Multiple sequence alignment - TraesCS2B01G268300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G268300 chr2B 100.000 4004 0 0 1 4004 362695300 362691297 0.000000e+00 7395.0
1 TraesCS2B01G268300 chr2B 90.019 531 51 2 93 621 67799784 67800314 0.000000e+00 686.0
2 TraesCS2B01G268300 chr2B 90.566 53 5 0 3842 3894 757061191 757061243 2.000000e-08 71.3
3 TraesCS2B01G268300 chr2D 97.222 2160 47 5 645 2801 309576373 309578522 0.000000e+00 3644.0
4 TraesCS2B01G268300 chr2D 94.198 293 14 2 3095 3386 309583701 309583991 1.020000e-120 444.0
5 TraesCS2B01G268300 chr2D 88.115 244 21 3 3768 4004 309584097 309584339 2.360000e-72 283.0
6 TraesCS2B01G268300 chr2D 87.379 206 17 4 2795 3000 309582017 309582213 1.120000e-55 228.0
7 TraesCS2B01G268300 chr2D 94.949 99 5 0 3330 3428 309583993 309584091 5.360000e-34 156.0
8 TraesCS2B01G268300 chr2D 86.466 133 9 4 2983 3107 309582230 309582361 1.940000e-28 137.0
9 TraesCS2B01G268300 chr2D 90.722 97 7 2 3493 3588 95656764 95656859 1.170000e-25 128.0
10 TraesCS2B01G268300 chr2A 96.380 1989 47 12 645 2618 429719347 429717369 0.000000e+00 3251.0
11 TraesCS2B01G268300 chr2A 92.366 786 30 13 2646 3406 429717077 429716297 0.000000e+00 1092.0
12 TraesCS2B01G268300 chr2A 92.806 139 10 0 3590 3728 451807050 451806912 6.790000e-48 202.0
13 TraesCS2B01G268300 chr6B 90.960 531 45 3 93 621 437434376 437434905 0.000000e+00 712.0
14 TraesCS2B01G268300 chr6B 89.266 531 55 2 93 621 346818337 346818867 0.000000e+00 664.0
15 TraesCS2B01G268300 chr6B 77.883 529 85 19 2071 2593 615609089 615608587 2.340000e-77 300.0
16 TraesCS2B01G268300 chr6B 77.395 522 69 24 2071 2583 507371888 507372369 8.530000e-67 265.0
17 TraesCS2B01G268300 chr1B 90.960 531 45 3 93 621 355724377 355723848 0.000000e+00 712.0
18 TraesCS2B01G268300 chr1B 92.222 90 6 1 1 90 137155276 137155188 4.200000e-25 126.0
19 TraesCS2B01G268300 chrUn 91.048 525 45 2 99 621 18476585 18476061 0.000000e+00 708.0
20 TraesCS2B01G268300 chrUn 97.619 84 1 1 1 84 339083446 339083364 4.170000e-30 143.0
21 TraesCS2B01G268300 chr7B 90.207 531 50 2 93 621 701671157 701670627 0.000000e+00 691.0
22 TraesCS2B01G268300 chr7B 89.474 95 5 5 1 94 44264994 44265084 9.090000e-22 115.0
23 TraesCS2B01G268300 chr3D 91.107 506 45 0 93 598 31685793 31685288 0.000000e+00 686.0
24 TraesCS2B01G268300 chr3D 92.086 139 11 0 3590 3728 40305791 40305929 3.160000e-46 196.0
25 TraesCS2B01G268300 chr4B 89.642 531 52 3 93 621 302296035 302295506 0.000000e+00 673.0
26 TraesCS2B01G268300 chr5B 89.788 519 52 1 92 610 553737648 553738165 0.000000e+00 664.0
27 TraesCS2B01G268300 chr5B 78.176 669 111 23 1951 2611 586865554 586864913 1.040000e-105 394.0
28 TraesCS2B01G268300 chr5B 77.896 656 118 17 1143 1783 586866226 586865583 2.260000e-102 383.0
29 TraesCS2B01G268300 chr5B 77.298 533 86 20 2071 2593 625120718 625120211 8.470000e-72 281.0
30 TraesCS2B01G268300 chr5B 77.298 533 86 20 2071 2593 628700267 628699760 8.470000e-72 281.0
31 TraesCS2B01G268300 chr5B 89.333 75 6 2 15 89 549638673 549638601 4.260000e-15 93.5
32 TraesCS2B01G268300 chr5A 78.793 646 105 19 1954 2593 597840996 597840377 4.820000e-109 405.0
33 TraesCS2B01G268300 chr5A 76.818 660 130 18 1143 1783 597841682 597841027 2.290000e-92 350.0
34 TraesCS2B01G268300 chr5A 94.245 139 8 0 3587 3725 593057136 593057274 3.130000e-51 213.0
35 TraesCS2B01G268300 chr5A 91.667 96 7 1 3497 3591 666596045 666595950 9.030000e-27 132.0
36 TraesCS2B01G268300 chr5D 77.439 656 124 15 1143 1783 479127018 479126372 1.760000e-98 370.0
37 TraesCS2B01G268300 chr5D 92.647 136 10 0 3590 3725 351152961 351153096 3.160000e-46 196.0
38 TraesCS2B01G268300 chr5D 94.366 71 4 0 14 84 551450863 551450793 4.230000e-20 110.0
39 TraesCS2B01G268300 chr5D 92.647 68 5 0 17 84 421366166 421366233 9.160000e-17 99.0
40 TraesCS2B01G268300 chr7A 77.820 523 83 19 2071 2583 487477319 487477818 3.910000e-75 292.0
41 TraesCS2B01G268300 chr7A 93.382 136 9 0 3590 3725 449641972 449642107 6.790000e-48 202.0
42 TraesCS2B01G268300 chr7A 91.724 145 11 1 3584 3728 568699602 568699459 2.440000e-47 200.0
43 TraesCS2B01G268300 chr1A 94.245 139 8 0 3590 3728 536896387 536896249 3.130000e-51 213.0
44 TraesCS2B01G268300 chr1A 91.398 93 7 1 3497 3588 398054963 398055055 4.200000e-25 126.0
45 TraesCS2B01G268300 chr6D 92.806 139 10 0 3590 3728 179949630 179949492 6.790000e-48 202.0
46 TraesCS2B01G268300 chr6D 92.391 92 6 1 3498 3588 9795017 9795108 3.250000e-26 130.0
47 TraesCS2B01G268300 chr6D 90.217 92 8 1 3498 3588 9589429 9589520 7.030000e-23 119.0
48 TraesCS2B01G268300 chr6D 89.744 78 8 0 17 94 164971481 164971404 2.550000e-17 100.0
49 TraesCS2B01G268300 chr1D 93.382 136 9 0 3590 3725 63504671 63504806 6.790000e-48 202.0
50 TraesCS2B01G268300 chr7D 93.478 92 5 1 3498 3588 400188280 400188371 6.980000e-28 135.0
51 TraesCS2B01G268300 chr7D 90.411 73 5 2 13 84 145411868 145411797 1.180000e-15 95.3
52 TraesCS2B01G268300 chr7D 100.000 28 0 0 1205 1232 544676250 544676277 7.000000e-03 52.8
53 TraesCS2B01G268300 chr6A 90.816 98 8 1 3495 3591 265995651 265995554 3.250000e-26 130.0
54 TraesCS2B01G268300 chr6A 91.398 93 7 1 3497 3588 155251962 155252054 4.200000e-25 126.0
55 TraesCS2B01G268300 chr6A 89.583 96 9 1 3497 3591 570495180 570495085 1.950000e-23 121.0
56 TraesCS2B01G268300 chr3A 88.750 80 5 4 20 98 338690649 338690573 1.180000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G268300 chr2B 362691297 362695300 4003 True 7395.000000 7395 100.000000 1 4004 1 chr2B.!!$R1 4003
1 TraesCS2B01G268300 chr2B 67799784 67800314 530 False 686.000000 686 90.019000 93 621 1 chr2B.!!$F1 528
2 TraesCS2B01G268300 chr2D 309576373 309584339 7966 False 815.333333 3644 91.388167 645 4004 6 chr2D.!!$F2 3359
3 TraesCS2B01G268300 chr2A 429716297 429719347 3050 True 2171.500000 3251 94.373000 645 3406 2 chr2A.!!$R2 2761
4 TraesCS2B01G268300 chr6B 437434376 437434905 529 False 712.000000 712 90.960000 93 621 1 chr6B.!!$F2 528
5 TraesCS2B01G268300 chr6B 346818337 346818867 530 False 664.000000 664 89.266000 93 621 1 chr6B.!!$F1 528
6 TraesCS2B01G268300 chr6B 615608587 615609089 502 True 300.000000 300 77.883000 2071 2593 1 chr6B.!!$R1 522
