Multiple sequence alignment - TraesCS2B01G267800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G267800 chr2B 100.000 3198 0 0 1 3198 360980446 360983643 0.000000e+00 5906.0
1 TraesCS2B01G267800 chr2B 92.063 378 26 4 2825 3198 313537283 313536906 2.180000e-146 529.0
2 TraesCS2B01G267800 chr2B 91.525 59 5 0 2289 2347 361069970 361070028 7.350000e-12 82.4
3 TraesCS2B01G267800 chr2D 94.160 1815 52 15 421 2207 307022794 307021006 0.000000e+00 2715.0
4 TraesCS2B01G267800 chr2D 84.628 631 54 17 2233 2823 307021008 307020381 3.550000e-164 588.0
5 TraesCS2B01G267800 chr2D 92.105 380 25 5 2824 3198 574100022 574099643 6.070000e-147 531.0
6 TraesCS2B01G267800 chr2D 86.287 474 59 5 2356 2824 27583463 27582991 7.910000e-141 510.0
7 TraesCS2B01G267800 chr2D 88.281 384 27 8 1 370 307024704 307024325 8.140000e-121 444.0
8 TraesCS2B01G267800 chr2A 92.236 1507 63 24 773 2274 387641589 387640132 0.000000e+00 2085.0
9 TraesCS2B01G267800 chr2A 86.009 436 20 11 371 776 387642052 387641628 2.280000e-116 429.0
10 TraesCS2B01G267800 chr2A 86.127 346 28 10 42 371 387642363 387642022 3.920000e-94 355.0
11 TraesCS2B01G267800 chr2A 91.667 72 3 1 36 107 387642432 387642364 2.630000e-16 97.1
12 TraesCS2B01G267800 chr1D 87.549 506 46 12 2330 2824 326290520 326291019 1.290000e-158 569.0
13 TraesCS2B01G267800 chr1D 92.781 374 25 2 2825 3197 169123306 169123678 1.010000e-149 540.0
14 TraesCS2B01G267800 chr1D 92.042 377 26 4 2825 3198 308555759 308555384 7.860000e-146 527.0
15 TraesCS2B01G267800 chr1D 92.021 376 28 2 2825 3198 422809796 422810171 7.860000e-146 527.0
16 TraesCS2B01G267800 chr1D 92.021 376 27 3 2825 3198 69780397 69780023 2.830000e-145 525.0
17 TraesCS2B01G267800 chr1D 86.797 462 56 3 2357 2815 124917556 124917097 7.910000e-141 510.0
18 TraesCS2B01G267800 chr4D 88.298 470 52 2 2357 2824 315085141 315084673 7.750000e-156 560.0
19 TraesCS2B01G267800 chr1A 88.085 470 49 5 2357 2824 171465823 171465359 4.660000e-153 551.0
20 TraesCS2B01G267800 chr1A 86.100 482 58 6 2350 2824 203811325 203810846 7.910000e-141 510.0
21 TraesCS2B01G267800 chr5B 92.838 377 23 4 2825 3198 215663189 215662814 7.800000e-151 544.0
22 TraesCS2B01G267800 chr5D 92.063 378 27 2 2823 3197 69073656 69073279 2.180000e-146 529.0
23 TraesCS2B01G267800 chr5D 92.000 375 28 2 2825 3198 565915697 565916070 2.830000e-145 525.0
24 TraesCS2B01G267800 chr7A 86.681 473 54 7 2357 2824 117353615 117353147 1.700000e-142 516.0
25 TraesCS2B01G267800 chr1B 86.724 467 55 4 2357 2821 250414648 250415109 2.200000e-141 512.0
26 TraesCS2B01G267800 chr4A 86.383 470 60 4 2357 2824 160250015 160250482 7.910000e-141 510.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G267800 chr2B 360980446 360983643 3197 False 5906.000 5906 100.00000 1 3198 1 chr2B.!!$F1 3197
1 TraesCS2B01G267800 chr2D 307020381 307024704 4323 True 1249.000 2715 89.02300 1 2823 3 chr2D.!!$R3 2822
2 TraesCS2B01G267800 chr2A 387640132 387642432 2300 True 741.525 2085 89.00975 36 2274 4 chr2A.!!$R1 2238

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
373 456 0.179054 GCCCACCTATCCCTTTCGAC 60.179 60.0 0.00 0.00 0.00 4.20 F
401 484 0.253630 TGGCCCACCTATCCCTTTCT 60.254 55.0 0.00 0.00 36.63 2.52 F
1137 2802 0.525311 GCCAAGCCAAGAAGCTCTTC 59.475 55.0 1.52 1.52 44.11 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1330 2997 0.029300 TTGCAACAGCAAGAACGCTC 59.971 50.0 0.00 0.0 42.91 5.03 R
2013 3685 0.106519 AAACCCTGCAACAGAGCACT 60.107 50.0 0.00 0.0 40.11 4.40 R
2225 3923 0.107703 GTTCATCCGGATCACAGGCA 60.108 55.0 15.88 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.133691 ACTGCATGGTGCTGATATTACG 58.866 45.455 14.41 0.00 45.31 3.18
45 46 0.955905 GTGGTGTTTGGTAACGGCAT 59.044 50.000 0.00 0.00 37.06 4.40
103 167 9.239551 TCTTACTTTTGTACTACTAGATCAGCA 57.760 33.333 0.00 0.00 34.15 4.41
120 184 8.749026 AGATCAGCATCAATTAATATGGATCC 57.251 34.615 4.20 4.20 28.74 3.36
121 185 8.333984 AGATCAGCATCAATTAATATGGATCCA 58.666 33.333 18.88 18.88 28.74 3.41
122 186 8.888836 ATCAGCATCAATTAATATGGATCCAA 57.111 30.769 20.67 8.82 0.00 3.53
123 187 8.709272 TCAGCATCAATTAATATGGATCCAAA 57.291 30.769 20.67 8.96 0.00 3.28
124 188 9.145442 TCAGCATCAATTAATATGGATCCAAAA 57.855 29.630 20.67 10.77 0.00 2.44
240 310 8.117813 TGAAAATTTCGAGGCTATTTTTAGGT 57.882 30.769 7.05 0.00 33.08 3.08
263 334 1.559682 GGAATCTCCAGGCCACTACAA 59.440 52.381 5.01 0.00 36.28 2.41
276 347 5.069251 AGGCCACTACAATACTACTGATGAC 59.931 44.000 5.01 0.00 0.00 3.06
289 360 3.486383 ACTGATGACGACAAACCCAATT 58.514 40.909 0.00 0.00 0.00 2.32
307 378 6.768029 CCAATTGTTGGTTCACACTTATTG 57.232 37.500 4.43 0.00 45.93 1.90
308 379 5.177327 CCAATTGTTGGTTCACACTTATTGC 59.823 40.000 4.43 0.00 45.93 3.56
311 382 4.460263 TGTTGGTTCACACTTATTGCTCT 58.540 39.130 0.00 0.00 0.00 4.09
313 384 6.058833 TGTTGGTTCACACTTATTGCTCTAA 58.941 36.000 0.00 0.00 0.00 2.10
314 385 6.714810 TGTTGGTTCACACTTATTGCTCTAAT 59.285 34.615 0.00 0.00 0.00 1.73
315 386 7.880713 TGTTGGTTCACACTTATTGCTCTAATA 59.119 33.333 0.00 0.00 0.00 0.98
318 389 7.498900 TGGTTCACACTTATTGCTCTAATATGG 59.501 37.037 0.00 0.00 33.13 2.74
321 404 7.226441 TCACACTTATTGCTCTAATATGGCAT 58.774 34.615 4.88 4.88 35.84 4.40
325 408 4.796038 ATTGCTCTAATATGGCATTGGC 57.204 40.909 4.78 2.73 35.84 4.52
364 447 2.919043 CCCACTGGCCCACCTATC 59.081 66.667 0.00 0.00 36.63 2.08
365 448 2.757124 CCCACTGGCCCACCTATCC 61.757 68.421 0.00 0.00 36.63 2.59
366 449 2.757124 CCACTGGCCCACCTATCCC 61.757 68.421 0.00 0.00 36.63 3.85
367 450 1.694169 CACTGGCCCACCTATCCCT 60.694 63.158 0.00 0.00 36.63 4.20
368 451 1.084842 ACTGGCCCACCTATCCCTT 59.915 57.895 0.00 0.00 36.63 3.95
369 452 0.552615 ACTGGCCCACCTATCCCTTT 60.553 55.000 0.00 0.00 36.63 3.11
370 453 0.183731 CTGGCCCACCTATCCCTTTC 59.816 60.000 0.00 0.00 36.63 2.62
371 454 1.148498 GGCCCACCTATCCCTTTCG 59.852 63.158 0.00 0.00 0.00 3.46
372 455 1.342672 GGCCCACCTATCCCTTTCGA 61.343 60.000 0.00 0.00 0.00 3.71
373 456 0.179054 GCCCACCTATCCCTTTCGAC 60.179 60.000 0.00 0.00 0.00 4.20
374 457 1.200519 CCCACCTATCCCTTTCGACA 58.799 55.000 0.00 0.00 0.00 4.35
375 458 1.557832 CCCACCTATCCCTTTCGACAA 59.442 52.381 0.00 0.00 0.00 3.18
376 459 2.420129 CCCACCTATCCCTTTCGACAAG 60.420 54.545 0.00 0.00 0.00 3.16
377 460 2.280628 CACCTATCCCTTTCGACAAGC 58.719 52.381 0.00 0.00 0.00 4.01
378 461 2.093447 CACCTATCCCTTTCGACAAGCT 60.093 50.000 0.00 0.00 0.00 3.74
379 462 2.168728 ACCTATCCCTTTCGACAAGCTC 59.831 50.000 0.00 0.00 0.00 4.09
380 463 2.168521 CCTATCCCTTTCGACAAGCTCA 59.831 50.000 0.00 0.00 0.00 4.26
381 464 2.100605 ATCCCTTTCGACAAGCTCAC 57.899 50.000 0.00 0.00 0.00 3.51
382 465 1.048601 TCCCTTTCGACAAGCTCACT 58.951 50.000 0.00 0.00 0.00 3.41
383 466 1.151668 CCCTTTCGACAAGCTCACTG 58.848 55.000 0.00 0.00 0.00 3.66
384 467 1.151668 CCTTTCGACAAGCTCACTGG 58.848 55.000 0.00 0.00 0.00 4.00
385 468 0.514691 CTTTCGACAAGCTCACTGGC 59.485 55.000 0.00 0.00 0.00 4.85
386 469 0.884704 TTTCGACAAGCTCACTGGCC 60.885 55.000 0.00 0.00 0.00 5.36
