Multiple sequence alignment - TraesCS2B01G266700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G266700 chr2B 100.000 5748 0 0 1 5748 359315944 359310197 0.000000e+00 10615.0
1 TraesCS2B01G266700 chr2B 95.646 666 21 4 5091 5748 197239732 197240397 0.000000e+00 1062.0
2 TraesCS2B01G266700 chr2B 98.305 531 9 0 1 531 373108666 373109196 0.000000e+00 931.0
3 TraesCS2B01G266700 chr2B 100.000 45 0 0 94 138 359315806 359315762 3.690000e-12 84.2
4 TraesCS2B01G266700 chr2B 100.000 45 0 0 139 183 359315851 359315807 3.690000e-12 84.2
5 TraesCS2B01G266700 chr2B 100.000 45 0 0 139 183 373108759 373108803 3.690000e-12 84.2
6 TraesCS2B01G266700 chr2B 85.714 70 10 0 462 531 454847613 454847682 2.220000e-09 75.0
7 TraesCS2B01G266700 chr2A 96.290 3100 83 14 538 3632 430955302 430952230 0.000000e+00 5059.0
8 TraesCS2B01G266700 chr2A 94.475 1267 48 8 3736 4995 430952231 430950980 0.000000e+00 1932.0
9 TraesCS2B01G266700 chr2A 89.655 116 10 1 4981 5094 430950829 430950714 4.640000e-31 147.0
10 TraesCS2B01G266700 chr2D 97.138 2900 69 4 741 3630 308982221 308985116 0.000000e+00 4883.0
11 TraesCS2B01G266700 chr2D 95.364 1359 52 8 3741 5094 308985127 308986479 0.000000e+00 2150.0
12 TraesCS2B01G266700 chr2D 88.532 218 14 5 532 745 308977542 308977752 2.660000e-63 254.0
13 TraesCS2B01G266700 chr2D 86.275 153 19 2 3938 4090 446315932 446315782 1.280000e-36 165.0
14 TraesCS2B01G266700 chr5D 79.543 2449 468 32 1156 3589 479579955 479582385 0.000000e+00 1716.0
15 TraesCS2B01G266700 chr5D 81.771 192 21 13 3923 4110 427013519 427013338 1.290000e-31 148.0
16 TraesCS2B01G266700 chr5D 81.771 192 21 13 3923 4110 427072981 427072800 1.290000e-31 148.0
17 TraesCS2B01G266700 chr7B 96.483 654 19 2 5098 5748 393402580 393401928 0.000000e+00 1077.0
18 TraesCS2B01G266700 chr7B 96.073 662 22 3 5090 5748 565090475 565089815 0.000000e+00 1075.0
19 TraesCS2B01G266700 chr7B 96.061 660 23 1 5092 5748 341857623 341856964 0.000000e+00 1072.0
20 TraesCS2B01G266700 chr7B 95.455 660 27 1 5092 5748 298614071 298614730 0.000000e+00 1050.0
21 TraesCS2B01G266700 chr7B 95.045 666 25 5 5091 5748 527363722 527364387 0.000000e+00 1040.0
22 TraesCS2B01G266700 chr7B 94.529 329 18 0 204 532 700631524 700631196 5.140000e-140 508.0
23 TraesCS2B01G266700 chr6A 95.159 661 29 1 5091 5748 249294434 249295094 0.000000e+00 1040.0
24 TraesCS2B01G266700 chr6A 82.418 182 29 3 3934 4114 7123778 7123957 7.710000e-34 156.0
25 TraesCS2B01G266700 chr4A 95.159 661 28 2 5091 5748 13271008 13270349 0.000000e+00 1040.0
26 TraesCS2B01G266700 chr6B 94.895 666 28 2 5089 5748 366630429 366629764 0.000000e+00 1037.0
27 TraesCS2B01G266700 chr6B 97.222 36 0 1 39 74 86439771 86439805 6.220000e-05 60.2
28 TraesCS2B01G266700 chr5B 98.311 533 9 0 1 533 577238866 577239398 0.000000e+00 935.0
29 TraesCS2B01G266700 chr5B 96.183 393 15 0 139 531 342182099 342181707 1.350000e-180 643.0
30 TraesCS2B01G266700 chr5B 94.884 215 11 0 139 353 118953590 118953804 2.570000e-88 337.0
31 TraesCS2B01G266700 chr5B 97.396 192 5 0 340 531 118955977 118956168 1.540000e-85 327.0
32 TraesCS2B01G266700 chr5B 99.270 137 1 0 2 138 342182191 342182055 1.240000e-61 248.0
33 TraesCS2B01G266700 chr5B 96.094 128 5 0 11 138 118953507 118953634 5.840000e-50 209.0
34 TraesCS2B01G266700 chr5B 93.233 133 6 3 3620 3752 678315002 678315131 5.880000e-45 193.0
35 TraesCS2B01G266700 chr5B 91.304 138 10 2 3629 3765 134582562 134582426 2.730000e-43 187.0
36 TraesCS2B01G266700 chr5B 100.000 45 0 0 94 138 577239004 577239048 3.690000e-12 84.2
37 TraesCS2B01G266700 chr5B 97.727 44 1 0 139 182 577238959 577239002 6.180000e-10 76.8
38 TraesCS2B01G266700 chr7D 96.709 395 12 1 139 532 10632903 10633297 0.000000e+00 656.0
39 TraesCS2B01G266700 chr7D 100.000 122 0 0 17 138 10632826 10632947 5.790000e-55 226.0