7 TraesCS2B01G268300 chr1B 355723848 355724377 529 True 712.000000 712 90.960000 93 621 1 chr1B.!!$R2 528
8 TraesCS2B01G268300 chrUn 18476061 18476585 524 True 708.000000 708 91.048000 99 621 1 chrUn.!!$R1 522
9 TraesCS2B01G268300 chr7B 701670627 701671157 530 True 691.000000 691 90.207000 93 621 1 chr7B.!!$R1 528
10 TraesCS2B01G268300 chr3D 31685288 31685793 505 True 686.000000 686 91.107000 93 598 1 chr3D.!!$R1 505
11 TraesCS2B01G268300 chr4B 302295506 302296035 529 True 673.000000 673 89.642000 93 621 1 chr4B.!!$R1 528
12 TraesCS2B01G268300 chr5B 553737648 553738165 517 False 664.000000 664 89.788000 92 610 1 chr5B.!!$F1 518
13 TraesCS2B01G268300 chr5B 586864913 586866226 1313 True 388.500000 394 78.036000 1143 2611 2 chr5B.!!$R4 1468
14 TraesCS2B01G268300 chr5B 625120211 625120718 507 True 281.000000 281 77.298000 2071 2593 1 chr5B.!!$R2 522
15 TraesCS2B01G268300 chr5B 628699760 628700267 507 True 281.000000 281 77.298000 2071 2593 1 chr5B.!!$R3 522
16 TraesCS2B01G268300 chr5A 597840377 597841682 1305 True 377.500000 405 77.805500 1143 2593 2 chr5A.!!$R2 1450
17 TraesCS2B01G268300 chr5D 479126372 479127018 646 True 370.000000 370 77.439000 1143 1783 1 chr5D.!!$R1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.179048 TGTTGTGACTCTGCCTGGTG 60.179 55.0 0.0 0.0 0.00 4.17 F
667 668 0.245539 TGAGGGGAAAAGTCGCTACG 59.754 55.0 0.0 0.0 36.92 3.51 F
1125 1141 0.542232 AGGTGGCCGTAGTGAGAGTT 60.542 55.0 0.0 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1125 1141 0.034767 CATCTCAAGGCCCTGCTTCA 60.035 55.000 0.00 0.00 0.00 3.02 R
2637 2684 0.586319 CACCGCTGTACAGTTTGTGG 59.414 55.000 23.44 16.33 36.29 4.17 R
3089 6955 1.692519 ACACCCACACTTCTACCACTC 59.307 52.381 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.353325 TTCGGATGGCCATTTGGG 57.647 55.556 21.84 9.67 40.85 4.12
18 19 1.386155 TTCGGATGGCCATTTGGGT 59.614 52.632 21.84 0.00 39.65 4.51
19 20 0.969917 TTCGGATGGCCATTTGGGTG 60.970 55.000 21.84 6.58 39.65 4.61
20 21 1.682005 CGGATGGCCATTTGGGTGT 60.682 57.895 21.84 0.00 39.65 4.16
21 22 1.666209 CGGATGGCCATTTGGGTGTC 61.666 60.000 21.84 4.74 39.65 3.67
22 23 0.324645 GGATGGCCATTTGGGTGTCT 60.325 55.000 21.84 0.00 39.65 3.41
23 24 1.064017 GGATGGCCATTTGGGTGTCTA 60.064 52.381 21.84 0.00 39.65 2.59
24 25 2.424812 GGATGGCCATTTGGGTGTCTAT 60.425 50.000 21.84 0.00 39.65 1.98
25 26 2.142356 TGGCCATTTGGGTGTCTATG 57.858 50.000 0.00 0.00 39.65 2.23
26 27 1.357420 TGGCCATTTGGGTGTCTATGT 59.643 47.619 0.00 0.00 39.65 2.29
27 28 2.225242 TGGCCATTTGGGTGTCTATGTT 60.225 45.455 0.00 0.00 39.65 2.71
28 29 2.166254 GGCCATTTGGGTGTCTATGTTG 59.834 50.000 0.00 0.00 39.65 3.33
29 30 2.825532 GCCATTTGGGTGTCTATGTTGT 59.174 45.455 0.00 0.00 39.65 3.32
30 31 3.367292 GCCATTTGGGTGTCTATGTTGTG 60.367 47.826 0.00 0.00 39.65 3.33
31 32 4.078537 CCATTTGGGTGTCTATGTTGTGA 58.921 43.478 0.00 0.00 0.00 3.58
32 33 4.082787 CCATTTGGGTGTCTATGTTGTGAC 60.083 45.833 0.00 0.00 0.00 3.67
33 34 4.431416 TTTGGGTGTCTATGTTGTGACT 57.569 40.909 0.00 0.00 34.57 3.41
34 35 3.678056 TGGGTGTCTATGTTGTGACTC 57.322 47.619 0.00 0.00 34.57 3.36
35 36 3.239449 TGGGTGTCTATGTTGTGACTCT 58.761 45.455 0.00 0.00 34.57 3.24
36 37 3.006859 TGGGTGTCTATGTTGTGACTCTG 59.993 47.826 0.00 0.00 34.57 3.35
37 38 2.996621 GGTGTCTATGTTGTGACTCTGC 59.003 50.000 0.00 0.00 34.57 4.26
38 39 2.996621 GTGTCTATGTTGTGACTCTGCC 59.003 50.000 0.00 0.00 34.57 4.85
39 40 2.899900 TGTCTATGTTGTGACTCTGCCT 59.100 45.455 0.00 0.00 34.57 4.75
40 41 3.257393 GTCTATGTTGTGACTCTGCCTG 58.743 50.000 0.00 0.00 0.00 4.85
41 42 2.234661 TCTATGTTGTGACTCTGCCTGG 59.765 50.000 0.00 0.00 0.00 4.45
42 43 0.767375 ATGTTGTGACTCTGCCTGGT 59.233 50.000 0.00 0.00 0.00 4.00
43 44 0.179048 TGTTGTGACTCTGCCTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
44 45 0.886490 GTTGTGACTCTGCCTGGTGG 60.886 60.000 0.00 0.00 0.00 4.61
65 66 3.678548 GGCTTTATCTATAAAGTCGGGCG 59.321 47.826 18.85 0.00 46.78 6.13
66 67 4.304939 GCTTTATCTATAAAGTCGGGCGT 58.695 43.478 18.85 0.00 46.78 5.68
67 68 5.464168 GCTTTATCTATAAAGTCGGGCGTA 58.536 41.667 18.85 0.00 46.78 4.42
68 69 6.098017 GCTTTATCTATAAAGTCGGGCGTAT 58.902 40.000 18.85 0.00 46.78 3.06
69 70 6.034683 GCTTTATCTATAAAGTCGGGCGTATG 59.965 42.308 18.85 0.00 46.78 2.39
70 71 3.293311 TCTATAAAGTCGGGCGTATGC 57.707 47.619 0.00 0.00 41.71 3.14
86 87 6.613755 GCGTATGCCTTTCCTCTAAAATAA 57.386 37.500 0.00 0.00 33.98 1.40
87 88 7.023197 GCGTATGCCTTTCCTCTAAAATAAA 57.977 36.000 0.00 0.00 33.98 1.40
88 89 7.477494 GCGTATGCCTTTCCTCTAAAATAAAA 58.523 34.615 0.00 0.00 33.98 1.52
89 90 7.971722 GCGTATGCCTTTCCTCTAAAATAAAAA 59.028 33.333 0.00 0.00 33.98 1.94
113 114 5.927281 AAGTATGCCTCGTTTCCTACTTA 57.073 39.130 0.00 0.00 30.02 2.24
137 138 1.847328 GGGGTGTCGGATTTCCAATT 58.153 50.000 0.00 0.00 35.14 2.32
153 154 1.737236 CAATTCATCCGTTTCTCCGCA 59.263 47.619 0.00 0.00 0.00 5.69
269 270 0.881118 GCTGTGAAGCCCATTTCGAA 59.119 50.000 0.00 0.00 0.00 3.71
275 276 3.938963 GTGAAGCCCATTTCGAACTATGA 59.061 43.478 10.71 0.00 0.00 2.15
278 279 5.475220 TGAAGCCCATTTCGAACTATGAAAA 59.525 36.000 10.71 0.00 38.68 2.29
334 335 3.013921 GGTCAATATTTCAAGTGGGCGA 58.986 45.455 0.00 0.00 0.00 5.54
347 348 1.116308 TGGGCGAAACCGAGATATGA 58.884 50.000 0.00 0.00 40.62 2.15
429 430 6.346096 CCCTTCGAGTGGTTTTATATTGAGA 58.654 40.000 5.93 0.00 0.00 3.27
462 463 1.476833 CCGATCCAATCCGAATGGGTT 60.477 52.381 2.53 0.00 40.01 4.11
498 499 2.029844 GCTCCGCTGAGAAAACGCT 61.030 57.895 9.60 0.00 41.42 5.07
512 513 2.776072 CGCTTTAACTGGCGTCCG 59.224 61.111 8.04 0.00 45.34 4.79
543 544 4.541705 CAGAGAGGAAGATAACAGGGAGA 58.458 47.826 0.00 0.00 0.00 3.71
548 549 4.488770 AGGAAGATAACAGGGAGATCCTC 58.511 47.826 0.00 0.00 46.12 3.71
568 569 4.191544 CTCCAACCGATGAGCAAGATAAA 58.808 43.478 0.00 0.00 0.00 1.40
616 617 8.084985 TCAATAGTTGAGGTTATGGTGATACA 57.915 34.615 0.00 0.00 34.08 2.29
617 618 8.713971 TCAATAGTTGAGGTTATGGTGATACAT 58.286 33.333 0.00 0.00 34.08 2.29
667 668 0.245539 TGAGGGGAAAAGTCGCTACG 59.754 55.000 0.00 0.00 36.92 3.51
681 682 2.701073 GCTACGGCGAGAATAGCTTA 57.299 50.000 16.62 0.00 38.62 3.09
683 684 2.981140 GCTACGGCGAGAATAGCTTAAG 59.019 50.000 16.62 0.00 38.62 1.85
686 687 4.119442 ACGGCGAGAATAGCTTAAGAAA 57.881 40.909 16.62 0.00 36.74 2.52
