Multiple sequence alignment - TraesCS2B01G266600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G266600 chr2B 100.000 3258 0 0 1 3258 359129518 359132775 0.000000e+00 6017.0
1 TraesCS2B01G266600 chr2B 100.000 2586 0 0 3467 6052 359132984 359135569 0.000000e+00 4776.0
2 TraesCS2B01G266600 chr2B 95.603 796 33 2 5257 6052 381824656 381825449 0.000000e+00 1275.0
3 TraesCS2B01G266600 chr2B 76.209 517 92 26 4390 4898 690931108 690931601 1.680000e-60 244.0
4 TraesCS2B01G266600 chr2D 95.036 1793 57 17 3467 5252 309062317 309060550 0.000000e+00 2789.0
5 TraesCS2B01G266600 chr2D 92.920 1921 85 19 569 2468 309066906 309065016 0.000000e+00 2747.0
6 TraesCS2B01G266600 chr2D 92.871 505 20 11 2753 3251 309062821 309062327 0.000000e+00 719.0
7 TraesCS2B01G266600 chr2D 93.023 301 15 3 2464 2763 309064926 309064631 9.320000e-118 435.0
8 TraesCS2B01G266600 chr2D 80.887 293 44 11 4390 4676 574656799 574657085 2.840000e-53 220.0
9 TraesCS2B01G266600 chr2A 94.740 1806 53 13 3467 5249 430707157 430708943 0.000000e+00 2771.0
10 TraesCS2B01G266600 chr2A 90.699 1731 102 21 757 2468 430704366 430706056 0.000000e+00 2250.0
11 TraesCS2B01G266600 chr2A 95.701 628 19 2 2466 3090 430706148 430706770 0.000000e+00 1003.0
12 TraesCS2B01G266600 chr2A 93.878 196 9 1 569 764 430689678 430689870 5.930000e-75 292.0
13 TraesCS2B01G266600 chr2A 75.388 516 95 26 4390 4898 713016598 713017088 2.840000e-53 220.0
14 TraesCS2B01G266600 chr2A 86.188 181 16 7 3080 3258 430706946 430707119 2.880000e-43 187.0
15 TraesCS2B01G266600 chr7A 96.921 812 22 3 5242 6052 475201754 475200945 0.000000e+00 1358.0
16 TraesCS2B01G266600 chr5B 96.902 807 23 2 5246 6052 45944645 45945449 0.000000e+00 1351.0
17 TraesCS2B01G266600 chr5B 77.829 433 64 20 4470 4898 197193105 197192701 7.840000e-59 239.0
18 TraesCS2B01G266600 chr5B 96.970 33 1 0 1879 1911 484075676 484075708 8.470000e-04 56.5
19 TraesCS2B01G266600 chr1A 96.411 808 27 2 5246 6052 320907074 320906268 0.000000e+00 1330.0
20 TraesCS2B01G266600 chr1A 94.919 807 40 1 5246 6052 477727861 477727056 0.000000e+00 1262.0
21 TraesCS2B01G266600 chr1A 80.645 248 41 7 1219 1462 460280945 460281189 1.040000e-42 185.0
22 TraesCS2B01G266600 chr1D 96.415 809 21 5 5246 6052 371592585 371593387 0.000000e+00 1327.0
23 TraesCS2B01G266600 chr1D 80.672 238 40 6 1219 1453 360467188 360467422 4.820000e-41 180.0
24 TraesCS2B01G266600 chr3B 96.035 807 28 4 5247 6052 366139978 366139175 0.000000e+00 1310.0
25 TraesCS2B01G266600 chr3B 79.032 248 46 6 1208 1453 680676753 680676510 1.350000e-36 165.0
26 TraesCS2B01G266600 chr7B 95.314 811 35 3 5243 6052 202355836 202355028 0.000000e+00 1284.0
27 TraesCS2B01G266600 chr1B 94.919 807 40 1 5246 6052 301046767 301045962 0.000000e+00 1262.0
28 TraesCS2B01G266600 chr1B 80.973 473 71 12 1 467 648716002 648716461 2.070000e-94 357.0
29 TraesCS2B01G266600 chr1B 80.242 248 42 7 1219 1462 482696922 482697166 4.820000e-41 180.0
30 TraesCS2B01G266600 chr5A 77.598 433 65 20 4470 4898 230454424 230454828 3.650000e-57 233.0
31 TraesCS2B01G266600 chr5A 80.212 283 48 8 4411 4689 225243136 225243414 7.950000e-49 206.0
32 TraesCS2B01G266600 chr5D 76.151 478 82 20 4425 4898 192538824 192539273 7.900000e-54 222.0
33 TraesCS2B01G266600 chr3A 82.661 248 37 6 1208 1453 651996505 651996748 1.320000e-51 215.0
34 TraesCS2B01G266600 chr3A 81.013 237 41 4 1219 1453 651648976 651649210 1.040000e-42 185.0
35 TraesCS2B01G266600 chr3D 80.252 238 41 6 1219 1453 516855897 516856131 2.240000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G266600 chr2B 359129518 359135569 6051 False 5396.50 6017 100.0000 1 6052 2 chr2B.!!$F3 6051
1 TraesCS2B01G266600 chr2B 381824656 381825449 793 False 1275.00 1275 95.6030 5257 6052 1 chr2B.!!$F1 795
2 TraesCS2B01G266600 chr2D 309060550 309066906 6356 True 1672.50 2789 93.4625 569 5252 4 chr2D.!!$R1 4683
3 TraesCS2B01G266600 chr2A 430704366 430708943 4577 False 1552.75 2771 91.8320 757 5249 4 chr2A.!!$F3 4492
