Multiple sequence alignment - TraesCS2B01G268100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G268100 chr2B 100.000 4344 0 0 650 4993 361426445 361422102 0.000000e+00 8022
1 TraesCS2B01G268100 chr2B 100.000 233 0 0 1 233 361427094 361426862 1.060000e-116 431
2 TraesCS2B01G268100 chr2B 100.000 122 0 0 5194 5315 361421901 361421780 5.360000e-55 226
3 TraesCS2B01G268100 chr2B 83.908 174 25 3 3509 3680 541009374 541009546 4.260000e-36 163
4 TraesCS2B01G268100 chr2A 94.374 2453 80 20 686 3118 428907893 428910307 0.000000e+00 3712
5 TraesCS2B01G268100 chr2A 94.553 1487 50 9 3191 4663 428910652 428912121 0.000000e+00 2268
6 TraesCS2B01G268100 chr2A 94.583 240 6 1 1 233 428907595 428907834 1.090000e-96 364
7 TraesCS2B01G268100 chr2A 87.048 332 18 8 4679 4993 428914270 428914593 8.470000e-93 351
8 TraesCS2B01G268100 chr2D 95.077 2011 57 18 690 2682 311715405 311717391 0.000000e+00 3127
9 TraesCS2B01G268100 chr2D 93.769 1958 60 15 2709 4664 311717387 311719284 0.000000e+00 2883
10 TraesCS2B01G268100 chr2D 100.000 233 0 0 1 233 311714678 311714910 1.060000e-116 431
11 TraesCS2B01G268100 chr2D 88.372 344 29 9 4656 4993 311822461 311822799 2.310000e-108 403
12 TraesCS2B01G268100 chr2D 84.571 175 22 5 3509 3680 459775576 459775748 9.150000e-38 169
13 TraesCS2B01G268100 chr5D 92.086 139 11 0 2747 2885 477985762 477985900 4.200000e-46 196
14 TraesCS2B01G268100 chr5D 90.526 95 9 0 2385 2479 477985392 477985486 5.590000e-25 126
15 TraesCS2B01G268100 chr5B 92.086 139 11 0 2747 2885 585474920 585475058 4.200000e-46 196
16 TraesCS2B01G268100 chr5B 90.526 95 9 0 2385 2479 585474515 585474609 5.590000e-25 126
17 TraesCS2B01G268100 chr5A 91.367 139 12 0 2747 2885 597256184 597256322 1.950000e-44 191
18 TraesCS2B01G268100 chr5A 89.474 95 10 0 2385 2479 597255805 597255899 2.600000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G268100 chr2B 361421780 361427094 5314 True 2893.00 8022 100.0000 1 5315 3 chr2B.!!$R1 5314
1 TraesCS2B01G268100 chr2A 428907595 428914593 6998 False 1673.75 3712 92.6395 1 4993 4 chr2A.!!$F1 4992
2 TraesCS2B01G268100 chr2D 311714678 311719284 4606 False 2147.00 3127 96.2820 1 4664 3 chr2D.!!$F3 4663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
674 682 0.032316 AGCTGAGGCATGAGGAGAGA 60.032 55.000 0.00 0.0 41.70 3.10 F
1007 1061 0.323542 ACCGATCGACCTCCAACTCT 60.324 55.000 18.66 0.0 0.00 3.24 F
1411 1468 1.338337 CGACCGAGATCAGCCATTAGT 59.662 52.381 0.00 0.0 0.00 2.24 F
2897 2974 1.009389 GGTACGTCACAGCTCACAGC 61.009 60.000 0.00 0.0 42.84 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2206 2263 2.554893 GCGAGGGACATTGGTTAACAAA 59.445 45.455 8.10 2.29 43.46 2.83 R
2707 2784 0.317479 ACTCTTCCTTCCCGTTCACG 59.683 55.000 0.00 0.00 39.44 4.35 R
3193 3546 0.613260 AGGACCATACACACACGCAT 59.387 50.000 0.00 0.00 0.00 4.73 R
4502 4869 0.107508 CGTGGGTCAGGCTGATGAAT 60.108 55.000 21.84 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
668 676 1.706995 ATCCCCAGCTGAGGCATGAG 61.707 60.000 17.39 1.96 41.70 2.90
669 677 2.192443 CCCAGCTGAGGCATGAGG 59.808 66.667 17.39 0.38 41.70 3.86
670 678 2.372890 CCCAGCTGAGGCATGAGGA 61.373 63.158 17.39 0.00 41.70 3.71
671 679 1.146485 CCAGCTGAGGCATGAGGAG 59.854 63.158 17.39 0.00 41.70 3.69
672 680 1.335882 CCAGCTGAGGCATGAGGAGA 61.336 60.000 17.39 0.00 41.70 3.71
673 681 0.105224 CAGCTGAGGCATGAGGAGAG 59.895 60.000 8.42 0.00 41.70 3.20
674 682 0.032316 AGCTGAGGCATGAGGAGAGA 60.032 55.000 0.00 0.00 41.70 3.10
675 683 0.390124 GCTGAGGCATGAGGAGAGAG 59.610 60.000 0.00 0.00 38.54 3.20
676 684 1.779221 CTGAGGCATGAGGAGAGAGT 58.221 55.000 0.00 0.00 0.00 3.24
677 685 1.409790 CTGAGGCATGAGGAGAGAGTG 59.590 57.143 0.00 0.00 0.00 3.51
678 686 1.272928 TGAGGCATGAGGAGAGAGTGT 60.273 52.381 0.00 0.00 0.00 3.55
679 687 1.136695 GAGGCATGAGGAGAGAGTGTG 59.863 57.143 0.00 0.00 0.00 3.82
680 688 0.901124 GGCATGAGGAGAGAGTGTGT 59.099 55.000 0.00 0.00 0.00 3.72
681 689 1.405256 GGCATGAGGAGAGAGTGTGTG 60.405 57.143 0.00 0.00 0.00 3.82
682 690 1.547820 GCATGAGGAGAGAGTGTGTGA 59.452 52.381 0.00 0.00 0.00 3.58
683 691 2.417107 GCATGAGGAGAGAGTGTGTGAG 60.417 54.545 0.00 0.00 0.00 3.51
