2279 2377 2.223665 GCAGGTGCTCCTATGCAATTTC 60.224 50.000 7.08 0.00 45.12 2.17
2280 2378 1.753073 GCAGGTGCTCCTATGCAATTT 59.247 47.619 7.08 0.00 45.12 1.82
2281 2379 1.341285 TGCAGGTGCTCCTATGCAATT 60.341 47.619 16.70 0.00 45.12 2.32
2282 2380 0.256752 TGCAGGTGCTCCTATGCAAT 59.743 50.000 16.70 0.00 45.12 3.56
2283 2381 0.393402 CTGCAGGTGCTCCTATGCAA 60.393 55.000 18.76 6.95 45.12 4.08
2284 2382 1.222661 CTGCAGGTGCTCCTATGCA 59.777 57.895 17.64 17.64 43.07 3.96
2285 2383 1.525535 CCTGCAGGTGCTCCTATGC 60.526 63.158 25.53 9.46 43.07 3.14
2286 2384 1.525535 GCCTGCAGGTGCTCCTATG 60.526 63.158 32.81 4.74 43.07 2.23
2287 2385 1.997311 TGCCTGCAGGTGCTCCTAT 60.997 57.895 32.81 0.00 43.07 2.57
2288 2386 2.607442 TGCCTGCAGGTGCTCCTA 60.607 61.111 32.81 9.02 43.07 2.94
2289 2387 4.341783 GTGCCTGCAGGTGCTCCT 62.342 66.667 32.81 0.18 46.37 3.69
2290 2388 4.648626 TGTGCCTGCAGGTGCTCC 62.649 66.667 32.81 16.87 42.66 4.70
2291 2389 3.360340 GTGTGCCTGCAGGTGCTC 61.360 66.667 32.81 21.19 42.66 4.26
2292 2390 4.962836 GGTGTGCCTGCAGGTGCT 62.963 66.667 32.81 0.00 42.66 4.40
2293 2391 4.962836 AGGTGTGCCTGCAGGTGC 62.963 66.667 32.81 24.57 45.05 5.01
2302 2400 0.912486 AGATAACAGGGAGGTGTGCC 59.088 55.000 0.00 0.00 0.00 5.01
2303 2401 1.555075 TGAGATAACAGGGAGGTGTGC 59.445 52.381 0.00 0.00 0.00 4.57
2304 2402 2.093447 GGTGAGATAACAGGGAGGTGTG 60.093 54.545 0.00 0.00 0.00 3.82
2305 2403 2.188817 GGTGAGATAACAGGGAGGTGT 58.811 52.381 0.00 0.00 0.00 4.16
2306 2404 2.187958 TGGTGAGATAACAGGGAGGTG 58.812 52.381 0.00 0.00 0.00 4.00
2307 2405 2.642171 TGGTGAGATAACAGGGAGGT 57.358 50.000 0.00 0.00 0.00 3.85
2308 2406 3.455910 TCAATGGTGAGATAACAGGGAGG 59.544 47.826 0.00 0.00 0.00 4.30
2309 2407 4.760530 TCAATGGTGAGATAACAGGGAG 57.239 45.455 0.00 0.00 0.00 4.30
2310 2408 4.288366 TGTTCAATGGTGAGATAACAGGGA 59.712 41.667 0.00 0.00 34.49 4.20
2311 2409 4.588899 TGTTCAATGGTGAGATAACAGGG 58.411 43.478 0.00 0.00 34.49 4.45
2312 2410 5.449588 GCATGTTCAATGGTGAGATAACAGG 60.450 44.000 0.00 0.00 34.49 4.00
2313 2411 5.124297 TGCATGTTCAATGGTGAGATAACAG 59.876 40.000 0.00 0.00 34.49 3.16
2314 2412 5.008980 TGCATGTTCAATGGTGAGATAACA 58.991 37.500 0.00 0.00 34.49 2.41
2315 2413 5.565592 TGCATGTTCAATGGTGAGATAAC 57.434 39.130 0.00 0.00 34.49 1.89
2316 2414 6.406065 CCAATGCATGTTCAATGGTGAGATAA 60.406 38.462 0.00 0.00 33.43 1.75
2317 2415 5.068067 CCAATGCATGTTCAATGGTGAGATA 59.932 40.000 0.00 0.00 33.43 1.98
2318 2416 4.142026 CCAATGCATGTTCAATGGTGAGAT 60.142 41.667 0.00 0.00 33.43 2.75
2319 2417 3.193903 CCAATGCATGTTCAATGGTGAGA 59.806 43.478 0.00 0.00 33.43 3.27