4 TraesCS2B01G266600 chr7A 475200945 475201754 809 True 1358.00 1358 96.9210 5242 6052 1 chr7A.!!$R1 810
5 TraesCS2B01G266600 chr5B 45944645 45945449 804 False 1351.00 1351 96.9020 5246 6052 1 chr5B.!!$F1 806
6 TraesCS2B01G266600 chr1A 320906268 320907074 806 True 1330.00 1330 96.4110 5246 6052 1 chr1A.!!$R1 806
7 TraesCS2B01G266600 chr1A 477727056 477727861 805 True 1262.00 1262 94.9190 5246 6052 1 chr1A.!!$R2 806
8 TraesCS2B01G266600 chr1D 371592585 371593387 802 False 1327.00 1327 96.4150 5246 6052 1 chr1D.!!$F2 806
9 TraesCS2B01G266600 chr3B 366139175 366139978 803 True 1310.00 1310 96.0350 5247 6052 1 chr3B.!!$R1 805
10 TraesCS2B01G266600 chr7B 202355028 202355836 808 True 1284.00 1284 95.3140 5243 6052 1 chr7B.!!$R1 809
11 TraesCS2B01G266600 chr1B 301045962 301046767 805 True 1262.00 1262 94.9190 5246 6052 1 chr1B.!!$R1 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 333 0.106335 CTGCGAGATCCAGAAGCCAT 59.894 55.000 0.00 0.00 32.03 4.40 F
2152 2179 0.538118 TCTCCGTTGGGAATAACCGG 59.462 55.000 0.00 0.00 43.27 5.28 F
3615 5775 1.616865 GCTCCATGGTGCAATGCATAT 59.383 47.619 29.33 6.66 41.91 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2205 2232 0.748729 GGTCAAAACACCGTGGGTCA 60.749 55.000 3.03 0.0 31.02 4.02 R
3966 6141 1.078426 GATCCAACAGGTCACGGGG 60.078 63.158 0.00 0.0 0.00 5.73 R
5375 7559 0.381801 CTTCGCTGTGTTGCCTTGTT 59.618 50.000 0.00 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.579201 ACCATCCTCGAAGCACCG 59.421 61.111 0.00 0.00 0.00 4.94
18 19 2.202932 CCATCCTCGAAGCACCGG 60.203 66.667 0.00 0.00 0.00 5.28
19 20 2.721167 CCATCCTCGAAGCACCGGA 61.721 63.158 9.46 0.00 0.00 5.14
20 21 1.218047 CATCCTCGAAGCACCGGAA 59.782 57.895 9.46 0.00 0.00 4.30
21 22 0.807667 CATCCTCGAAGCACCGGAAG 60.808 60.000 9.46 0.15 0.00 3.46
22 23 2.579684 ATCCTCGAAGCACCGGAAGC 62.580 60.000 9.46 12.61 0.00 3.86
23 24 2.048222 CTCGAAGCACCGGAAGCA 60.048 61.111 21.98 4.33 0.00 3.91
24 25 2.048222 TCGAAGCACCGGAAGCAG 60.048 61.111 21.98 14.02 0.00 4.24
25 26 2.048222 CGAAGCACCGGAAGCAGA 60.048 61.111 21.98 0.00 0.00 4.26
26 27 2.097038 CGAAGCACCGGAAGCAGAG 61.097 63.158 21.98 10.71 0.00 3.35
27 28 1.293498 GAAGCACCGGAAGCAGAGA 59.707 57.895 21.98 0.00 0.00 3.10
28 29 1.004440 AAGCACCGGAAGCAGAGAC 60.004 57.895 21.98 0.00 0.00 3.36
29 30 2.435059 GCACCGGAAGCAGAGACC 60.435 66.667 9.46 0.00 0.00 3.85
30 31 2.125912 CACCGGAAGCAGAGACCG 60.126 66.667 9.46 0.00 45.24 4.79
35 36 3.842869 GGAAGCAGAGACCGAACAT 57.157 52.632 0.00 0.00 0.00 2.71
36 37 1.363744 GGAAGCAGAGACCGAACATG 58.636 55.000 0.00 0.00 0.00 3.21
37 38 1.338200 GGAAGCAGAGACCGAACATGT 60.338 52.381 0.00 0.00 0.00 3.21
38 39 1.996191 GAAGCAGAGACCGAACATGTC 59.004 52.381 0.00 0.00 0.00 3.06
39 40 0.247736 AGCAGAGACCGAACATGTCC 59.752 55.000 0.00 0.00 33.09 4.02
40 41 1.078759 GCAGAGACCGAACATGTCCG 61.079 60.000 0.00 0.00 33.09 4.79
41 42 0.526211 CAGAGACCGAACATGTCCGA 59.474 55.000 5.86 0.00 33.09 4.55
42 43 0.526662 AGAGACCGAACATGTCCGAC 59.473 55.000 5.86 0.00 33.09 4.79
43 44 0.797249 GAGACCGAACATGTCCGACG 60.797 60.000 5.86 6.86 33.09 5.12
45 46 2.508439 CCGAACATGTCCGACGGG 60.508 66.667 15.25 0.00 39.92 5.28
46 47 2.569657 CGAACATGTCCGACGGGA 59.430 61.111 15.25 0.95 41.08 5.14
47 48 1.141019 CGAACATGTCCGACGGGAT 59.859 57.895 15.25 3.64 46.14 3.85
48 49 0.870307 CGAACATGTCCGACGGGATC 60.870 60.000 15.25 5.90 46.14 3.36
49 50 0.174845 GAACATGTCCGACGGGATCA 59.825 55.000 15.25 11.50 46.14 2.92
50 51 0.175760 AACATGTCCGACGGGATCAG 59.824 55.000 15.25 3.47 46.14 2.90
51 52 0.683179 ACATGTCCGACGGGATCAGA 60.683 55.000 15.25 0.00 46.14 3.27
52 53 0.249073 CATGTCCGACGGGATCAGAC 60.249 60.000 15.25 3.98 46.14 3.51
53 54 1.725557 ATGTCCGACGGGATCAGACG 61.726 60.000 15.25 0.12 46.14 4.18
54 55 3.515286 TCCGACGGGATCAGACGC 61.515 66.667 15.25 0.00 37.43 5.19
55 56 4.570663 CCGACGGGATCAGACGCC 62.571 72.222 5.81 0.00 34.06 5.68
56 57 4.907034 CGACGGGATCAGACGCCG 62.907 72.222 5.88 5.88 0.00 6.46
59 60 4.933064 CGGGATCAGACGCCGCTC 62.933 72.222 0.00 0.00 0.00 5.03