689 690 5.163884 ACGGCGAGAATAGCTTAAGAAAAAC 60.164 40.000 16.62 0.00 36.74 2.43
742 753 3.410628 ATGGCCGGATCCAGTGCA 61.411 61.111 13.41 3.02 39.89 4.57
745 756 2.045926 GCCGGATCCAGTGCAGTT 60.046 61.111 13.41 0.00 0.00 3.16
816 827 5.295152 AGATGTTTTCTTAAACCGACGACT 58.705 37.500 0.00 0.00 42.39 4.18
817 828 4.782252 TGTTTTCTTAAACCGACGACTG 57.218 40.909 0.00 0.00 42.39 3.51
818 829 3.556775 TGTTTTCTTAAACCGACGACTGG 59.443 43.478 0.00 0.00 42.39 4.00
819 830 3.457610 TTTCTTAAACCGACGACTGGT 57.542 42.857 0.00 0.00 42.98 4.00
820 831 2.427232 TCTTAAACCGACGACTGGTG 57.573 50.000 0.00 0.00 40.35 4.17
821 832 1.000060 TCTTAAACCGACGACTGGTGG 60.000 52.381 0.00 0.00 40.35 4.61
888 900 2.243736 GGAGGTGGATGGGTTGGAATAA 59.756 50.000 0.00 0.00 0.00 1.40
950 963 3.440415 GCTACACCCAAAGGCGGC 61.440 66.667 0.00 0.00 36.11 6.53
1056 1072 4.370364 TGCAAAGAAACAGAACCAAGAC 57.630 40.909 0.00 0.00 0.00 3.01
1092 1108 2.352814 CGGCCGAGAAGAAGAAGAAGAA 60.353 50.000 24.07 0.00 0.00 2.52
1093 1109 3.258228 GGCCGAGAAGAAGAAGAAGAAG 58.742 50.000 0.00 0.00 0.00 2.85
1094 1110 3.056465 GGCCGAGAAGAAGAAGAAGAAGA 60.056 47.826 0.00 0.00 0.00 2.87
1103 1119 6.215495 AGAAGAAGAAGAAGATACGAAGGG 57.785 41.667 0.00 0.00 0.00 3.95
1125 1141 0.542232 AGGTGGCCGTAGTGAGAGTT 60.542 55.000 0.00 0.00 0.00 3.01
1432 1460 2.490217 CTGTTCGTCGCCCGATCT 59.510 61.111 0.00 0.00 46.75 2.75
1830 1864 5.302568 TGCTGAACAATTCAACCTCAATTCT 59.697 36.000 0.00 0.00 39.58 2.40
1836 1870 6.515832 ACAATTCAACCTCAATTCTCAAACC 58.484 36.000 0.00 0.00 0.00 3.27
1902 1936 1.764723 AGATCAATGCACTCCGATCCA 59.235 47.619 11.02 0.00 35.85 3.41
2373 2420 2.355986 TGACTTCAGCGGCGGGTAT 61.356 57.895 9.78 0.00 0.00 2.73
2637 2684 4.481112 CCCAGCGGCAAATGCGAC 62.481 66.667 1.45 0.00 43.26 5.19
2693 3004 0.320771 GTCGATGCTGGTGGTTCAGT 60.321 55.000 0.00 0.00 37.12 3.41
2883 6698 2.431057 AGGAGAGAGTTCGTGTTGTGTT 59.569 45.455 0.00 0.00 0.00 3.32
2901 6718 3.002965 GTGTTTGTTCCGAACTTCCGATT 59.997 43.478 12.43 0.00 0.00 3.34
3089 6955 0.321298 AGATTTGTTGGGGTCGACGG 60.321 55.000 9.92 0.00 0.00 4.79
3105 8325 0.966920 ACGGAGTGGTAGAAGTGTGG 59.033 55.000 0.00 0.00 42.51 4.17
3109 8329 1.692519 GAGTGGTAGAAGTGTGGGTGT 59.307 52.381 0.00 0.00 0.00 4.16
3110 8330 1.416401 AGTGGTAGAAGTGTGGGTGTG 59.584 52.381 0.00 0.00 0.00 3.82
3114 8334 0.762418 TAGAAGTGTGGGTGTGGGTG 59.238 55.000 0.00 0.00 0.00 4.61
3125 8345 4.344865 GTGGGTGTGGCGGGACAT 62.345 66.667 0.00 0.00 0.00 3.06
3195 8426 1.091771 CGAGTGCACATGGGATGTCC 61.092 60.000 21.04 0.00 42.70 4.02
3337 8568 1.332195 GGTTTCAGCTGCTTTTCCCT 58.668 50.000 9.47 0.00 0.00 4.20
3366 8655 1.369839 TTGTGCTTGGTTGCGTTCGA 61.370 50.000 0.00 0.00 35.36 3.71
3407 8696 2.951315 CTGTCTGTGCTGTGCTGCG 61.951 63.158 0.00 0.00 35.36 5.18
3412 8701 1.366854 CTGTGCTGTGCTGCGATGAT 61.367 55.000 0.00 0.00 35.36 2.45
3417 8706 0.098200 CTGTGCTGCGATGATGTTGG 59.902 55.000 0.00 0.00 0.00 3.77
3428 8717 2.203480 ATGTTGGGTGCCTGCGTT 60.203 55.556 0.00 0.00 0.00 4.84
3430 8719 0.960364 ATGTTGGGTGCCTGCGTTAG 60.960 55.000 0.00 0.00 0.00 2.34
3431 8720 1.599797 GTTGGGTGCCTGCGTTAGT 60.600 57.895 0.00 0.00 0.00 2.24
3433 8722 2.813908 GGGTGCCTGCGTTAGTCG 60.814 66.667 0.00 0.00 43.12 4.18
3434 8723 2.260434 GGTGCCTGCGTTAGTCGA 59.740 61.111 0.00 0.00 42.86 4.20
3435 8724 1.373748 GGTGCCTGCGTTAGTCGAA 60.374 57.895 0.00 0.00 42.86 3.71
3436 8725 0.947180 GGTGCCTGCGTTAGTCGAAA 60.947 55.000 0.00 0.00 42.86 3.46
3437 8726 0.163146 GTGCCTGCGTTAGTCGAAAC 59.837 55.000 0.00 0.00 42.86 2.78
3438 8727 0.032952 TGCCTGCGTTAGTCGAAACT 59.967 50.000 0.00 0.00 42.86 2.66
3439 8728 0.438830 GCCTGCGTTAGTCGAAACTG 59.561 55.000 0.00 0.00 42.86 3.16
3440 8729 1.779569 CCTGCGTTAGTCGAAACTGT 58.220 50.000 0.00 0.00 42.86 3.55
3441 8730 2.132762 CCTGCGTTAGTCGAAACTGTT 58.867 47.619 0.00 0.00 42.86 3.16
3442 8731 2.542595 CCTGCGTTAGTCGAAACTGTTT 59.457 45.455 5.29 5.29 42.86 2.83
3443 8732 3.362693 CCTGCGTTAGTCGAAACTGTTTC 60.363 47.826 20.54 20.54 42.86 2.78
3444 8733 3.450578 TGCGTTAGTCGAAACTGTTTCT 58.549 40.909 25.64 13.36 42.86 2.52
3445 8734 3.244345 TGCGTTAGTCGAAACTGTTTCTG 59.756 43.478 25.64 19.70 42.86 3.02
3446 8735 3.784488 CGTTAGTCGAAACTGTTTCTGC 58.216 45.455 25.64 18.76 42.86 4.26
3447 8736 3.362693 CGTTAGTCGAAACTGTTTCTGCC 60.363 47.826 25.64 15.29 42.86 4.85
3448 8737 2.325583 AGTCGAAACTGTTTCTGCCA 57.674 45.000 25.64 8.72 37.52 4.92
3449 8738 2.851195 AGTCGAAACTGTTTCTGCCAT 58.149 42.857 25.64 8.88 37.52 4.40
3450 8739 2.808543 AGTCGAAACTGTTTCTGCCATC 59.191 45.455 25.64 12.27 37.52 3.51
3451 8740 2.808543 GTCGAAACTGTTTCTGCCATCT 59.191 45.455 25.64 0.00 37.52 2.90
3452 8741 3.067106 TCGAAACTGTTTCTGCCATCTC 58.933 45.455 25.64 2.94 37.52 2.75
3453 8742 2.807967 CGAAACTGTTTCTGCCATCTCA 59.192 45.455 25.64 0.00 37.52 3.27
3454 8743 3.364366 CGAAACTGTTTCTGCCATCTCAC 60.364 47.826 25.64 1.83 37.52 3.51
3455 8744 2.191128 ACTGTTTCTGCCATCTCACC 57.809 50.000 0.00 0.00 0.00 4.02
3456 8745 1.081892 CTGTTTCTGCCATCTCACCG 58.918 55.000 0.00 0.00 0.00 4.94
3457 8746 0.955428 TGTTTCTGCCATCTCACCGC 60.955 55.000 0.00 0.00 0.00 5.68
3458 8747 0.674895 GTTTCTGCCATCTCACCGCT 60.675 55.000 0.00 0.00 0.00 5.52
3459 8748 0.674581 TTTCTGCCATCTCACCGCTG 60.675 55.000 0.00 0.00 0.00 5.18
3460 8749 2.513204 CTGCCATCTCACCGCTGG 60.513 66.667 0.00 0.00 0.00 4.85
3461 8750 3.320879 CTGCCATCTCACCGCTGGT 62.321 63.158 0.00 0.00 35.62 4.00
3470 8759 4.954970 ACCGCTGGTGCCACTTGG 62.955 66.667 0.00 0.00 32.98 3.61
3480 8769 2.358737 CCACTTGGCACCGGACTC 60.359 66.667 9.46 0.00 0.00 3.36
3481 8770 2.743718 CACTTGGCACCGGACTCT 59.256 61.111 9.46 0.00 0.00 3.24
3482 8771 1.071471 CACTTGGCACCGGACTCTT 59.929 57.895 9.46 0.00 0.00 2.85
3483 8772 0.535102 CACTTGGCACCGGACTCTTT 60.535 55.000 9.46 0.00 0.00 2.52
3484 8773 0.182775 ACTTGGCACCGGACTCTTTT 59.817 50.000 9.46 0.00 0.00 2.27
3485 8774 1.318576 CTTGGCACCGGACTCTTTTT 58.681 50.000 9.46 0.00 0.00 1.94
3486 8775 1.001378 CTTGGCACCGGACTCTTTTTG 60.001 52.381 9.46 0.00 0.00 2.44
3487 8776 1.285950 GGCACCGGACTCTTTTTGC 59.714 57.895 9.46 4.28 0.00 3.68
3488 8777 1.172812 GGCACCGGACTCTTTTTGCT 61.173 55.000 9.46 0.00 0.00 3.91
3489 8778 1.519408 GCACCGGACTCTTTTTGCTA 58.481 50.000 9.46 0.00 0.00 3.49