2320 2418 3.517602 CCAATGCATGTTCAATGGTGAG 58.482 45.455 0.00 0.00 33.43 3.51
2321 2419 2.234168 CCCAATGCATGTTCAATGGTGA 59.766 45.455 0.00 0.00 35.70 4.02
2322 2420 2.234168 TCCCAATGCATGTTCAATGGTG 59.766 45.455 0.00 0.00 35.70 4.17
2323 2421 2.538222 TCCCAATGCATGTTCAATGGT 58.462 42.857 0.00 0.00 35.70 3.55
2324 2422 3.830744 ATCCCAATGCATGTTCAATGG 57.169 42.857 0.00 2.44 36.90 3.16
2325 2423 5.849510 ACATATCCCAATGCATGTTCAATG 58.150 37.500 0.00 3.44 0.00 2.82
2326 2424 6.015180 GGTACATATCCCAATGCATGTTCAAT 60.015 38.462 0.00 0.00 33.78 2.57
2327 2425 5.301551 GGTACATATCCCAATGCATGTTCAA 59.698 40.000 0.00 0.00 33.78 2.69
2328 2426 4.826733 GGTACATATCCCAATGCATGTTCA 59.173 41.667 0.00 0.00 33.78 3.18
2329 2427 4.826733 TGGTACATATCCCAATGCATGTTC 59.173 41.667 0.00 0.00 33.78 3.18
2330 2428 4.584325 GTGGTACATATCCCAATGCATGTT 59.416 41.667 0.00 0.00 44.52 2.71
2331 2429 4.141181 AGTGGTACATATCCCAATGCATGT 60.141 41.667 0.00 0.00 44.52 3.21
2332 2430 4.401022 AGTGGTACATATCCCAATGCATG 58.599 43.478 0.00 0.00 44.52 4.06
2333 2431 4.729552 AGTGGTACATATCCCAATGCAT 57.270 40.909 0.00 0.00 44.52 3.96
2334 2432 5.841267 ATAGTGGTACATATCCCAATGCA 57.159 39.130 0.00 0.00 44.52 3.96
2335 2433 7.338710 ACATATAGTGGTACATATCCCAATGC 58.661 38.462 0.00 0.00 44.52 3.56
2338 2436 9.777008 TCATACATATAGTGGTACATATCCCAA 57.223 33.333 0.00 0.00 44.52 4.12
2339 2437 9.421399 CTCATACATATAGTGGTACATATCCCA 57.579 37.037 0.00 0.00 44.52 4.37
2340 2438 9.422681 ACTCATACATATAGTGGTACATATCCC 57.577 37.037 0.00 0.00 44.52 3.85
2407 2505 9.720769 CCCATAAAGTAGACTAAAACTGAAGAA 57.279 33.333 0.00 0.00 0.00 2.52
2408 2506 9.096823 TCCCATAAAGTAGACTAAAACTGAAGA 57.903 33.333 0.00 0.00 0.00 2.87
2409 2507 9.892130 ATCCCATAAAGTAGACTAAAACTGAAG 57.108 33.333 0.00 0.00 0.00 3.02
2410 2508 9.667107 CATCCCATAAAGTAGACTAAAACTGAA 57.333 33.333 0.00 0.00 0.00 3.02
2411 2509 8.822805 ACATCCCATAAAGTAGACTAAAACTGA 58.177 33.333 0.00 0.00 0.00 3.41
2419 2517 8.865090 CAGAGAATACATCCCATAAAGTAGACT 58.135 37.037 0.00 0.00 0.00 3.24
2420 2518 7.600752 GCAGAGAATACATCCCATAAAGTAGAC 59.399 40.741 0.00 0.00 0.00 2.59
2421 2519 7.290014 TGCAGAGAATACATCCCATAAAGTAGA 59.710 37.037 0.00 0.00 0.00 2.59
2422 2520 7.386299 GTGCAGAGAATACATCCCATAAAGTAG 59.614 40.741 0.00 0.00 0.00 2.57
2423 2521 7.147567 TGTGCAGAGAATACATCCCATAAAGTA 60.148 37.037 0.00 0.00 0.00 2.24
2424 2522 6.058183 GTGCAGAGAATACATCCCATAAAGT 58.942 40.000 0.00 0.00 0.00 2.66
2425 2523 6.057533 TGTGCAGAGAATACATCCCATAAAG 58.942 40.000 0.00 0.00 0.00 1.85