387 470 2.731691 TTCGACAAGCTCACTGGCCC 62.732 60.000 0.00 0.00 0.00 5.80
388 471 2.431683 GACAAGCTCACTGGCCCA 59.568 61.111 0.00 0.00 0.00 5.36
401 484 0.253630 TGGCCCACCTATCCCTTTCT 60.254 55.000 0.00 0.00 36.63 2.52
433 2026 8.787852 CAAACTAGTTGCTCTTAAGAATTCCTT 58.212 33.333 9.34 0.00 38.87 3.36
436 2029 9.004717 ACTAGTTGCTCTTAAGAATTCCTTTTC 57.995 33.333 6.63 0.00 36.34 2.29
448 2041 4.566426 ATTCCTTTTCTCCTCCTGACAG 57.434 45.455 0.00 0.00 0.00 3.51
487 2080 2.100197 TGTCTGATTGGTACCTCTCCG 58.900 52.381 14.36 6.43 0.00 4.63
618 2225 6.238925 CCCTTCTTTTTATGTTTGTCGACCTT 60.239 38.462 14.12 0.00 0.00 3.50
627 2234 2.032681 GTCGACCTTGCCTTGCCT 59.967 61.111 3.51 0.00 0.00 4.75
640 2247 1.200020 CCTTGCCTTTTCCGTGCTTAG 59.800 52.381 0.00 0.00 0.00 2.18
683 2306 7.833285 TTAGACAAAATGGAGCCTTTAACTT 57.167 32.000 0.00 0.00 0.00 2.66
687 2310 6.749139 ACAAAATGGAGCCTTTAACTTCTTC 58.251 36.000 0.00 0.00 0.00 2.87
715 2338 4.998671 TCAGATGATTGGAGACTCAGAC 57.001 45.455 4.53 0.00 0.00 3.51
716 2339 3.703556 TCAGATGATTGGAGACTCAGACC 59.296 47.826 4.53 0.00 0.00 3.85
717 2340 3.450096 CAGATGATTGGAGACTCAGACCA 59.550 47.826 4.53 0.00 0.00 4.02
718 2341 4.101274 CAGATGATTGGAGACTCAGACCAT 59.899 45.833 4.53 2.45 33.56 3.55
719 2342 5.303845 CAGATGATTGGAGACTCAGACCATA 59.696 44.000 4.53 0.00 33.56 2.74
720 2343 6.014413 CAGATGATTGGAGACTCAGACCATAT 60.014 42.308 4.53 0.00 33.56 1.78
721 2344 5.541953 TGATTGGAGACTCAGACCATATG 57.458 43.478 4.53 0.00 33.56 1.78
722 2345 5.211201 TGATTGGAGACTCAGACCATATGA 58.789 41.667 3.65 0.00 33.56 2.15
723 2346 5.842874 TGATTGGAGACTCAGACCATATGAT 59.157 40.000 3.65 0.00 33.56 2.45
724 2347 7.012607 TGATTGGAGACTCAGACCATATGATA 58.987 38.462 3.65 0.00 33.56 2.15
725 2348 7.677319 TGATTGGAGACTCAGACCATATGATAT 59.323 37.037 3.65 0.00 33.56 1.63
726 2349 6.847421 TGGAGACTCAGACCATATGATATG 57.153 41.667 3.65 5.46 0.00 1.78
763 2386 4.196971 TGATCAGTCCAATCATCTTGCAG 58.803 43.478 0.00 0.00 0.00 4.41
878 2543 4.757019 ATGATCTGATTCACTCACAGCT 57.243 40.909 0.00 0.00 0.00 4.24
879 2544 5.866159 ATGATCTGATTCACTCACAGCTA 57.134 39.130 0.00 0.00 0.00 3.32
880 2545 5.259832 TGATCTGATTCACTCACAGCTAG 57.740 43.478 0.00 0.00 0.00 3.42
881 2546 3.516981 TCTGATTCACTCACAGCTAGC 57.483 47.619 6.62 6.62 0.00 3.42
1113 2778 1.043116 TCGACGATGAGGGCTCCATT 61.043 55.000 0.00 0.00 0.00 3.16
1137 2802 0.525311 GCCAAGCCAAGAAGCTCTTC 59.475 55.000 1.52 1.52 44.11 2.87
1162 2827 2.016604 GCCACAAGTCTGTTCACCACA 61.017 52.381 0.00 0.00 31.64 4.17
1177 2842 3.461773 ACATCCTCGGCGGTGGAG 61.462 66.667 22.23 17.17 39.08 3.86
1283 2950 1.406219 CTCGCGACGACAATGACTGG 61.406 60.000 3.71 0.00 0.00 4.00
1330 2997 4.142071 TGGAGGAACAAGAAGATCTCATCG 60.142 45.833 0.00 0.00 0.00 3.84
1476 3143 2.816087 CAGGCATGCTCAATGGGTATAC 59.184 50.000 18.92 0.00 36.71 1.47
1490 3157 8.214364 TCAATGGGTATACACTATGCAACAATA 58.786 33.333 6.69 0.00 0.00 1.90
1519 3186 4.162131 ACTCCAACCAATTCTGCAGTTTTT 59.838 37.500 14.67 3.21 0.00 1.94
1520 3187 4.440880 TCCAACCAATTCTGCAGTTTTTG 58.559 39.130 14.67 14.75 0.00 2.44
1529 3196 9.474920 CCAATTCTGCAGTTTTTGTTTTCTATA 57.525 29.630 14.67 0.00 0.00 1.31
1541 3208 9.906660 TTTTTGTTTTCTATATTTGCTGTCGAT 57.093 25.926 0.00 0.00 0.00 3.59
1583 3250 6.202188 GCAGCATAATCATAAGCAAGCATTTT 59.798 34.615 0.00 0.00 32.71 1.82
1606 3273 9.807921 TTTTATGTTTTCAGGTCTCCTTCTAAT 57.192 29.630 0.00 0.00 0.00 1.73
1765 3436 3.365364 GCGCCTTAAGCTTAATGCCTATG 60.365 47.826 29.27 20.41 44.23 2.23
1799 3470 1.974236 CCTGTCAGTTTGTCCTCTCCT 59.026 52.381 0.00 0.00 0.00 3.69
1981 3653 3.049344 GAGGAGGGATTAACACCTGGAT 58.951 50.000 0.00 0.00 37.18 3.41
2013 3685 7.305813 TGGTTTCTGACTACCATTTACACTA 57.694 36.000 6.71 0.00 39.44 2.74
2110 3782 0.597568 TGCTGTACAACATGCTTGGC 59.402 50.000 4.44 0.00 0.00 4.52
2207 3905 4.162509 GGAAGAGCCAGTAGTAGTTGGATT 59.837 45.833 5.07 0.00 36.55 3.01
2208 3906 5.346181 AAGAGCCAGTAGTAGTTGGATTC 57.654 43.478 5.07 2.59 36.55 2.52
2209 3907 4.353777 AGAGCCAGTAGTAGTTGGATTCA 58.646 43.478 5.07 0.00 36.55 2.57
2210 3908 4.160626 AGAGCCAGTAGTAGTTGGATTCAC 59.839 45.833 5.07 0.00 36.55 3.18
2211 3909 3.197983 AGCCAGTAGTAGTTGGATTCACC 59.802 47.826 5.07 0.00 36.55 4.02
2221 3919 2.577606 TGGATTCACCAACGGAACAT 57.422 45.000 0.00 0.00 46.75 2.71
2222 3920 2.432444 TGGATTCACCAACGGAACATC 58.568 47.619 0.00 0.00 46.75 3.06
2223 3921 2.039746 TGGATTCACCAACGGAACATCT 59.960 45.455 0.00 0.00 46.75 2.90
2224 3922 3.262151 TGGATTCACCAACGGAACATCTA 59.738 43.478 0.00 0.00 46.75 1.98
2225 3923 4.080582 TGGATTCACCAACGGAACATCTAT 60.081 41.667 0.00 0.00 46.75 1.98
2226 3924 4.273480 GGATTCACCAACGGAACATCTATG 59.727 45.833 0.00 0.00 38.79 2.23
2227 3925 2.627945 TCACCAACGGAACATCTATGC 58.372 47.619 0.00 0.00 0.00 3.14
2228 3926 1.670811 CACCAACGGAACATCTATGCC 59.329 52.381 0.00 0.00 0.00 4.40
2229 3927 1.559682 ACCAACGGAACATCTATGCCT 59.440 47.619 0.00 0.00 0.00 4.75
2230 3928 1.942657 CCAACGGAACATCTATGCCTG 59.057 52.381 0.00 0.00 0.00 4.85
2231 3929 2.632377 CAACGGAACATCTATGCCTGT 58.368 47.619 0.00 0.00 0.00 4.00
2232 3930 2.315925 ACGGAACATCTATGCCTGTG 57.684 50.000 0.00 0.00 0.00 3.66
2233 3931 1.831106 ACGGAACATCTATGCCTGTGA 59.169 47.619 0.00 0.00 0.00 3.58
2234 3932 2.435805 ACGGAACATCTATGCCTGTGAT 59.564 45.455 0.00 0.00 0.00 3.06
2245 3943 0.179000 GCCTGTGATCCGGATGAACT 59.821 55.000 24.82 0.00 0.00 3.01
2266 3964 9.137459 TGAACTTGTTAGAATTAATGGGTTTGA 57.863 29.630 0.00 0.00 0.00 2.69
2347 4045 7.626452 GCAAATCTTTAATCCCATATCGCTACC 60.626 40.741 0.00 0.00 0.00 3.18
2348 4046 6.620877 ATCTTTAATCCCATATCGCTACCA 57.379 37.500 0.00 0.00 0.00 3.25
2349 4047 6.620877 TCTTTAATCCCATATCGCTACCAT 57.379 37.500 0.00 0.00 0.00 3.55
2350 4048 6.640518 TCTTTAATCCCATATCGCTACCATC 58.359 40.000 0.00 0.00 0.00 3.51
2351 4049 6.440647 TCTTTAATCCCATATCGCTACCATCT 59.559 38.462 0.00 0.00 0.00 2.90
2352 4050 6.620877 TTAATCCCATATCGCTACCATCTT 57.379 37.500 0.00 0.00 0.00 2.40
2353 4051 7.727578 TTAATCCCATATCGCTACCATCTTA 57.272 36.000 0.00 0.00 0.00 2.10
2354 4052 6.814954 AATCCCATATCGCTACCATCTTAT 57.185 37.500 0.00 0.00 0.00 1.73
2361 4077 8.446273 CCATATCGCTACCATCTTATCAAAAAG 58.554 37.037 0.00 0.00 0.00 2.27
2418 4134 0.869730 AACATCCGGTACAAACGCAC 59.130 50.000 0.00 0.00 0.00 5.34
2419 4135 1.286354 ACATCCGGTACAAACGCACG 61.286 55.000 0.00 0.00 0.00 5.34
2429 4145 4.966787 AACGCACGCCCCCACAAT 62.967 61.111 0.00 0.00 0.00 2.71
2432 4148 2.360600 GCACGCCCCCACAATACA 60.361 61.111 0.00 0.00 0.00 2.29
2433 4149 1.752694 GCACGCCCCCACAATACAT 60.753 57.895 0.00 0.00 0.00 2.29
2450 4166 2.202395 ATGCACACACACCCAAGGC 61.202 57.895 0.00 0.00 0.00 4.35
2462 4178 2.057922 ACCCAAGGCAGGATACATAGG 58.942 52.381 0.00 0.00 41.41 2.57
2468 4204 0.034059 GCAGGATACATAGGCGCTGT 59.966 55.000 7.64 6.69 41.41 4.40
2493 4229 0.035056 GCAACACCATCCCTAGCACT 60.035 55.000 0.00 0.00 0.00 4.40
2501 4237 2.224161 CCATCCCTAGCACTACAAGAGC 60.224 54.545 0.00 0.00 31.73 4.09
2504 4240 1.827969 CCCTAGCACTACAAGAGCAGT 59.172 52.381 0.00 0.00 34.13 4.40