684 692 2.959465 TGAGGAGAGAGTGTGTGAGA 57.041 50.000 0.00 0.00 0.00 3.27
685 693 2.789213 TGAGGAGAGAGTGTGTGAGAG 58.211 52.381 0.00 0.00 0.00 3.20
686 694 2.373502 TGAGGAGAGAGTGTGTGAGAGA 59.626 50.000 0.00 0.00 0.00 3.10
692 738 3.327757 AGAGAGTGTGTGAGAGAGAGAGT 59.672 47.826 0.00 0.00 0.00 3.24
716 763 6.017440 GTGTGTGTGTTATTGTATTGGTCTGT 60.017 38.462 0.00 0.00 0.00 3.41
769 816 5.630415 TTTTGGGGTCACATATAGAGGAG 57.370 43.478 0.00 0.00 0.00 3.69
770 817 4.552883 TTGGGGTCACATATAGAGGAGA 57.447 45.455 0.00 0.00 0.00 3.71
771 818 4.119556 TGGGGTCACATATAGAGGAGAG 57.880 50.000 0.00 0.00 0.00 3.20
772 819 2.829120 GGGGTCACATATAGAGGAGAGC 59.171 54.545 0.00 0.00 0.00 4.09
773 820 3.501349 GGGTCACATATAGAGGAGAGCA 58.499 50.000 1.51 0.00 0.00 4.26
774 821 3.509575 GGGTCACATATAGAGGAGAGCAG 59.490 52.174 1.51 0.00 0.00 4.24
775 822 3.056891 GGTCACATATAGAGGAGAGCAGC 60.057 52.174 0.00 0.00 0.00 5.25
776 823 3.826157 GTCACATATAGAGGAGAGCAGCT 59.174 47.826 0.00 0.00 0.00 4.24
854 901 2.945668 AGAAACACACTTGCTCACTTCC 59.054 45.455 0.00 0.00 0.00 3.46
868 916 2.909006 TCACTTCCTCTTGCCTTCATCT 59.091 45.455 0.00 0.00 0.00 2.90
896 950 3.408183 TCATCTTCTCTCCCTCCTCCTA 58.592 50.000 0.00 0.00 0.00 2.94
901 955 1.854280 TCTCTCCCTCCTCCTACTTCC 59.146 57.143 0.00 0.00 0.00 3.46
918 972 1.225704 CCTCTTGCCCCATCTCCAC 59.774 63.158 0.00 0.00 0.00 4.02
954 1008 2.659428 GAGGGCATTGACCATTAGCTT 58.341 47.619 12.11 0.00 29.21 3.74
1007 1061 0.323542 ACCGATCGACCTCCAACTCT 60.324 55.000 18.66 0.00 0.00 3.24
1136 1190 3.011635 GCTGGGCTTCTCGCTCTCA 62.012 63.158 0.00 0.00 40.82 3.27
1316 1373 2.214347 CTCTGCATCATGGAAGCTCTG 58.786 52.381 0.00 0.00 0.00 3.35
1411 1468 1.338337 CGACCGAGATCAGCCATTAGT 59.662 52.381 0.00 0.00 0.00 2.24
1984 2041 2.951101 CGTCACCAGGTACACCCCC 61.951 68.421 0.00 0.00 36.42 5.40
2021 2078 3.738899 GCACGTGATTAATTAGTCGGGGA 60.739 47.826 22.23 0.00 0.00 4.81
2206 2263 7.355101 TCTCTATCATTAGTGTCTAACCCAGT 58.645 38.462 0.00 0.00 0.00 4.00
2224 2281 3.895041 CCAGTTTGTTAACCAATGTCCCT 59.105 43.478 2.48 0.00 34.71 4.20
2533 2608 9.965902 ACCTTTTCTCAGTTTAATGATCATAGT 57.034 29.630 9.04 0.00 0.00 2.12
2707 2784 6.005583 TCAAATCTTTGTCTTGTGATCTGC 57.994 37.500 2.82 0.00 39.18 4.26
2729 2806 1.343465 TGAACGGGAAGGAAGAGTGAC 59.657 52.381 0.00 0.00 0.00 3.67
2731 2808 1.258676 ACGGGAAGGAAGAGTGACTC 58.741 55.000 3.98 3.98 0.00 3.36
2735 2812 2.438411 GGAAGGAAGAGTGACTCGAGA 58.562 52.381 21.68 0.00 35.36 4.04
2811 2888 4.572571 GTGACCCGGCACCACCAA 62.573 66.667 0.00 0.00 39.03 3.67
2896 2973 3.108521 GGTACGTCACAGCTCACAG 57.891 57.895 0.00 0.00 0.00 3.66
2897 2974 1.009389 GGTACGTCACAGCTCACAGC 61.009 60.000 0.00 0.00 42.84 4.40
3121 3202 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
3122 3203 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
3123 3204 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
3124 3205 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
3125 3206 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3126 3207 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3127 3208 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3128 3209 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3129 3210 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3130 3211 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3131 3212 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3132 3213 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3133 3214 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3134 3215 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3135 3216 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3136 3217 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3137 3218 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3138 3219 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3139 3220 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3140 3221 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3141 3222 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3142 3223 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3143 3224 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3144 3225 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3145 3226 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3146 3227 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3147 3228 6.101881 TCTCTCTCTCTCTCTCTCTCTCTCTA 59.898 46.154 0.00 0.00 0.00 2.43