3490 8779 1.877443 GCACCGGACTCTTTTTGCTAA 59.123 47.619 9.46 0.00 0.00 3.09
3491 8780 2.292292 GCACCGGACTCTTTTTGCTAAA 59.708 45.455 9.46 0.00 0.00 1.85
3492 8781 3.852205 GCACCGGACTCTTTTTGCTAAAC 60.852 47.826 9.46 0.00 0.00 2.01
3493 8782 3.314080 CACCGGACTCTTTTTGCTAAACA 59.686 43.478 9.46 0.00 0.00 2.83
3494 8783 4.023193 CACCGGACTCTTTTTGCTAAACAT 60.023 41.667 9.46 0.00 0.00 2.71
3495 8784 5.180492 CACCGGACTCTTTTTGCTAAACATA 59.820 40.000 9.46 0.00 0.00 2.29
3496 8785 5.944007 ACCGGACTCTTTTTGCTAAACATAT 59.056 36.000 9.46 0.00 0.00 1.78
3497 8786 7.065324 CACCGGACTCTTTTTGCTAAACATATA 59.935 37.037 9.46 0.00 0.00 0.86
3498 8787 7.280205 ACCGGACTCTTTTTGCTAAACATATAG 59.720 37.037 9.46 0.00 0.00 1.31
3499 8788 7.254795 CCGGACTCTTTTTGCTAAACATATAGG 60.255 40.741 0.00 0.00 0.00 2.57
3500 8789 7.418408 GGACTCTTTTTGCTAAACATATAGGC 58.582 38.462 0.00 0.00 0.00 3.93
3501 8790 7.334844 ACTCTTTTTGCTAAACATATAGGCC 57.665 36.000 0.00 0.00 0.00 5.19
3502 8791 7.119387 ACTCTTTTTGCTAAACATATAGGCCT 58.881 34.615 11.78 11.78 0.00 5.19
3503 8792 7.283354 ACTCTTTTTGCTAAACATATAGGCCTC 59.717 37.037 9.68 0.00 0.00 4.70
3504 8793 6.546034 TCTTTTTGCTAAACATATAGGCCTCC 59.454 38.462 9.68 0.00 0.00 4.30
3505 8794 5.646692 TTTGCTAAACATATAGGCCTCCT 57.353 39.130 9.68 0.00 37.71 3.69
3506 8795 5.646692 TTGCTAAACATATAGGCCTCCTT 57.353 39.130 9.68 0.00 34.61 3.36
3507 8796 5.646692 TGCTAAACATATAGGCCTCCTTT 57.353 39.130 9.68 3.37 34.61 3.11
3508 8797 5.376625 TGCTAAACATATAGGCCTCCTTTG 58.623 41.667 9.68 6.33 34.61 2.77
3509 8798 4.762251 GCTAAACATATAGGCCTCCTTTGG 59.238 45.833 9.68 4.12 34.61 3.28
3510 8799 4.881157 AAACATATAGGCCTCCTTTGGT 57.119 40.909 9.68 0.00 34.61 3.67
3511 8800 4.881157 AACATATAGGCCTCCTTTGGTT 57.119 40.909 9.68 4.99 34.61 3.67
3512 8801 4.439253 ACATATAGGCCTCCTTTGGTTC 57.561 45.455 9.68 0.00 34.61 3.62
3513 8802 3.785887 ACATATAGGCCTCCTTTGGTTCA 59.214 43.478 9.68 0.00 34.61 3.18
3514 8803 4.416848 ACATATAGGCCTCCTTTGGTTCAT 59.583 41.667 9.68 0.00 34.61 2.57
3515 8804 5.610982 ACATATAGGCCTCCTTTGGTTCATA 59.389 40.000 9.68 0.00 34.61 2.15
3516 8805 4.713792 ATAGGCCTCCTTTGGTTCATAG 57.286 45.455 9.68 0.00 34.61 2.23
3517 8806 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
3518 8807 1.410224 GGCCTCCTTTGGTTCATAGGG 60.410 57.143 0.00 0.00 34.20 3.53
3519 8808 1.285078 GCCTCCTTTGGTTCATAGGGT 59.715 52.381 4.94 0.00 34.20 4.34
3520 8809 2.508300 GCCTCCTTTGGTTCATAGGGTA 59.492 50.000 4.94 0.00 34.20 3.69
3521 8810 3.433740 GCCTCCTTTGGTTCATAGGGTAG 60.434 52.174 4.94 0.00 34.20 3.18
3522 8811 4.037927 CCTCCTTTGGTTCATAGGGTAGA 58.962 47.826 4.94 0.00 34.20 2.59
3523 8812 4.473559 CCTCCTTTGGTTCATAGGGTAGAA 59.526 45.833 4.94 0.00 34.20 2.10
3524 8813 5.045140 CCTCCTTTGGTTCATAGGGTAGAAA 60.045 44.000 4.94 0.00 34.20 2.52
3525 8814 6.457159 TCCTTTGGTTCATAGGGTAGAAAA 57.543 37.500 4.94 0.00 34.20 2.29
3526 8815 7.039722 TCCTTTGGTTCATAGGGTAGAAAAT 57.960 36.000 4.94 0.00 34.20 1.82
3527 8816 7.116736 TCCTTTGGTTCATAGGGTAGAAAATC 58.883 38.462 4.94 0.00 34.20 2.17
3528 8817 6.889722 CCTTTGGTTCATAGGGTAGAAAATCA 59.110 38.462 0.00 0.00 30.68 2.57
3529 8818 7.561356 CCTTTGGTTCATAGGGTAGAAAATCAT 59.439 37.037 0.00 0.00 30.68 2.45
3530 8819 9.627123 CTTTGGTTCATAGGGTAGAAAATCATA 57.373 33.333 0.00 0.00 0.00 2.15
3531 8820 9.627123 TTTGGTTCATAGGGTAGAAAATCATAG 57.373 33.333 0.00 0.00 0.00 2.23
3532 8821 7.745717 TGGTTCATAGGGTAGAAAATCATAGG 58.254 38.462 0.00 0.00 0.00 2.57
3533 8822 7.570982 TGGTTCATAGGGTAGAAAATCATAGGA 59.429 37.037 0.00 0.00 0.00 2.94
3534 8823 8.097662 GGTTCATAGGGTAGAAAATCATAGGAG 58.902 40.741 0.00 0.00 0.00 3.69
3535 8824 8.652290 GTTCATAGGGTAGAAAATCATAGGAGT 58.348 37.037 0.00 0.00 0.00 3.85
3536 8825 9.892444 TTCATAGGGTAGAAAATCATAGGAGTA 57.108 33.333 0.00 0.00 0.00 2.59
3537 8826 9.892444 TCATAGGGTAGAAAATCATAGGAGTAA 57.108 33.333 0.00 0.00 0.00 2.24
3576 8865 7.798596 ATGAAATGACATGTATCTCAAGTCC 57.201 36.000 0.00 0.00 42.07 3.85
3577 8866 6.950842 TGAAATGACATGTATCTCAAGTCCT 58.049 36.000 0.00 0.00 42.07 3.85
3578 8867 8.078060 TGAAATGACATGTATCTCAAGTCCTA 57.922 34.615 0.00 0.00 42.07 2.94
3579 8868 8.708378 TGAAATGACATGTATCTCAAGTCCTAT 58.292 33.333 0.00 0.00 42.07 2.57
3580 8869 8.899427 AAATGACATGTATCTCAAGTCCTATG 57.101 34.615 0.00 0.00 42.07 2.23
3581 8870 7.846101 ATGACATGTATCTCAAGTCCTATGA 57.154 36.000 0.00 0.00 42.07 2.15
3582 8871 7.282332 TGACATGTATCTCAAGTCCTATGAG 57.718 40.000 0.00 0.00 42.07 2.90
3583 8872 6.836007 TGACATGTATCTCAAGTCCTATGAGT 59.164 38.462 0.00 0.00 42.07 3.41
3584 8873 7.998964 TGACATGTATCTCAAGTCCTATGAGTA 59.001 37.037 0.00 0.00 42.07 2.59
3585 8874 8.402798 ACATGTATCTCAAGTCCTATGAGTAG 57.597 38.462 0.00 0.00 43.77 2.57
3627 8916 9.843704 TCCTATGAAATATGGAGGATAGAAAGA 57.156 33.333 0.00 0.00 31.25 2.52
3652 8941 8.854614 AATTTCTTCATAGGAATAGGATTCCG 57.145 34.615 11.62 0.20 43.23 4.30
3653 8942 6.996180 TTCTTCATAGGAATAGGATTCCGT 57.004 37.500 11.62 3.66 43.23 4.69
3654 8943 6.996180 TCTTCATAGGAATAGGATTCCGTT 57.004 37.500 11.62 0.00 43.23 4.44
3655 8944 6.994221 TCTTCATAGGAATAGGATTCCGTTC 58.006 40.000 11.62 12.70 43.23 3.95
3656 8945 5.740290 TCATAGGAATAGGATTCCGTTCC 57.260 43.478 24.25 24.25 43.23 3.62
3657 8946 5.403512 TCATAGGAATAGGATTCCGTTCCT 58.596 41.667 30.97 30.97 46.81 3.36
3664 8953 3.345508 AGGATTCCGTTCCTACAAACC 57.654 47.619 0.00 0.00 44.50 3.27
3665 8954 2.640826 AGGATTCCGTTCCTACAAACCA 59.359 45.455 0.00 0.00 44.50 3.67
3666 8955 3.073356 AGGATTCCGTTCCTACAAACCAA 59.927 43.478 0.00 0.00 44.50 3.67
3667 8956 3.822167 GGATTCCGTTCCTACAAACCAAA 59.178 43.478 0.00 0.00 32.68 3.28
3668 8957 4.082949 GGATTCCGTTCCTACAAACCAAAG 60.083 45.833 0.00 0.00 32.68 2.77
3669 8958 3.842007 TCCGTTCCTACAAACCAAAGA 57.158 42.857 0.00 0.00 0.00 2.52
3670 8959 3.735591 TCCGTTCCTACAAACCAAAGAG 58.264 45.455 0.00 0.00 0.00 2.85
3671 8960 2.225727 CCGTTCCTACAAACCAAAGAGC 59.774 50.000 0.00 0.00 0.00 4.09
3672 8961 3.139077 CGTTCCTACAAACCAAAGAGCT 58.861 45.455 0.00 0.00 0.00 4.09
3673 8962 3.564225 CGTTCCTACAAACCAAAGAGCTT 59.436 43.478 0.00 0.00 0.00 3.74
3674 8963 4.036380 CGTTCCTACAAACCAAAGAGCTTT 59.964 41.667 0.00 0.00 0.00 3.51
3675 8964 5.237779 CGTTCCTACAAACCAAAGAGCTTTA 59.762 40.000 0.00 0.00 0.00 1.85