40 TraesCS2B01G266700 chr6D 95.718 397 16 1 137 532 17968029 17967633 6.280000e-179 638.0
41 TraesCS2B01G266700 chr6D 99.180 122 1 0 17 138 17968103 17967982 2.700000e-53 220.0
42 TraesCS2B01G266700 chr6D 87.586 145 14 3 3949 4092 254240422 254240281 1.280000e-36 165.0
43 TraesCS2B01G266700 chr6D 82.796 186 29 3 3930 4114 163323787 163323970 4.610000e-36 163.0
44 TraesCS2B01G266700 chr6D 85.185 162 20 4 3932 4092 218127524 218127366 4.610000e-36 163.0
45 TraesCS2B01G266700 chr4B 93.130 393 11 4 139 531 535341005 535340629 3.890000e-156 562.0
46 TraesCS2B01G266700 chr4B 98.551 138 2 0 1 138 535341098 535340961 1.600000e-60 244.0
47 TraesCS2B01G266700 chr4B 93.798 129 6 2 3622 3750 646113938 646113812 5.880000e-45 193.0
48 TraesCS2B01G266700 chr3B 96.667 120 3 1 3629 3748 577429314 577429196 1.260000e-46 198.0
49 TraesCS2B01G266700 chr1B 95.200 125 4 2 3630 3754 604145215 604145093 4.540000e-46 196.0
50 TraesCS2B01G266700 chr1B 95.868 121 2 3 3629 3748 491705797 491705679 5.880000e-45 193.0
51 TraesCS2B01G266700 chr1B 91.549 142 7 5 3619 3758 8679420 8679558 2.110000e-44 191.0
52 TraesCS2B01G266700 chr1B 90.141 142 9 4 3622 3758 535009782 535009923 4.580000e-41 180.0
53 TraesCS2B01G266700 chr1A 95.902 122 4 1 3624 3745 403636435 403636555 4.540000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G266700 chr2B 359310197 359315944 5747 True 3594.466667 10615 100.000000 1 5748 3 chr2B.!!$R1 5747
1 TraesCS2B01G266700 chr2B 197239732 197240397 665 False 1062.000000 1062 95.646000 5091 5748 1 chr2B.!!$F1 657
2 TraesCS2B01G266700 chr2B 373108666 373109196 530 False 507.600000 931 99.152500 1 531 2 chr2B.!!$F3 530
3 TraesCS2B01G266700 chr2A 430950714 430955302 4588 True 2379.333333 5059 93.473333 538 5094 3 chr2A.!!$R1 4556
4 TraesCS2B01G266700 chr2D 308982221 308986479 4258 False 3516.500000 4883 96.251000 741 5094 2 chr2D.!!$F2 4353
5 TraesCS2B01G266700 chr5D 479579955 479582385 2430 False 1716.000000 1716 79.543000 1156 3589 1 chr5D.!!$F1 2433
6 TraesCS2B01G266700 chr7B 393401928 393402580 652 True 1077.000000 1077 96.483000 5098 5748 1 chr7B.!!$R2 650
7 TraesCS2B01G266700 chr7B 565089815 565090475 660 True 1075.000000 1075 96.073000 5090 5748 1 chr7B.!!$R3 658
8 TraesCS2B01G266700 chr7B 341856964 341857623 659 True 1072.000000 1072 96.061000 5092 5748 1 chr7B.!!$R1 656
9 TraesCS2B01G266700 chr7B 298614071 298614730 659 False 1050.000000 1050 95.455000 5092 5748 1 chr7B.!!$F1 656
10 TraesCS2B01G266700 chr7B 527363722 527364387 665 False 1040.000000 1040 95.045000 5091 5748 1 chr7B.!!$F2 657
11 TraesCS2B01G266700 chr6A 249294434 249295094 660 False 1040.000000 1040 95.159000 5091 5748 1 chr6A.!!$F2 657
12 TraesCS2B01G266700 chr4A 13270349 13271008 659 True 1040.000000 1040 95.159000 5091 5748 1 chr4A.!!$R1 657
13 TraesCS2B01G266700 chr6B 366629764 366630429 665 True 1037.000000 1037 94.895000 5089 5748 1 chr6B.!!$R1 659
14 TraesCS2B01G266700 chr5B 577238866 577239398 532 False 365.333333 935 98.679333 1 533 3 chr5B.!!$F3 532
15 TraesCS2B01G266700 chr5B 118953507 118956168 2661 False 291.000000 337 96.124667 11 531 3 chr5B.!!$F2 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 291 0.111639 GGCACCCAAGTACCCTTTCA 59.888 55.0 0.00 0.00 0.0 2.69 F
741 2931 0.322816 ATTCAAGCGGGCATGTCACT 60.323 50.0 0.00 0.00 0.0 3.41 F
746 2936 0.324943 AGCGGGCATGTCACTTTAGT 59.675 50.0 0.00 0.00 0.0 2.24 F
957 3157 0.610687 CACACTCCCCTCTTGACTCC 59.389 60.0 0.00 0.00 0.0 3.85 F
2489 4689 0.759436 ATACCGCCGGAGATTGGACT 60.759 55.0 11.71 0.00 0.0 3.85 F
3646 5846 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.0 13.34 13.34 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2160 4360 0.391597 TTGGACCGAAGAGCGAGTTT 59.608 50.000 0.00 0.0 44.57 2.66 R
2268 4468 1.522580 GGTCAGATTCGGCAGCTCC 60.523 63.158 0.00 0.0 0.00 4.70 R