3148 3229 6.065374 TCTCTCTCTCTCTCTCTCTCTCTAC 58.935 48.000 0.00 0.00 0.00 2.59
3149 3230 5.766590 TCTCTCTCTCTCTCTCTCTCTACA 58.233 45.833 0.00 0.00 0.00 2.74
3150 3231 5.594725 TCTCTCTCTCTCTCTCTCTCTACAC 59.405 48.000 0.00 0.00 0.00 2.90
3176 3257 8.415553 CACACAAATATCTCATTCTCTCTCTCT 58.584 37.037 0.00 0.00 0.00 3.10
3177 3258 8.632679 ACACAAATATCTCATTCTCTCTCTCTC 58.367 37.037 0.00 0.00 0.00 3.20
3178 3259 8.853126 CACAAATATCTCATTCTCTCTCTCTCT 58.147 37.037 0.00 0.00 0.00 3.10
3180 3261 9.293404 CAAATATCTCATTCTCTCTCTCTCTCT 57.707 37.037 0.00 0.00 0.00 3.10
3181 3262 9.512588 AAATATCTCATTCTCTCTCTCTCTCTC 57.487 37.037 0.00 0.00 0.00 3.20
3182 3263 5.296151 TCTCATTCTCTCTCTCTCTCTCC 57.704 47.826 0.00 0.00 0.00 3.71
3183 3264 4.971282 TCTCATTCTCTCTCTCTCTCTCCT 59.029 45.833 0.00 0.00 0.00 3.69
3184 3265 5.429762 TCTCATTCTCTCTCTCTCTCTCCTT 59.570 44.000 0.00 0.00 0.00 3.36
3185 3266 5.684704 TCATTCTCTCTCTCTCTCTCCTTC 58.315 45.833 0.00 0.00 0.00 3.46
3186 3267 4.503714 TTCTCTCTCTCTCTCTCCTTCC 57.496 50.000 0.00 0.00 0.00 3.46
3187 3268 3.459828 TCTCTCTCTCTCTCTCCTTCCA 58.540 50.000 0.00 0.00 0.00 3.53
3193 3546 4.228438 TCTCTCTCTCTCCTTCCACATGTA 59.772 45.833 0.00 0.00 0.00 2.29
3196 3549 3.386078 TCTCTCTCCTTCCACATGTATGC 59.614 47.826 0.00 0.00 0.00 3.14
3281 3636 3.746045 TTCCTAGTTTTCGCACTGTCT 57.254 42.857 0.00 0.00 0.00 3.41
4151 4506 2.736719 CGCTTGAATGATCACTCGGTCT 60.737 50.000 0.00 0.00 34.61 3.85
4207 4562 2.979813 GACAATGGCGTGCAGTTTTTAG 59.020 45.455 0.00 0.00 0.00 1.85
4242 4597 4.550255 GCGACGTGATTAAGGATTAGCAAC 60.550 45.833 0.00 0.00 0.00 4.17
4312 4667 5.046735 AGCGGTACTATCGAGATTACTCCTA 60.047 44.000 7.39 0.00 39.76 2.94
4327 4694 6.782298 TTACTCCTACGATGTAAGATCGAG 57.218 41.667 12.66 6.10 43.59 4.04
4466 4833 5.643777 GCTAGCTCCACTAATTGAAGTTTCA 59.356 40.000 7.70 0.00 34.92 2.69
4468 4835 7.148171 GCTAGCTCCACTAATTGAAGTTTCATT 60.148 37.037 7.70 0.00 37.00 2.57
4487 4854 5.948588 TCATTGTTGGTAACCATTTCATCG 58.051 37.500 0.00 0.00 31.53 3.84
4502 4869 3.836365 TCATCGGATGTGGCATCTTTA 57.164 42.857 17.01 0.00 0.00 1.85
4533 4900 1.450211 ACCCACGGTCTCACCTTTG 59.550 57.895 0.00 0.00 35.66 2.77
4543 4910 4.218417 CGGTCTCACCTTTGGAAAATTGAT 59.782 41.667 0.00 0.00 35.66 2.57
4554 4921 7.330208 CCTTTGGAAAATTGATCAAGTCATCAC 59.670 37.037 14.54 8.19 36.54 3.06
4570 4937 0.678684 TCACGGACGCCTCACTATCA 60.679 55.000 0.00 0.00 0.00 2.15
4674 5053 5.627367 TGTAAAATCTGTTGCGTGCAAATAC 59.373 36.000 9.13 0.00 37.70 1.89
4715 7215 7.763528 CAGATAGTTAGCTGAATAATAGGGCTG 59.236 40.741 0.00 0.00 41.99 4.85
4747 7247 4.082081 TGCATGTCCACATCCAATTCTTTC 60.082 41.667 0.00 0.00 33.61 2.62
4748 7248 4.159135 GCATGTCCACATCCAATTCTTTCT 59.841 41.667 0.00 0.00 33.61 2.52
4749 7249 5.678107 GCATGTCCACATCCAATTCTTTCTC 60.678 44.000 0.00 0.00 33.61 2.87
4750 7250 5.246981 TGTCCACATCCAATTCTTTCTCT 57.753 39.130 0.00 0.00 0.00 3.10
4819 7325 1.137479 AGAACGTTGACGGAACCTGAA 59.863 47.619 5.00 0.00 44.95 3.02
4821 7327 1.792006 ACGTTGACGGAACCTGAATC 58.208 50.000 8.52 0.00 44.95 2.52
4823 7329 1.076332 GTTGACGGAACCTGAATCGG 58.924 55.000 0.00 0.00 0.00 4.18
4854 7361 6.544197 TCTGATATAGGATTCTAAGCTAGGCG 59.456 42.308 0.00 0.00 0.00 5.52
4863 7370 2.156098 CTAAGCTAGGCGTCTAGGAGG 58.844 57.143 24.68 1.22 42.41 4.30
4885 7392 2.928801 TGGTAACATGCACAGACACT 57.071 45.000 0.00 0.00 46.17 3.55
4892 7399 4.494350 ACATGCACAGACACTTGATTTC 57.506 40.909 0.00 0.00 0.00 2.17
4930 7437 3.003173 AGCCAGCTAGCCGGTGAA 61.003 61.111 18.27 0.00 43.75 3.18
4984 7501 1.691163 CCTTTCCCTCTCTCCCCTCTC 60.691 61.905 0.00 0.00 0.00 3.20
5217 7734 1.757949 GCTCTGGCCTCTATTCCCC 59.242 63.158 3.32 0.00 0.00 4.81
5218 7735 2.053618 CTCTGGCCTCTATTCCCCG 58.946 63.158 3.32 0.00 0.00 5.73
5219 7736 1.459539 TCTGGCCTCTATTCCCCGG 60.460 63.158 3.32 0.00 0.00 5.73
5220 7737 3.168528 TGGCCTCTATTCCCCGGC 61.169 66.667 3.32 0.00 41.75 6.13