3676 8965 6.238538 CGTTCCTACAAACCAAAGAGCTTTAA 60.239 38.462 0.00 0.00 0.00 1.52
3677 8966 7.485810 GTTCCTACAAACCAAAGAGCTTTAAA 58.514 34.615 0.00 0.00 0.00 1.52
3678 8967 7.272037 TCCTACAAACCAAAGAGCTTTAAAG 57.728 36.000 11.02 11.02 0.00 1.85
3679 8968 6.264518 TCCTACAAACCAAAGAGCTTTAAAGG 59.735 38.462 16.78 1.79 0.00 3.11
3680 8969 6.264518 CCTACAAACCAAAGAGCTTTAAAGGA 59.735 38.462 16.78 0.00 0.00 3.36
3681 8970 6.538945 ACAAACCAAAGAGCTTTAAAGGAA 57.461 33.333 16.78 0.00 0.00 3.36
3682 8971 7.124573 ACAAACCAAAGAGCTTTAAAGGAAT 57.875 32.000 16.78 0.00 0.00 3.01
3683 8972 7.564793 ACAAACCAAAGAGCTTTAAAGGAATT 58.435 30.769 16.78 0.00 0.00 2.17
3684 8973 8.046708 ACAAACCAAAGAGCTTTAAAGGAATTT 58.953 29.630 16.78 1.72 0.00 1.82
3685 8974 8.892723 CAAACCAAAGAGCTTTAAAGGAATTTT 58.107 29.630 16.78 0.00 0.00 1.82
3686 8975 9.461312 AAACCAAAGAGCTTTAAAGGAATTTTT 57.539 25.926 16.78 0.00 0.00 1.94
3731 9020 6.857437 AAAATTCCTACAAGATTTCTGGGG 57.143 37.500 0.00 0.00 0.00 4.96
3732 9021 3.366052 TTCCTACAAGATTTCTGGGGC 57.634 47.619 0.00 0.00 0.00 5.80
3733 9022 2.274542 TCCTACAAGATTTCTGGGGCA 58.725 47.619 0.00 0.00 0.00 5.36
3734 9023 2.852449 TCCTACAAGATTTCTGGGGCAT 59.148 45.455 0.00 0.00 0.00 4.40
3735 9024 3.117888 TCCTACAAGATTTCTGGGGCATC 60.118 47.826 0.00 0.00 0.00 3.91
3736 9025 3.117738 CCTACAAGATTTCTGGGGCATCT 60.118 47.826 0.00 0.00 0.00 2.90
3737 9026 3.010200 ACAAGATTTCTGGGGCATCTC 57.990 47.619 0.00 0.00 0.00 2.75
3738 9027 2.305009 CAAGATTTCTGGGGCATCTCC 58.695 52.381 0.00 0.00 0.00 3.71
3739 9028 1.600058 AGATTTCTGGGGCATCTCCA 58.400 50.000 0.00 0.00 36.21 3.86
3740 9029 1.925255 AGATTTCTGGGGCATCTCCAA 59.075 47.619 0.00 0.00 36.21 3.53
3741 9030 2.027385 GATTTCTGGGGCATCTCCAAC 58.973 52.381 0.00 0.00 36.21 3.77
3742 9031 0.322456 TTTCTGGGGCATCTCCAACG 60.322 55.000 0.00 0.00 36.21 4.10
3743 9032 2.819984 TTCTGGGGCATCTCCAACGC 62.820 60.000 0.00 0.00 36.21 4.84
3744 9033 3.329889 TGGGGCATCTCCAACGCT 61.330 61.111 0.00 0.00 36.21 5.07
3745 9034 2.044946 GGGGCATCTCCAACGCTT 60.045 61.111 0.00 0.00 36.21 4.68
3746 9035 1.223487 GGGGCATCTCCAACGCTTA 59.777 57.895 0.00 0.00 36.21 3.09
3747 9036 0.179018 GGGGCATCTCCAACGCTTAT 60.179 55.000 0.00 0.00 36.21 1.73
3748 9037 1.230324 GGGCATCTCCAACGCTTATC 58.770 55.000 0.00 0.00 36.21 1.75
3749 9038 1.202698 GGGCATCTCCAACGCTTATCT 60.203 52.381 0.00 0.00 36.21 1.98
3750 9039 1.869767 GGCATCTCCAACGCTTATCTG 59.130 52.381 0.00 0.00 34.01 2.90
3751 9040 1.262683 GCATCTCCAACGCTTATCTGC 59.737 52.381 0.00 0.00 0.00 4.26
3752 9041 2.554142 CATCTCCAACGCTTATCTGCA 58.446 47.619 0.00 0.00 0.00 4.41
3753 9042 2.988010 TCTCCAACGCTTATCTGCAT 57.012 45.000 0.00 0.00 0.00 3.96
3754 9043 2.826428 TCTCCAACGCTTATCTGCATC 58.174 47.619 0.00 0.00 0.00 3.91
3755 9044 1.869767 CTCCAACGCTTATCTGCATCC 59.130 52.381 0.00 0.00 0.00 3.51
3756 9045 1.209261 TCCAACGCTTATCTGCATCCA 59.791 47.619 0.00 0.00 0.00 3.41
3757 9046 2.158769 TCCAACGCTTATCTGCATCCAT 60.159 45.455 0.00 0.00 0.00 3.41
3758 9047 2.031420 CCAACGCTTATCTGCATCCATG 60.031 50.000 0.00 0.00 0.00 3.66
3759 9048 2.615447 CAACGCTTATCTGCATCCATGT 59.385 45.455 0.00 0.00 0.00 3.21
3760 9049 2.487934 ACGCTTATCTGCATCCATGTC 58.512 47.619 0.00 0.00 0.00 3.06
3761 9050 2.158914 ACGCTTATCTGCATCCATGTCA 60.159 45.455 0.00 0.00 0.00 3.58
3762 9051 2.874086 CGCTTATCTGCATCCATGTCAA 59.126 45.455 0.00 0.00 0.00 3.18
3763 9052 3.059120 CGCTTATCTGCATCCATGTCAAG 60.059 47.826 0.00 0.00 0.00 3.02
3764 9053 4.132336 GCTTATCTGCATCCATGTCAAGA 58.868 43.478 0.00 0.00 0.00 3.02
3765 9054 4.024218 GCTTATCTGCATCCATGTCAAGAC 60.024 45.833 0.00 0.00 0.00 3.01
3766 9055 3.639672 ATCTGCATCCATGTCAAGACA 57.360 42.857 5.24 5.24 46.44 3.41
3781 9070 6.548171 TGTCAAGACAAGTTTAAAGAAACCG 58.452 36.000 0.00 0.00 40.07 4.44
3785 9074 8.083462 TCAAGACAAGTTTAAAGAAACCGTTTT 58.917 29.630 0.00 0.00 45.21 2.43
3838 9132 7.284034 ATTTCATGAAACTTGACTGAGTTCAGT 59.716 33.333 22.71 14.27 45.23 3.41
3895 9191 9.620660 CTATGTTTTGTCCGCTTAACTAAAAAT 57.379 29.630 0.00 0.00 0.00 1.82
3944 9240 9.909644 TTCTAATTCTACAACACTCAGAGTAAC 57.090 33.333 1.67 0.00 0.00 2.50
3991 9287 8.492673 TCCATAAATATCGTGCAAATATCTCC 57.507 34.615 0.00 0.00 0.00 3.71
3992 9288 7.277760 TCCATAAATATCGTGCAAATATCTCCG 59.722 37.037 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.969917 CACCCAAATGGCCATCCGAA 60.970 55.000 21.08 0.00 37.83 4.30
1 2 1.379710 CACCCAAATGGCCATCCGA 60.380 57.895 21.08 0.00 37.83 4.55
2 3 1.666209 GACACCCAAATGGCCATCCG 61.666 60.000 21.08 13.07 37.83 4.18
3 4 0.324645 AGACACCCAAATGGCCATCC 60.325 55.000 21.08 1.30 37.83 3.51
4 5 2.435372 TAGACACCCAAATGGCCATC 57.565 50.000 21.08 4.39 37.83 3.51
5 6 2.024080 ACATAGACACCCAAATGGCCAT 60.024 45.455 14.09 14.09 37.83 4.40
6 7 1.357420 ACATAGACACCCAAATGGCCA 59.643 47.619 8.56 8.56 37.83 5.36
7 8 2.143876 ACATAGACACCCAAATGGCC 57.856 50.000 0.00 0.00 37.83 5.36
8 9 2.825532 ACAACATAGACACCCAAATGGC 59.174 45.455 0.00 0.00 37.83 4.40
9 10 4.078537 TCACAACATAGACACCCAAATGG 58.921 43.478 0.00 0.00 41.37 3.16
10 11 4.761739 AGTCACAACATAGACACCCAAATG 59.238 41.667 0.00 0.00 37.23 2.32
11 12 4.985538 AGTCACAACATAGACACCCAAAT 58.014 39.130 0.00 0.00 37.23 2.32
12 13 4.102524 AGAGTCACAACATAGACACCCAAA 59.897 41.667 0.00 0.00 37.23 3.28
13 14 3.646162 AGAGTCACAACATAGACACCCAA 59.354 43.478 0.00 0.00 37.23 4.12
14 15 3.006859 CAGAGTCACAACATAGACACCCA 59.993 47.826 0.00 0.00 37.23 4.51
15 16 3.589988 CAGAGTCACAACATAGACACCC 58.410 50.000 0.00 0.00 37.23 4.61
16 17 2.996621 GCAGAGTCACAACATAGACACC 59.003 50.000 0.00 0.00 37.23 4.16
17 18 2.996621 GGCAGAGTCACAACATAGACAC 59.003 50.000 0.00 0.00 37.23 3.67
18 19 2.899900 AGGCAGAGTCACAACATAGACA 59.100 45.455 0.00 0.00 37.23 3.41
19 20 3.257393 CAGGCAGAGTCACAACATAGAC 58.743 50.000 0.00 0.00 35.02 2.59
20 21 2.234661 CCAGGCAGAGTCACAACATAGA 59.765 50.000 0.00 0.00 0.00 1.98
21 22 2.027745 ACCAGGCAGAGTCACAACATAG 60.028 50.000 0.00 0.00 0.00 2.23
22 23 1.977854 ACCAGGCAGAGTCACAACATA 59.022 47.619 0.00 0.00 0.00 2.29
23 24 0.767375 ACCAGGCAGAGTCACAACAT 59.233 50.000 0.00 0.00 0.00 2.71
24 25 0.179048 CACCAGGCAGAGTCACAACA 60.179 55.000 0.00 0.00 0.00 3.33
25 26 0.886490 CCACCAGGCAGAGTCACAAC 60.886 60.000 0.00 0.00 0.00 3.32