2397 4597 2.495866 CCAATGGATGCCGGCAAC 59.504 61.111 36.33 31.4 0.00 4.17 R
2876 5076 2.299013 GACAGTCCACCATGAGTGTGTA 59.701 50.000 6.26 0.0 46.31 2.90 R
4339 6546 1.272554 CCCCTACCGGCTTCTTTCCT 61.273 60.000 0.00 0.0 0.00 3.36 R
5342 7723 0.108186 TCTCGACGACCGCTTACCTA 60.108 55.000 0.00 0.0 38.37 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
290 291 0.111639 GGCACCCAAGTACCCTTTCA 59.888 55.000 0.00 0.00 0.00 2.69
332 333 3.115892 GTTGACGGCGGCATTCGA 61.116 61.111 19.81 0.00 42.43 3.71
440 2627 2.055838 GTACTCGACGTCAATGCACAA 58.944 47.619 17.16 0.00 0.00 3.33
533 2720 3.367743 ACCGTAGCCGTTCTCGCA 61.368 61.111 0.00 0.00 35.54 5.10
534 2721 2.579787 CCGTAGCCGTTCTCGCAG 60.580 66.667 0.00 0.00 35.54 5.18
535 2722 2.483745 CGTAGCCGTTCTCGCAGA 59.516 61.111 0.00 0.00 35.54 4.26
536 2723 1.154093 CGTAGCCGTTCTCGCAGAA 60.154 57.895 0.00 0.00 34.09 3.02
543 2730 2.809446 CCGTTCTCGCAGAATACATGA 58.191 47.619 0.00 0.00 36.50 3.07
561 2748 6.915544 ACATGACTATTACAGAAGCATGTG 57.084 37.500 0.00 0.00 40.27 3.21
564 2751 7.607607 ACATGACTATTACAGAAGCATGTGAAA 59.392 33.333 0.00 0.00 40.27 2.69
565 2752 7.977789 TGACTATTACAGAAGCATGTGAAAA 57.022 32.000 0.00 0.00 34.56 2.29
582 2769 8.610896 CATGTGAAAAATCAGTTTGGCTAAAAA 58.389 29.630 0.00 0.00 0.00 1.94
606 2793 8.891671 AAAATTGTATGCTGAACTTTGTGAAT 57.108 26.923 0.00 0.00 0.00 2.57
607 2794 8.524870 AAATTGTATGCTGAACTTTGTGAATC 57.475 30.769 0.00 0.00 0.00 2.52
609 2796 6.882610 TGTATGCTGAACTTTGTGAATCTT 57.117 33.333 0.00 0.00 0.00 2.40
610 2797 7.275888 TGTATGCTGAACTTTGTGAATCTTT 57.724 32.000 0.00 0.00 0.00 2.52
611 2798 7.715657 TGTATGCTGAACTTTGTGAATCTTTT 58.284 30.769 0.00 0.00 0.00 2.27
613 2800 7.704789 ATGCTGAACTTTGTGAATCTTTTTC 57.295 32.000 0.00 0.00 0.00 2.29
614 2801 6.042143 TGCTGAACTTTGTGAATCTTTTTCC 58.958 36.000 0.00 0.00 0.00 3.13
615 2802 5.463392 GCTGAACTTTGTGAATCTTTTTCCC 59.537 40.000 0.00 0.00 0.00 3.97
617 2804 7.181569 TGAACTTTGTGAATCTTTTTCCCTT 57.818 32.000 0.00 0.00 0.00 3.95
618 2805 7.041107 TGAACTTTGTGAATCTTTTTCCCTTG 58.959 34.615 0.00 0.00 0.00 3.61
619 2806 5.359756 ACTTTGTGAATCTTTTTCCCTTGC 58.640 37.500 0.00 0.00 0.00 4.01
620 2807 3.641437 TGTGAATCTTTTTCCCTTGCG 57.359 42.857 0.00 0.00 0.00 4.85
645 2834 7.280356 GGGTATCTTTAACAGGAAATCTAGCA 58.720 38.462 0.00 0.00 0.00 3.49
653 2842 5.283457 ACAGGAAATCTAGCATACACTCC 57.717 43.478 0.00 0.00 0.00 3.85
654 2843 4.716784 ACAGGAAATCTAGCATACACTCCA 59.283 41.667 0.00 0.00 0.00 3.86
655 2844 5.053145 CAGGAAATCTAGCATACACTCCAC 58.947 45.833 0.00 0.00 0.00 4.02
656 2845 4.965532 AGGAAATCTAGCATACACTCCACT 59.034 41.667 0.00 0.00 0.00 4.00
657 2846 5.069781 AGGAAATCTAGCATACACTCCACTC 59.930 44.000 0.00 0.00 0.00 3.51
658 2847 4.946478 AATCTAGCATACACTCCACTCC 57.054 45.455 0.00 0.00 0.00 3.85
659 2848 2.298610 TCTAGCATACACTCCACTCCG 58.701 52.381 0.00 0.00 0.00 4.63
660 2849 1.338337 CTAGCATACACTCCACTCCGG 59.662 57.143 0.00 0.00 0.00 5.14
670 2859 2.158295 ACTCCACTCCGGCCTCTATTAT 60.158 50.000 0.00 0.00 33.14 1.28
682 2872 9.710818 TCCGGCCTCTATTATAATTACTCTATT 57.289 33.333 2.68 0.00 0.00 1.73
736 2926 3.119531 TCAGTAAAATTCAAGCGGGCATG 60.120 43.478 0.00 0.00 0.00 4.06
737 2927 2.825532 AGTAAAATTCAAGCGGGCATGT 59.174 40.909 0.00 0.00 0.00 3.21
738 2928 2.368655 AAAATTCAAGCGGGCATGTC 57.631 45.000 0.00 0.00 0.00 3.06
739 2929 1.255882 AAATTCAAGCGGGCATGTCA 58.744 45.000 0.00 0.00 0.00 3.58
740 2930 0.527565 AATTCAAGCGGGCATGTCAC 59.472 50.000 0.00 0.00 0.00 3.67
741 2931 0.322816 ATTCAAGCGGGCATGTCACT 60.323 50.000 0.00 0.00 0.00 3.41
742 2932 0.537143 TTCAAGCGGGCATGTCACTT 60.537 50.000 0.00 0.00 0.00 3.16
743 2933 0.537143 TCAAGCGGGCATGTCACTTT 60.537 50.000 0.00 0.00 0.00 2.66
744 2934 1.164411 CAAGCGGGCATGTCACTTTA 58.836 50.000 0.00 0.00 0.00 1.85