2506 4242 2.478709 CCTAGCACTACAAGAGCAGTCG 60.479 54.545 0.00 0.00 34.13 4.18
2511 4247 0.970937 CTACAAGAGCAGTCGGGGGA 60.971 60.000 0.00 0.00 0.00 4.81
2514 4250 0.105039 CAAGAGCAGTCGGGGGATAC 59.895 60.000 0.00 0.00 0.00 2.24
2517 4253 1.001760 AGCAGTCGGGGGATACAGT 59.998 57.895 0.00 0.00 39.74 3.55
2518 4254 0.617820 AGCAGTCGGGGGATACAGTT 60.618 55.000 0.00 0.00 39.74 3.16
2519 4255 0.462047 GCAGTCGGGGGATACAGTTG 60.462 60.000 0.00 0.00 39.74 3.16
2528 4264 2.549349 GGGGATACAGTTGTGAACACGT 60.549 50.000 0.00 0.00 39.74 4.49
2530 4266 3.386486 GGATACAGTTGTGAACACGTCA 58.614 45.455 0.00 0.00 0.00 4.35
2558 4294 3.123804 AGAAGTAAAGCCGCATATGACG 58.876 45.455 6.97 9.57 0.00 4.35
2562 4298 1.014352 AAAGCCGCATATGACGAACC 58.986 50.000 17.40 8.16 0.00 3.62
2563 4299 1.151777 AAGCCGCATATGACGAACCG 61.152 55.000 17.40 6.23 0.00 4.44
2564 4300 1.881252 GCCGCATATGACGAACCGT 60.881 57.895 17.40 0.00 45.10 4.83
2576 4312 1.299976 GAACCGTGGGCTCCAAGAT 59.700 57.895 8.35 0.00 35.05 2.40
2579 4315 2.671070 CGTGGGCTCCAAGATGGT 59.329 61.111 1.83 0.00 39.03 3.55
2600 4336 2.672414 CTTCAGGAAGGGGACGACT 58.328 57.895 1.01 0.00 34.87 4.18
2601 4337 0.247736 CTTCAGGAAGGGGACGACTG 59.752 60.000 1.01 0.00 34.87 3.51
2602 4338 1.192146 TTCAGGAAGGGGACGACTGG 61.192 60.000 0.00 0.00 33.17 4.00
2605 4341 4.097361 GAAGGGGACGACTGGGGC 62.097 72.222 0.00 0.00 0.00 5.80
2606 4342 4.974438 AAGGGGACGACTGGGGCA 62.974 66.667 0.00 0.00 0.00 5.36
2624 4362 3.770040 CCGCCACCGTCTGATCCA 61.770 66.667 0.00 0.00 0.00 3.41
2626 4364 2.100631 CGCCACCGTCTGATCCAAC 61.101 63.158 0.00 0.00 0.00 3.77
2643 4381 3.072476 TCCAACGATCAGAGTTTTCCCTT 59.928 43.478 0.00 0.00 0.00 3.95
2650 4388 3.214328 TCAGAGTTTTCCCTTGAGCAAC 58.786 45.455 0.00 0.00 0.00 4.17
2652 4390 3.571401 CAGAGTTTTCCCTTGAGCAACAT 59.429 43.478 0.00 0.00 0.00 2.71
2653 4391 3.571401 AGAGTTTTCCCTTGAGCAACATG 59.429 43.478 0.00 0.00 0.00 3.21
2656 4394 1.909700 TTCCCTTGAGCAACATGACC 58.090 50.000 0.00 0.00 0.00 4.02
2662 4400 1.210155 GAGCAACATGACCGGCAAC 59.790 57.895 0.00 0.00 0.00 4.17
2725 4463 2.031465 GCCGGTCCGTCCAAAGAA 59.969 61.111 11.06 0.00 35.57 2.52
2730 4468 1.157585 GGTCCGTCCAAAGAAAGAGC 58.842 55.000 0.00 0.00 35.97 4.09
2733 4471 1.691976 TCCGTCCAAAGAAAGAGCAGA 59.308 47.619 0.00 0.00 0.00 4.26
2823 4561 3.673484 CAACCGGGCAGCACCAAG 61.673 66.667 6.32 0.00 42.05 3.61
2824 4562 4.204028 AACCGGGCAGCACCAAGT 62.204 61.111 6.32 0.00 42.05 3.16
2825 4563 4.954970 ACCGGGCAGCACCAAGTG 62.955 66.667 6.32 0.00 42.05 3.16
2826 4564 4.641645 CCGGGCAGCACCAAGTGA 62.642 66.667 0.00 0.00 42.05 3.41
2827 4565 2.360350 CGGGCAGCACCAAGTGAT 60.360 61.111 0.00 0.00 42.05 3.06
2828 4566 1.078497 CGGGCAGCACCAAGTGATA 60.078 57.895 0.00 0.00 42.05 2.15
2829 4567 1.369091 CGGGCAGCACCAAGTGATAC 61.369 60.000 0.00 0.00 42.05 2.24
2830 4568 1.369091 GGGCAGCACCAAGTGATACG 61.369 60.000 0.00 0.00 42.05 3.06
2831 4569 0.673644 GGCAGCACCAAGTGATACGT 60.674 55.000 0.00 0.00 38.86 3.57
2832 4570 0.721718 GCAGCACCAAGTGATACGTC 59.278 55.000 0.00 0.00 35.23 4.34
2833 4571 1.673033 GCAGCACCAAGTGATACGTCT 60.673 52.381 0.00 0.00 35.23 4.18
2834 4572 2.263077 CAGCACCAAGTGATACGTCTC 58.737 52.381 0.00 0.00 35.23 3.36
2835 4573 1.204941 AGCACCAAGTGATACGTCTCC 59.795 52.381 0.00 0.00 35.23 3.71
2836 4574 1.067142 GCACCAAGTGATACGTCTCCA 60.067 52.381 0.00 0.00 35.23 3.86
2837 4575 2.611971 GCACCAAGTGATACGTCTCCAA 60.612 50.000 0.00 0.00 35.23 3.53
2838 4576 2.993899 CACCAAGTGATACGTCTCCAAC 59.006 50.000 0.00 0.00 35.23 3.77
2839 4577 4.458654 CACCAAGTGATACGTCTCCAACG 61.459 52.174 0.00 0.00 45.96 4.10
2855 4593 8.273557 CGTCTCCAACGTATCTATAATTTTTGG 58.726 37.037 0.00 0.00 46.42 3.28
2856 4594 9.106070 GTCTCCAACGTATCTATAATTTTTGGT 57.894 33.333 0.00 0.00 34.94 3.67
2857 4595 9.675464 TCTCCAACGTATCTATAATTTTTGGTT 57.325 29.630 0.00 0.00 34.94 3.67
2858 4596 9.716507 CTCCAACGTATCTATAATTTTTGGTTG 57.283 33.333 0.00 0.00 34.94 3.77
2859 4597 9.233649 TCCAACGTATCTATAATTTTTGGTTGT 57.766 29.630 0.00 0.00 34.94 3.32
2860 4598 9.849166 CCAACGTATCTATAATTTTTGGTTGTT 57.151 29.630 0.00 0.00 31.64 2.83
2863 4601 9.233649 ACGTATCTATAATTTTTGGTTGTTCCA 57.766 29.630 0.00 0.00 45.60 3.53
2866 4604 8.947055 ATCTATAATTTTTGGTTGTTCCATGC 57.053 30.769 0.00 0.00 46.60 4.06
2867 4605 8.133024 TCTATAATTTTTGGTTGTTCCATGCT 57.867 30.769 0.00 0.00 46.60 3.79
2868 4606 8.034215 TCTATAATTTTTGGTTGTTCCATGCTG 58.966 33.333 0.00 0.00 46.60 4.41
2869 4607 3.902881 TTTTTGGTTGTTCCATGCTGT 57.097 38.095 0.00 0.00 46.60 4.40
2870 4608 3.902881 TTTTGGTTGTTCCATGCTGTT 57.097 38.095 0.00 0.00 46.60 3.16
2871 4609 5.344743 TTTTTGGTTGTTCCATGCTGTTA 57.655 34.783 0.00 0.00 46.60 2.41
2872 4610 5.543507 TTTTGGTTGTTCCATGCTGTTAT 57.456 34.783 0.00 0.00 46.60 1.89
2873 4611 6.656632 TTTTGGTTGTTCCATGCTGTTATA 57.343 33.333 0.00 0.00 46.60 0.98
2874 4612 6.849085 TTTGGTTGTTCCATGCTGTTATAT 57.151 33.333 0.00 0.00 46.60 0.86
2875 4613 6.849085 TTGGTTGTTCCATGCTGTTATATT 57.151 33.333 0.00 0.00 46.60 1.28
2876 4614 7.946381 TTGGTTGTTCCATGCTGTTATATTA 57.054 32.000 0.00 0.00 46.60 0.98
2877 4615 8.532186 TTGGTTGTTCCATGCTGTTATATTAT 57.468 30.769 0.00 0.00 46.60 1.28
2878 4616 8.165239 TGGTTGTTCCATGCTGTTATATTATC 57.835 34.615 0.00 0.00 41.93 1.75
2879 4617 7.777440 TGGTTGTTCCATGCTGTTATATTATCA 59.223 33.333 0.00 0.00 41.93 2.15
2880 4618 8.796475 GGTTGTTCCATGCTGTTATATTATCAT 58.204 33.333 0.00 0.00 35.97 2.45
2883 4621 9.797642 TGTTCCATGCTGTTATATTATCATTCT 57.202 29.630 0.00 0.00 0.00 2.40
2886 4624 9.234827 TCCATGCTGTTATATTATCATTCTTGG 57.765 33.333 0.00 0.00 0.00 3.61
2887 4625 9.234827 CCATGCTGTTATATTATCATTCTTGGA 57.765 33.333 0.00 0.00 0.00 3.53
2890 4628 9.797642 TGCTGTTATATTATCATTCTTGGATGT 57.202 29.630 0.00 0.00 0.00 3.06
2900 4638 9.958180 TTATCATTCTTGGATGTTTTAGAGTCA 57.042 29.630 0.00 0.00 0.00 3.41
2902 4640 8.868522 TCATTCTTGGATGTTTTAGAGTCATT 57.131 30.769 0.00 0.00 0.00 2.57
2903 4641 9.300681 TCATTCTTGGATGTTTTAGAGTCATTT 57.699 29.630 0.00 0.00 0.00 2.32
2904 4642 9.918630 CATTCTTGGATGTTTTAGAGTCATTTT 57.081 29.630 0.00 0.00 0.00 1.82
2940 4678 9.542462 TTTGATACTAACCTATTGACATAGTGC 57.458 33.333 0.00 0.00 31.64 4.40
2941 4679 7.667557 TGATACTAACCTATTGACATAGTGCC 58.332 38.462 0.00 0.00 31.64 5.01
2942 4680 5.291905 ACTAACCTATTGACATAGTGCCC 57.708 43.478 0.00 0.00 31.64 5.36
2943 4681 4.719773 ACTAACCTATTGACATAGTGCCCA 59.280 41.667 0.00 0.00 31.64 5.36
2944 4682 3.845781 ACCTATTGACATAGTGCCCAG 57.154 47.619 0.00 0.00 31.64 4.45
2945 4683 3.115390 ACCTATTGACATAGTGCCCAGT 58.885 45.455 0.00 0.00 31.64 4.00
2946 4684 3.118261 ACCTATTGACATAGTGCCCAGTG 60.118 47.826 0.00 0.00 31.64 3.66
2947 4685 3.118261 CCTATTGACATAGTGCCCAGTGT 60.118 47.826 0.00 0.00 31.64 3.55
2948 4686 2.472695 TTGACATAGTGCCCAGTGTC 57.527 50.000 0.00 0.00 40.93 3.67
2949 4687 1.347062 TGACATAGTGCCCAGTGTCA 58.653 50.000 3.18 3.18 46.08 3.58
2950 4688 1.276138 TGACATAGTGCCCAGTGTCAG 59.724 52.381 3.18 0.00 44.14 3.51
2951 4689 1.276421 GACATAGTGCCCAGTGTCAGT 59.724 52.381 0.00 0.00 40.41 3.41