26 27 1.451504 CCACCAGGCAGAGTCACAA 59.548 57.895 0.00 0.00 0.00 3.33
27 28 3.150949 CCACCAGGCAGAGTCACA 58.849 61.111 0.00 0.00 0.00 3.58
46 47 5.865552 GCATACGCCCGACTTTATAGATAAA 59.134 40.000 0.00 0.00 0.00 1.40
47 48 5.404946 GCATACGCCCGACTTTATAGATAA 58.595 41.667 0.00 0.00 0.00 1.75
48 49 4.990257 GCATACGCCCGACTTTATAGATA 58.010 43.478 0.00 0.00 0.00 1.98
49 50 3.846360 GCATACGCCCGACTTTATAGAT 58.154 45.455 0.00 0.00 0.00 1.98
50 51 3.293311 GCATACGCCCGACTTTATAGA 57.707 47.619 0.00 0.00 0.00 1.98
63 64 6.613755 TTATTTTAGAGGAAAGGCATACGC 57.386 37.500 0.00 0.00 37.44 4.42
88 89 5.557866 AGTAGGAAACGAGGCATACTTTTT 58.442 37.500 0.00 0.00 28.27 1.94
89 90 5.161943 AGTAGGAAACGAGGCATACTTTT 57.838 39.130 0.00 0.00 28.27 2.27
90 91 4.820894 AGTAGGAAACGAGGCATACTTT 57.179 40.909 0.00 0.00 28.27 2.66
113 114 1.001393 AAATCCGACACCCCGCAAT 60.001 52.632 0.00 0.00 0.00 3.56
137 138 1.218047 CCTGCGGAGAAACGGATGA 59.782 57.895 5.10 0.00 32.65 2.92
153 154 2.621668 GGCCATAAAACTCCAGAAGCCT 60.622 50.000 0.00 0.00 35.00 4.58
179 180 1.667236 CAGGTGTGAAGTTGTGCAGA 58.333 50.000 0.00 0.00 0.00 4.26
278 279 1.594331 GGACGAGGCAGAACAACTTT 58.406 50.000 0.00 0.00 0.00 2.66
314 315 4.695217 TTCGCCCACTTGAAATATTGAC 57.305 40.909 0.00 0.00 0.00 3.18
323 324 1.301401 CTCGGTTTCGCCCACTTGA 60.301 57.895 0.00 0.00 36.13 3.02
334 335 1.836383 GACGCGTCATATCTCGGTTT 58.164 50.000 33.09 0.00 0.00 3.27
429 430 1.132500 GGATCGGGAAGGGAGACATT 58.868 55.000 0.00 0.00 36.80 2.71
462 463 2.227865 GAGCATTTGTAAACTCCGGCAA 59.772 45.455 0.00 0.00 0.00 4.52
498 499 2.739287 CCGCGGACGCCAGTTAAA 60.739 61.111 24.07 0.00 38.22 1.52
543 544 0.911769 TTGCTCATCGGTTGGAGGAT 59.088 50.000 0.00 0.00 34.49 3.24
548 549 4.963276 TTTTATCTTGCTCATCGGTTGG 57.037 40.909 0.00 0.00 0.00 3.77
553 554 6.067669 GCGAGTATTTTTATCTTGCTCATCG 58.932 40.000 0.00 0.00 36.15 3.84
568 569 3.753294 ATCCGGATTGAGCGAGTATTT 57.247 42.857 12.38 0.00 0.00 1.40
623 624 8.200792 CAGCAAGTATTTCCTCTCTAATACAGT 58.799 37.037 0.00 0.00 38.88 3.55
624 625 8.417106 TCAGCAAGTATTTCCTCTCTAATACAG 58.583 37.037 0.00 0.00 38.88 2.74
625 626 8.306313 TCAGCAAGTATTTCCTCTCTAATACA 57.694 34.615 0.00 0.00 38.88 2.29
626 627 7.870445 CCTCAGCAAGTATTTCCTCTCTAATAC 59.130 40.741 0.00 0.00 37.45 1.89
627 628 7.015682 CCCTCAGCAAGTATTTCCTCTCTAATA 59.984 40.741 0.00 0.00 0.00 0.98
628 629 6.183361 CCCTCAGCAAGTATTTCCTCTCTAAT 60.183 42.308 0.00 0.00 0.00 1.73
629 630 5.129485 CCCTCAGCAAGTATTTCCTCTCTAA 59.871 44.000 0.00 0.00 0.00 2.10
630 631 4.651503 CCCTCAGCAAGTATTTCCTCTCTA 59.348 45.833 0.00 0.00 0.00 2.43
631 632 3.454082 CCCTCAGCAAGTATTTCCTCTCT 59.546 47.826 0.00 0.00 0.00 3.10
632 633 3.432890 CCCCTCAGCAAGTATTTCCTCTC 60.433 52.174 0.00 0.00 0.00 3.20
633 634 2.507471 CCCCTCAGCAAGTATTTCCTCT 59.493 50.000 0.00 0.00 0.00 3.69
634 635 2.505819 TCCCCTCAGCAAGTATTTCCTC 59.494 50.000 0.00 0.00 0.00 3.71
635 636 2.562296 TCCCCTCAGCAAGTATTTCCT 58.438 47.619 0.00 0.00 0.00 3.36
636 637 3.366052 TTCCCCTCAGCAAGTATTTCC 57.634 47.619 0.00 0.00 0.00 3.13
637 638 4.767409 ACTTTTCCCCTCAGCAAGTATTTC 59.233 41.667 0.00 0.00 0.00 2.17
638 639 4.740902 ACTTTTCCCCTCAGCAAGTATTT 58.259 39.130 0.00 0.00 0.00 1.40
639 640 4.336280 GACTTTTCCCCTCAGCAAGTATT 58.664 43.478 0.00 0.00 0.00 1.89
640 641 3.619979 CGACTTTTCCCCTCAGCAAGTAT 60.620 47.826 0.00 0.00 0.00 2.12
641 642 2.289444 CGACTTTTCCCCTCAGCAAGTA 60.289 50.000 0.00 0.00 0.00 2.24
642 643 1.543429 CGACTTTTCCCCTCAGCAAGT 60.543 52.381 0.00 0.00 0.00 3.16
643 644 1.160137 CGACTTTTCCCCTCAGCAAG 58.840 55.000 0.00 0.00 0.00 4.01
667 668 6.128254 ACTGTTTTTCTTAAGCTATTCTCGCC 60.128 38.462 0.00 0.00 0.00 5.54
681 682 1.529865 GCGGTAGCGACTGTTTTTCTT 59.470 47.619 20.16 0.00 34.09 2.52
683 684 3.652018 GCGGTAGCGACTGTTTTTC 57.348 52.632 20.16 0.00 34.09 2.29
742 753 1.227556 GGAGGTGTGACACGCAACT 60.228 57.895 20.15 9.30 45.13 3.16
745 756 3.207547 CTCGGAGGTGTGACACGCA 62.208 63.158 20.15 0.00 34.83 5.24
821 832 0.107654 GAGCATACCTGGTCCACCAC 60.108 60.000 0.63 0.00 42.77 4.16
950 963 4.591924 ACGAGGGATAATAGGGTACAAAGG 59.408 45.833 0.00 0.00 0.00 3.11
1092 1108 1.392710 CCACCTCGCCCTTCGTATCT 61.393 60.000 0.00 0.00 39.67 1.98
1093 1109 1.067582 CCACCTCGCCCTTCGTATC 59.932 63.158 0.00 0.00 39.67 2.24
1094 1110 3.090219 GCCACCTCGCCCTTCGTAT 62.090 63.158 0.00 0.00 39.67 3.06
1103 1119 3.701604 CTCACTACGGCCACCTCGC 62.702 68.421 2.24 0.00 0.00 5.03
1125 1141 0.034767 CATCTCAAGGCCCTGCTTCA 60.035 55.000 0.00 0.00 0.00 3.02
1432 1460 2.669569 GCAACCTTGAGCCTCGCA 60.670 61.111 0.00 0.00 0.00 5.10
1794 1825 4.812814 TCAGCATGACGACGATGG 57.187 55.556 0.00 0.00 42.56 3.51
1836 1870 3.044986 CCGTCAGAACAAAGCAACATTG 58.955 45.455 0.00 0.00 0.00 2.82
2600 2647 2.262915 GGTCTCCTCACCGCAGTG 59.737 66.667 0.00 0.00 46.00 3.66
2637 2684 0.586319 CACCGCTGTACAGTTTGTGG 59.414 55.000 23.44 16.33 36.29 4.17
2681 2992 3.199880 ACAAGAGAACTGAACCACCAG 57.800 47.619 0.00 0.00 39.93 4.00
2812 6627 4.815269 ACTTCACAAAGCAGCTAGTAGAG 58.185 43.478 0.00 2.25 35.81 2.43
2883 6698 2.803956 GACAATCGGAAGTTCGGAACAA 59.196 45.455 21.86 3.52 29.49 2.83
3027 6882 8.948631 ACCAATACAACTCATCACAACTATAG 57.051 34.615 0.00 0.00 0.00 1.31
3029 6884 8.540388 ACTACCAATACAACTCATCACAACTAT 58.460 33.333 0.00 0.00 0.00 2.12
3089 6955 1.692519 ACACCCACACTTCTACCACTC 59.307 52.381 0.00 0.00 0.00 3.51
3109 8329 4.343323 CATGTCCCGCCACACCCA 62.343 66.667 0.00 0.00 0.00 4.51
3195 8426 1.202651 AGTGGACGAAACCTGTGAAGG 60.203 52.381 0.00 0.00 0.00 3.46
3196 8427 2.135933 GAGTGGACGAAACCTGTGAAG 58.864 52.381 0.00 0.00 0.00 3.02
3197 8428 1.202604 GGAGTGGACGAAACCTGTGAA 60.203 52.381 0.00 0.00 0.00 3.18
3199 8430 0.393077 AGGAGTGGACGAAACCTGTG 59.607 55.000 0.00 0.00 0.00 3.66
3200 8431 1.617357 GTAGGAGTGGACGAAACCTGT 59.383 52.381 0.00 0.00 32.90 4.00
3337 8568 4.391523 GCAACCAAGCACAAAAGAGAAAAA 59.608 37.500 0.00 0.00 0.00 1.94
3366 8655 1.065418 CCAATCCCTACAACCGCTTCT 60.065 52.381 0.00 0.00 0.00 2.85
3407 8696 1.811860 GCAGGCACCCAACATCATC 59.188 57.895 0.00 0.00 0.00 2.92
3412 8701 1.599518 CTAACGCAGGCACCCAACA 60.600 57.895 0.00 0.00 0.00 3.33
3417 8706 0.947180 TTTCGACTAACGCAGGCACC 60.947 55.000 0.00 0.00 42.26 5.01
3428 8717 3.462483 TGGCAGAAACAGTTTCGACTA 57.538 42.857 18.43 10.82 44.29 2.59