745 2935 1.131126 CAAGCGGGCATGTCACTTTAG 59.869 52.381 0.00 0.00 0.00 1.85
746 2936 0.324943 AGCGGGCATGTCACTTTAGT 59.675 50.000 0.00 0.00 0.00 2.24
747 2937 0.727398 GCGGGCATGTCACTTTAGTC 59.273 55.000 0.00 0.00 0.00 2.59
748 2938 1.369625 CGGGCATGTCACTTTAGTCC 58.630 55.000 0.00 0.00 0.00 3.85
753 2943 4.081087 GGGCATGTCACTTTAGTCCTCTAA 60.081 45.833 0.00 0.00 34.76 2.10
814 3010 4.043596 AGAAAAGAGGCCTAGGATGACAT 58.956 43.478 14.75 0.00 0.00 3.06
915 3115 2.107705 GCACGAGCTACCTCTGCTA 58.892 57.895 0.00 0.00 41.30 3.49
957 3157 0.610687 CACACTCCCCTCTTGACTCC 59.389 60.000 0.00 0.00 0.00 3.85
1149 3349 3.923864 TGGTCGAACGCCAGCACT 61.924 61.111 0.00 0.00 0.00 4.40
1474 3674 4.710167 TCCCGCTCGAGGTCGTCA 62.710 66.667 15.58 0.00 40.80 4.35
1536 3736 4.789173 TCCGGGGAGATTCCGCCA 62.789 66.667 0.00 0.00 45.71 5.69
1713 3913 1.737735 CATGACGGAGCTTGTGCGA 60.738 57.895 0.00 0.00 44.08 5.10
2016 4216 1.827789 GGTGTTGCAGCTGTGGGAA 60.828 57.895 16.64 0.53 0.00 3.97
2456 4656 3.280295 AGCTGCTTCTTGATCAGAATGG 58.720 45.455 0.00 0.00 40.95 3.16
2489 4689 0.759436 ATACCGCCGGAGATTGGACT 60.759 55.000 11.71 0.00 0.00 3.85
2533 4733 1.097232 CCTCAGCGGCAATTCATTCA 58.903 50.000 1.45 0.00 0.00 2.57
2876 5076 3.147132 TGGCACAGACCATGACGT 58.853 55.556 0.00 0.00 33.75 4.34
3171 5371 2.568623 AAAGGCTTTCCACGATGAGT 57.431 45.000 6.68 0.00 33.74 3.41
3483 5683 6.429385 ACAACATTCTCCTTGACTCTGATTTC 59.571 38.462 0.00 0.00 0.00 2.17
3633 5833 9.297037 ACAGTTTGGAAATGCTTATAAACTACT 57.703 29.630 0.00 0.00 36.54 2.57
3634 5834 9.774742 CAGTTTGGAAATGCTTATAAACTACTC 57.225 33.333 0.00 0.00 36.54 2.59
3635 5835 8.957466 AGTTTGGAAATGCTTATAAACTACTCC 58.043 33.333 0.00 0.00 36.81 3.85
3637 5837 7.208064 TGGAAATGCTTATAAACTACTCCCT 57.792 36.000 0.00 0.00 0.00 4.20
3638 5838 7.280356 TGGAAATGCTTATAAACTACTCCCTC 58.720 38.462 0.00 0.00 0.00 4.30
3640 5840 4.931661 TGCTTATAAACTACTCCCTCCG 57.068 45.455 0.00 0.00 0.00 4.63
3641 5841 4.284178 TGCTTATAAACTACTCCCTCCGT 58.716 43.478 0.00 0.00 0.00 4.69
3642 5842 4.713321 TGCTTATAAACTACTCCCTCCGTT 59.287 41.667 0.00 0.00 0.00 4.44
3643 5843 5.163478 TGCTTATAAACTACTCCCTCCGTTC 60.163 44.000 0.00 0.00 0.00 3.95
3644 5844 5.505173 TTATAAACTACTCCCTCCGTTCG 57.495 43.478 0.00 0.00 0.00 3.95
3645 5845 0.893447 AAACTACTCCCTCCGTTCGG 59.107 55.000 4.74 4.74 0.00 4.30
3646 5846 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
3647 5847 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
3648 5848 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
3649 5849 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
3650 5850 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3651 5851 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3652 5852 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3653 5853 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3654 5854 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3655 5855 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3656 5856 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3657 5857 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
3658 5858 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
3659 5859 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
3660 5860 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
3661 5861 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
3662 5862 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
3663 5863 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
3664 5864 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
3665 5865 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
3666 5866 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
3667 5867 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
3668 5868 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