2952 4690 1.699634 ACATAGTGCCCAGTGTCAGTT 59.300 47.619 0.00 0.00 0.00 3.16
2953 4691 2.079158 CATAGTGCCCAGTGTCAGTTG 58.921 52.381 0.00 0.00 0.00 3.16
2954 4692 0.250295 TAGTGCCCAGTGTCAGTTGC 60.250 55.000 0.00 0.00 0.00 4.17
2955 4693 1.526917 GTGCCCAGTGTCAGTTGCT 60.527 57.895 0.00 0.00 0.00 3.91
2956 4694 1.526686 TGCCCAGTGTCAGTTGCTG 60.527 57.895 0.00 0.00 0.00 4.41
2957 4695 1.526917 GCCCAGTGTCAGTTGCTGT 60.527 57.895 0.00 0.00 32.61 4.40
2958 4696 1.103398 GCCCAGTGTCAGTTGCTGTT 61.103 55.000 0.00 0.00 32.61 3.16
2959 4697 1.392589 CCCAGTGTCAGTTGCTGTTT 58.607 50.000 0.00 0.00 32.61 2.83
2960 4698 1.750778 CCCAGTGTCAGTTGCTGTTTT 59.249 47.619 0.00 0.00 32.61 2.43
2961 4699 2.223572 CCCAGTGTCAGTTGCTGTTTTC 60.224 50.000 0.00 0.00 32.61 2.29
2962 4700 2.684881 CCAGTGTCAGTTGCTGTTTTCT 59.315 45.455 0.00 0.00 32.61 2.52
2963 4701 3.488047 CCAGTGTCAGTTGCTGTTTTCTG 60.488 47.826 0.00 0.00 32.61 3.02
2964 4702 2.098117 AGTGTCAGTTGCTGTTTTCTGC 59.902 45.455 0.00 0.00 43.52 4.26
2974 4712 5.964887 TGCTGTTTTCTGCATGTTTTTAC 57.035 34.783 0.00 0.00 46.77 2.01
2975 4713 5.414360 TGCTGTTTTCTGCATGTTTTTACA 58.586 33.333 0.00 0.00 46.77 2.41
2976 4714 6.047870 TGCTGTTTTCTGCATGTTTTTACAT 58.952 32.000 0.00 0.00 46.77 2.29
2977 4715 6.200665 TGCTGTTTTCTGCATGTTTTTACATC 59.799 34.615 0.00 0.00 46.77 3.06
2978 4716 6.614162 GCTGTTTTCTGCATGTTTTTACATCG 60.614 38.462 0.00 0.00 42.90 3.84
2979 4717 5.174761 TGTTTTCTGCATGTTTTTACATCGC 59.825 36.000 0.00 0.00 0.00 4.58
2980 4718 4.495911 TTCTGCATGTTTTTACATCGCA 57.504 36.364 0.00 11.79 35.03 5.10
2981 4719 4.082274 TCTGCATGTTTTTACATCGCAG 57.918 40.909 22.38 22.38 44.20 5.18
2982 4720 3.119884 TCTGCATGTTTTTACATCGCAGG 60.120 43.478 24.91 15.52 43.70 4.85
2983 4721 2.816672 TGCATGTTTTTACATCGCAGGA 59.183 40.909 0.00 0.00 33.05 3.86
2984 4722 3.254411 TGCATGTTTTTACATCGCAGGAA 59.746 39.130 0.00 0.00 33.05 3.36
2985 4723 4.233789 GCATGTTTTTACATCGCAGGAAA 58.766 39.130 0.00 0.00 0.00 3.13
2986 4724 4.864247 GCATGTTTTTACATCGCAGGAAAT 59.136 37.500 0.00 0.00 0.00 2.17
2987 4725 5.004726 GCATGTTTTTACATCGCAGGAAATC 59.995 40.000 0.00 0.00 0.00 2.17
2988 4726 5.697473 TGTTTTTACATCGCAGGAAATCA 57.303 34.783 0.00 0.00 0.00 2.57
2989 4727 6.078202 TGTTTTTACATCGCAGGAAATCAA 57.922 33.333 0.00 0.00 0.00 2.57
2990 4728 6.686630 TGTTTTTACATCGCAGGAAATCAAT 58.313 32.000 0.00 0.00 0.00 2.57
2991 4729 7.821652 TGTTTTTACATCGCAGGAAATCAATA 58.178 30.769 0.00 0.00 0.00 1.90
2992 4730 8.465999 TGTTTTTACATCGCAGGAAATCAATAT 58.534 29.630 0.00 0.00 0.00 1.28
2993 4731 8.958043 GTTTTTACATCGCAGGAAATCAATATC 58.042 33.333 0.00 0.00 0.00 1.63
2994 4732 7.800155 TTTACATCGCAGGAAATCAATATCA 57.200 32.000 0.00 0.00 0.00 2.15
2995 4733 7.800155 TTACATCGCAGGAAATCAATATCAA 57.200 32.000 0.00 0.00 0.00 2.57
2996 4734 6.698008 ACATCGCAGGAAATCAATATCAAA 57.302 33.333 0.00 0.00 0.00 2.69
2997 4735 6.498304 ACATCGCAGGAAATCAATATCAAAC 58.502 36.000 0.00 0.00 0.00 2.93
2998 4736 5.155509 TCGCAGGAAATCAATATCAAACG 57.844 39.130 0.00 0.00 0.00 3.60
2999 4737 4.035091 TCGCAGGAAATCAATATCAAACGG 59.965 41.667 0.00 0.00 0.00 4.44
3000 4738 4.035091 CGCAGGAAATCAATATCAAACGGA 59.965 41.667 0.00 0.00 0.00 4.69
3001 4739 5.514279 GCAGGAAATCAATATCAAACGGAG 58.486 41.667 0.00 0.00 0.00 4.63
3003 4741 6.719365 CAGGAAATCAATATCAAACGGAGTC 58.281 40.000 0.00 0.00 45.00 3.36
3004 4742 5.823045 AGGAAATCAATATCAAACGGAGTCC 59.177 40.000 0.00 0.00 45.00 3.85
3005 4743 5.588648 GGAAATCAATATCAAACGGAGTCCA 59.411 40.000 10.49 0.00 45.00 4.02
3006 4744 6.094881 GGAAATCAATATCAAACGGAGTCCAA 59.905 38.462 10.49 0.00 45.00 3.53
3007 4745 7.362574 GGAAATCAATATCAAACGGAGTCCAAA 60.363 37.037 10.49 0.00 45.00 3.28
3008 4746 5.873179 TCAATATCAAACGGAGTCCAAAC 57.127 39.130 10.49 0.00 45.00 2.93
3009 4747 4.390603 TCAATATCAAACGGAGTCCAAACG 59.609 41.667 10.49 0.00 45.00 3.60
3010 4748 0.872388 ATCAAACGGAGTCCAAACGC 59.128 50.000 10.49 0.00 45.00 4.84
3011 4749 0.462225 TCAAACGGAGTCCAAACGCA 60.462 50.000 10.49 0.00 45.00 5.24
3012 4750 0.378962 CAAACGGAGTCCAAACGCAA 59.621 50.000 10.49 0.00 45.00 4.85
3013 4751 0.379316 AAACGGAGTCCAAACGCAAC 59.621 50.000 10.49 0.00 45.00 4.17
3014 4752 0.745128 AACGGAGTCCAAACGCAACA 60.745 50.000 10.49 0.00 45.00 3.33
3015 4753 0.745128 ACGGAGTCCAAACGCAACAA 60.745 50.000 10.49 0.00 29.74 2.83
3016 4754 0.378962 CGGAGTCCAAACGCAACAAA 59.621 50.000 10.49 0.00 0.00 2.83
3017 4755 1.202200 CGGAGTCCAAACGCAACAAAA 60.202 47.619 10.49 0.00 0.00 2.44
3018 4756 2.190161 GGAGTCCAAACGCAACAAAAC 58.810 47.619 3.60 0.00 0.00 2.43
3019 4757 2.159296 GGAGTCCAAACGCAACAAAACT 60.159 45.455 3.60 0.00 0.00 2.66
3020 4758 3.507786 GAGTCCAAACGCAACAAAACTT 58.492 40.909 0.00 0.00 0.00 2.66
3021 4759 3.920446 AGTCCAAACGCAACAAAACTTT 58.080 36.364 0.00 0.00 0.00 2.66
3022 4760 4.311606 AGTCCAAACGCAACAAAACTTTT 58.688 34.783 0.00 0.00 0.00 2.27
3023 4761 4.752604 AGTCCAAACGCAACAAAACTTTTT 59.247 33.333 0.00 0.00 0.00 1.94
3051 4789 2.978156 TTTTGGGCCAGAAGACATCT 57.022 45.000 6.23 0.00 39.68 2.90
3052 4790 4.380843 TTTTTGGGCCAGAAGACATCTA 57.619 40.909 6.23 0.00 36.32 1.98
3053 4791 3.634397 TTTGGGCCAGAAGACATCTAG 57.366 47.619 6.23 0.00 36.32 2.43
3054 4792 2.254152 TGGGCCAGAAGACATCTAGT 57.746 50.000 0.00 0.00 36.32 2.57
3055 4793 1.833630 TGGGCCAGAAGACATCTAGTG 59.166 52.381 0.00 0.00 36.32 2.74
3056 4794 1.139853 GGGCCAGAAGACATCTAGTGG 59.860 57.143 4.39 5.44 36.32 4.00
3057 4795 1.139853 GGCCAGAAGACATCTAGTGGG 59.860 57.143 0.00 0.00 36.32 4.61
3058 4796 1.474143 GCCAGAAGACATCTAGTGGGC 60.474 57.143 10.16 0.00 36.64 5.36
3059 4797 1.139853 CCAGAAGACATCTAGTGGGCC 59.860 57.143 0.00 0.00 36.32 5.80
3060 4798 1.833630 CAGAAGACATCTAGTGGGCCA 59.166 52.381 0.00 0.00 36.32 5.36
3061 4799 2.114616 AGAAGACATCTAGTGGGCCAG 58.885 52.381 6.40 0.00 36.32 4.85
3062 4800 2.111384 GAAGACATCTAGTGGGCCAGA 58.889 52.381 6.40 0.00 0.00 3.86
3063 4801 2.254152 AGACATCTAGTGGGCCAGAA 57.746 50.000 6.40 0.00 0.00 3.02
3064 4802 2.551270 AGACATCTAGTGGGCCAGAAA 58.449 47.619 6.40 0.00 0.00 2.52
3065 4803 2.912956 AGACATCTAGTGGGCCAGAAAA 59.087 45.455 6.40 0.00 0.00 2.29
3066 4804 3.054802 AGACATCTAGTGGGCCAGAAAAG 60.055 47.826 6.40 1.82 0.00 2.27
3067 4805 2.019984 CATCTAGTGGGCCAGAAAAGC 58.980 52.381 6.40 0.00 0.00 3.51
3068 4806 1.064003 TCTAGTGGGCCAGAAAAGCA 58.936 50.000 6.40 0.00 0.00 3.91
3069 4807 1.168714 CTAGTGGGCCAGAAAAGCAC 58.831 55.000 6.40 0.72 0.00 4.40
3070 4808 0.251165 TAGTGGGCCAGAAAAGCACC 60.251 55.000 6.40 0.00 30.45 5.01
3071 4809 1.531602 GTGGGCCAGAAAAGCACCT 60.532 57.895 6.40 0.00 30.45 4.00
3072 4810 1.531365 TGGGCCAGAAAAGCACCTG 60.531 57.895 0.00 0.00 30.45 4.00
3075 4813 4.102113 CCAGAAAAGCACCTGGGG 57.898 61.111 0.00 0.00 44.68 4.96
3076 4814 1.607467 CCAGAAAAGCACCTGGGGG 60.607 63.158 0.00 0.00 44.68 5.40
3089 4827 4.779733 GGGGGTGCTCCGAGGAGA 62.780 72.222 22.32 5.39 44.53 3.71
3090 4828 3.151022 GGGGTGCTCCGAGGAGAG 61.151 72.222 22.32 0.00 44.53 3.20
3097 4835 2.410466 CTCCGAGGAGAGCACTACC 58.590 63.158 13.69 0.00 44.53 3.18