5221 7738 2.849646 GGCCTCTATTCCCCGGCT 60.850 66.667 0.00 0.00 42.13 5.52
5222 7739 2.427753 GCCTCTATTCCCCGGCTG 59.572 66.667 0.00 0.00 39.42 4.85
5223 7740 2.444256 GCCTCTATTCCCCGGCTGT 61.444 63.158 0.00 0.00 39.42 4.40
5224 7741 1.447643 CCTCTATTCCCCGGCTGTG 59.552 63.158 0.00 0.00 0.00 3.66
5225 7742 1.447643 CTCTATTCCCCGGCTGTGG 59.552 63.158 0.00 0.00 0.00 4.17
5226 7743 1.306654 TCTATTCCCCGGCTGTGGT 60.307 57.895 0.00 0.00 0.00 4.16
5227 7744 1.153168 CTATTCCCCGGCTGTGGTG 60.153 63.158 0.00 0.00 0.00 4.17
5228 7745 1.910580 CTATTCCCCGGCTGTGGTGT 61.911 60.000 0.00 0.00 0.00 4.16
5229 7746 1.906105 TATTCCCCGGCTGTGGTGTC 61.906 60.000 0.00 0.00 0.00 3.67
5233 7750 4.988598 CCGGCTGTGGTGTCGCTT 62.989 66.667 0.00 0.00 0.00 4.68
5234 7751 3.414700 CGGCTGTGGTGTCGCTTC 61.415 66.667 0.00 0.00 0.00 3.86
5235 7752 2.031163 GGCTGTGGTGTCGCTTCT 59.969 61.111 0.00 0.00 0.00 2.85
5236 7753 2.029844 GGCTGTGGTGTCGCTTCTC 61.030 63.158 0.00 0.00 0.00 2.87
5237 7754 1.300931 GCTGTGGTGTCGCTTCTCA 60.301 57.895 0.00 0.00 0.00 3.27
5238 7755 1.560860 GCTGTGGTGTCGCTTCTCAC 61.561 60.000 0.00 0.00 0.00 3.51
5239 7756 1.278172 CTGTGGTGTCGCTTCTCACG 61.278 60.000 0.00 0.00 35.67 4.35
5240 7757 1.299926 GTGGTGTCGCTTCTCACGT 60.300 57.895 0.00 0.00 35.67 4.49
5241 7758 1.007734 TGGTGTCGCTTCTCACGTC 60.008 57.895 0.00 0.00 35.67 4.34
5242 7759 1.286260 GGTGTCGCTTCTCACGTCT 59.714 57.895 0.00 0.00 35.67 4.18
5243 7760 0.729816 GGTGTCGCTTCTCACGTCTC 60.730 60.000 0.00 0.00 35.67 3.36
5244 7761 0.729816 GTGTCGCTTCTCACGTCTCC 60.730 60.000 0.00 0.00 0.00 3.71
5245 7762 0.889638 TGTCGCTTCTCACGTCTCCT 60.890 55.000 0.00 0.00 0.00 3.69
5246 7763 0.179184 GTCGCTTCTCACGTCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
5247 7764 0.321741 TCGCTTCTCACGTCTCCTCT 60.322 55.000 0.00 0.00 0.00 3.69
5248 7765 0.179176 CGCTTCTCACGTCTCCTCTG 60.179 60.000 0.00 0.00 0.00 3.35
5249 7766 0.457681 GCTTCTCACGTCTCCTCTGC 60.458 60.000 0.00 0.00 0.00 4.26
5250 7767 1.173043 CTTCTCACGTCTCCTCTGCT 58.827 55.000 0.00 0.00 0.00 4.24
5251 7768 1.132262 CTTCTCACGTCTCCTCTGCTC 59.868 57.143 0.00 0.00 0.00 4.26
5252 7769 0.326595 TCTCACGTCTCCTCTGCTCT 59.673 55.000 0.00 0.00 0.00 4.09
5253 7770 1.173043 CTCACGTCTCCTCTGCTCTT 58.827 55.000 0.00 0.00 0.00 2.85
5254 7771 1.132262 CTCACGTCTCCTCTGCTCTTC 59.868 57.143 0.00 0.00 0.00 2.87
5255 7772 1.173043 CACGTCTCCTCTGCTCTTCT 58.827 55.000 0.00 0.00 0.00 2.85
5256 7773 1.132262 CACGTCTCCTCTGCTCTTCTC 59.868 57.143 0.00 0.00 0.00 2.87
5257 7774 0.738389 CGTCTCCTCTGCTCTTCTCC 59.262 60.000 0.00 0.00 0.00 3.71
5258 7775 1.681780 CGTCTCCTCTGCTCTTCTCCT 60.682 57.143 0.00 0.00 0.00 3.69
5259 7776 2.024414 GTCTCCTCTGCTCTTCTCCTC 58.976 57.143 0.00 0.00 0.00 3.71
5260 7777 1.024271 CTCCTCTGCTCTTCTCCTCG 58.976 60.000 0.00 0.00 0.00 4.63
5261 7778 1.034838 TCCTCTGCTCTTCTCCTCGC 61.035 60.000 0.00 0.00 0.00 5.03
5262 7779 1.437160 CTCTGCTCTTCTCCTCGCC 59.563 63.158 0.00 0.00 0.00 5.54
5263 7780 1.304464 TCTGCTCTTCTCCTCGCCA 60.304 57.895 0.00 0.00 0.00 5.69
5264 7781 0.685785 TCTGCTCTTCTCCTCGCCAT 60.686 55.000 0.00 0.00 0.00 4.40
5265 7782 0.177604 CTGCTCTTCTCCTCGCCATT 59.822 55.000 0.00 0.00 0.00 3.16
5266 7783 0.176680 TGCTCTTCTCCTCGCCATTC 59.823 55.000 0.00 0.00 0.00 2.67
5267 7784 0.531753 GCTCTTCTCCTCGCCATTCC 60.532 60.000 0.00 0.00 0.00 3.01
5268 7785 0.249238 CTCTTCTCCTCGCCATTCCG 60.249 60.000 0.00 0.00 0.00 4.30
5269 7786 1.227380 CTTCTCCTCGCCATTCCGG 60.227 63.158 0.00 0.00 38.11 5.14
5270 7787 2.650813 CTTCTCCTCGCCATTCCGGG 62.651 65.000 0.00 0.00 34.06 5.73
5271 7788 3.470888 CTCCTCGCCATTCCGGGT 61.471 66.667 0.00 0.00 34.06 5.28
5272 7789 3.740128 CTCCTCGCCATTCCGGGTG 62.740 68.421 0.00 0.41 39.85 4.61
5273 7790 4.856801 CCTCGCCATTCCGGGTGG 62.857 72.222 19.01 19.01 38.97 4.61
5291 7808 2.741985 CGTGCCATCGCTGTCCAA 60.742 61.111 0.00 0.00 35.36 3.53
5292 7809 2.108514 CGTGCCATCGCTGTCCAAT 61.109 57.895 0.00 0.00 35.36 3.16
5293 7810 1.723870 GTGCCATCGCTGTCCAATC 59.276 57.895 0.00 0.00 35.36 2.67
5294 7811 1.815003 TGCCATCGCTGTCCAATCG 60.815 57.895 0.00 0.00 35.36 3.34
5295 7812 3.017323 CCATCGCTGTCCAATCGC 58.983 61.111 0.00 0.00 0.00 4.58