3430 8719 2.808543 AGATGGCAGAAACAGTTTCGAC 59.191 45.455 18.43 15.79 44.29 4.20
3431 8720 3.067106 GAGATGGCAGAAACAGTTTCGA 58.933 45.455 18.43 6.50 44.29 3.71
3433 8722 3.057946 GGTGAGATGGCAGAAACAGTTTC 60.058 47.826 17.11 17.11 39.96 2.78
3434 8723 2.887152 GGTGAGATGGCAGAAACAGTTT 59.113 45.455 0.00 0.00 0.00 2.66
3435 8724 2.508526 GGTGAGATGGCAGAAACAGTT 58.491 47.619 0.00 0.00 0.00 3.16
3436 8725 1.609061 CGGTGAGATGGCAGAAACAGT 60.609 52.381 0.00 0.00 0.00 3.55
3437 8726 1.081892 CGGTGAGATGGCAGAAACAG 58.918 55.000 0.00 0.00 0.00 3.16
3438 8727 0.955428 GCGGTGAGATGGCAGAAACA 60.955 55.000 0.00 0.00 0.00 2.83
3439 8728 0.674895 AGCGGTGAGATGGCAGAAAC 60.675 55.000 0.00 0.00 0.00 2.78
3440 8729 0.674581 CAGCGGTGAGATGGCAGAAA 60.675 55.000 9.50 0.00 31.47 2.52
3441 8730 1.078918 CAGCGGTGAGATGGCAGAA 60.079 57.895 9.50 0.00 31.47 3.02
3442 8731 2.580815 CAGCGGTGAGATGGCAGA 59.419 61.111 9.50 0.00 31.47 4.26
3453 8742 4.954970 CCAAGTGGCACCAGCGGT 62.955 66.667 15.27 0.00 43.41 5.68
3463 8752 2.358737 GAGTCCGGTGCCAAGTGG 60.359 66.667 0.00 0.00 38.53 4.00
3464 8753 0.535102 AAAGAGTCCGGTGCCAAGTG 60.535 55.000 0.00 0.00 0.00 3.16
3465 8754 0.182775 AAAAGAGTCCGGTGCCAAGT 59.817 50.000 0.00 0.00 0.00 3.16
3466 8755 1.001378 CAAAAAGAGTCCGGTGCCAAG 60.001 52.381 0.00 0.00 0.00 3.61
3467 8756 1.028905 CAAAAAGAGTCCGGTGCCAA 58.971 50.000 0.00 0.00 0.00 4.52
3468 8757 1.452145 GCAAAAAGAGTCCGGTGCCA 61.452 55.000 0.00 0.00 0.00 4.92
3469 8758 1.172812 AGCAAAAAGAGTCCGGTGCC 61.173 55.000 0.00 0.00 32.38 5.01
3470 8759 1.519408 TAGCAAAAAGAGTCCGGTGC 58.481 50.000 0.00 0.36 0.00 5.01
3471 8760 3.314080 TGTTTAGCAAAAAGAGTCCGGTG 59.686 43.478 0.00 0.00 0.00 4.94
3472 8761 3.547746 TGTTTAGCAAAAAGAGTCCGGT 58.452 40.909 0.00 0.00 0.00 5.28
3473 8762 4.766404 ATGTTTAGCAAAAAGAGTCCGG 57.234 40.909 0.00 0.00 0.00 5.14
3474 8763 7.630924 CCTATATGTTTAGCAAAAAGAGTCCG 58.369 38.462 0.00 0.00 0.00 4.79
3475 8764 7.418408 GCCTATATGTTTAGCAAAAAGAGTCC 58.582 38.462 0.00 0.00 0.00 3.85
3476 8765 7.283354 AGGCCTATATGTTTAGCAAAAAGAGTC 59.717 37.037 1.29 0.00 0.00 3.36
3477 8766 7.119387 AGGCCTATATGTTTAGCAAAAAGAGT 58.881 34.615 1.29 0.00 0.00 3.24
3478 8767 7.255277 GGAGGCCTATATGTTTAGCAAAAAGAG 60.255 40.741 4.42 0.00 0.00 2.85
3479 8768 6.546034 GGAGGCCTATATGTTTAGCAAAAAGA 59.454 38.462 4.42 0.00 0.00 2.52
3480 8769 6.547510 AGGAGGCCTATATGTTTAGCAAAAAG 59.452 38.462 4.42 0.00 28.47 2.27
3481 8770 6.431722 AGGAGGCCTATATGTTTAGCAAAAA 58.568 36.000 4.42 0.00 28.47 1.94
3482 8771 6.013554 AGGAGGCCTATATGTTTAGCAAAA 57.986 37.500 4.42 0.00 28.47 2.44
3483 8772 5.646692 AGGAGGCCTATATGTTTAGCAAA 57.353 39.130 4.42 0.00 28.47 3.68
3484 8773 5.646692 AAGGAGGCCTATATGTTTAGCAA 57.353 39.130 4.42 0.00 31.13 3.91
3485 8774 5.376625 CAAAGGAGGCCTATATGTTTAGCA 58.623 41.667 4.42 0.00 31.13 3.49
3486 8775 4.762251 CCAAAGGAGGCCTATATGTTTAGC 59.238 45.833 4.42 0.00 31.13 3.09
3487 8776 5.941788 ACCAAAGGAGGCCTATATGTTTAG 58.058 41.667 4.42 0.00 31.13 1.85
3488 8777 5.987019 ACCAAAGGAGGCCTATATGTTTA 57.013 39.130 4.42 0.00 31.13 2.01
3489 8778 4.881157 ACCAAAGGAGGCCTATATGTTT 57.119 40.909 4.42 0.00 31.13 2.83
3490 8779 4.229582 TGAACCAAAGGAGGCCTATATGTT 59.770 41.667 4.42 4.79 31.13 2.71
3491 8780 3.785887 TGAACCAAAGGAGGCCTATATGT 59.214 43.478 4.42 0.00 31.13 2.29
3492 8781 4.437682 TGAACCAAAGGAGGCCTATATG 57.562 45.455 4.42 2.40 31.13 1.78
3493 8782 5.251700 CCTATGAACCAAAGGAGGCCTATAT 59.748 44.000 4.42 0.00 31.13 0.86
3494 8783 4.597507 CCTATGAACCAAAGGAGGCCTATA 59.402 45.833 4.42 0.00 31.13 1.31
3495 8784 3.395941 CCTATGAACCAAAGGAGGCCTAT 59.604 47.826 4.42 0.00 31.13 2.57
3496 8785 2.777692 CCTATGAACCAAAGGAGGCCTA 59.222 50.000 4.42 0.00 31.13 3.93
3497 8786 1.566231 CCTATGAACCAAAGGAGGCCT 59.434 52.381 3.86 3.86 33.87 5.19
3498 8787 1.410224 CCCTATGAACCAAAGGAGGCC 60.410 57.143 0.00 0.00 31.64 5.19
3499 8788 1.285078 ACCCTATGAACCAAAGGAGGC 59.715 52.381 0.00 0.00 31.64 4.70
3500 8789 4.037927 TCTACCCTATGAACCAAAGGAGG 58.962 47.826 0.00 0.00 31.64 4.30
3501 8790 5.693769 TTCTACCCTATGAACCAAAGGAG 57.306 43.478 0.00 0.00 31.64 3.69
3502 8791 6.457159 TTTTCTACCCTATGAACCAAAGGA 57.543 37.500 0.00 0.00 31.64 3.36
3503 8792 6.889722 TGATTTTCTACCCTATGAACCAAAGG 59.110 38.462 0.00 0.00 0.00 3.11
3504 8793 7.938140 TGATTTTCTACCCTATGAACCAAAG 57.062 36.000 0.00 0.00 0.00 2.77
3505 8794 9.627123 CTATGATTTTCTACCCTATGAACCAAA 57.373 33.333 0.00 0.00 0.00 3.28
3506 8795 8.217799 CCTATGATTTTCTACCCTATGAACCAA 58.782 37.037 0.00 0.00 0.00 3.67
3507 8796 7.570982 TCCTATGATTTTCTACCCTATGAACCA 59.429 37.037 0.00 0.00 0.00 3.67
3508 8797 7.974504 TCCTATGATTTTCTACCCTATGAACC 58.025 38.462 0.00 0.00 0.00 3.62
3509 8798 8.652290 ACTCCTATGATTTTCTACCCTATGAAC 58.348 37.037 0.00 0.00 0.00 3.18
3510 8799 8.798975 ACTCCTATGATTTTCTACCCTATGAA 57.201 34.615 0.00 0.00 0.00 2.57
3511 8800 9.892444 TTACTCCTATGATTTTCTACCCTATGA 57.108 33.333 0.00 0.00 0.00 2.15
3559 8848 7.283625 ACTCATAGGACTTGAGATACATGTC 57.716 40.000 0.00 0.00 46.28 3.06
3560 8849 8.402798 CTACTCATAGGACTTGAGATACATGT 57.597 38.462 2.69 2.69 42.63 3.21
3601 8890 9.843704 TCTTTCTATCCTCCATATTTCATAGGA 57.156 33.333 0.00 0.00 40.50 2.94
3626 8915 8.940952 CGGAATCCTATTCCTATGAAGAAATTC 58.059 37.037 14.93 0.00 36.45 2.17
3627 8916 8.440771 ACGGAATCCTATTCCTATGAAGAAATT 58.559 33.333 14.93 0.00 36.45 1.82
3628 8917 7.978925 ACGGAATCCTATTCCTATGAAGAAAT 58.021 34.615 14.93 0.00 36.45 2.17
3629 8918 7.374975 ACGGAATCCTATTCCTATGAAGAAA 57.625 36.000 14.93 0.00 36.45 2.52
3630 8919 6.996180 ACGGAATCCTATTCCTATGAAGAA 57.004 37.500 14.93 0.00 36.45 2.52
3631 8920 6.014499 GGAACGGAATCCTATTCCTATGAAGA 60.014 42.308 19.29 0.00 35.13 2.87
3632 8921 6.166982 GGAACGGAATCCTATTCCTATGAAG 58.833 44.000 19.29 3.20 35.13 3.02
3633 8922 6.110411 GGAACGGAATCCTATTCCTATGAA 57.890 41.667 19.29 0.00 35.13 2.57
3634 8923 5.740290 GGAACGGAATCCTATTCCTATGA 57.260 43.478 19.29 0.00 35.13 2.15
3645 8934 3.062122 TGGTTTGTAGGAACGGAATCC 57.938 47.619 0.00 0.00 39.96 3.01
3646 8935 4.758165 TCTTTGGTTTGTAGGAACGGAATC 59.242 41.667 0.00 0.00 0.00 2.52
3647 8936 4.721132 TCTTTGGTTTGTAGGAACGGAAT 58.279 39.130 0.00 0.00 0.00 3.01
3648 8937 4.131596 CTCTTTGGTTTGTAGGAACGGAA 58.868 43.478 0.00 0.00 0.00 4.30