2426 2524 6.000246 TGTGCAGAGAATACATCCCATAAA 58.000 37.500 0.00 0.00 0.00 1.40
2427 2525 5.628797 TGTGCAGAGAATACATCCCATAA 57.371 39.130 0.00 0.00 0.00 1.90
2428 2526 5.628797 TTGTGCAGAGAATACATCCCATA 57.371 39.130 0.00 0.00 0.00 2.74
2429 2527 4.508551 TTGTGCAGAGAATACATCCCAT 57.491 40.909 0.00 0.00 0.00 4.00
2430 2528 3.998913 TTGTGCAGAGAATACATCCCA 57.001 42.857 0.00 0.00 0.00 4.37
2431 2529 4.514441 CAGATTGTGCAGAGAATACATCCC 59.486 45.833 0.00 0.00 0.00 3.85
2432 2530 5.121811 ACAGATTGTGCAGAGAATACATCC 58.878 41.667 0.00 0.00 0.00 3.51
2433 2531 5.236047 GGACAGATTGTGCAGAGAATACATC 59.764 44.000 0.00 0.00 38.66 3.06
2434 2532 5.121811 GGACAGATTGTGCAGAGAATACAT 58.878 41.667 0.00 0.00 38.66 2.29
2435 2533 4.507710 GGACAGATTGTGCAGAGAATACA 58.492 43.478 0.00 0.00 38.66 2.29
2436 2534 3.873952 GGGACAGATTGTGCAGAGAATAC 59.126 47.826 3.21 0.00 40.73 1.89
2437 2535 3.776969 AGGGACAGATTGTGCAGAGAATA 59.223 43.478 3.21 0.00 40.73 1.75
2438 2536 2.575279 AGGGACAGATTGTGCAGAGAAT 59.425 45.455 3.21 0.00 40.73 2.40
2439 2537 1.980765 AGGGACAGATTGTGCAGAGAA 59.019 47.619 3.21 0.00 40.73 2.87
2440 2538 1.277273 CAGGGACAGATTGTGCAGAGA 59.723 52.381 3.21 0.00 40.73 3.10
2441 2539 1.002888 ACAGGGACAGATTGTGCAGAG 59.997 52.381 3.21 0.00 40.73 3.35
2442 2540 1.002430 GACAGGGACAGATTGTGCAGA 59.998 52.381 3.21 0.00 40.73 4.26
2443 2541 1.446907 GACAGGGACAGATTGTGCAG 58.553 55.000 3.21 0.00 40.73 4.41
2444 2542 0.036732 GGACAGGGACAGATTGTGCA 59.963 55.000 3.21 0.00 40.73 4.57
2445 2543 0.326264 AGGACAGGGACAGATTGTGC 59.674 55.000 0.00 0.00 38.03 4.57
2446 2544 1.339438 CCAGGACAGGGACAGATTGTG 60.339 57.143 0.00 0.00 0.00 3.33
2447 2545 0.987294 CCAGGACAGGGACAGATTGT 59.013 55.000 0.00 0.00 0.00 2.71
2448 2546 0.393537 GCCAGGACAGGGACAGATTG 60.394 60.000 0.00 0.00 0.00 2.67
2449 2547 1.566298 GGCCAGGACAGGGACAGATT 61.566 60.000 0.00 0.00 31.94 2.40
2450 2548 1.997874 GGCCAGGACAGGGACAGAT 60.998 63.158 0.00 0.00 31.94 2.90
2451 2549 2.607750 GGCCAGGACAGGGACAGA 60.608 66.667 0.00 0.00 31.94 3.41
2452 2550 3.721706 GGGCCAGGACAGGGACAG 61.722 72.222 4.39 0.00 33.97 3.51
2453 2551 4.590553 TGGGCCAGGACAGGGACA 62.591 66.667 0.00 0.00 33.97 4.02
2454 2552 4.035102 GTGGGCCAGGACAGGGAC 62.035 72.222 6.40 0.00 0.00 4.46
2455 2553 3.810687 AAGTGGGCCAGGACAGGGA 62.811 63.158 6.40 0.00 0.00 4.20
2456 2554 3.260100 AAGTGGGCCAGGACAGGG 61.260 66.667 6.40 0.00 0.00 4.45
2457 2555 2.034687 CAAGTGGGCCAGGACAGG 59.965 66.667 6.40 0.00 0.00 4.00
2458 2556 2.674380 GCAAGTGGGCCAGGACAG 60.674 66.667 6.40 0.00 0.00 3.51
2459 2557 3.496309 CTGCAAGTGGGCCAGGACA 62.496 63.158 6.40 1.91 0.00 4.02