60 61 3.838271 GGGATCAGACGCCGCTCA 61.838 66.667 0.00 0.00 0.00 4.26
61 62 2.279120 GGATCAGACGCCGCTCAG 60.279 66.667 0.00 0.00 0.00 3.35
62 63 2.775856 GGATCAGACGCCGCTCAGA 61.776 63.158 0.00 0.00 0.00 3.27
63 64 1.587613 GATCAGACGCCGCTCAGAC 60.588 63.158 0.00 0.00 0.00 3.51
64 65 2.271607 GATCAGACGCCGCTCAGACA 62.272 60.000 0.00 0.00 0.00 3.41
65 66 1.877576 ATCAGACGCCGCTCAGACAA 61.878 55.000 0.00 0.00 0.00 3.18
66 67 2.091112 CAGACGCCGCTCAGACAAG 61.091 63.158 0.00 0.00 0.00 3.16
67 68 2.811317 GACGCCGCTCAGACAAGG 60.811 66.667 0.00 0.00 0.00 3.61
68 69 3.282745 GACGCCGCTCAGACAAGGA 62.283 63.158 0.00 0.00 0.00 3.36
69 70 2.811317 CGCCGCTCAGACAAGGAC 60.811 66.667 0.00 0.00 0.00 3.85
70 71 2.811317 GCCGCTCAGACAAGGACG 60.811 66.667 0.00 0.00 0.00 4.79
71 72 2.125912 CCGCTCAGACAAGGACGG 60.126 66.667 0.00 0.00 0.00 4.79
72 73 2.811317 CGCTCAGACAAGGACGGC 60.811 66.667 0.00 0.00 0.00 5.68
73 74 2.811317 GCTCAGACAAGGACGGCG 60.811 66.667 4.80 4.80 0.00 6.46
74 75 2.962569 CTCAGACAAGGACGGCGA 59.037 61.111 16.62 0.00 0.00 5.54
75 76 1.444553 CTCAGACAAGGACGGCGAC 60.445 63.158 16.62 7.58 0.00 5.19
76 77 2.142357 CTCAGACAAGGACGGCGACA 62.142 60.000 16.62 0.00 0.00 4.35
77 78 2.022129 CAGACAAGGACGGCGACAC 61.022 63.158 16.62 2.55 0.00 3.67
78 79 2.737376 GACAAGGACGGCGACACC 60.737 66.667 16.62 14.02 0.00 4.16
79 80 3.222354 GACAAGGACGGCGACACCT 62.222 63.158 16.62 16.18 38.21 4.00
80 81 2.432628 CAAGGACGGCGACACCTC 60.433 66.667 16.62 0.00 36.05 3.85
81 82 4.052229 AAGGACGGCGACACCTCG 62.052 66.667 16.62 0.00 43.28 4.63
108 109 4.692475 CCGACACCCACCCCGAAC 62.692 72.222 0.00 0.00 0.00 3.95
109 110 3.622826 CGACACCCACCCCGAACT 61.623 66.667 0.00 0.00 0.00 3.01
110 111 2.032071 GACACCCACCCCGAACTG 59.968 66.667 0.00 0.00 0.00 3.16
111 112 4.265056 ACACCCACCCCGAACTGC 62.265 66.667 0.00 0.00 0.00 4.40
114 115 4.410400 CCCACCCCGAACTGCCTC 62.410 72.222 0.00 0.00 0.00 4.70
115 116 4.410400 CCACCCCGAACTGCCTCC 62.410 72.222 0.00 0.00 0.00 4.30
116 117 3.322466 CACCCCGAACTGCCTCCT 61.322 66.667 0.00 0.00 0.00 3.69
117 118 3.322466 ACCCCGAACTGCCTCCTG 61.322 66.667 0.00 0.00 0.00 3.86
118 119 3.003173 CCCCGAACTGCCTCCTGA 61.003 66.667 0.00 0.00 0.00 3.86
119 120 2.581354 CCCGAACTGCCTCCTGAG 59.419 66.667 0.00 0.00 0.00 3.35
120 121 2.125350 CCGAACTGCCTCCTGAGC 60.125 66.667 0.00 0.00 0.00 4.26
121 122 2.507992 CGAACTGCCTCCTGAGCG 60.508 66.667 0.00 0.00 0.00 5.03
122 123 2.817396 GAACTGCCTCCTGAGCGC 60.817 66.667 0.00 0.00 0.00 5.92
123 124 3.596066 GAACTGCCTCCTGAGCGCA 62.596 63.158 11.47 9.10 34.84 6.09
124 125 3.890936 AACTGCCTCCTGAGCGCAC 62.891 63.158 11.47 3.13 33.35 5.34
139 140 4.337060 CACGACGACGCCTCCACA 62.337 66.667 7.30 0.00 43.96 4.17
140 141 3.371063 ACGACGACGCCTCCACAT 61.371 61.111 7.30 0.00 43.96 3.21
141 142 2.880879 CGACGACGCCTCCACATG 60.881 66.667 0.00 0.00 0.00 3.21
142 143 2.509336 GACGACGCCTCCACATGG 60.509 66.667 0.00 0.00 0.00 3.66
143 144 4.760047 ACGACGCCTCCACATGGC 62.760 66.667 0.00 0.00 46.42 4.40
148 149 4.102113 GCCTCCACATGGCTTTGT 57.898 55.556 0.00 0.00 46.38 2.83
149 150 1.588082 GCCTCCACATGGCTTTGTG 59.412 57.895 12.37 12.37 46.38 3.33
154 155 2.269978 CACATGGCTTTGTGGGAGG 58.730 57.895 11.72 0.00 42.63 4.30
155 156 1.077265 ACATGGCTTTGTGGGAGGG 59.923 57.895 0.00 0.00 0.00 4.30
156 157 1.683365 CATGGCTTTGTGGGAGGGG 60.683 63.158 0.00 0.00 0.00 4.79
157 158 3.607084 ATGGCTTTGTGGGAGGGGC 62.607 63.158 0.00 0.00 0.00 5.80
225 226 4.148825 CCACCCTCCGCCGAAGAG 62.149 72.222 0.00 0.00 0.00 2.85
234 235 3.832492 GCCGAAGAGGAGCGAGCT 61.832 66.667 0.00 0.00 45.00 4.09
235 236 2.103934 CCGAAGAGGAGCGAGCTG 59.896 66.667 0.84 0.00 45.00 4.24
236 237 2.410687 CCGAAGAGGAGCGAGCTGA 61.411 63.158 0.84 0.00 45.00 4.26
237 238 1.063972 CGAAGAGGAGCGAGCTGAG 59.936 63.158 0.84 0.00 0.00 3.35
238 239 1.226945 GAAGAGGAGCGAGCTGAGC 60.227 63.158 0.84 0.00 0.00 4.26
239 240 2.627510 GAAGAGGAGCGAGCTGAGCC 62.628 65.000 0.84 0.00 34.64 4.70
240 241 4.219999 GAGGAGCGAGCTGAGCCC 62.220 72.222 0.84 8.22 34.64 5.19