3098 4836 1.076923 TCCGAGGAGAGCACTACCC 60.077 63.158 0.00 0.00 0.00 3.69
3099 4837 1.379977 CCGAGGAGAGCACTACCCA 60.380 63.158 0.00 0.00 0.00 4.51
3100 4838 1.668101 CCGAGGAGAGCACTACCCAC 61.668 65.000 0.00 0.00 0.00 4.61
3101 4839 1.668101 CGAGGAGAGCACTACCCACC 61.668 65.000 0.00 0.00 0.00 4.61
3102 4840 0.614979 GAGGAGAGCACTACCCACCA 60.615 60.000 0.00 0.00 0.00 4.17
3103 4841 0.178903 AGGAGAGCACTACCCACCAA 60.179 55.000 0.00 0.00 0.00 3.67
3104 4842 0.250513 GGAGAGCACTACCCACCAAG 59.749 60.000 0.00 0.00 0.00 3.61
3105 4843 0.250513 GAGAGCACTACCCACCAAGG 59.749 60.000 0.00 0.00 37.03 3.61
3106 4844 1.377333 GAGCACTACCCACCAAGGC 60.377 63.158 0.00 0.00 35.39 4.35
3107 4845 2.746277 GCACTACCCACCAAGGCG 60.746 66.667 0.00 0.00 35.39 5.52
3108 4846 2.746277 CACTACCCACCAAGGCGC 60.746 66.667 0.00 0.00 35.39 6.53
3109 4847 4.388499 ACTACCCACCAAGGCGCG 62.388 66.667 0.00 0.00 35.39 6.86
3173 4911 3.330720 CCCCCTGAACCGCCTCTT 61.331 66.667 0.00 0.00 0.00 2.85
3174 4912 2.757077 CCCCTGAACCGCCTCTTT 59.243 61.111 0.00 0.00 0.00 2.52
3175 4913 1.675641 CCCCTGAACCGCCTCTTTG 60.676 63.158 0.00 0.00 0.00 2.77
3176 4914 2.335712 CCCTGAACCGCCTCTTTGC 61.336 63.158 0.00 0.00 0.00 3.68
3177 4915 1.302832 CCTGAACCGCCTCTTTGCT 60.303 57.895 0.00 0.00 0.00 3.91
3178 4916 0.890996 CCTGAACCGCCTCTTTGCTT 60.891 55.000 0.00 0.00 0.00 3.91
3179 4917 0.954452 CTGAACCGCCTCTTTGCTTT 59.046 50.000 0.00 0.00 0.00 3.51
3180 4918 2.151202 CTGAACCGCCTCTTTGCTTTA 58.849 47.619 0.00 0.00 0.00 1.85
3181 4919 2.749621 CTGAACCGCCTCTTTGCTTTAT 59.250 45.455 0.00 0.00 0.00 1.40
3182 4920 3.938963 CTGAACCGCCTCTTTGCTTTATA 59.061 43.478 0.00 0.00 0.00 0.98
3183 4921 4.328536 TGAACCGCCTCTTTGCTTTATAA 58.671 39.130 0.00 0.00 0.00 0.98
3184 4922 4.762765 TGAACCGCCTCTTTGCTTTATAAA 59.237 37.500 0.00 0.00 0.00 1.40
3185 4923 5.417580 TGAACCGCCTCTTTGCTTTATAAAT 59.582 36.000 0.00 0.00 0.00 1.40
3186 4924 6.600032 TGAACCGCCTCTTTGCTTTATAAATA 59.400 34.615 0.00 0.00 0.00 1.40
3187 4925 6.373186 ACCGCCTCTTTGCTTTATAAATAC 57.627 37.500 0.00 0.00 0.00 1.89
3188 4926 5.298527 ACCGCCTCTTTGCTTTATAAATACC 59.701 40.000 0.00 0.00 0.00 2.73
3189 4927 5.278315 CCGCCTCTTTGCTTTATAAATACCC 60.278 44.000 0.00 0.00 0.00 3.69
3190 4928 5.278315 CGCCTCTTTGCTTTATAAATACCCC 60.278 44.000 0.00 0.00 0.00 4.95
3191 4929 5.596772 GCCTCTTTGCTTTATAAATACCCCA 59.403 40.000 0.00 0.00 0.00 4.96
3192 4930 6.097696 GCCTCTTTGCTTTATAAATACCCCAA 59.902 38.462 0.00 0.00 0.00 4.12
3193 4931 7.202001 GCCTCTTTGCTTTATAAATACCCCAAT 60.202 37.037 0.00 0.00 0.00 3.16
3194 4932 9.362151 CCTCTTTGCTTTATAAATACCCCAATA 57.638 33.333 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.093711 ACAGCACGTAATATCAGCACCA 60.094 45.455 0.00 0.00 0.00 4.17
21 22 1.268335 CGTTACCAAACACCACAGCAC 60.268 52.381 0.00 0.00 35.16 4.40
45 46 5.670792 AGATATTTACTGGTTCGTGGTCA 57.329 39.130 0.00 0.00 0.00 4.02
123 187 8.880878 GTTCTCTCAGAAAAAGAACTACTCTT 57.119 34.615 7.12 0.00 46.92 2.85
150 220 7.514721 AGGGAAAAACTATGTCTTGTACTCAA 58.485 34.615 0.00 0.00 0.00 3.02
183 253 9.806203 AAAACAAAGTTACCTTAACCATGTAAC 57.194 29.630 0.00 0.00 42.82 2.50
186 256 8.755028 AGAAAAACAAAGTTACCTTAACCATGT 58.245 29.630 0.00 0.00 38.69 3.21
215 285 8.117813 ACCTAAAAATAGCCTCGAAATTTTCA 57.882 30.769 9.66 0.00 32.98 2.69
240 310 2.270434 AGTGGCCTGGAGATTCCTTA 57.730 50.000 3.32 0.00 37.46 2.69
263 334 4.464951 TGGGTTTGTCGTCATCAGTAGTAT 59.535 41.667 0.00 0.00 0.00 2.12
289 360 4.460263 AGAGCAATAAGTGTGAACCAACA 58.540 39.130 0.00 0.00 0.00 3.33
325 408 0.322098 TGTCGTAATTGGGCTGTGGG 60.322 55.000 0.00 0.00 0.00 4.61
355 438 1.200519 TGTCGAAAGGGATAGGTGGG 58.799 55.000 0.00 0.00 0.00 4.61
359 442 2.168521 TGAGCTTGTCGAAAGGGATAGG 59.831 50.000 0.00 0.00 0.00 2.57
360 443 3.118956 AGTGAGCTTGTCGAAAGGGATAG 60.119 47.826 0.00 0.00 0.00 2.08
361 444 2.832129 AGTGAGCTTGTCGAAAGGGATA 59.168 45.455 0.00 0.00 0.00 2.59
362 445 1.625818 AGTGAGCTTGTCGAAAGGGAT 59.374 47.619 0.00 0.00 0.00 3.85
363 446 1.048601 AGTGAGCTTGTCGAAAGGGA 58.951 50.000 0.00 0.00 0.00 4.20
364 447 1.151668 CAGTGAGCTTGTCGAAAGGG 58.848 55.000 0.00 0.00 0.00 3.95
365 448 1.151668 CCAGTGAGCTTGTCGAAAGG 58.848 55.000 0.00 0.00 0.00 3.11
366 449 0.514691 GCCAGTGAGCTTGTCGAAAG 59.485 55.000 0.00 0.00 0.00 2.62
367 450 0.884704 GGCCAGTGAGCTTGTCGAAA 60.885 55.000 0.00 0.00 0.00 3.46
368 451 1.301716 GGCCAGTGAGCTTGTCGAA 60.302 57.895 0.00 0.00 0.00 3.71
369 452 2.343758 GGCCAGTGAGCTTGTCGA 59.656 61.111 0.00 0.00 0.00 4.20
370 453 2.743928 GGGCCAGTGAGCTTGTCG 60.744 66.667 4.39 0.00 0.00 4.35
371 454 1.968540 GTGGGCCAGTGAGCTTGTC 60.969 63.158 6.40 0.00 0.00 3.18
372 455 2.113986 GTGGGCCAGTGAGCTTGT 59.886 61.111 6.40 0.00 0.00 3.16
373 456 1.841302 TAGGTGGGCCAGTGAGCTTG 61.841 60.000 6.40 0.00 37.19 4.01
374 457 0.916358 ATAGGTGGGCCAGTGAGCTT 60.916 55.000 6.40 0.00 37.19 3.74
375 458 1.307343 ATAGGTGGGCCAGTGAGCT 60.307 57.895 6.40 1.73 37.19 4.09
376 459 1.147153 GATAGGTGGGCCAGTGAGC 59.853 63.158 6.40 0.00 37.19 4.26
377 460 1.700042 GGGATAGGTGGGCCAGTGAG 61.700 65.000 6.40 0.00 37.19 3.51
378 461 1.692749 GGGATAGGTGGGCCAGTGA 60.693 63.158 6.40 0.00 37.19 3.41
379 462 1.281925 AAGGGATAGGTGGGCCAGTG 61.282 60.000 6.40 0.00 37.19 3.66
380 463 0.552615 AAAGGGATAGGTGGGCCAGT 60.553 55.000 6.40 0.00 37.19 4.00
381 464 0.183731 GAAAGGGATAGGTGGGCCAG 59.816 60.000 6.40 0.00 37.19 4.85
382 465 0.253630 AGAAAGGGATAGGTGGGCCA 60.254 55.000 0.00 0.00 37.19 5.36
383 466 0.927029 AAGAAAGGGATAGGTGGGCC 59.073 55.000 0.00 0.00 0.00 5.80
384 467 2.025321 TGAAAGAAAGGGATAGGTGGGC 60.025 50.000 0.00 0.00 0.00 5.36
385 468 4.017126 GTTGAAAGAAAGGGATAGGTGGG 58.983 47.826 0.00 0.00 0.00 4.61
386 469 4.662278 TGTTGAAAGAAAGGGATAGGTGG 58.338 43.478 0.00 0.00 0.00 4.61
387 470 6.265422 AGTTTGTTGAAAGAAAGGGATAGGTG 59.735 38.462 0.00 0.00 0.00 4.00
388 471 6.373759 AGTTTGTTGAAAGAAAGGGATAGGT 58.626 36.000 0.00 0.00 0.00 3.08
433 2026 1.978580 GGGAACTGTCAGGAGGAGAAA 59.021 52.381 4.53 0.00 0.00 2.52
436 2029 1.002544 GTTGGGAACTGTCAGGAGGAG 59.997 57.143 4.53 0.00 0.00 3.69
448 2041 2.239400 CAAGAGGGGAAAGTTGGGAAC 58.761 52.381 0.00 0.00 0.00 3.62
487 2080 1.078143 ATCCCAAGAAGCAGGCGTC 60.078 57.895 0.00 0.00 0.00 5.19
618 2225 2.855514 GCACGGAAAAGGCAAGGCA 61.856 57.895 0.00 0.00 0.00 4.75
627 2234 4.200874 TCCAGTTTTCTAAGCACGGAAAA 58.799 39.130 6.63 6.63 38.55 2.29
669 2292 5.445964 ACTTTGAAGAAGTTAAAGGCTCCA 58.554 37.500 0.00 0.00 36.11 3.86
683 2306 7.173907 GTCTCCAATCATCTGAAACTTTGAAGA 59.826 37.037 0.00 0.00 0.00 2.87
687 2310 6.429078 TGAGTCTCCAATCATCTGAAACTTTG 59.571 38.462 0.00 0.00 0.00 2.77
715 2338 3.308035 AGGCATGCCCATATCATATGG 57.692 47.619 33.14 16.11 38.88 2.74
716 2339 5.443283 ACTAAGGCATGCCCATATCATATG 58.557 41.667 33.14 14.87 36.58 1.78
717 2340 5.722172 ACTAAGGCATGCCCATATCATAT 57.278 39.130 33.14 8.45 36.58 1.78
718 2341 5.519183 AACTAAGGCATGCCCATATCATA 57.481 39.130 33.14 13.25 36.58 2.15
719 2342 4.393239 AACTAAGGCATGCCCATATCAT 57.607 40.909 33.14 10.12 36.58 2.45