2460 2558 2.674380 CTGCAAGTGGGCCAGGAC 60.674 66.667 6.40 0.00 0.00 3.85
2461 2559 4.666253 GCTGCAAGTGGGCCAGGA 62.666 66.667 6.40 0.00 35.30 3.86
2462 2560 4.980702 TGCTGCAAGTGGGCCAGG 62.981 66.667 6.40 0.00 35.30 4.45
2463 2561 2.678934 ATGCTGCAAGTGGGCCAG 60.679 61.111 6.40 0.00 35.30 4.85
2464 2562 2.992689 CATGCTGCAAGTGGGCCA 60.993 61.111 6.36 0.00 35.30 5.36
2465 2563 4.446413 GCATGCTGCAAGTGGGCC 62.446 66.667 11.37 0.00 44.26 5.80
2486 2584 0.690762 GGTAGTTGGGAGCTGGAACA 59.309 55.000 0.00 0.00 0.00 3.18
2487 2585 0.690762 TGGTAGTTGGGAGCTGGAAC 59.309 55.000 0.00 0.00 0.00 3.62
2488 2586 1.073284 GTTGGTAGTTGGGAGCTGGAA 59.927 52.381 0.00 0.00 0.00 3.53
2489 2587 0.690762 GTTGGTAGTTGGGAGCTGGA 59.309 55.000 0.00 0.00 0.00 3.86
2490 2588 0.400213 TGTTGGTAGTTGGGAGCTGG 59.600 55.000 0.00 0.00 0.00 4.85
2491 2589 1.880027 GTTGTTGGTAGTTGGGAGCTG 59.120 52.381 0.00 0.00 0.00 4.24
2492 2590 1.202891 GGTTGTTGGTAGTTGGGAGCT 60.203 52.381 0.00 0.00 0.00 4.09
2493 2591 1.244816 GGTTGTTGGTAGTTGGGAGC 58.755 55.000 0.00 0.00 0.00 4.70
2494 2592 2.649531 TGGTTGTTGGTAGTTGGGAG 57.350 50.000 0.00 0.00 0.00 4.30
2495 2593 2.489985 CCATGGTTGTTGGTAGTTGGGA 60.490 50.000 2.57 0.00 0.00 4.37
2496 2594 1.892474 CCATGGTTGTTGGTAGTTGGG 59.108 52.381 2.57 0.00 0.00 4.12
2497 2595 2.295909 CACCATGGTTGTTGGTAGTTGG 59.704 50.000 16.84 0.00 45.71 3.77
2498 2596 2.295909 CCACCATGGTTGTTGGTAGTTG 59.704 50.000 16.84 0.00 45.71 3.16
2499 2597 2.593026 CCACCATGGTTGTTGGTAGTT 58.407 47.619 16.84 0.00 45.71 2.24
2500 2598 1.821666 GCCACCATGGTTGTTGGTAGT 60.822 52.381 16.84 0.00 45.71 2.73
2501 2599 0.887933 GCCACCATGGTTGTTGGTAG 59.112 55.000 16.84 0.45 45.71 3.18
2502 2600 0.540830 GGCCACCATGGTTGTTGGTA 60.541 55.000 16.84 0.00 45.71 3.25
2504 2602 2.929903 CGGCCACCATGGTTGTTGG 61.930 63.158 16.84 14.91 40.46 3.77
2505 2603 2.650196 CGGCCACCATGGTTGTTG 59.350 61.111 16.84 3.51 40.46 3.33
2506 2604 2.600173 CCGGCCACCATGGTTGTT 60.600 61.111 16.84 0.00 40.46 2.83
2507 2605 3.897122 ACCGGCCACCATGGTTGT 61.897 61.111 16.84 4.79 40.46 3.32
2508 2606 3.372730 CACCGGCCACCATGGTTG 61.373 66.667 16.84 13.94 40.46 3.77
2509 2607 4.676951 CCACCGGCCACCATGGTT 62.677 66.667 16.84 0.00 40.46 3.67
2511 2609 4.802051 CTCCACCGGCCACCATGG 62.802 72.222 11.19 11.19 41.55 3.66
2512 2610 3.687321 CTCTCCACCGGCCACCATG 62.687 68.421 0.00 0.00 0.00 3.66
2513 2611 3.402681 CTCTCCACCGGCCACCAT 61.403 66.667 0.00 0.00 0.00 3.55
2516 2614 4.767255 CAGCTCTCCACCGGCCAC 62.767 72.222 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.