260 261 3.465403 CGACCCTGAGAGGCCCAG 61.465 72.222 0.00 0.00 32.73 4.45
261 262 2.284995 GACCCTGAGAGGCCCAGT 60.285 66.667 0.00 0.00 32.73 4.00
262 263 1.920835 GACCCTGAGAGGCCCAGTT 60.921 63.158 0.00 0.00 32.73 3.16
263 264 1.464198 ACCCTGAGAGGCCCAGTTT 60.464 57.895 0.00 0.00 32.73 2.66
264 265 1.301293 CCCTGAGAGGCCCAGTTTC 59.699 63.158 0.00 0.00 32.73 2.78
265 266 1.078848 CCTGAGAGGCCCAGTTTCG 60.079 63.158 0.00 0.00 0.00 3.46
266 267 1.544825 CCTGAGAGGCCCAGTTTCGA 61.545 60.000 0.00 0.00 0.00 3.71
267 268 0.108424 CTGAGAGGCCCAGTTTCGAG 60.108 60.000 0.00 0.00 0.00 4.04
268 269 0.541998 TGAGAGGCCCAGTTTCGAGA 60.542 55.000 0.00 0.00 0.00 4.04
269 270 0.108567 GAGAGGCCCAGTTTCGAGAC 60.109 60.000 0.00 0.00 0.00 3.36
270 271 1.446272 GAGGCCCAGTTTCGAGACG 60.446 63.158 0.00 0.00 0.00 4.18
271 272 1.874345 GAGGCCCAGTTTCGAGACGA 61.874 60.000 0.00 0.00 0.00 4.20
272 273 1.218316 GGCCCAGTTTCGAGACGAT 59.782 57.895 0.00 0.00 35.23 3.73
273 274 0.458669 GGCCCAGTTTCGAGACGATA 59.541 55.000 0.00 0.00 35.23 2.92
274 275 1.536284 GGCCCAGTTTCGAGACGATAG 60.536 57.143 0.00 0.00 35.23 2.08
275 276 1.536284 GCCCAGTTTCGAGACGATAGG 60.536 57.143 0.00 1.98 43.77 2.57
284 285 4.344474 GACGATAGGCCGCTCCCG 62.344 72.222 0.00 0.41 39.30 5.14
320 321 4.069232 CGAAGGTGGGCTGCGAGA 62.069 66.667 0.00 0.00 0.00 4.04
321 322 2.586792 GAAGGTGGGCTGCGAGAT 59.413 61.111 0.00 0.00 0.00 2.75
322 323 1.522580 GAAGGTGGGCTGCGAGATC 60.523 63.158 0.00 0.00 0.00 2.75
323 324 2.932130 GAAGGTGGGCTGCGAGATCC 62.932 65.000 0.00 0.00 0.00 3.36
324 325 3.785859 GGTGGGCTGCGAGATCCA 61.786 66.667 0.00 0.00 0.00 3.41
325 326 2.202987 GTGGGCTGCGAGATCCAG 60.203 66.667 0.00 0.00 0.00 3.86
326 327 2.364186 TGGGCTGCGAGATCCAGA 60.364 61.111 2.03 0.00 32.03 3.86
327 328 1.989508 TGGGCTGCGAGATCCAGAA 60.990 57.895 2.03 0.00 32.03 3.02
328 329 1.227497 GGGCTGCGAGATCCAGAAG 60.227 63.158 2.03 0.00 32.03 2.85
329 330 1.886777 GGCTGCGAGATCCAGAAGC 60.887 63.158 9.01 9.01 32.03 3.86
330 331 1.886777 GCTGCGAGATCCAGAAGCC 60.887 63.158 6.72 0.00 32.03 4.35
331 332 1.519246 CTGCGAGATCCAGAAGCCA 59.481 57.895 0.00 0.00 32.03 4.75
332 333 0.106335 CTGCGAGATCCAGAAGCCAT 59.894 55.000 0.00 0.00 32.03 4.40
333 334 1.342496 CTGCGAGATCCAGAAGCCATA 59.658 52.381 0.00 0.00 32.03 2.74
334 335 1.342496 TGCGAGATCCAGAAGCCATAG 59.658 52.381 0.00 0.00 0.00 2.23
335 336 1.337635 GCGAGATCCAGAAGCCATAGG 60.338 57.143 0.00 0.00 0.00 2.57
355 356 4.785453 CAGCCGGGAAGAGCCACC 62.785 72.222 2.18 0.00 38.95 4.61
360 361 3.787001 GGGAAGAGCCACCGGGAG 61.787 72.222 6.32 0.00 38.95 4.30
361 362 2.683933 GGAAGAGCCACCGGGAGA 60.684 66.667 6.32 0.00 35.59 3.71
362 363 2.726351 GGAAGAGCCACCGGGAGAG 61.726 68.421 6.32 0.00 35.59 3.20
363 364 1.682684 GAAGAGCCACCGGGAGAGA 60.683 63.158 6.32 0.00 35.59 3.10
364 365 1.671901 GAAGAGCCACCGGGAGAGAG 61.672 65.000 6.32 0.00 35.59 3.20
365 366 3.844090 GAGCCACCGGGAGAGAGC 61.844 72.222 6.32 0.00 35.59 4.09
406 407 3.083349 CAGCGGAGATGGGGTGGA 61.083 66.667 0.00 0.00 42.04 4.02
407 408 3.083997 AGCGGAGATGGGGTGGAC 61.084 66.667 0.00 0.00 0.00 4.02
408 409 4.530857 GCGGAGATGGGGTGGACG 62.531 72.222 0.00 0.00 0.00 4.79
409 410 4.530857 CGGAGATGGGGTGGACGC 62.531 72.222 0.00 0.00 0.00 5.19
484 485 4.043100 GTGGGGAACGGGAAGGGG 62.043 72.222 0.00 0.00 0.00 4.79
487 488 2.694992 GGGAACGGGAAGGGGGAT 60.695 66.667 0.00 0.00 0.00 3.85
488 489 2.595655 GGAACGGGAAGGGGGATG 59.404 66.667 0.00 0.00 0.00 3.51
489 490 2.595655 GAACGGGAAGGGGGATGG 59.404 66.667 0.00 0.00 0.00 3.51
490 491 3.021263 AACGGGAAGGGGGATGGG 61.021 66.667 0.00 0.00 0.00 4.00
491 492 3.589627 AACGGGAAGGGGGATGGGA 62.590 63.158 0.00 0.00 0.00 4.37
492 493 3.171388 CGGGAAGGGGGATGGGAG 61.171 72.222 0.00 0.00 0.00 4.30
493 494 2.778717 GGGAAGGGGGATGGGAGG 60.779 72.222 0.00 0.00 0.00 4.30
494 495 2.778717 GGAAGGGGGATGGGAGGG 60.779 72.222 0.00 0.00 0.00 4.30
495 496 2.778717 GAAGGGGGATGGGAGGGG 60.779 72.222 0.00 0.00 0.00 4.79
496 497 4.472310 AAGGGGGATGGGAGGGGG 62.472 72.222 0.00 0.00 0.00 5.40