720 2343 3.882102 AACTAAGGCATGCCCATATCA 57.118 42.857 33.14 10.86 36.58 2.15
721 2344 4.144297 TCAAACTAAGGCATGCCCATATC 58.856 43.478 33.14 7.23 36.58 1.63
722 2345 4.183223 TCAAACTAAGGCATGCCCATAT 57.817 40.909 33.14 18.81 36.58 1.78
723 2346 3.660970 TCAAACTAAGGCATGCCCATA 57.339 42.857 33.14 23.77 36.58 2.74
724 2347 2.530460 TCAAACTAAGGCATGCCCAT 57.470 45.000 33.14 23.94 36.58 4.00
725 2348 2.291475 TGATCAAACTAAGGCATGCCCA 60.291 45.455 33.14 20.09 36.58 5.36
726 2349 2.360165 CTGATCAAACTAAGGCATGCCC 59.640 50.000 33.14 15.39 36.58 5.36
878 2543 1.276421 GTGCCCTTCTCAGAACTGCTA 59.724 52.381 5.29 0.00 0.00 3.49
879 2544 0.036022 GTGCCCTTCTCAGAACTGCT 59.964 55.000 5.29 0.00 0.00 4.24
880 2545 0.036022 AGTGCCCTTCTCAGAACTGC 59.964 55.000 0.00 0.00 0.00 4.40
881 2546 3.594134 CTTAGTGCCCTTCTCAGAACTG 58.406 50.000 0.00 0.00 0.00 3.16
933 2598 4.784710 GCGAGCAACTCAAGCTTCATATTC 60.785 45.833 0.00 0.00 43.58 1.75
986 2651 1.384191 GCCATCCTTCCACACCCTT 59.616 57.895 0.00 0.00 0.00 3.95
1137 2802 4.988598 ACAGACTTGTGGCCGCCG 62.989 66.667 15.15 7.53 35.83 6.46
1162 2827 1.762460 ATTCTCCACCGCCGAGGAT 60.762 57.895 3.89 0.00 45.00 3.24
1177 2842 5.532664 AAGTATAAGAGGTCCGGACATTC 57.467 43.478 34.40 28.32 0.00 2.67
1184 2849 6.494146 AGGGAGATAAAAGTATAAGAGGTCCG 59.506 42.308 0.00 0.00 0.00 4.79
1330 2997 0.029300 TTGCAACAGCAAGAACGCTC 59.971 50.000 0.00 0.00 42.91 5.03
1476 3143 7.144661 TGGAGTTTTTGTATTGTTGCATAGTG 58.855 34.615 0.00 0.00 0.00 2.74
1490 3157 4.081198 TGCAGAATTGGTTGGAGTTTTTGT 60.081 37.500 0.00 0.00 0.00 2.83
1519 3186 7.985184 AGGTATCGACAGCAAATATAGAAAACA 59.015 33.333 0.00 0.00 0.00 2.83
1520 3187 8.276325 CAGGTATCGACAGCAAATATAGAAAAC 58.724 37.037 0.00 0.00 0.00 2.43
1529 3196 4.207891 AGTTCAGGTATCGACAGCAAAT 57.792 40.909 0.00 0.00 0.00 2.32
1541 3208 2.290071 GCTGCCTACCAAAGTTCAGGTA 60.290 50.000 6.91 6.91 39.31 3.08
1583 3250 7.824289 CACATTAGAAGGAGACCTGAAAACATA 59.176 37.037 0.00 0.00 32.13 2.29
1606 3273 2.141448 TAACTCCACACGGGGCACA 61.141 57.895 0.00 0.00 35.35 4.57
1765 3436 3.118956 ACTGACAGGACGGATTTCATCTC 60.119 47.826 7.51 0.00 0.00 2.75
1799 3470 4.711846 ACTACATGTCTGGAAGTGCTCATA 59.288 41.667 0.00 0.00 33.76 2.15
2013 3685 0.106519 AAACCCTGCAACAGAGCACT 60.107 50.000 0.00 0.00 40.11 4.40
2110 3782 3.515502 TCTGGTACTGACTCCCAATCAAG 59.484 47.826 0.00 0.00 0.00 3.02
2182 3854 3.131400 CCAACTACTACTGGCTCTTCCTC 59.869 52.174 0.00 0.00 35.26 3.71
2207 3905 2.627945 GCATAGATGTTCCGTTGGTGA 58.372 47.619 0.00 0.00 0.00 4.02
2208 3906 1.670811 GGCATAGATGTTCCGTTGGTG 59.329 52.381 0.00 0.00 0.00 4.17
2209 3907 1.559682 AGGCATAGATGTTCCGTTGGT 59.440 47.619 0.00 0.00 0.00 3.67
2210 3908 1.942657 CAGGCATAGATGTTCCGTTGG 59.057 52.381 0.00 0.00 0.00 3.77
2211 3909 2.352651 CACAGGCATAGATGTTCCGTTG 59.647 50.000 0.00 0.00 0.00 4.10
2212 3910 2.236146 TCACAGGCATAGATGTTCCGTT 59.764 45.455 0.00 0.00 0.00 4.44
2213 3911 1.831106 TCACAGGCATAGATGTTCCGT 59.169 47.619 0.00 0.00 0.00 4.69
2214 3912 2.602257 TCACAGGCATAGATGTTCCG 57.398 50.000 0.00 0.00 0.00 4.30
2215 3913 3.406764 GGATCACAGGCATAGATGTTCC 58.593 50.000 0.00 0.00 0.00 3.62
2216 3914 3.062763 CGGATCACAGGCATAGATGTTC 58.937 50.000 0.00 0.00 0.00 3.18
2217 3915 2.224378 CCGGATCACAGGCATAGATGTT 60.224 50.000 0.00 0.00 0.00 2.71
2218 3916 1.345741 CCGGATCACAGGCATAGATGT 59.654 52.381 0.00 0.00 0.00 3.06
2219 3917 1.620323 TCCGGATCACAGGCATAGATG 59.380 52.381 0.00 0.00 0.00 2.90
2220 3918 2.015456 TCCGGATCACAGGCATAGAT 57.985 50.000 0.00 0.00 0.00 1.98
2221 3919 1.620323 CATCCGGATCACAGGCATAGA 59.380 52.381 15.88 0.00 0.00 1.98
2222 3920 1.620323 TCATCCGGATCACAGGCATAG 59.380 52.381 15.88 0.00 0.00 2.23
2223 3921 1.715785 TCATCCGGATCACAGGCATA 58.284 50.000 15.88 0.00 0.00 3.14
2224 3922 0.839277 TTCATCCGGATCACAGGCAT 59.161 50.000 15.88 0.00 0.00 4.40
2225 3923 0.107703 GTTCATCCGGATCACAGGCA 60.108 55.000 15.88 0.00 0.00 4.75
2226 3924 0.179000 AGTTCATCCGGATCACAGGC 59.821 55.000 15.88 1.99 0.00 4.85
2227 3925 2.283298 CAAGTTCATCCGGATCACAGG 58.717 52.381 15.88 2.73 0.00 4.00
2228 3926 2.977914 ACAAGTTCATCCGGATCACAG 58.022 47.619 15.88 12.90 0.00 3.66
2229 3927 3.417069 AACAAGTTCATCCGGATCACA 57.583 42.857 15.88 0.00 0.00 3.58
2230 3928 4.755411 TCTAACAAGTTCATCCGGATCAC 58.245 43.478 15.88 14.43 0.00 3.06
2231 3929 5.414789 TTCTAACAAGTTCATCCGGATCA 57.585 39.130 15.88 0.00 0.00 2.92
2232 3930 6.927294 AATTCTAACAAGTTCATCCGGATC 57.073 37.500 15.88 3.34 0.00 3.36
2233 3931 8.840321 CATTAATTCTAACAAGTTCATCCGGAT 58.160 33.333 12.38 12.38 0.00 4.18
2234 3932 7.282224 CCATTAATTCTAACAAGTTCATCCGGA 59.718 37.037 6.61 6.61 0.00 5.14
2245 3943 7.841282 TGGTCAAACCCATTAATTCTAACAA 57.159 32.000 0.00 0.00 37.50 2.83
2266 3964 4.322953 GGAATTTCTGGAAATGCACATGGT 60.323 41.667 13.94 0.00 40.57 3.55
2383 4099 5.392919 CCGGATGTTGTTGATCATTGCTTTA 60.393 40.000 0.00 0.00 0.00 1.85
2391 4107 3.686916 TGTACCGGATGTTGTTGATCA 57.313 42.857 9.46 0.00 0.00 2.92
2403 4119 3.037249 GCGTGCGTTTGTACCGGA 61.037 61.111 9.46 0.00 0.00 5.14
2404 4120 4.079748 GGCGTGCGTTTGTACCGG 62.080 66.667 0.00 0.00 0.00 5.28
2418 4134 1.752310 TGCATGTATTGTGGGGGCG 60.752 57.895 0.00 0.00 0.00 6.13
2419 4135 0.969917 TGTGCATGTATTGTGGGGGC 60.970 55.000 0.00 0.00 0.00 5.80
2429 4145 1.603456 CTTGGGTGTGTGTGCATGTA 58.397 50.000 0.00 0.00 0.00 2.29
2432 4148 2.202395 GCCTTGGGTGTGTGTGCAT 61.202 57.895 0.00 0.00 0.00 3.96
2433 4149 2.832661 GCCTTGGGTGTGTGTGCA 60.833 61.111 0.00 0.00 0.00 4.57
2450 4166 1.788258 CACAGCGCCTATGTATCCTG 58.212 55.000 2.29 0.00 0.00 3.86
2468 4204 3.364441 GGATGGTGTTGCTGCGCA 61.364 61.111 10.98 10.98 36.47 6.09
2493 4229 0.325296 ATCCCCCGACTGCTCTTGTA 60.325 55.000 0.00 0.00 0.00 2.41
2501 4237 0.902531 ACAACTGTATCCCCCGACTG 59.097 55.000 0.00 0.00 0.00 3.51
2504 4240 1.276989 GTTCACAACTGTATCCCCCGA 59.723 52.381 0.00 0.00 0.00 5.14
2506 4242 2.433436 GTGTTCACAACTGTATCCCCC 58.567 52.381 0.00 0.00 0.00 5.40
2528 4264 2.762745 GGCTTTACTTCTTCACGGTGA 58.237 47.619 6.76 6.76 0.00 4.02
2530 4266 1.792006 CGGCTTTACTTCTTCACGGT 58.208 50.000 0.00 0.00 0.00 4.83
2534 4270 4.570772 GTCATATGCGGCTTTACTTCTTCA 59.429 41.667 0.00 0.00 0.00 3.02
2535 4271 4.318121 CGTCATATGCGGCTTTACTTCTTC 60.318 45.833 0.00 0.00 0.00 2.87
2543 4279 1.014352 GGTTCGTCATATGCGGCTTT 58.986 50.000 16.01 0.00 0.00 3.51
2558 4294 1.026718 CATCTTGGAGCCCACGGTTC 61.027 60.000 0.00 0.00 30.78 3.62
2562 4298 1.746615 CACCATCTTGGAGCCCACG 60.747 63.158 0.00 0.00 40.96 4.94
2563 4299 2.048603 GCACCATCTTGGAGCCCAC 61.049 63.158 4.81 0.00 46.41 4.61
2564 4300 2.356278 GCACCATCTTGGAGCCCA 59.644 61.111 4.81 0.00 46.41 5.36
2605 4341 2.509336 GATCAGACGGTGGCGGTG 60.509 66.667 0.00 0.00 0.00 4.94
2606 4342 3.771160 GGATCAGACGGTGGCGGT 61.771 66.667 0.00 0.00 0.00 5.68
2608 4344 2.100631 GTTGGATCAGACGGTGGCG 61.101 63.158 0.00 0.00 0.00 5.69
2609 4345 2.100631 CGTTGGATCAGACGGTGGC 61.101 63.158 11.07 0.00 35.74 5.01
2624 4362 4.319177 CTCAAGGGAAAACTCTGATCGTT 58.681 43.478 0.00 0.00 0.00 3.85