3669 5869 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
3670 5870 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
3671 5871 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
3672 5872 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
3673 5873 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
3674 5874 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
3675 5875 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
3676 5876 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
3677 5877 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
3678 5878 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
3679 5879 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
3680 5880 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
3681 5881 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
3682 5882 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
3683 5883 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
3684 5884 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
3711 5911 8.637196 ACATCTAGATACATCCATTTCTACGA 57.363 34.615 4.54 0.00 0.00 3.43
3712 5912 8.516234 ACATCTAGATACATCCATTTCTACGAC 58.484 37.037 4.54 0.00 0.00 4.34
3713 5913 8.515414 CATCTAGATACATCCATTTCTACGACA 58.485 37.037 4.54 0.00 0.00 4.35
3714 5914 8.459911 TCTAGATACATCCATTTCTACGACAA 57.540 34.615 0.00 0.00 0.00 3.18
3715 5915 8.568794 TCTAGATACATCCATTTCTACGACAAG 58.431 37.037 0.00 0.00 0.00 3.16
3716 5916 7.113658 AGATACATCCATTTCTACGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16
3717 5917 8.234136 AGATACATCCATTTCTACGACAAGTA 57.766 34.615 0.00 0.00 0.00 2.24
3718 5918 8.692710 AGATACATCCATTTCTACGACAAGTAA 58.307 33.333 0.00 0.00 34.45 2.24
3719 5919 9.477484 GATACATCCATTTCTACGACAAGTAAT 57.523 33.333 0.00 0.00 34.45 1.89
3720 5920 9.832445 ATACATCCATTTCTACGACAAGTAATT 57.168 29.630 0.00 0.00 34.45 1.40
3721 5921 8.197988 ACATCCATTTCTACGACAAGTAATTC 57.802 34.615 0.00 0.00 34.45 2.17
3722 5922 7.280205 ACATCCATTTCTACGACAAGTAATTCC 59.720 37.037 0.00 0.00 34.45 3.01
3723 5923 5.808540 TCCATTTCTACGACAAGTAATTCCG 59.191 40.000 0.00 0.00 34.45 4.30
3724 5924 5.808540 CCATTTCTACGACAAGTAATTCCGA 59.191 40.000 0.00 0.00 34.45 4.55
3725 5925 6.311935 CCATTTCTACGACAAGTAATTCCGAA 59.688 38.462 0.00 0.00 34.45 4.30
3726 5926 7.011109 CCATTTCTACGACAAGTAATTCCGAAT 59.989 37.037 0.00 0.00 34.45 3.34
3727 5927 6.880822 TTCTACGACAAGTAATTCCGAATG 57.119 37.500 0.00 0.00 34.45 2.67
3728 5928 5.345702 TCTACGACAAGTAATTCCGAATGG 58.654 41.667 0.00 0.00 34.45 3.16
3729 5929 4.196626 ACGACAAGTAATTCCGAATGGA 57.803 40.909 0.00 0.00 44.61 3.41
3730 5930 5.345702 TACGACAAGTAATTCCGAATGGAG 58.654 41.667 0.00 0.00 37.76 3.86
3731 5931 5.680408 TACGACAAGTAATTCCGAATGGAGG 60.680 44.000 0.00 0.00 37.76 4.30
3732 5932 8.567878 TACGACAAGTAATTCCGAATGGAGGG 62.568 46.154 0.00 0.00 37.76 4.30
3805 6005 5.518848 TTGTGTCTGCAGTTGAATTTCAT 57.481 34.783 14.67 0.00 0.00 2.57
3905 6106 9.199982 CATTTTTATCTGATATTGCATTCCACC 57.800 33.333 0.00 0.00 0.00 4.61
3926 6127 3.919804 CCGCATGTTGTTAGATTGGTTTG 59.080 43.478 0.00 0.00 0.00 2.93
3954 6155 1.450669 GTTTCCGATAAGGGGCGCA 60.451 57.895 10.83 0.00 41.52 6.09
4040 6243 4.897224 CATAACTAAGATGCACACAACCG 58.103 43.478 0.00 0.00 0.00 4.44
4114 6319 5.354513 CACTCGTCATATATAGGACCGACAT 59.645 44.000 19.06 8.09 33.78 3.06
4158 6365 8.257306 TCAAGCATAGATCACTATTGTTGTACA 58.743 33.333 0.00 0.00 37.24 2.90
4162 6369 9.098355 GCATAGATCACTATTGTTGTACAGAAA 57.902 33.333 0.00 0.00 37.24 2.52
4220 6427 2.355132 CGACCGTCTATCTGTACAAGCT 59.645 50.000 0.00 0.00 0.00 3.74
4227 6434 6.139435 CGTCTATCTGTACAAGCTGATACAG 58.861 44.000 22.99 22.99 46.46 2.74
5047 7422 2.107204 AGTGCTTTCTCCATCCAGTGTT 59.893 45.455 0.00 0.00 0.00 3.32
5059 7434 4.384098 CCATCCAGTGTTGCATCTAACCTA 60.384 45.833 0.00 0.00 0.00 3.08