501 502 4.880426 GGATGGGAGGGGGCGAGA 62.880 72.222 0.00 0.00 0.00 4.04
502 503 3.237741 GATGGGAGGGGGCGAGAG 61.238 72.222 0.00 0.00 0.00 3.20
503 504 3.758133 GATGGGAGGGGGCGAGAGA 62.758 68.421 0.00 0.00 0.00 3.10
504 505 3.765257 ATGGGAGGGGGCGAGAGAG 62.765 68.421 0.00 0.00 0.00 3.20
514 515 4.386245 CGAGAGAGCGCTACAACC 57.614 61.111 11.50 0.00 0.00 3.77
515 516 1.583967 CGAGAGAGCGCTACAACCG 60.584 63.158 11.50 7.13 0.00 4.44
516 517 1.226717 GAGAGAGCGCTACAACCGG 60.227 63.158 11.50 0.00 0.00 5.28
517 518 1.935327 GAGAGAGCGCTACAACCGGT 61.935 60.000 11.50 0.00 39.33 5.28
519 520 2.879462 GAGCGCTACAACCGGTCG 60.879 66.667 11.50 8.12 42.21 4.79
520 521 3.621892 GAGCGCTACAACCGGTCGT 62.622 63.158 11.50 5.05 42.21 4.34
521 522 2.735857 GCGCTACAACCGGTCGTT 60.736 61.111 8.04 0.00 33.90 3.85
522 523 1.444212 GCGCTACAACCGGTCGTTA 60.444 57.895 8.04 0.00 31.77 3.18
523 524 0.803380 GCGCTACAACCGGTCGTTAT 60.803 55.000 8.04 0.00 31.77 1.89
524 525 1.632422 CGCTACAACCGGTCGTTATT 58.368 50.000 8.04 0.00 31.77 1.40
525 526 1.322338 CGCTACAACCGGTCGTTATTG 59.678 52.381 8.04 3.29 31.77 1.90
526 527 1.061566 GCTACAACCGGTCGTTATTGC 59.938 52.381 8.04 2.00 31.77 3.56
527 528 1.322338 CTACAACCGGTCGTTATTGCG 59.678 52.381 8.04 0.00 31.77 4.85
528 529 1.293267 ACAACCGGTCGTTATTGCGG 61.293 55.000 8.04 0.00 31.77 5.69
529 530 1.004679 AACCGGTCGTTATTGCGGT 60.005 52.632 8.04 0.00 30.96 5.68
530 531 1.015607 AACCGGTCGTTATTGCGGTC 61.016 55.000 8.04 0.00 30.96 4.79
531 532 1.153706 CCGGTCGTTATTGCGGTCT 60.154 57.895 0.00 0.00 0.00 3.85
532 533 0.738412 CCGGTCGTTATTGCGGTCTT 60.738 55.000 0.00 0.00 0.00 3.01
533 534 0.643820 CGGTCGTTATTGCGGTCTTC 59.356 55.000 0.00 0.00 0.00 2.87
534 535 1.717194 GGTCGTTATTGCGGTCTTCA 58.283 50.000 0.00 0.00 0.00 3.02
535 536 2.070783 GGTCGTTATTGCGGTCTTCAA 58.929 47.619 0.00 0.00 0.00 2.69
536 537 2.481185 GGTCGTTATTGCGGTCTTCAAA 59.519 45.455 0.00 0.00 0.00 2.69
537 538 3.424433 GGTCGTTATTGCGGTCTTCAAAG 60.424 47.826 0.00 0.00 0.00 2.77
538 539 3.185797 GTCGTTATTGCGGTCTTCAAAGT 59.814 43.478 0.00 0.00 0.00 2.66
539 540 3.185594 TCGTTATTGCGGTCTTCAAAGTG 59.814 43.478 0.00 0.00 0.00 3.16
540 541 3.059188 CGTTATTGCGGTCTTCAAAGTGT 60.059 43.478 0.00 0.00 0.00 3.55
541 542 4.553938 CGTTATTGCGGTCTTCAAAGTGTT 60.554 41.667 0.00 0.00 0.00 3.32
542 543 5.333492 CGTTATTGCGGTCTTCAAAGTGTTA 60.333 40.000 0.00 0.00 0.00 2.41
543 544 6.608610 GTTATTGCGGTCTTCAAAGTGTTAT 58.391 36.000 0.00 0.00 0.00 1.89
544 545 7.412129 CGTTATTGCGGTCTTCAAAGTGTTATA 60.412 37.037 0.00 0.00 0.00 0.98
545 546 5.856126 TTGCGGTCTTCAAAGTGTTATAG 57.144 39.130 0.00 0.00 0.00 1.31
546 547 3.682858 TGCGGTCTTCAAAGTGTTATAGC 59.317 43.478 0.00 0.00 0.00 2.97
547 548 3.682858 GCGGTCTTCAAAGTGTTATAGCA 59.317 43.478 0.00 0.00 0.00 3.49
548 549 4.332819 GCGGTCTTCAAAGTGTTATAGCAT 59.667 41.667 0.00 0.00 0.00 3.79
549 550 5.163754 GCGGTCTTCAAAGTGTTATAGCATT 60.164 40.000 0.00 0.00 0.00 3.56
550 551 6.622896 GCGGTCTTCAAAGTGTTATAGCATTT 60.623 38.462 0.00 0.00 0.00 2.32
551 552 7.305474 CGGTCTTCAAAGTGTTATAGCATTTT 58.695 34.615 4.55 4.55 0.00 1.82
552 553 7.807907 CGGTCTTCAAAGTGTTATAGCATTTTT 59.192 33.333 7.23 2.73 0.00 1.94
553 554 8.915654 GGTCTTCAAAGTGTTATAGCATTTTTG 58.084 33.333 16.44 16.44 32.30 2.44
554 555 8.427774 GTCTTCAAAGTGTTATAGCATTTTTGC 58.572 33.333 17.17 0.00 31.71 3.68
556 557 8.885494 TTCAAAGTGTTATAGCATTTTTGCTT 57.115 26.923 17.17 4.30 43.52 3.91
557 558 8.885494 TCAAAGTGTTATAGCATTTTTGCTTT 57.115 26.923 17.17 1.07 43.52 3.51
558 559 9.973450 TCAAAGTGTTATAGCATTTTTGCTTTA 57.027 25.926 17.17 0.08 43.52 1.85
591 592 1.153005 GGAGATGCCCTTGCTGAGG 60.153 63.158 0.21 0.21 45.86 3.86
603 604 2.901813 CTGAGGAGGAGCAGCAGG 59.098 66.667 0.00 0.00 0.00 4.85
604 605 1.685077 CTGAGGAGGAGCAGCAGGA 60.685 63.158 0.00 0.00 0.00 3.86
605 606 1.678598 CTGAGGAGGAGCAGCAGGAG 61.679 65.000 0.00 0.00 0.00 3.69
631 632 3.010420 ACGGTAGGAGTAGTACGGAAAC 58.990 50.000 0.00 0.00 0.00 2.78
697 698 7.401860 GCAAGTTTCAATCTTTCAAACTTTCC 58.598 34.615 6.34 0.00 44.30 3.13