2626 4364 2.675348 GCTCAAGGGAAAACTCTGATCG 59.325 50.000 0.00 0.00 0.00 3.69
2643 4381 1.228094 TTGCCGGTCATGTTGCTCA 60.228 52.632 1.90 0.00 0.00 4.26
2650 4388 2.456119 GCTCTCGTTGCCGGTCATG 61.456 63.158 1.90 0.00 33.95 3.07
2652 4390 4.373116 GGCTCTCGTTGCCGGTCA 62.373 66.667 1.90 0.00 41.03 4.02
2714 4452 2.169832 TCTGCTCTTTCTTTGGACGG 57.830 50.000 0.00 0.00 0.00 4.79
2716 4454 5.917447 GTGAAAATCTGCTCTTTCTTTGGAC 59.083 40.000 0.00 0.00 33.55 4.02
2720 4458 4.281941 GGGGTGAAAATCTGCTCTTTCTTT 59.718 41.667 0.00 0.00 33.55 2.52
2725 4463 1.614317 CCGGGGTGAAAATCTGCTCTT 60.614 52.381 0.00 0.00 0.00 2.85
2730 4468 0.684153 ATGGCCGGGGTGAAAATCTG 60.684 55.000 2.18 0.00 0.00 2.90
2733 4471 0.970427 GTGATGGCCGGGGTGAAAAT 60.970 55.000 2.18 0.00 0.00 1.82
2771 4509 4.016706 GCGTGGTAGCTGGGGTGT 62.017 66.667 0.00 0.00 0.00 4.16
2812 4550 0.673644 ACGTATCACTTGGTGCTGCC 60.674 55.000 0.00 0.00 32.98 4.85
2830 4568 9.106070 ACCAAAAATTATAGATACGTTGGAGAC 57.894 33.333 0.00 0.00 38.11 3.36
2831 4569 9.675464 AACCAAAAATTATAGATACGTTGGAGA 57.325 29.630 0.00 0.00 38.11 3.71
2832 4570 9.716507 CAACCAAAAATTATAGATACGTTGGAG 57.283 33.333 0.00 0.00 38.11 3.86
2833 4571 9.233649 ACAACCAAAAATTATAGATACGTTGGA 57.766 29.630 0.00 0.00 38.11 3.53
2834 4572 9.849166 AACAACCAAAAATTATAGATACGTTGG 57.151 29.630 0.00 0.00 40.10 3.77
2837 4575 9.233649 TGGAACAACCAAAAATTATAGATACGT 57.766 29.630 0.00 0.00 46.75 3.57
2860 4598 9.234827 CCAAGAATGATAATATAACAGCATGGA 57.765 33.333 0.00 0.00 43.62 3.41
2861 4599 9.234827 TCCAAGAATGATAATATAACAGCATGG 57.765 33.333 0.00 0.00 43.62 3.66
2864 4602 9.797642 ACATCCAAGAATGATAATATAACAGCA 57.202 29.630 0.00 0.00 0.00 4.41
2874 4612 9.958180 TGACTCTAAAACATCCAAGAATGATAA 57.042 29.630 0.00 0.00 0.00 1.75
2876 4614 9.471702 AATGACTCTAAAACATCCAAGAATGAT 57.528 29.630 0.00 0.00 0.00 2.45
2877 4615 8.868522 AATGACTCTAAAACATCCAAGAATGA 57.131 30.769 0.00 0.00 0.00 2.57
2878 4616 9.918630 AAAATGACTCTAAAACATCCAAGAATG 57.081 29.630 0.00 0.00 0.00 2.67
2914 4652 9.542462 GCACTATGTCAATAGGTTAGTATCAAA 57.458 33.333 0.00 0.00 40.23 2.69
2915 4653 8.148351 GGCACTATGTCAATAGGTTAGTATCAA 58.852 37.037 0.00 0.00 40.23 2.57
2916 4654 7.256190 GGGCACTATGTCAATAGGTTAGTATCA 60.256 40.741 0.00 0.00 40.23 2.15
2917 4655 7.097834 GGGCACTATGTCAATAGGTTAGTATC 58.902 42.308 0.00 0.00 40.23 2.24
2918 4656 6.557253 TGGGCACTATGTCAATAGGTTAGTAT 59.443 38.462 0.00 0.00 40.23 2.12
2919 4657 5.900699 TGGGCACTATGTCAATAGGTTAGTA 59.099 40.000 0.00 0.00 40.23 1.82
2920 4658 4.719773 TGGGCACTATGTCAATAGGTTAGT 59.280 41.667 0.00 0.00 40.23 2.24
2921 4659 5.163301 ACTGGGCACTATGTCAATAGGTTAG 60.163 44.000 0.00 0.00 40.23 2.34
2922 4660 4.719773 ACTGGGCACTATGTCAATAGGTTA 59.280 41.667 0.00 0.00 40.23 2.85
2923 4661 3.523564 ACTGGGCACTATGTCAATAGGTT 59.476 43.478 0.00 0.00 40.23 3.50
2924 4662 3.115390 ACTGGGCACTATGTCAATAGGT 58.885 45.455 0.00 0.00 40.23 3.08
2925 4663 3.118261 ACACTGGGCACTATGTCAATAGG 60.118 47.826 0.00 0.00 40.23 2.57
2926 4664 4.122776 GACACTGGGCACTATGTCAATAG 58.877 47.826 15.68 0.00 40.95 1.73
2927 4665 3.517500 TGACACTGGGCACTATGTCAATA 59.482 43.478 19.55 1.55 46.30 1.90
2928 4666 2.305635 TGACACTGGGCACTATGTCAAT 59.694 45.455 19.55 0.00 46.30 2.57
2929 4667 1.696884 TGACACTGGGCACTATGTCAA 59.303 47.619 19.55 7.12 46.30 3.18
2930 4668 1.276138 CTGACACTGGGCACTATGTCA 59.724 52.381 20.26 20.26 46.92 3.58
2931 4669 1.276421 ACTGACACTGGGCACTATGTC 59.724 52.381 14.21 14.21 41.51 3.06
2932 4670 1.352083 ACTGACACTGGGCACTATGT 58.648 50.000 0.00 0.00 0.00 2.29
2933 4671 2.079158 CAACTGACACTGGGCACTATG 58.921 52.381 0.00 0.00 0.00 2.23
2934 4672 1.611673 GCAACTGACACTGGGCACTAT 60.612 52.381 0.00 0.00 0.00 2.12
2935 4673 0.250295 GCAACTGACACTGGGCACTA 60.250 55.000 0.00 0.00 0.00 2.74
2936 4674 1.526917 GCAACTGACACTGGGCACT 60.527 57.895 0.00 0.00 0.00 4.40
2937 4675 1.526917 AGCAACTGACACTGGGCAC 60.527 57.895 0.00 0.00 0.00 5.01
2938 4676 1.526686 CAGCAACTGACACTGGGCA 60.527 57.895 0.00 0.00 32.44 5.36
2939 4677 1.103398 AACAGCAACTGACACTGGGC 61.103 55.000 0.78 0.00 35.70 5.36
2940 4678 1.392589 AAACAGCAACTGACACTGGG 58.607 50.000 0.78 0.00 35.70 4.45
2941 4679 2.684881 AGAAAACAGCAACTGACACTGG 59.315 45.455 0.78 0.00 35.70 4.00
2942 4680 3.688272 CAGAAAACAGCAACTGACACTG 58.312 45.455 0.78 0.00 35.18 3.66
2943 4681 2.098117 GCAGAAAACAGCAACTGACACT 59.902 45.455 0.78 0.00 35.18 3.55
2944 4682 2.159393 TGCAGAAAACAGCAACTGACAC 60.159 45.455 0.78 0.00 37.90 3.67
2945 4683 2.090760 TGCAGAAAACAGCAACTGACA 58.909 42.857 0.78 0.00 37.90 3.58
2946 4684 2.849880 TGCAGAAAACAGCAACTGAC 57.150 45.000 0.78 0.00 37.90 3.51
2947 4685 2.689471 ACATGCAGAAAACAGCAACTGA 59.311 40.909 0.78 0.00 44.88 3.41
2948 4686 3.088194 ACATGCAGAAAACAGCAACTG 57.912 42.857 0.00 0.00 44.88 3.16
2949 4687 3.806625 AACATGCAGAAAACAGCAACT 57.193 38.095 0.00 0.00 44.88 3.16
2950 4688 4.863152 AAAACATGCAGAAAACAGCAAC 57.137 36.364 0.00 0.00 44.88 4.17
2951 4689 5.871524 TGTAAAAACATGCAGAAAACAGCAA 59.128 32.000 0.00 0.00 44.88 3.91
2952 4690 5.414360 TGTAAAAACATGCAGAAAACAGCA 58.586 33.333 0.00 0.00 45.92 4.41
2953 4691 5.964887 TGTAAAAACATGCAGAAAACAGC 57.035 34.783 0.00 0.00 0.00 4.40
2954 4692 6.614162 GCGATGTAAAAACATGCAGAAAACAG 60.614 38.462 0.00 0.00 0.00 3.16
2955 4693 5.174761 GCGATGTAAAAACATGCAGAAAACA 59.825 36.000 0.00 0.00 0.00 2.83
2956 4694 5.174761 TGCGATGTAAAAACATGCAGAAAAC 59.825 36.000 0.00 0.00 33.05 2.43
2957 4695 5.284864 TGCGATGTAAAAACATGCAGAAAA 58.715 33.333 0.00 0.00 33.05 2.29
2958 4696 4.864633 TGCGATGTAAAAACATGCAGAAA 58.135 34.783 0.00 0.00 33.05 2.52
2959 4697 4.475028 CTGCGATGTAAAAACATGCAGAA 58.525 39.130 23.50 3.09 44.80 3.02
2960 4698 3.119884 CCTGCGATGTAAAAACATGCAGA 60.120 43.478 26.43 7.82 44.80 4.26
2961 4699 3.119884 TCCTGCGATGTAAAAACATGCAG 60.120 43.478 22.23 22.23 43.48 4.41
2962 4700 2.816672 TCCTGCGATGTAAAAACATGCA 59.183 40.909 12.00 12.00 35.03 3.96
2963 4701 3.485947 TCCTGCGATGTAAAAACATGC 57.514 42.857 0.00 1.75 0.00 4.06
2964 4702 6.092092 TGATTTCCTGCGATGTAAAAACATG 58.908 36.000 0.00 0.00 0.00 3.21
2965 4703 6.266168 TGATTTCCTGCGATGTAAAAACAT 57.734 33.333 0.00 0.00 0.00 2.71
2966 4704 5.697473 TGATTTCCTGCGATGTAAAAACA 57.303 34.783 0.00 0.00 0.00 2.83
2967 4705 8.856490 ATATTGATTTCCTGCGATGTAAAAAC 57.144 30.769 0.00 0.00 0.00 2.43
2968 4706 8.681806 TGATATTGATTTCCTGCGATGTAAAAA 58.318 29.630 0.00 0.00 0.00 1.94
2969 4707 8.219546 TGATATTGATTTCCTGCGATGTAAAA 57.780 30.769 0.00 0.00 0.00 1.52
2970 4708 7.800155 TGATATTGATTTCCTGCGATGTAAA 57.200 32.000 0.00 0.00 0.00 2.01
2971 4709 7.800155 TTGATATTGATTTCCTGCGATGTAA 57.200 32.000 0.00 0.00 0.00 2.41
2972 4710 7.518211 CGTTTGATATTGATTTCCTGCGATGTA 60.518 37.037 0.00 0.00 0.00 2.29
2973 4711 6.498304 GTTTGATATTGATTTCCTGCGATGT 58.502 36.000 0.00 0.00 0.00 3.06
2974 4712 5.622448 CGTTTGATATTGATTTCCTGCGATG 59.378 40.000 0.00 0.00 0.00 3.84
2975 4713 5.277974 CCGTTTGATATTGATTTCCTGCGAT 60.278 40.000 0.00 0.00 0.00 4.58