5296 7813 1.522355 CCATCGCTGTCCAATCGCT 60.522 57.895 0.00 0.00 0.00 4.93
5297 7814 1.091771 CCATCGCTGTCCAATCGCTT 61.092 55.000 0.00 0.00 0.00 4.68
5298 7815 0.302890 CATCGCTGTCCAATCGCTTC 59.697 55.000 0.00 0.00 0.00 3.86
5299 7816 0.176680 ATCGCTGTCCAATCGCTTCT 59.823 50.000 0.00 0.00 0.00 2.85
5300 7817 0.815095 TCGCTGTCCAATCGCTTCTA 59.185 50.000 0.00 0.00 0.00 2.10
5301 7818 1.202302 TCGCTGTCCAATCGCTTCTAG 60.202 52.381 0.00 0.00 0.00 2.43
5302 7819 1.576356 GCTGTCCAATCGCTTCTAGG 58.424 55.000 0.00 0.00 0.00 3.02
5303 7820 1.576356 CTGTCCAATCGCTTCTAGGC 58.424 55.000 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
654 662 0.105224 CTCTCCTCATGCCTCAGCTG 59.895 60.000 7.63 7.63 40.80 4.24
660 668 1.193323 CACACTCTCTCCTCATGCCT 58.807 55.000 0.00 0.00 0.00 4.75
668 676 3.009723 CTCTCTCTCACACACTCTCTCC 58.990 54.545 0.00 0.00 0.00 3.71
669 677 3.935203 CTCTCTCTCTCACACACTCTCTC 59.065 52.174 0.00 0.00 0.00 3.20
670 678 3.327757 ACTCTCTCTCTCACACACTCTCT 59.672 47.826 0.00 0.00 0.00 3.10
671 679 3.436704 CACTCTCTCTCTCACACACTCTC 59.563 52.174 0.00 0.00 0.00 3.20
672 680 3.181445 ACACTCTCTCTCTCACACACTCT 60.181 47.826 0.00 0.00 0.00 3.24
673 681 3.058293 CACACTCTCTCTCTCACACACTC 60.058 52.174 0.00 0.00 0.00 3.51
674 682 2.884012 CACACTCTCTCTCTCACACACT 59.116 50.000 0.00 0.00 0.00 3.55
675 683 2.621055 ACACACTCTCTCTCTCACACAC 59.379 50.000 0.00 0.00 0.00 3.82
676 684 2.620585 CACACACTCTCTCTCTCACACA 59.379 50.000 0.00 0.00 0.00 3.72
677 685 2.621055 ACACACACTCTCTCTCTCACAC 59.379 50.000 0.00 0.00 0.00 3.82
678 686 2.620585 CACACACACTCTCTCTCTCACA 59.379 50.000 0.00 0.00 0.00 3.58
679 687 2.621055 ACACACACACTCTCTCTCTCAC 59.379 50.000 0.00 0.00 0.00 3.51
680 688 2.937519 ACACACACACTCTCTCTCTCA 58.062 47.619 0.00 0.00 0.00 3.27
681 689 5.637006 ATAACACACACACTCTCTCTCTC 57.363 43.478 0.00 0.00 0.00 3.20
682 690 5.303078 ACAATAACACACACACTCTCTCTCT 59.697 40.000 0.00 0.00 0.00 3.10
683 691 5.533482 ACAATAACACACACACTCTCTCTC 58.467 41.667 0.00 0.00 0.00 3.20
684 692 5.537300 ACAATAACACACACACTCTCTCT 57.463 39.130 0.00 0.00 0.00 3.10
685 693 7.148573 CCAATACAATAACACACACACTCTCTC 60.149 40.741 0.00 0.00 0.00 3.20
686 694 6.650807 CCAATACAATAACACACACACTCTCT 59.349 38.462 0.00 0.00 0.00 3.10
692 738 6.058833 ACAGACCAATACAATAACACACACA 58.941 36.000 0.00 0.00 0.00 3.72
716 763 7.517734 GCTCTTAATGGCGTTTATTATGACGAA 60.518 37.037 0.00 0.00 41.53 3.85
751 798 2.829120 GCTCTCCTCTATATGTGACCCC 59.171 54.545 0.00 0.00 0.00 4.95
854 901 5.183969 TGAAGATGAAGATGAAGGCAAGAG 58.816 41.667 0.00 0.00 0.00 2.85
868 916 4.653341 GGAGGGAGAGAAGATGAAGATGAA 59.347 45.833 0.00 0.00 0.00 2.57
896 950 0.915364 GAGATGGGGCAAGAGGAAGT 59.085 55.000 0.00 0.00 0.00 3.01
901 955 0.622665 AAGTGGAGATGGGGCAAGAG 59.377 55.000 0.00 0.00 0.00 2.85
918 972 1.660560 CCTCCCCGCATTGCTTGAAG 61.661 60.000 7.12 0.00 0.00 3.02
954 1008 6.611236 TGGTGAACAATGGATAGAGATAGACA 59.389 38.462 0.00 0.00 0.00 3.41
1007 1061 7.281324 AGAGATAGATCGACGAGAAAGAAGAAA 59.719 37.037 3.01 0.00 0.00 2.52
1136 1190 1.959226 GTGTTCGTCCATGTGCGGT 60.959 57.895 6.36 0.00 0.00 5.68
1172 1226 1.500783 ATAGGCCCTGGTGCTGTTGT 61.501 55.000 0.00 0.00 0.00 3.32
1250 1307 2.094957 GGAGGCTAGCTGCGAATAGTAG 60.095 54.545 15.72 0.00 44.05 2.57
1316 1373 2.563086 CTTGTTGATCGGTTCGGCGC 62.563 60.000 0.00 0.00 0.00 6.53
1341 1398 0.730494 GCGCTGAAGTACGTACCGTT 60.730 55.000 21.80 10.86 41.54 4.44
1357 1414 2.443887 TAGGTGTATATTTCCGGCGC 57.556 50.000 0.00 0.00 0.00 6.53
1389 1446 1.043816 AATGGCTGATCTCGGTCGAT 58.956 50.000 0.00 0.00 0.00 3.59
1411 1468 1.879380 CACGCCATGAACTCCAAGAAA 59.121 47.619 0.00 0.00 0.00 2.52
1453 1510 1.003233 AAAGTCCTCCAGCTTCGGC 60.003 57.895 0.00 0.00 42.17 5.54
1747 1804 2.866085 GAAGATGCTGCTGCCGGTCT 62.866 60.000 13.47 10.65 38.71 3.85
1994 2051 5.234329 CCGACTAATTAATCACGTGCTCATT 59.766 40.000 11.67 8.43 0.00 2.57
2021 2078 6.071278 ACGTTAATCTCCTGCTCTACTTCTTT 60.071 38.462 0.00 0.00 0.00 2.52
2196 2253 6.130569 ACATTGGTTAACAAACTGGGTTAGA 58.869 36.000 8.10 0.00 43.46 2.10
2203 2260 4.320202 CGAGGGACATTGGTTAACAAACTG 60.320 45.833 8.10 5.89 43.46 3.16
2206 2263 2.554893 GCGAGGGACATTGGTTAACAAA 59.445 45.455 8.10 2.29 43.46 2.83