5072 7449 5.762218 GCATCTAACCTAGACTGCAAATCAT 59.238 40.000 0.00 0.00 38.28 2.45
5074 7451 7.201767 GCATCTAACCTAGACTGCAAATCATTT 60.202 37.037 0.00 0.00 38.28 2.32
5238 7619 1.153628 GACACCATAGCGCCGTCTT 60.154 57.895 2.29 0.00 0.00 3.01
5257 7638 6.093404 CGTCTTGTCTTTGATTCTAGCTACA 58.907 40.000 0.00 0.00 0.00 2.74
5292 7673 3.302480 GGCACTGCGACATTACGAAATAG 60.302 47.826 0.00 0.00 35.09 1.73
5342 7723 1.186200 TGAGACGAGCAGCATAAGGT 58.814 50.000 0.00 0.00 0.00 3.50
5451 7832 3.513515 GGGTAAATGTCATGAAGGCCAAA 59.486 43.478 5.01 0.00 0.00 3.28
5538 7919 0.106769 TCCTGGACTTGCTTGCACAA 60.107 50.000 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
290 291 1.686355 CTACTGAGATGGCGTCCTCT 58.314 55.000 2.37 0.00 0.00 3.69
332 333 1.140312 ATGTCGGAGTGGCCCATAAT 58.860 50.000 0.00 0.00 0.00 1.28
440 2627 3.555956 GCACAGCGTATTTACTGCTATGT 59.444 43.478 11.52 5.10 37.42 2.29
533 2720 9.486497 CATGCTTCTGTAATAGTCATGTATTCT 57.514 33.333 0.00 0.00 31.60 2.40
534 2721 9.265901 ACATGCTTCTGTAATAGTCATGTATTC 57.734 33.333 0.00 0.00 39.09 1.75
535 2722 9.049523 CACATGCTTCTGTAATAGTCATGTATT 57.950 33.333 4.88 0.00 38.97 1.89
536 2723 8.424133 TCACATGCTTCTGTAATAGTCATGTAT 58.576 33.333 4.88 0.00 38.97 2.29
543 2730 9.013229 TGATTTTTCACATGCTTCTGTAATAGT 57.987 29.630 0.00 0.00 0.00 2.12
582 2769 8.362639 AGATTCACAAAGTTCAGCATACAATTT 58.637 29.630 0.00 0.00 0.00 1.82
583 2770 7.889469 AGATTCACAAAGTTCAGCATACAATT 58.111 30.769 0.00 0.00 0.00 2.32
584 2771 7.458409 AGATTCACAAAGTTCAGCATACAAT 57.542 32.000 0.00 0.00 0.00 2.71
615 2802 3.869065 TCCTGTTAAAGATACCCGCAAG 58.131 45.455 0.00 0.00 0.00 4.01
617 2804 3.985019 TTCCTGTTAAAGATACCCGCA 57.015 42.857 0.00 0.00 0.00 5.69
618 2805 5.123936 AGATTTCCTGTTAAAGATACCCGC 58.876 41.667 0.00 0.00 0.00 6.13
619 2806 6.424207 GCTAGATTTCCTGTTAAAGATACCCG 59.576 42.308 0.00 0.00 0.00 5.28
620 2807 7.280356 TGCTAGATTTCCTGTTAAAGATACCC 58.720 38.462 0.00 0.00 0.00 3.69
631 2820 4.716784 TGGAGTGTATGCTAGATTTCCTGT 59.283 41.667 0.00 0.00 0.00 4.00
645 2834 1.001760 AGGCCGGAGTGGAGTGTAT 59.998 57.895 5.05 0.00 42.00 2.29
653 2842 7.122948 AGAGTAATTATAATAGAGGCCGGAGTG 59.877 40.741 5.05 0.00 0.00 3.51
654 2843 7.183460 AGAGTAATTATAATAGAGGCCGGAGT 58.817 38.462 5.05 0.00 0.00 3.85
655 2844 7.648039 AGAGTAATTATAATAGAGGCCGGAG 57.352 40.000 5.05 0.00 0.00 4.63
656 2845 9.710818 AATAGAGTAATTATAATAGAGGCCGGA 57.289 33.333 5.05 0.00 0.00 5.14
682 2872 6.154203 TGAGTATTTGATGCCACACAAAAA 57.846 33.333 0.00 0.00 39.01 1.94
687 2877 4.107622 GCATTGAGTATTTGATGCCACAC 58.892 43.478 0.00 0.00 39.08 3.82
744 2934 9.503399 ACACGAAAATAGAAAAATTAGAGGACT 57.497 29.630 0.00 0.00 0.00 3.85
783 2973 7.643123 TCCTAGGCCTCTTTTCTTTTATTCAT 58.357 34.615 9.68 0.00 0.00 2.57
814 3010 7.447374 ACATGTGATTCGTTCTTGGATTTTA 57.553 32.000 0.00 0.00 0.00 1.52
855 3051 1.263356 GTGTCACCTAGTGGCTGGTA 58.737 55.000 0.59 0.00 39.12 3.25
856 3052 1.481056 GGTGTCACCTAGTGGCTGGT 61.481 60.000 15.22 0.00 39.12 4.00
857 3053 1.296715 GGTGTCACCTAGTGGCTGG 59.703 63.158 15.22 0.00 39.12 4.85
915 3115 1.000612 GTCCGGGAAGAGGGAGAGT 59.999 63.158 0.00 0.00 31.73 3.24
957 3157 2.055042 CCTCGGGGAGTGGAGACAG 61.055 68.421 0.00 0.00 36.12 3.51
1348 3548 1.623811 GTTGCTGGAGAGGTTGAGGTA 59.376 52.381 0.00 0.00 0.00 3.08
1536 3736 2.754658 CTCCACCCGCCGTACTCT 60.755 66.667 0.00 0.00 0.00 3.24
1593 3793 1.369983 AGTTCTGGGGGTATCTTCCCT 59.630 52.381 1.72 0.00 46.27 4.20
1608 3808 2.807108 GCTCGTCAAGTTTCCCAGTTCT 60.807 50.000 0.00 0.00 0.00 3.01
1621 3821 0.610509 AGCTCTCTGAGGCTCGTCAA 60.611 55.000 10.42 0.00 32.98 3.18
2016 4216 2.841160 GCCGCCGGTGAAGTTGTTT 61.841 57.895 18.79 0.00 0.00 2.83
2160 4360 0.391597 TTGGACCGAAGAGCGAGTTT 59.608 50.000 0.00 0.00 44.57 2.66
2268 4468 1.522580 GGTCAGATTCGGCAGCTCC 60.523 63.158 0.00 0.00 0.00 4.70