2976 4714 4.035091 CCGTTTGATATTGATTTCCTGCGA 59.965 41.667 0.00 0.00 0.00 5.10
2977 4715 4.035091 TCCGTTTGATATTGATTTCCTGCG 59.965 41.667 0.00 0.00 0.00 5.18
2978 4716 5.066505 ACTCCGTTTGATATTGATTTCCTGC 59.933 40.000 0.00 0.00 0.00 4.85
2979 4717 6.238484 GGACTCCGTTTGATATTGATTTCCTG 60.238 42.308 0.00 0.00 0.00 3.86
2980 4718 5.823045 GGACTCCGTTTGATATTGATTTCCT 59.177 40.000 0.00 0.00 0.00 3.36
2981 4719 5.588648 TGGACTCCGTTTGATATTGATTTCC 59.411 40.000 0.00 0.00 0.00 3.13
2982 4720 6.677781 TGGACTCCGTTTGATATTGATTTC 57.322 37.500 0.00 0.00 0.00 2.17
2983 4721 7.312899 GTTTGGACTCCGTTTGATATTGATTT 58.687 34.615 0.00 0.00 0.00 2.17
2984 4722 6.403200 CGTTTGGACTCCGTTTGATATTGATT 60.403 38.462 0.00 0.00 0.00 2.57
2985 4723 5.064707 CGTTTGGACTCCGTTTGATATTGAT 59.935 40.000 0.00 0.00 0.00 2.57
2986 4724 4.390603 CGTTTGGACTCCGTTTGATATTGA 59.609 41.667 0.00 0.00 0.00 2.57
2987 4725 4.647964 CGTTTGGACTCCGTTTGATATTG 58.352 43.478 0.00 0.00 0.00 1.90
2988 4726 3.126343 GCGTTTGGACTCCGTTTGATATT 59.874 43.478 0.00 0.00 0.00 1.28
2989 4727 2.676342 GCGTTTGGACTCCGTTTGATAT 59.324 45.455 0.00 0.00 0.00 1.63
2990 4728 2.070783 GCGTTTGGACTCCGTTTGATA 58.929 47.619 0.00 0.00 0.00 2.15
2991 4729 0.872388 GCGTTTGGACTCCGTTTGAT 59.128 50.000 0.00 0.00 0.00 2.57
2992 4730 0.462225 TGCGTTTGGACTCCGTTTGA 60.462 50.000 0.00 0.00 0.00 2.69
2993 4731 0.378962 TTGCGTTTGGACTCCGTTTG 59.621 50.000 0.00 0.00 0.00 2.93
2994 4732 0.379316 GTTGCGTTTGGACTCCGTTT 59.621 50.000 0.00 0.00 0.00 3.60
2995 4733 0.745128 TGTTGCGTTTGGACTCCGTT 60.745 50.000 0.00 0.00 0.00 4.44
2996 4734 0.745128 TTGTTGCGTTTGGACTCCGT 60.745 50.000 0.00 0.00 0.00 4.69
2997 4735 0.378962 TTTGTTGCGTTTGGACTCCG 59.621 50.000 0.00 0.00 0.00 4.63
2998 4736 2.159296 AGTTTTGTTGCGTTTGGACTCC 60.159 45.455 0.00 0.00 0.00 3.85
2999 4737 3.145212 AGTTTTGTTGCGTTTGGACTC 57.855 42.857 0.00 0.00 0.00 3.36
3000 4738 3.586100 AAGTTTTGTTGCGTTTGGACT 57.414 38.095 0.00 0.00 0.00 3.85
3001 4739 4.655440 AAAAGTTTTGTTGCGTTTGGAC 57.345 36.364 0.00 0.00 0.00 4.02
3002 4740 4.750098 TCAAAAAGTTTTGTTGCGTTTGGA 59.250 33.333 14.45 0.00 45.77 3.53
3003 4741 5.023551 TCAAAAAGTTTTGTTGCGTTTGG 57.976 34.783 14.45 0.00 45.77 3.28
3004 4742 5.078745 CCTCAAAAAGTTTTGTTGCGTTTG 58.921 37.500 14.45 0.00 45.77 2.93
3005 4743 4.991687 TCCTCAAAAAGTTTTGTTGCGTTT 59.008 33.333 14.45 0.00 45.77 3.60
3006 4744 4.561105 TCCTCAAAAAGTTTTGTTGCGTT 58.439 34.783 14.45 0.00 45.77 4.84
3007 4745 4.181309 TCCTCAAAAAGTTTTGTTGCGT 57.819 36.364 14.45 0.00 45.77 5.24
3008 4746 5.717038 AATCCTCAAAAAGTTTTGTTGCG 57.283 34.783 14.45 0.00 45.77 4.85
3031 4769 3.243359 AGATGTCTTCTGGCCCAAAAA 57.757 42.857 0.00 0.00 31.79 1.94
3032 4770 2.978156 AGATGTCTTCTGGCCCAAAA 57.022 45.000 0.00 0.00 31.79 2.44
3033 4771 2.912956 ACTAGATGTCTTCTGGCCCAAA 59.087 45.455 0.00 0.00 36.44 3.28
3034 4772 2.237143 CACTAGATGTCTTCTGGCCCAA 59.763 50.000 0.00 0.00 36.44 4.12
3035 4773 1.833630 CACTAGATGTCTTCTGGCCCA 59.166 52.381 0.00 0.00 36.44 5.36
3036 4774 1.139853 CCACTAGATGTCTTCTGGCCC 59.860 57.143 0.00 0.00 36.44 5.80
3037 4775 1.139853 CCCACTAGATGTCTTCTGGCC 59.860 57.143 0.00 0.00 36.44 5.36
3038 4776 1.474143 GCCCACTAGATGTCTTCTGGC 60.474 57.143 0.00 0.00 36.44 4.85
3039 4777 1.139853 GGCCCACTAGATGTCTTCTGG 59.860 57.143 0.00 0.00 38.82 3.86
3040 4778 1.833630 TGGCCCACTAGATGTCTTCTG 59.166 52.381 0.00 0.00 35.79 3.02
3041 4779 2.114616 CTGGCCCACTAGATGTCTTCT 58.885 52.381 0.00 0.00 38.57 2.85
3042 4780 2.111384 TCTGGCCCACTAGATGTCTTC 58.889 52.381 0.00 0.00 0.00 2.87
3043 4781 2.254152 TCTGGCCCACTAGATGTCTT 57.746 50.000 0.00 0.00 0.00 3.01
3044 4782 2.254152 TTCTGGCCCACTAGATGTCT 57.746 50.000 0.00 0.00 0.00 3.41
3045 4783 3.274288 CTTTTCTGGCCCACTAGATGTC 58.726 50.000 0.00 0.00 0.00 3.06
3046 4784 2.619074 GCTTTTCTGGCCCACTAGATGT 60.619 50.000 0.00 0.00 0.00 3.06
3047 4785 2.019984 GCTTTTCTGGCCCACTAGATG 58.980 52.381 0.00 0.00 0.00 2.90
3048 4786 1.635487 TGCTTTTCTGGCCCACTAGAT 59.365 47.619 0.00 0.00 0.00 1.98
3049 4787 1.064003 TGCTTTTCTGGCCCACTAGA 58.936 50.000 0.00 0.00 0.00 2.43
3050 4788 1.168714 GTGCTTTTCTGGCCCACTAG 58.831 55.000 0.00 0.00 0.00 2.57
3051 4789 0.251165 GGTGCTTTTCTGGCCCACTA 60.251 55.000 0.00 0.00 0.00 2.74
3052 4790 1.531602 GGTGCTTTTCTGGCCCACT 60.532 57.895 0.00 0.00 0.00 4.00
3053 4791 1.531602 AGGTGCTTTTCTGGCCCAC 60.532 57.895 0.00 0.00 0.00 4.61
3054 4792 1.531365 CAGGTGCTTTTCTGGCCCA 60.531 57.895 0.00 0.00 0.00 5.36
3055 4793 2.278330 CCAGGTGCTTTTCTGGCCC 61.278 63.158 0.00 0.00 43.22 5.80
3056 4794 2.278330 CCCAGGTGCTTTTCTGGCC 61.278 63.158 0.00 0.00 46.79 5.36
3057 4795 2.278330 CCCCAGGTGCTTTTCTGGC 61.278 63.158 3.99 0.00 46.79 4.85
3059 4797 4.102113 CCCCCAGGTGCTTTTCTG 57.898 61.111 0.00 0.00 0.00 3.02
3072 4810 4.779733 TCTCCTCGGAGCACCCCC 62.780 72.222 8.11 0.00 41.71 5.40
3073 4811 3.151022 CTCTCCTCGGAGCACCCC 61.151 72.222 8.11 0.00 41.71 4.95
3079 4817 1.104577 GGGTAGTGCTCTCCTCGGAG 61.105 65.000 6.63 6.63 43.21 4.63
3080 4818 1.076923 GGGTAGTGCTCTCCTCGGA 60.077 63.158 0.00 0.00 0.00 4.55
3081 4819 1.379977 TGGGTAGTGCTCTCCTCGG 60.380 63.158 0.00 0.00 0.00 4.63
3082 4820 1.668101 GGTGGGTAGTGCTCTCCTCG 61.668 65.000 0.00 0.00 0.00 4.63
3083 4821 0.614979 TGGTGGGTAGTGCTCTCCTC 60.615 60.000 0.75 0.00 32.56 3.71
3084 4822 0.178903 TTGGTGGGTAGTGCTCTCCT 60.179 55.000 0.75 0.00 32.56 3.69
3085 4823 0.250513 CTTGGTGGGTAGTGCTCTCC 59.749 60.000 0.00 0.00 0.00 3.71
3086 4824 0.250513 CCTTGGTGGGTAGTGCTCTC 59.749 60.000 0.00 0.00 0.00 3.20
3087 4825 1.842381 GCCTTGGTGGGTAGTGCTCT 61.842 60.000 0.00 0.00 36.00 4.09
3088 4826 1.377333 GCCTTGGTGGGTAGTGCTC 60.377 63.158 0.00 0.00 36.00 4.26
3089 4827 2.757077 GCCTTGGTGGGTAGTGCT 59.243 61.111 0.00 0.00 36.00 4.40
3090 4828 2.746277 CGCCTTGGTGGGTAGTGC 60.746 66.667 0.00 0.00 36.00 4.40
3091 4829 2.746277 GCGCCTTGGTGGGTAGTG 60.746 66.667 0.00 0.00 36.00 2.74
3092 4830 4.388499 CGCGCCTTGGTGGGTAGT 62.388 66.667 0.00 0.00 36.00 2.73
3156 4894 2.907179 AAAGAGGCGGTTCAGGGGG 61.907 63.158 0.00 0.00 0.00 5.40
3157 4895 1.675641 CAAAGAGGCGGTTCAGGGG 60.676 63.158 0.00 0.00 0.00 4.79
3158 4896 2.335712 GCAAAGAGGCGGTTCAGGG 61.336 63.158 0.00 0.00 0.00 4.45
3159 4897 0.890996 AAGCAAAGAGGCGGTTCAGG 60.891 55.000 0.00 0.00 39.27 3.86
3160 4898 0.954452 AAAGCAAAGAGGCGGTTCAG 59.046 50.000 0.00 0.00 39.27 3.02
3161 4899 2.264005 TAAAGCAAAGAGGCGGTTCA 57.736 45.000 0.00 0.00 39.27 3.18
3162 4900 4.957759 TTATAAAGCAAAGAGGCGGTTC 57.042 40.909 0.00 0.00 39.27 3.62
3163 4901 5.914898 ATTTATAAAGCAAAGAGGCGGTT 57.085 34.783 3.94 0.00 39.27 4.44
3164 4902 5.298527 GGTATTTATAAAGCAAAGAGGCGGT 59.701 40.000 3.94 0.00 39.27 5.68
3165 4903 5.278315 GGGTATTTATAAAGCAAAGAGGCGG 60.278 44.000 3.94 0.00 39.27 6.13
3166 4904 5.278315 GGGGTATTTATAAAGCAAAGAGGCG 60.278 44.000 3.94 0.00 39.27 5.52
3167 4905 5.596772 TGGGGTATTTATAAAGCAAAGAGGC 59.403 40.000 3.94 0.00 0.00 4.70
3168 4906 7.654022 TTGGGGTATTTATAAAGCAAAGAGG 57.346 36.000 3.94 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.