2224 2281 3.610040 AGTTAGTTCATCACCATGCGA 57.390 42.857 0.00 0.00 0.00 5.10
2371 2431 4.302559 ACCCTCCTGTAAAATGGAGTTC 57.697 45.455 8.04 0.00 46.17 3.01
2372 2432 5.491078 TCATACCCTCCTGTAAAATGGAGTT 59.509 40.000 8.04 0.00 46.17 3.01
2373 2433 5.036916 TCATACCCTCCTGTAAAATGGAGT 58.963 41.667 8.04 0.00 46.17 3.85
2374 2434 5.104527 TGTCATACCCTCCTGTAAAATGGAG 60.105 44.000 0.00 0.00 46.91 3.86
2538 2613 7.945664 ACCAGGAAAACACCATGTTAGTAATAA 59.054 33.333 0.00 0.00 40.14 1.40
2541 2616 5.533154 CACCAGGAAAACACCATGTTAGTAA 59.467 40.000 0.00 0.00 40.14 2.24
2543 2618 3.888930 CACCAGGAAAACACCATGTTAGT 59.111 43.478 0.00 0.00 40.14 2.24
2637 2712 5.121768 CCACTTCCATTAACGTTACCTTCTG 59.878 44.000 7.70 1.37 0.00 3.02
2696 2773 0.439985 CCGTTCACGCAGATCACAAG 59.560 55.000 0.00 0.00 38.18 3.16
2698 2775 1.374125 CCCGTTCACGCAGATCACA 60.374 57.895 0.00 0.00 38.18 3.58
2704 2781 1.291877 CTTCCTTCCCGTTCACGCAG 61.292 60.000 0.00 0.00 38.18 5.18
2707 2784 0.317479 ACTCTTCCTTCCCGTTCACG 59.683 55.000 0.00 0.00 39.44 4.35
2729 2806 4.862092 ATGCACGCGCCTCTCGAG 62.862 66.667 5.73 5.93 43.76 4.04
2891 2968 3.550820 GATCTAGAGAGAGTGGCTGTGA 58.449 50.000 0.00 0.00 34.35 3.58
2892 2969 2.622942 GGATCTAGAGAGAGTGGCTGTG 59.377 54.545 0.00 0.00 34.35 3.66
2893 2970 2.513738 AGGATCTAGAGAGAGTGGCTGT 59.486 50.000 0.00 0.00 34.35 4.40
2894 2971 3.228188 AGGATCTAGAGAGAGTGGCTG 57.772 52.381 0.00 0.00 34.35 4.85
2895 2972 3.971468 AAGGATCTAGAGAGAGTGGCT 57.029 47.619 0.00 0.00 34.35 4.75
2896 2973 4.980573 TCTAAGGATCTAGAGAGAGTGGC 58.019 47.826 0.00 0.00 34.35 5.01
2897 2974 6.601332 AGTTCTAAGGATCTAGAGAGAGTGG 58.399 44.000 0.00 0.00 34.35 4.00
3046 3127 4.202567 ACATTCTAACTTTGGCAGGGAGAA 60.203 41.667 2.26 6.61 33.88 2.87
3121 3202 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3122 3203 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3123 3204 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3124 3205 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
3125 3206 5.830457 TGTAGAGAGAGAGAGAGAGAGAGAG 59.170 48.000 0.00 0.00 0.00 3.20
3126 3207 5.594725 GTGTAGAGAGAGAGAGAGAGAGAGA 59.405 48.000 0.00 0.00 0.00 3.10
3127 3208 5.360999 TGTGTAGAGAGAGAGAGAGAGAGAG 59.639 48.000 0.00 0.00 0.00 3.20
3128 3209 5.127194 GTGTGTAGAGAGAGAGAGAGAGAGA 59.873 48.000 0.00 0.00 0.00 3.10
3129 3210 5.105351 TGTGTGTAGAGAGAGAGAGAGAGAG 60.105 48.000 0.00 0.00 0.00 3.20
3130 3211 4.775253 TGTGTGTAGAGAGAGAGAGAGAGA 59.225 45.833 0.00 0.00 0.00 3.10
3131 3212 4.870426 GTGTGTGTAGAGAGAGAGAGAGAG 59.130 50.000 0.00 0.00 0.00 3.20
3132 3213 4.284746 TGTGTGTGTAGAGAGAGAGAGAGA 59.715 45.833 0.00 0.00 0.00 3.10
3133 3214 4.574892 TGTGTGTGTAGAGAGAGAGAGAG 58.425 47.826 0.00 0.00 0.00 3.20
3134 3215 4.625607 TGTGTGTGTAGAGAGAGAGAGA 57.374 45.455 0.00 0.00 0.00 3.10
3135 3216 5.697473 TTTGTGTGTGTAGAGAGAGAGAG 57.303 43.478 0.00 0.00 0.00 3.20
3136 3217 7.831690 AGATATTTGTGTGTGTAGAGAGAGAGA 59.168 37.037 0.00 0.00 0.00 3.10
3137 3218 7.995289 AGATATTTGTGTGTGTAGAGAGAGAG 58.005 38.462 0.00 0.00 0.00 3.20
3138 3219 7.611855 TGAGATATTTGTGTGTGTAGAGAGAGA 59.388 37.037 0.00 0.00 0.00 3.10
3139 3220 7.766283 TGAGATATTTGTGTGTGTAGAGAGAG 58.234 38.462 0.00 0.00 0.00 3.20
3140 3221 7.703058 TGAGATATTTGTGTGTGTAGAGAGA 57.297 36.000 0.00 0.00 0.00 3.10
3141 3222 8.939201 AATGAGATATTTGTGTGTGTAGAGAG 57.061 34.615 0.00 0.00 0.00 3.20
3142 3223 8.753133 AGAATGAGATATTTGTGTGTGTAGAGA 58.247 33.333 0.00 0.00 0.00 3.10
3143 3224 8.939201 AGAATGAGATATTTGTGTGTGTAGAG 57.061 34.615 0.00 0.00 0.00 2.43
3144 3225 8.753133 AGAGAATGAGATATTTGTGTGTGTAGA 58.247 33.333 0.00 0.00 0.00 2.59
3145 3226 8.939201 AGAGAATGAGATATTTGTGTGTGTAG 57.061 34.615 0.00 0.00 0.00 2.74
3146 3227 8.753133 AGAGAGAATGAGATATTTGTGTGTGTA 58.247 33.333 0.00 0.00 0.00 2.90
3147 3228 7.619050 AGAGAGAATGAGATATTTGTGTGTGT 58.381 34.615 0.00 0.00 0.00 3.72
3148 3229 7.980662 AGAGAGAGAATGAGATATTTGTGTGTG 59.019 37.037 0.00 0.00 0.00 3.82
3149 3230 8.076910 AGAGAGAGAATGAGATATTTGTGTGT 57.923 34.615 0.00 0.00 0.00 3.72
3150 3231 8.415553 AGAGAGAGAGAATGAGATATTTGTGTG 58.584 37.037 0.00 0.00 0.00 3.82