701 702 7.124147 AGTTTCAATCTTTCAAACTTTCCCTCA 59.876 33.333 0.00 0.00 37.09 3.86
730 731 3.497332 TGTCGGAGAGGAGAGAGAAAAA 58.503 45.455 0.00 0.00 36.95 1.94
849 850 4.252493 GGTCCCAGACCCCTCTTT 57.748 61.111 2.14 0.00 46.19 2.52
906 907 1.035932 TAAGGGCGTCCTCTTCCTCG 61.036 60.000 10.20 0.00 44.07 4.63
948 951 0.905357 CTGTTTCTCCCCTCCGACAT 59.095 55.000 0.00 0.00 0.00 3.06
984 1001 0.657312 TTGTGCTTGTGTGAAGAGCG 59.343 50.000 0.00 0.00 39.23 5.03
1261 1282 3.092403 CACATCATCACGGCGGTG 58.908 61.111 17.69 17.69 45.78 4.94
1396 1417 4.129737 GACTGCTACCGCTCGCCA 62.130 66.667 0.00 0.00 36.97 5.69
1536 1557 9.354673 TCTTCTGATTTCCCCATGATTAATAAC 57.645 33.333 0.00 0.00 0.00 1.89
1714 1740 6.206634 GTCTCAAACACTCCAACCAATTCATA 59.793 38.462 0.00 0.00 0.00 2.15
1767 1793 0.599728 TGCGCCCATGCTTTTTGTTC 60.600 50.000 4.18 0.00 35.36 3.18
1827 1854 4.663166 AGACGAGAATGTGTCATACTTCG 58.337 43.478 0.00 0.00 37.58 3.79
1830 1857 4.156190 ACGAGAATGTGTCATACTTCGTCT 59.844 41.667 0.00 0.00 0.00 4.18
1848 1875 4.279922 TCGTCTGTCTGGAATTAGTTGTCA 59.720 41.667 0.00 0.00 0.00 3.58
1874 1901 2.662866 ACGGAAGTACCTAGCATAGCA 58.337 47.619 0.00 0.00 46.88 3.49
1875 1902 2.361438 ACGGAAGTACCTAGCATAGCAC 59.639 50.000 0.00 0.00 46.88 4.40
1876 1903 2.361119 CGGAAGTACCTAGCATAGCACA 59.639 50.000 0.00 0.00 37.37 4.57
1882 1909 5.584913 AGTACCTAGCATAGCACAGGATAT 58.415 41.667 14.23 0.00 37.37 1.63
1934 1961 5.321102 TGTAGGATGTTATTTGGTTGCACT 58.679 37.500 0.00 0.00 0.00 4.40
1944 1971 8.637986 TGTTATTTGGTTGCACTAGAAGAAAAT 58.362 29.630 0.00 0.00 0.00 1.82
1946 1973 5.705609 TTGGTTGCACTAGAAGAAAATCC 57.294 39.130 0.00 0.00 0.00 3.01
1947 1974 4.724399 TGGTTGCACTAGAAGAAAATCCA 58.276 39.130 0.00 0.00 0.00 3.41
1949 1976 5.009610 TGGTTGCACTAGAAGAAAATCCAAC 59.990 40.000 0.00 0.00 0.00 3.77
1960 1987 7.597386 AGAAGAAAATCCAACAAAGCTATGTC 58.403 34.615 0.00 0.00 31.81 3.06
1979 2006 3.839490 TGTCCGGTTACTAGGGATTTGAA 59.161 43.478 0.00 0.00 31.43 2.69
2039 2066 0.855400 ACCCCATCACCCATTCCCTT 60.855 55.000 0.00 0.00 0.00 3.95
2086 2113 4.396166 CGCATATGAAGGAGAGGTTGTTTT 59.604 41.667 6.97 0.00 0.00 2.43
2087 2114 5.106157 CGCATATGAAGGAGAGGTTGTTTTT 60.106 40.000 6.97 0.00 0.00 1.94
2098 2125 5.653507 AGAGGTTGTTTTTCCGGTTAAAAC 58.346 37.500 26.45 26.45 42.80 2.43
2135 2162 5.728741 AGGAGATTTGACTGGGTTTCTATCT 59.271 40.000 0.00 0.00 0.00 1.98
2137 2164 5.995446 AGATTTGACTGGGTTTCTATCTCC 58.005 41.667 0.00 0.00 0.00 3.71
2140 2167 3.170717 TGACTGGGTTTCTATCTCCGTT 58.829 45.455 0.00 0.00 0.00 4.44
2147 2174 4.102054 GGGTTTCTATCTCCGTTGGGAATA 59.898 45.833 0.00 0.00 43.27 1.75
2152 2179 0.538118 TCTCCGTTGGGAATAACCGG 59.462 55.000 0.00 0.00 43.27 5.28
2155 2182 2.366266 CTCCGTTGGGAATAACCGGATA 59.634 50.000 9.46 0.00 43.27 2.59
2168 2195 9.886132 GGAATAACCGGATACACTATATGAAAT 57.114 33.333 9.46 0.00 0.00 2.17
2175 2202 7.148120 CCGGATACACTATATGAAATAGACGGT 60.148 40.741 0.00 0.00 28.50 4.83
2191 2218 2.169769 GACGGTGATAAATCCCTGTCCA 59.830 50.000 3.74 0.00 0.00 4.02
2192 2219 2.170607 ACGGTGATAAATCCCTGTCCAG 59.829 50.000 0.00 0.00 0.00 3.86
2274 2303 4.989279 ACGATGCCTAATTGCTTTCAAT 57.011 36.364 0.00 0.00 44.32 2.57
2296 2325 2.762535 ATATAGGTGTATGCCGTGGC 57.237 50.000 3.30 3.30 42.35 5.01
2308 2337 1.915614 GCCGTGGCTGTCAATGTCAG 61.916 60.000 2.98 3.17 38.26 3.51
2317 2346 4.518970 GGCTGTCAATGTCAGTAAGGAAAA 59.481 41.667 9.06 0.00 35.60 2.29
2324 2353 9.774742 GTCAATGTCAGTAAGGAAAATATTCAC 57.225 33.333 0.00 0.00 37.29 3.18
2346 2375 5.799936 CACGAGGTTGGCTTACAAATTATTG 59.200 40.000 0.00 0.00 41.58 1.90
2411 2440 7.461182 TCCATGTTGTTTATACTCCCAAAAG 57.539 36.000 0.00 0.00 0.00 2.27
2446 2475 6.552008 ACTCCCTCTGTTCCATAATTTTTGA 58.448 36.000 0.00 0.00 0.00 2.69
2447 2476 7.010160 ACTCCCTCTGTTCCATAATTTTTGAA 58.990 34.615 0.00 0.00 0.00 2.69
2477 2600 9.715123 GGTTTTAGTTCAATTTTTGGTCATTTG 57.285 29.630 0.00 0.00 0.00 2.32
2559 2682 9.525826 AGAGGAAATGATGGAAATATGATAACC 57.474 33.333 0.00 0.00 0.00 2.85