2397 4597 2.495866 CCAATGGATGCCGGCAAC 59.504 61.111 36.33 31.40 0.00 4.17
2456 4656 2.757056 GGTATTGCGCCGGTGAACC 61.757 63.158 21.76 15.61 0.00 3.62
2876 5076 2.299013 GACAGTCCACCATGAGTGTGTA 59.701 50.000 6.26 0.00 46.31 2.90
3075 5275 3.508793 CACCTTTGCCAATCATGTTCTCT 59.491 43.478 0.00 0.00 0.00 3.10
3632 5832 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3633 5833 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3634 5834 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3635 5835 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3637 5837 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
3638 5838 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
3640 5840 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
3641 5841 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
3642 5842 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
3643 5843 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
3644 5844 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
3645 5845 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
3646 5846 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
3647 5847 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
3648 5848 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
3649 5849 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
3650 5850 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
3651 5851 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
3652 5852 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
3653 5853 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
3654 5854 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
3655 5855 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
3656 5856 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
3657 5857 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
3658 5858 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
3685 5885 9.734984 TCGTAGAAATGGATGTATCTAGATGTA 57.265 33.333 15.79 4.44 0.00 2.29
3686 5886 8.516234 GTCGTAGAAATGGATGTATCTAGATGT 58.484 37.037 15.79 1.25 39.69 3.06
3687 5887 8.515414 TGTCGTAGAAATGGATGTATCTAGATG 58.485 37.037 15.79 0.00 39.69 2.90
3688 5888 8.637196 TGTCGTAGAAATGGATGTATCTAGAT 57.363 34.615 10.73 10.73 39.69 1.98
3689 5889 8.459911 TTGTCGTAGAAATGGATGTATCTAGA 57.540 34.615 0.00 0.00 39.69 2.43
3690 5890 8.353684 ACTTGTCGTAGAAATGGATGTATCTAG 58.646 37.037 0.00 0.00 39.69 2.43
3691 5891 8.234136 ACTTGTCGTAGAAATGGATGTATCTA 57.766 34.615 0.00 0.00 39.69 1.98
3692 5892 7.113658 ACTTGTCGTAGAAATGGATGTATCT 57.886 36.000 0.00 0.00 39.69 1.98
3693 5893 8.867112 TTACTTGTCGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
3694 5894 9.832445 AATTACTTGTCGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
3695 5895 9.309516 GAATTACTTGTCGTAGAAATGGATGTA 57.690 33.333 0.00 0.00 39.69 2.29
3696 5896 7.280205 GGAATTACTTGTCGTAGAAATGGATGT 59.720 37.037 0.00 0.00 39.69 3.06
3697 5897 7.516785 CGGAATTACTTGTCGTAGAAATGGATG 60.517 40.741 0.00 0.00 39.69 3.51
3698 5898 6.479001 CGGAATTACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
3699 5899 5.808540 CGGAATTACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
3700 5900 5.808540 TCGGAATTACTTGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
3701 5901 6.880822 TCGGAATTACTTGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
3702 5902 7.011109 CCATTCGGAATTACTTGTCGTAGAAAT 59.989 37.037 0.00 0.00 39.69 2.17
3703 5903 6.311935 CCATTCGGAATTACTTGTCGTAGAAA 59.688 38.462 0.00 0.00 39.69 2.52
3704 5904 5.808540 CCATTCGGAATTACTTGTCGTAGAA 59.191 40.000 0.00 0.00 39.69 2.10
3705 5905 5.125900 TCCATTCGGAATTACTTGTCGTAGA 59.874 40.000 0.00 0.00 38.83 2.59
3706 5906 5.345702 TCCATTCGGAATTACTTGTCGTAG 58.654 41.667 0.00 0.00 38.83 3.51