3176 3257 2.101415 CGCATACATGTGGAAGGAGAGA 59.899 50.000 9.11 0.00 34.78 3.10
3177 3258 2.159043 ACGCATACATGTGGAAGGAGAG 60.159 50.000 9.11 0.00 42.35 3.20
3178 3259 1.831106 ACGCATACATGTGGAAGGAGA 59.169 47.619 9.11 0.00 42.35 3.71
3180 3261 1.277842 ACACGCATACATGTGGAAGGA 59.722 47.619 9.11 0.00 42.35 3.36
3181 3262 1.398041 CACACGCATACATGTGGAAGG 59.602 52.381 9.11 0.00 42.08 3.46
3182 3263 2.811902 CACACGCATACATGTGGAAG 57.188 50.000 9.11 0.02 42.08 3.46
3187 3268 2.935849 CCATACACACACGCATACATGT 59.064 45.455 2.69 2.69 0.00 3.21
3193 3546 0.613260 AGGACCATACACACACGCAT 59.387 50.000 0.00 0.00 0.00 4.73
3196 3549 1.428448 CACAGGACCATACACACACG 58.572 55.000 0.00 0.00 0.00 4.49
3205 3558 2.042259 CACGCATGCACAGGACCAT 61.042 57.895 19.57 0.00 0.00 3.55
3789 4144 0.732880 GAGGACATGACGTCGTGGTG 60.733 60.000 34.44 21.12 46.42 4.17
4133 4488 4.743057 ATCAGACCGAGTGATCATTCAA 57.257 40.909 17.30 0.00 32.48 2.69
4151 4506 1.140052 CCGTGGGCTTGGTACATATCA 59.860 52.381 0.00 0.00 39.30 2.15
4187 4542 2.360801 ACTAAAAACTGCACGCCATTGT 59.639 40.909 0.00 0.00 0.00 2.71
4207 4562 0.522076 CACGTCGCCGACCTACTAAC 60.522 60.000 12.26 0.00 37.88 2.34
4242 4597 2.095853 CCAACTGCAGCCAATTACTACG 59.904 50.000 15.27 0.00 0.00 3.51
4312 4667 4.051922 GCATTTCCTCGATCTTACATCGT 58.948 43.478 4.06 0.00 41.77 3.73
4327 4694 2.258286 GCCACACCGTGCATTTCC 59.742 61.111 0.00 0.00 31.34 3.13
4350 4717 2.294074 CACCGGTGAAGAAGGAAACAA 58.706 47.619 31.31 0.00 0.00 2.83
4466 4833 5.013547 TCCGATGAAATGGTTACCAACAAT 58.986 37.500 8.63 0.00 36.95 2.71
4468 4835 4.022413 TCCGATGAAATGGTTACCAACA 57.978 40.909 8.63 9.78 36.95 3.33
4487 4854 5.564259 GCTGATGAATAAAGATGCCACATCC 60.564 44.000 4.00 0.00 33.94 3.51
4502 4869 0.107508 CGTGGGTCAGGCTGATGAAT 60.108 55.000 21.84 0.00 0.00 2.57
4533 4900 5.123820 TCCGTGATGACTTGATCAATTTTCC 59.876 40.000 8.96 0.00 41.93 3.13
4543 4910 1.080093 GGCGTCCGTGATGACTTGA 60.080 57.895 0.00 0.00 32.97 3.02
4554 4921 1.067060 TGATTGATAGTGAGGCGTCCG 59.933 52.381 3.56 0.00 0.00 4.79
4707 7207 1.823295 CACACGCTACCAGCCCTAT 59.177 57.895 0.00 0.00 38.18 2.57
4715 7215 1.375396 TGGACATGCACACGCTACC 60.375 57.895 0.00 0.00 39.64 3.18
4794 7294 1.136336 GTTCCGTCAACGTTCTCATGC 60.136 52.381 0.00 0.00 37.74 4.06
4805 7311 0.682852 ACCGATTCAGGTTCCGTCAA 59.317 50.000 0.00 0.00 43.00 3.18
4834 7340 5.817784 AGACGCCTAGCTTAGAATCCTATA 58.182 41.667 0.00 0.00 0.00 1.31
4848 7355 1.540267 CATCCCTCCTAGACGCCTAG 58.460 60.000 0.00 0.00 41.58 3.02
4854 7361 3.244249 GCATGTTACCATCCCTCCTAGAC 60.244 52.174 0.00 0.00 0.00 2.59
4863 7370 2.420022 GTGTCTGTGCATGTTACCATCC 59.580 50.000 0.00 0.00 0.00 3.51
4874 7381 3.544684 AGTGAAATCAAGTGTCTGTGCA 58.455 40.909 0.00 0.00 0.00 4.57
4875 7382 3.561310 TGAGTGAAATCAAGTGTCTGTGC 59.439 43.478 0.00 0.00 0.00 4.57
4876 7383 5.052481 TCTGAGTGAAATCAAGTGTCTGTG 58.948 41.667 0.00 0.00 0.00 3.66
4877 7384 5.282055 TCTGAGTGAAATCAAGTGTCTGT 57.718 39.130 0.00 0.00 0.00 3.41
4885 7392 4.022068 GTGCCCAAATCTGAGTGAAATCAA 60.022 41.667 0.00 0.00 0.00 2.57
4892 7399 1.457346 GGAGTGCCCAAATCTGAGTG 58.543 55.000 0.00 0.00 34.14 3.51
4946 7453 1.153147 GAAAGCCATCGAGTCCCCC 60.153 63.158 0.00 0.00 0.00 5.40
4950 7457 2.010497 GGAAAGGAAAGCCATCGAGTC 58.990 52.381 0.00 0.00 36.29 3.36
4951 7458 1.340114 GGGAAAGGAAAGCCATCGAGT 60.340 52.381 0.00 0.00 36.29 4.18
4952 7459 1.065126 AGGGAAAGGAAAGCCATCGAG 60.065 52.381 0.00 0.00 36.29 4.04
5199 7716 1.757949 GGGGAATAGAGGCCAGAGC 59.242 63.158 5.01 0.00 38.76 4.09
5200 7717 1.476007 CCGGGGAATAGAGGCCAGAG 61.476 65.000 5.01 0.00 0.00 3.35
5201 7718 1.459539 CCGGGGAATAGAGGCCAGA 60.460 63.158 5.01 0.00 0.00 3.86
5202 7719 3.151906 CCGGGGAATAGAGGCCAG 58.848 66.667 5.01 0.00 0.00 4.85
5203 7720 3.168528 GCCGGGGAATAGAGGCCA 61.169 66.667 5.01 0.00 43.54 5.36
5206 7723 1.447643 CACAGCCGGGGAATAGAGG 59.552 63.158 2.18 0.00 0.00 3.69
5207 7724 1.338136 ACCACAGCCGGGGAATAGAG 61.338 60.000 2.18 0.00 0.00 2.43
5208 7725 1.306654 ACCACAGCCGGGGAATAGA 60.307 57.895 2.18 0.00 0.00 1.98
5209 7726 1.153168 CACCACAGCCGGGGAATAG 60.153 63.158 2.18 0.00 0.00 1.73
5210 7727 1.906105 GACACCACAGCCGGGGAATA 61.906 60.000 2.18 0.00 31.94 1.75