3649 8938 3.735591 CTCTTTGGTTTGTAGGAACGGA 58.264 45.455 0.00 0.00 0.00 4.69
3650 8939 2.225727 GCTCTTTGGTTTGTAGGAACGG 59.774 50.000 0.00 0.00 0.00 4.44
3651 8940 3.139077 AGCTCTTTGGTTTGTAGGAACG 58.861 45.455 0.00 0.00 0.00 3.95
3652 8941 5.515797 AAAGCTCTTTGGTTTGTAGGAAC 57.484 39.130 0.00 0.00 43.72 3.62
3653 8942 7.201875 CCTTTAAAGCTCTTTGGTTTGTAGGAA 60.202 37.037 9.86 0.00 44.83 3.36
3654 8943 6.264518 CCTTTAAAGCTCTTTGGTTTGTAGGA 59.735 38.462 9.86 0.00 44.83 2.94
3655 8944 6.264518 TCCTTTAAAGCTCTTTGGTTTGTAGG 59.735 38.462 9.86 12.21 44.83 3.18
3656 8945 7.272037 TCCTTTAAAGCTCTTTGGTTTGTAG 57.728 36.000 9.86 1.57 44.83 2.74
3657 8946 7.648039 TTCCTTTAAAGCTCTTTGGTTTGTA 57.352 32.000 9.86 0.00 44.83 2.41
3658 8947 6.538945 TTCCTTTAAAGCTCTTTGGTTTGT 57.461 33.333 9.86 0.00 44.83 2.83
3659 8948 8.437360 AAATTCCTTTAAAGCTCTTTGGTTTG 57.563 30.769 9.86 0.00 44.83 2.93
3660 8949 9.461312 AAAAATTCCTTTAAAGCTCTTTGGTTT 57.539 25.926 9.86 0.00 46.54 3.27
3705 8994 9.640952 CCCCAGAAATCTTGTAGGAATTTTATA 57.359 33.333 0.00 0.00 0.00 0.98
3706 8995 7.069950 GCCCCAGAAATCTTGTAGGAATTTTAT 59.930 37.037 0.00 0.00 0.00 1.40
3707 8996 6.379988 GCCCCAGAAATCTTGTAGGAATTTTA 59.620 38.462 0.00 0.00 0.00 1.52
3708 8997 5.187772 GCCCCAGAAATCTTGTAGGAATTTT 59.812 40.000 0.00 0.00 0.00 1.82
3709 8998 4.711846 GCCCCAGAAATCTTGTAGGAATTT 59.288 41.667 0.00 0.00 0.00 1.82
3710 8999 4.264352 TGCCCCAGAAATCTTGTAGGAATT 60.264 41.667 0.00 0.00 0.00 2.17
3711 9000 3.269381 TGCCCCAGAAATCTTGTAGGAAT 59.731 43.478 0.00 0.00 0.00 3.01
3712 9001 2.647299 TGCCCCAGAAATCTTGTAGGAA 59.353 45.455 0.00 0.00 0.00 3.36
3713 9002 2.274542 TGCCCCAGAAATCTTGTAGGA 58.725 47.619 0.00 0.00 0.00 2.94
3714 9003 2.806945 TGCCCCAGAAATCTTGTAGG 57.193 50.000 0.00 0.00 0.00 3.18
3715 9004 4.133078 GAGATGCCCCAGAAATCTTGTAG 58.867 47.826 0.00 0.00 30.83 2.74
3716 9005 3.117888 GGAGATGCCCCAGAAATCTTGTA 60.118 47.826 0.00 0.00 30.83 2.41
3717 9006 2.357569 GGAGATGCCCCAGAAATCTTGT 60.358 50.000 0.00 0.00 30.83 3.16
3718 9007 2.305009 GGAGATGCCCCAGAAATCTTG 58.695 52.381 0.00 0.00 30.83 3.02
3719 9008 1.925255 TGGAGATGCCCCAGAAATCTT 59.075 47.619 0.00 0.00 34.97 2.40
3720 9009 1.600058 TGGAGATGCCCCAGAAATCT 58.400 50.000 0.00 0.00 34.97 2.40
3721 9010 2.027385 GTTGGAGATGCCCCAGAAATC 58.973 52.381 0.00 0.00 34.77 2.17
3722 9011 1.683011 CGTTGGAGATGCCCCAGAAAT 60.683 52.381 0.00 0.00 34.77 2.17
3723 9012 0.322456 CGTTGGAGATGCCCCAGAAA 60.322 55.000 0.00 0.00 34.77 2.52
3724 9013 1.299648 CGTTGGAGATGCCCCAGAA 59.700 57.895 0.00 0.00 34.77 3.02
3725 9014 2.989639 CGTTGGAGATGCCCCAGA 59.010 61.111 0.00 0.00 34.77 3.86
3726 9015 2.825836 GCGTTGGAGATGCCCCAG 60.826 66.667 0.00 0.00 34.77 4.45
3727 9016 1.558167 TAAGCGTTGGAGATGCCCCA 61.558 55.000 0.00 0.00 41.38 4.96
3728 9017 0.179018 ATAAGCGTTGGAGATGCCCC 60.179 55.000 0.00 0.00 41.38 5.80
3729 9018 1.202698 AGATAAGCGTTGGAGATGCCC 60.203 52.381 0.00 0.00 41.38 5.36
3730 9019 1.869767 CAGATAAGCGTTGGAGATGCC 59.130 52.381 0.00 0.00 41.38 4.40
3731 9020 1.262683 GCAGATAAGCGTTGGAGATGC 59.737 52.381 0.00 0.00 40.73 3.91
3732 9021 2.554142 TGCAGATAAGCGTTGGAGATG 58.446 47.619 0.00 0.00 37.31 2.90
3733 9022 2.988010 TGCAGATAAGCGTTGGAGAT 57.012 45.000 0.00 0.00 37.31 2.75
3734 9023 2.483714 GGATGCAGATAAGCGTTGGAGA 60.484 50.000 0.00 0.00 37.31 3.71
3735 9024 1.869767 GGATGCAGATAAGCGTTGGAG 59.130 52.381 0.00 0.00 37.31 3.86
3736 9025 1.209261 TGGATGCAGATAAGCGTTGGA 59.791 47.619 0.00 0.00 37.31 3.53
3737 9026 1.667236 TGGATGCAGATAAGCGTTGG 58.333 50.000 0.00 0.00 37.31 3.77
3738 9027 2.615447 ACATGGATGCAGATAAGCGTTG 59.385 45.455 0.00 0.00 37.31 4.10
3739 9028 2.874701 GACATGGATGCAGATAAGCGTT 59.125 45.455 0.00 0.00 37.31 4.84
3740 9029 2.158914 TGACATGGATGCAGATAAGCGT 60.159 45.455 0.00 0.00 37.31 5.07
3741 9030 2.486918 TGACATGGATGCAGATAAGCG 58.513 47.619 0.00 0.00 37.31 4.68
3742 9031 4.024218 GTCTTGACATGGATGCAGATAAGC 60.024 45.833 0.00 0.00 0.00 3.09
3743 9032 5.121105 TGTCTTGACATGGATGCAGATAAG 58.879 41.667 0.00 0.00 0.00 1.73
3744 9033 5.101648 TGTCTTGACATGGATGCAGATAA 57.898 39.130 0.00 0.00 0.00 1.75
3745 9034 4.758773 TGTCTTGACATGGATGCAGATA 57.241 40.909 0.00 0.00 0.00 1.98
3746 9035 3.639672 TGTCTTGACATGGATGCAGAT 57.360 42.857 0.00 0.00 0.00 2.90
3747 9036 3.244665 ACTTGTCTTGACATGGATGCAGA 60.245 43.478 17.09 0.00 0.00 4.26
3748 9037 3.079578 ACTTGTCTTGACATGGATGCAG 58.920 45.455 17.09 7.79 0.00 4.41
3749 9038 3.144657 ACTTGTCTTGACATGGATGCA 57.855 42.857 17.09 0.00 0.00 3.96
3750 9039 4.510038 AAACTTGTCTTGACATGGATGC 57.490 40.909 17.09 0.00 0.00 3.91
3751 9040 7.874940 TCTTTAAACTTGTCTTGACATGGATG 58.125 34.615 17.09 0.00 0.00 3.51
3752 9041 8.463930 TTCTTTAAACTTGTCTTGACATGGAT 57.536 30.769 17.09 9.97 0.00 3.41
3753 9042 7.873719 TTCTTTAAACTTGTCTTGACATGGA 57.126 32.000 17.09 4.97 0.00 3.41
3754 9043 7.435192 GGTTTCTTTAAACTTGTCTTGACATGG 59.565 37.037 17.09 10.50 43.76 3.66
3755 9044 7.165812 CGGTTTCTTTAAACTTGTCTTGACATG 59.834 37.037 12.97 12.97 43.76 3.21
3756 9045 7.148137 ACGGTTTCTTTAAACTTGTCTTGACAT 60.148 33.333 4.18 0.00 43.76 3.06
3757 9046 6.149807 ACGGTTTCTTTAAACTTGTCTTGACA 59.850 34.615 0.00 0.00 43.76 3.58
3758 9047 6.549061 ACGGTTTCTTTAAACTTGTCTTGAC 58.451 36.000 0.00 0.00 43.76 3.18
3759 9048 6.746745 ACGGTTTCTTTAAACTTGTCTTGA 57.253 33.333 0.00 0.00 43.76 3.02
3760 9049 7.806149 AAACGGTTTCTTTAAACTTGTCTTG 57.194 32.000 0.00 0.00 43.76 3.02
3761 9050 8.083462 TCAAAACGGTTTCTTTAAACTTGTCTT 58.917 29.630 6.57 0.00 43.76 3.01
3762 9051 7.595604 TCAAAACGGTTTCTTTAAACTTGTCT 58.404 30.769 6.57 0.00 43.76 3.41
3763 9052 7.800015 TCAAAACGGTTTCTTTAAACTTGTC 57.200 32.000 6.57 0.00 43.76 3.18
3764 9053 8.590719 TTTCAAAACGGTTTCTTTAAACTTGT 57.409 26.923 6.57 0.00 43.76 3.16
3806 9100 7.999679 TCAGTCAAGTTTCATGAAATTTGTCT 58.000 30.769 35.69 33.40 43.79 3.41
3808 9102 7.775120 ACTCAGTCAAGTTTCATGAAATTTGT 58.225 30.769 35.69 24.46 43.79 2.83
3810 9104 8.469200 TGAACTCAGTCAAGTTTCATGAAATTT 58.531 29.630 23.05 21.31 39.55 1.82
3956 9252 9.230122 TGCACGATATTTATGGATGAATTATGT 57.770 29.630 0.00 0.00 0.00 2.29
3978 9274 3.936453 TGTTGTACCGGAGATATTTGCAC 59.064 43.478 9.46 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.