2680 2803 6.721321 CGCAGGTTAGAACTTAGAACAAAAA 58.279 36.000 0.00 0.00 0.00 1.94
3112 5244 5.759059 TCAATTCAATGTAAGATGGGCTCT 58.241 37.500 0.00 0.00 34.96 4.09
3115 5247 7.500227 TCAATTCAATGTAAGATGGGCTCTAAG 59.500 37.037 0.00 0.00 32.41 2.18
3133 5265 7.866729 GCTCTAAGCCTTCCATCTAAAATTAC 58.133 38.462 0.00 0.00 34.48 1.89
3157 5291 8.362464 ACTTTAGGATGCTAATGGATATACGA 57.638 34.615 19.53 0.00 0.00 3.43
3158 5292 8.812972 ACTTTAGGATGCTAATGGATATACGAA 58.187 33.333 19.53 0.00 0.00 3.85
3159 5293 9.307121 CTTTAGGATGCTAATGGATATACGAAG 57.693 37.037 7.58 0.00 0.00 3.79
3192 5326 5.601583 TGGCATATCATGTGCAAGAAAAT 57.398 34.783 8.81 0.00 44.25 1.82
3193 5327 6.712179 TGGCATATCATGTGCAAGAAAATA 57.288 33.333 8.81 0.00 44.25 1.40
3224 5358 6.318112 TCTCTACATGGTCCTGACATGATAT 58.682 40.000 11.87 0.00 46.60 1.63
3234 5368 6.038271 GGTCCTGACATGATATTGTACAAACC 59.962 42.308 13.23 6.93 0.00 3.27
3251 5385 9.186837 TGTACAAACCATAACTTTGTAAGGAAA 57.813 29.630 0.00 0.00 42.76 3.13
3548 5708 3.387374 TGGTGCAAAAGGACATTTGACAT 59.613 39.130 4.40 0.00 41.73 3.06
3611 5771 1.890625 TTGGCTCCATGGTGCAATGC 61.891 55.000 33.28 19.75 36.47 3.56
3615 5775 1.616865 GCTCCATGGTGCAATGCATAT 59.383 47.619 29.33 6.66 41.91 1.78
3617 5777 3.119602 GCTCCATGGTGCAATGCATATAG 60.120 47.826 29.33 8.68 41.91 1.31
3624 5784 4.216902 TGGTGCAATGCATATAGATCTTGC 59.783 41.667 12.38 10.38 41.91 4.01
3830 5990 5.724328 ACATACAGGGCTATTGTCATATCG 58.276 41.667 0.00 0.00 0.00 2.92
3870 6030 9.377312 TGATCGAAATAGATGATTGTTTGTACA 57.623 29.630 0.00 0.00 0.00 2.90
3872 6032 8.771920 TCGAAATAGATGATTGTTTGTACACT 57.228 30.769 0.00 0.00 32.98 3.55
3966 6141 5.240891 TGACTCAGAAAATGTGAGACCATC 58.759 41.667 11.01 0.02 43.65 3.51
4073 6248 3.595819 GCAGTCCATGTTCCTGCC 58.404 61.111 14.32 1.68 44.49 4.85
4082 6257 2.092753 CCATGTTCCTGCCACTCTATGT 60.093 50.000 0.00 0.00 0.00 2.29
4095 6270 5.105797 GCCACTCTATGTAGATCAGATCAGG 60.106 48.000 13.14 0.59 0.00 3.86
4189 6364 4.508551 TCTGCATGGGTATGAACAATCT 57.491 40.909 0.00 0.00 36.36 2.40
4258 6434 6.670695 AAATAGCACTGATTTTCCTTTGGT 57.329 33.333 0.00 0.00 0.00 3.67
4313 6489 4.615588 ATGCAGGCTATTAGAGAGAACC 57.384 45.455 0.00 0.00 0.00 3.62
4318 6494 3.964031 AGGCTATTAGAGAGAACCCACAG 59.036 47.826 0.00 0.00 0.00 3.66
4320 6496 4.038642 GGCTATTAGAGAGAACCCACAGAG 59.961 50.000 0.00 0.00 0.00 3.35
4321 6497 4.647399 GCTATTAGAGAGAACCCACAGAGT 59.353 45.833 0.00 0.00 0.00 3.24
4322 6498 5.451242 GCTATTAGAGAGAACCCACAGAGTG 60.451 48.000 0.00 0.00 0.00 3.51
4353 6533 4.840772 CGAATTCGCAGTCAAAAACAGTAG 59.159 41.667 15.93 0.00 0.00 2.57
4360 6540 5.539048 GCAGTCAAAAACAGTAGGAGTAGA 58.461 41.667 0.00 0.00 0.00 2.59
4361 6541 5.989777 GCAGTCAAAAACAGTAGGAGTAGAA 59.010 40.000 0.00 0.00 0.00 2.10
4362 6542 6.073711 GCAGTCAAAAACAGTAGGAGTAGAAC 60.074 42.308 0.00 0.00 0.00 3.01
4484 6664 1.070134 ACCACGTTCTACATGCTGTGT 59.930 47.619 0.00 1.16 44.95 3.72
5052 7232 3.922171 AGCCATTCAAGGTCTCCTAAG 57.078 47.619 0.00 0.00 31.13 2.18
5053 7233 3.185455 AGCCATTCAAGGTCTCCTAAGT 58.815 45.455 0.00 0.00 31.13 2.24
5054 7234 3.198853 AGCCATTCAAGGTCTCCTAAGTC 59.801 47.826 0.00 0.00 31.13 3.01
5055 7235 3.682999 GCCATTCAAGGTCTCCTAAGTCC 60.683 52.174 0.00 0.00 31.13 3.85
5056 7236 3.777522 CCATTCAAGGTCTCCTAAGTCCT 59.222 47.826 0.00 0.00 42.08 3.85
5057 7237 4.962995 CCATTCAAGGTCTCCTAAGTCCTA 59.037 45.833 0.00 0.00 39.76 2.94
5058 7238 5.425539 CCATTCAAGGTCTCCTAAGTCCTAA 59.574 44.000 0.00 0.00 39.76 2.69
5068 7248 7.506261 GGTCTCCTAAGTCCTAACATCTATTCA 59.494 40.741 0.00 0.00 0.00 2.57
5111 7295 9.238368 TGATGTGATCACGTATATTATAGGTGA 57.762 33.333 28.11 28.11 43.49 4.02
5142 7326 4.019681 TCGAGGTTAATCCCTGTTTCATGT 60.020 41.667 0.00 0.00 34.03 3.21
5146 7330 7.373617 AGGTTAATCCCTGTTTCATGTTTTT 57.626 32.000 0.00 0.00 36.75 1.94
5375 7559 8.693120 TTATATTACACAAATATTTCGCCCCA 57.307 30.769 0.00 0.00 40.52 4.96
5376 7560 5.923733 ATTACACAAATATTTCGCCCCAA 57.076 34.783 0.00 0.00 0.00 4.12
5548 7733 0.107703 CTCCCGGAAGCTATGTTGCA 60.108 55.000 0.73 0.00 34.99 4.08