5211 7728 3.256960 ACACCACAGCCGGGGAAT 61.257 61.111 2.18 0.00 31.94 3.01
5212 7729 3.948719 GACACCACAGCCGGGGAA 61.949 66.667 2.18 0.00 31.94 3.97
5216 7733 4.988598 AAGCGACACCACAGCCGG 62.989 66.667 0.00 0.00 0.00 6.13
5217 7734 3.414700 GAAGCGACACCACAGCCG 61.415 66.667 0.00 0.00 0.00 5.52
5218 7735 2.029844 GAGAAGCGACACCACAGCC 61.030 63.158 0.00 0.00 0.00 4.85
5219 7736 1.300931 TGAGAAGCGACACCACAGC 60.301 57.895 0.00 0.00 0.00 4.40
5220 7737 1.278172 CGTGAGAAGCGACACCACAG 61.278 60.000 0.00 0.00 34.05 3.66
5221 7738 1.299850 CGTGAGAAGCGACACCACA 60.300 57.895 0.00 0.00 34.05 4.17
5222 7739 1.276145 GACGTGAGAAGCGACACCAC 61.276 60.000 0.00 0.00 34.05 4.16
5223 7740 1.007734 GACGTGAGAAGCGACACCA 60.008 57.895 0.00 0.00 34.05 4.17
5224 7741 0.729816 GAGACGTGAGAAGCGACACC 60.730 60.000 0.00 0.00 34.05 4.16
5225 7742 0.729816 GGAGACGTGAGAAGCGACAC 60.730 60.000 0.00 0.00 0.00 3.67
5226 7743 0.889638 AGGAGACGTGAGAAGCGACA 60.890 55.000 0.00 0.00 0.00 4.35
5227 7744 0.179184 GAGGAGACGTGAGAAGCGAC 60.179 60.000 0.00 0.00 0.00 5.19
5228 7745 0.321741 AGAGGAGACGTGAGAAGCGA 60.322 55.000 0.00 0.00 0.00 4.93
5229 7746 0.179176 CAGAGGAGACGTGAGAAGCG 60.179 60.000 0.00 0.00 0.00 4.68
5230 7747 0.457681 GCAGAGGAGACGTGAGAAGC 60.458 60.000 0.00 0.00 0.00 3.86
5231 7748 1.132262 GAGCAGAGGAGACGTGAGAAG 59.868 57.143 0.00 0.00 0.00 2.85
5232 7749 1.169577 GAGCAGAGGAGACGTGAGAA 58.830 55.000 0.00 0.00 0.00 2.87
5233 7750 0.326595 AGAGCAGAGGAGACGTGAGA 59.673 55.000 0.00 0.00 0.00 3.27
5234 7751 1.132262 GAAGAGCAGAGGAGACGTGAG 59.868 57.143 0.00 0.00 0.00 3.51
5235 7752 1.169577 GAAGAGCAGAGGAGACGTGA 58.830 55.000 0.00 0.00 0.00 4.35
5236 7753 1.132262 GAGAAGAGCAGAGGAGACGTG 59.868 57.143 0.00 0.00 0.00 4.49
5237 7754 1.459450 GAGAAGAGCAGAGGAGACGT 58.541 55.000 0.00 0.00 0.00 4.34
5238 7755 0.738389 GGAGAAGAGCAGAGGAGACG 59.262 60.000 0.00 0.00 0.00 4.18
5239 7756 2.024414 GAGGAGAAGAGCAGAGGAGAC 58.976 57.143 0.00 0.00 0.00 3.36
5240 7757 1.408127 CGAGGAGAAGAGCAGAGGAGA 60.408 57.143 0.00 0.00 0.00 3.71
5241 7758 1.024271 CGAGGAGAAGAGCAGAGGAG 58.976 60.000 0.00 0.00 0.00 3.69
5242 7759 1.034838 GCGAGGAGAAGAGCAGAGGA 61.035 60.000 0.00 0.00 0.00 3.71
5243 7760 1.437160 GCGAGGAGAAGAGCAGAGG 59.563 63.158 0.00 0.00 0.00 3.69
5244 7761 1.318886 TGGCGAGGAGAAGAGCAGAG 61.319 60.000 0.00 0.00 0.00 3.35
5245 7762 0.685785 ATGGCGAGGAGAAGAGCAGA 60.686 55.000 0.00 0.00 0.00 4.26
5246 7763 0.177604 AATGGCGAGGAGAAGAGCAG 59.822 55.000 0.00 0.00 0.00 4.24
5247 7764 0.176680 GAATGGCGAGGAGAAGAGCA 59.823 55.000 0.00 0.00 0.00 4.26
5248 7765 0.531753 GGAATGGCGAGGAGAAGAGC 60.532 60.000 0.00 0.00 0.00 4.09
5249 7766 0.249238 CGGAATGGCGAGGAGAAGAG 60.249 60.000 0.00 0.00 0.00 2.85
5250 7767 1.676678 CCGGAATGGCGAGGAGAAGA 61.677 60.000 0.00 0.00 0.00 2.87
5251 7768 1.227380 CCGGAATGGCGAGGAGAAG 60.227 63.158 0.00 0.00 0.00 2.85
5252 7769 2.731571 CCCGGAATGGCGAGGAGAA 61.732 63.158 0.73 0.00 35.87 2.87
5253 7770 3.154473 CCCGGAATGGCGAGGAGA 61.154 66.667 0.73 0.00 35.87 3.71
5254 7771 3.470888 ACCCGGAATGGCGAGGAG 61.471 66.667 0.73 0.00 35.87 3.69
5255 7772 3.781307 CACCCGGAATGGCGAGGA 61.781 66.667 0.73 0.00 35.87 3.71
5256 7773 4.856801 CCACCCGGAATGGCGAGG 62.857 72.222 0.73 0.00 35.87 4.63
5274 7791 2.040213 GATTGGACAGCGATGGCACG 62.040 60.000 9.61 0.00 43.41 5.34
5275 7792 1.723870 GATTGGACAGCGATGGCAC 59.276 57.895 9.61 0.00 43.41 5.01
5276 7793 1.815003 CGATTGGACAGCGATGGCA 60.815 57.895 9.61 0.00 43.41 4.92
5277 7794 3.017323 CGATTGGACAGCGATGGC 58.983 61.111 5.32 0.00 40.37 4.40
5278 7795 1.091771 AAGCGATTGGACAGCGATGG 61.092 55.000 5.32 0.00 35.78 3.51
5279 7796 0.302890 GAAGCGATTGGACAGCGATG 59.697 55.000 0.00 0.00 35.78 3.84
5280 7797 0.176680 AGAAGCGATTGGACAGCGAT 59.823 50.000 0.00 0.00 35.78 4.58
5281 7798 0.815095 TAGAAGCGATTGGACAGCGA 59.185 50.000 0.00 0.00 35.78 4.93
5282 7799 1.203928 CTAGAAGCGATTGGACAGCG 58.796 55.000 0.00 0.00 35.78 5.18
5283 7800 1.576356 CCTAGAAGCGATTGGACAGC 58.424 55.000 0.00 0.00 0.00 4.40
5284 7801 1.576356 GCCTAGAAGCGATTGGACAG 58.424 55.000 0.00 0.00 0.00 3.51
5285 7802 3.760693 GCCTAGAAGCGATTGGACA 57.239 52.632 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.