3707 5907 5.327616 TCCATTCGGAATTACTTGTCGTA 57.672 39.130 0.00 0.00 38.83 3.43
3708 5908 4.181578 CTCCATTCGGAATTACTTGTCGT 58.818 43.478 0.00 0.00 42.21 4.34
3709 5909 3.555956 CCTCCATTCGGAATTACTTGTCG 59.444 47.826 0.00 0.00 42.21 4.35
3710 5910 3.877508 CCCTCCATTCGGAATTACTTGTC 59.122 47.826 0.00 0.00 42.21 3.18
3711 5911 3.521937 TCCCTCCATTCGGAATTACTTGT 59.478 43.478 0.00 0.00 42.21 3.16
3712 5912 4.130118 CTCCCTCCATTCGGAATTACTTG 58.870 47.826 0.00 0.00 42.21 3.16
3713 5913 3.780850 ACTCCCTCCATTCGGAATTACTT 59.219 43.478 0.00 0.00 42.21 2.24
3714 5914 3.385115 ACTCCCTCCATTCGGAATTACT 58.615 45.455 0.00 0.00 42.21 2.24
3715 5915 3.840124 ACTCCCTCCATTCGGAATTAC 57.160 47.619 0.00 0.00 42.21 1.89
3716 5916 7.897030 TGTATATACTCCCTCCATTCGGAATTA 59.103 37.037 13.89 0.00 42.21 1.40
3717 5917 6.729100 TGTATATACTCCCTCCATTCGGAATT 59.271 38.462 13.89 0.00 42.21 2.17
3718 5918 6.261435 TGTATATACTCCCTCCATTCGGAAT 58.739 40.000 13.89 0.00 42.21 3.01
3719 5919 5.647230 TGTATATACTCCCTCCATTCGGAA 58.353 41.667 13.89 0.00 42.21 4.30
3720 5920 5.265290 TGTATATACTCCCTCCATTCGGA 57.735 43.478 13.89 0.00 39.79 4.55
3721 5921 6.834451 ACTATGTATATACTCCCTCCATTCGG 59.166 42.308 13.89 0.00 0.00 4.30
3722 5922 7.883391 ACTATGTATATACTCCCTCCATTCG 57.117 40.000 13.89 0.00 0.00 3.34
3723 5923 9.924010 AGTACTATGTATATACTCCCTCCATTC 57.076 37.037 13.89 0.00 0.00 2.67
3724 5924 9.702253 CAGTACTATGTATATACTCCCTCCATT 57.298 37.037 13.89 0.00 0.00 3.16
3725 5925 8.847816 ACAGTACTATGTATATACTCCCTCCAT 58.152 37.037 13.89 0.46 0.00 3.41
3726 5926 8.228353 ACAGTACTATGTATATACTCCCTCCA 57.772 38.462 13.89 0.00 0.00 3.86
3727 5927 8.550585 AGACAGTACTATGTATATACTCCCTCC 58.449 40.741 13.89 0.00 32.25 4.30
3728 5928 9.603921 GAGACAGTACTATGTATATACTCCCTC 57.396 40.741 13.89 1.60 32.25 4.30
3729 5929 9.113797 TGAGACAGTACTATGTATATACTCCCT 57.886 37.037 13.89 0.00 32.25 4.20
3730 5930 9.736414 TTGAGACAGTACTATGTATATACTCCC 57.264 37.037 13.89 0.00 32.25 4.30
3783 5983 4.979943 TGAAATTCAACTGCAGACACAA 57.020 36.364 23.35 7.64 0.00 3.33
3785 5985 5.403466 GGAAATGAAATTCAACTGCAGACAC 59.597 40.000 23.35 3.39 33.67 3.67
3888 6089 1.948834 TGCGGTGGAATGCAATATCAG 59.051 47.619 0.00 0.00 38.34 2.90
3905 6106 4.793071 TCAAACCAATCTAACAACATGCG 58.207 39.130 0.00 0.00 0.00 4.73
3926 6127 5.701290 CCCCTTATCGGAAACAATAGTGATC 59.299 44.000 0.00 0.00 33.16 2.92
4035 6238 3.659786 TCAGACTATTGGTGTTCGGTTG 58.340 45.455 0.00 0.00 0.00 3.77
4036 6239 4.553330 ATCAGACTATTGGTGTTCGGTT 57.447 40.909 0.00 0.00 0.00 4.44
4037 6240 5.670792 TTATCAGACTATTGGTGTTCGGT 57.329 39.130 0.00 0.00 0.00 4.69
4094 6299 5.007823 GGAGATGTCGGTCCTATATATGACG 59.992 48.000 10.81 7.49 32.19 4.35
4172 6379 7.600752 GCTACTAGTGAAGTGAGTTGAAAGAAT 59.399 37.037 5.39 0.00 39.39 2.40
4220 6427 8.683615 ACAGTTCGATGTAAGATTACTGTATCA 58.316 33.333 11.03 0.00 41.89 2.15
4227 6434 7.813852 AAGTGACAGTTCGATGTAAGATTAC 57.186 36.000 0.00 0.00 32.25 1.89
4339 6546 1.272554 CCCCTACCGGCTTCTTTCCT 61.273 60.000 0.00 0.00 0.00 3.36
4578 6785 1.537135 GCTCCTCTCCATGCTTCGTAC 60.537 57.143 0.00 0.00 0.00 3.67
4932 7139 6.522054 TGTAACAGGAAAGTAGAGACAAAGG 58.478 40.000 0.00 0.00 0.00 3.11
4933 7140 8.608844 ATTGTAACAGGAAAGTAGAGACAAAG 57.391 34.615 0.00 0.00 0.00 2.77
4936 7143 7.297936 TGATTGTAACAGGAAAGTAGAGACA 57.702 36.000 0.00 0.00 0.00 3.41
4937 7144 8.088981 TCTTGATTGTAACAGGAAAGTAGAGAC 58.911 37.037 0.00 0.00 0.00 3.36
5047 7422 4.551702 TTTGCAGTCTAGGTTAGATGCA 57.448 40.909 13.90 13.90 42.22 3.96
5238 7619 7.040686 GGGTTTTTGTAGCTAGAATCAAAGACA 60.041 37.037 20.34 3.42 36.95 3.41
5257 7638 0.829990 CAGTGCCTGTTGGGGTTTTT 59.170 50.000 0.00 0.00 35.12 1.94
5342 7723 0.108186 TCTCGACGACCGCTTACCTA 60.108 55.000 0.00 0.00 38.37 3.08
5637 8019 3.590574 GGACAACTTGGGCCCCCT 61.591 66.667 22.27 0.00 36.94 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.