5645 7830 3.073356 TCATTCCCCAAACTCTAACCGTT 59.927 43.478 0.00 0.00 0.00 4.44
5649 7834 5.245584 TCCCCAAACTCTAACCGTTTAAT 57.754 39.130 0.00 0.00 33.58 1.40
5771 7956 4.646492 GTCCAAATCCTATTGTTGATGGCT 59.354 41.667 0.00 0.00 0.00 4.75
5858 8043 5.984725 TGAGTCGATAAGGCCAAGAAATTA 58.015 37.500 5.01 0.00 0.00 1.40
5899 8084 3.253921 CGCTGAATATTGGCCATCATTGA 59.746 43.478 6.09 2.29 0.00 2.57
5927 8112 3.359033 TCCAGGAAATTGAATCAGCCAG 58.641 45.455 0.00 0.00 0.00 4.85
6021 8206 0.984230 TCCCACCAATGTCCACTCTC 59.016 55.000 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.807667 CTTCCGGTGCTTCGAGGATG 60.808 60.000 0.00 0.00 32.19 3.51
3 4 1.517832 CTTCCGGTGCTTCGAGGAT 59.482 57.895 0.00 0.00 32.19 3.24
6 7 2.048222 TGCTTCCGGTGCTTCGAG 60.048 61.111 19.31 2.75 0.00 4.04
9 10 1.016653 GTCTCTGCTTCCGGTGCTTC 61.017 60.000 19.31 0.54 0.00 3.86
10 11 1.004440 GTCTCTGCTTCCGGTGCTT 60.004 57.895 19.31 0.00 0.00 3.91
11 12 2.659610 GTCTCTGCTTCCGGTGCT 59.340 61.111 19.31 0.00 0.00 4.40
12 13 2.435059 GGTCTCTGCTTCCGGTGC 60.435 66.667 13.68 13.68 0.00 5.01
13 14 2.125912 CGGTCTCTGCTTCCGGTG 60.126 66.667 0.00 0.00 40.49 4.94
14 15 1.906824 TTCGGTCTCTGCTTCCGGT 60.907 57.895 0.00 0.00 43.75 5.28
15 16 1.446272 GTTCGGTCTCTGCTTCCGG 60.446 63.158 0.00 0.00 43.75 5.14
16 17 0.108615 ATGTTCGGTCTCTGCTTCCG 60.109 55.000 0.00 0.00 44.76 4.30
17 18 1.338200 ACATGTTCGGTCTCTGCTTCC 60.338 52.381 0.00 0.00 0.00 3.46
18 19 1.996191 GACATGTTCGGTCTCTGCTTC 59.004 52.381 0.00 0.00 32.54 3.86
19 20 1.338200 GGACATGTTCGGTCTCTGCTT 60.338 52.381 0.00 0.00 35.61 3.91
20 21 0.247736 GGACATGTTCGGTCTCTGCT 59.752 55.000 0.00 0.00 35.61 4.24
21 22 1.078759 CGGACATGTTCGGTCTCTGC 61.079 60.000 19.23 0.00 35.61 4.26
22 23 0.526211 TCGGACATGTTCGGTCTCTG 59.474 55.000 25.81 3.84 35.61 3.35
23 24 0.526662 GTCGGACATGTTCGGTCTCT 59.473 55.000 25.81 0.00 35.61 3.10
24 25 0.797249 CGTCGGACATGTTCGGTCTC 60.797 60.000 25.81 12.85 35.61 3.36
25 26 1.211969 CGTCGGACATGTTCGGTCT 59.788 57.895 25.81 0.00 35.61 3.85
26 27 1.804326 CCGTCGGACATGTTCGGTC 60.804 63.158 25.81 17.37 36.99 4.79
27 28 2.260434 CCGTCGGACATGTTCGGT 59.740 61.111 25.81 0.00 36.99 4.69
28 29 2.292794 ATCCCGTCGGACATGTTCGG 62.293 60.000 25.81 21.55 42.48 4.30
29 30 0.870307 GATCCCGTCGGACATGTTCG 60.870 60.000 20.90 20.90 42.48 3.95
30 31 0.174845 TGATCCCGTCGGACATGTTC 59.825 55.000 14.39 0.00 42.48 3.18
31 32 0.175760 CTGATCCCGTCGGACATGTT 59.824 55.000 14.39 0.00 42.48 2.71
32 33 0.683179 TCTGATCCCGTCGGACATGT 60.683 55.000 14.39 0.00 42.48 3.21
33 34 2.115510 TCTGATCCCGTCGGACATG 58.884 57.895 14.39 0.00 42.48 3.21
34 35 4.678423 TCTGATCCCGTCGGACAT 57.322 55.556 14.39 3.88 42.48 3.06
37 38 3.515286 GCGTCTGATCCCGTCGGA 61.515 66.667 14.39 0.00 44.33 4.55
38 39 4.570663 GGCGTCTGATCCCGTCGG 62.571 72.222 3.60 3.60 34.31 4.79
39 40 4.907034 CGGCGTCTGATCCCGTCG 62.907 72.222 8.70 8.70 45.93 5.12
42 43 4.933064 GAGCGGCGTCTGATCCCG 62.933 72.222 9.37 12.70 44.58 5.14
43 44 3.781770 CTGAGCGGCGTCTGATCCC 62.782 68.421 9.37 0.00 0.00 3.85
44 45 2.279120 CTGAGCGGCGTCTGATCC 60.279 66.667 9.37 0.00 0.00 3.36
45 46 1.587613 GTCTGAGCGGCGTCTGATC 60.588 63.158 9.37 0.00 0.00 2.92
46 47 1.877576 TTGTCTGAGCGGCGTCTGAT 61.878 55.000 9.37 0.00 0.00 2.90
47 48 2.477972 CTTGTCTGAGCGGCGTCTGA 62.478 60.000 9.37 11.31 0.00 3.27
48 49 2.049156 TTGTCTGAGCGGCGTCTG 60.049 61.111 9.37 9.15 0.00 3.51
49 50 2.259818 CTTGTCTGAGCGGCGTCT 59.740 61.111 9.37 6.10 0.00 4.18
50 51 2.811317 CCTTGTCTGAGCGGCGTC 60.811 66.667 9.37 5.62 0.00 5.19
51 52 3.303135 TCCTTGTCTGAGCGGCGT 61.303 61.111 9.37 0.00 0.00 5.68
52 53 2.811317 GTCCTTGTCTGAGCGGCG 60.811 66.667 0.51 0.51 0.00 6.46
53 54 2.811317 CGTCCTTGTCTGAGCGGC 60.811 66.667 0.00 0.00 0.00 6.53
54 55 2.125912 CCGTCCTTGTCTGAGCGG 60.126 66.667 0.00 0.00 0.00 5.52
55 56 2.811317 GCCGTCCTTGTCTGAGCG 60.811 66.667 0.00 0.00 0.00 5.03
56 57 2.811317 CGCCGTCCTTGTCTGAGC 60.811 66.667 0.00 0.00 0.00 4.26
57 58 1.444553 GTCGCCGTCCTTGTCTGAG 60.445 63.158 0.00 0.00 0.00 3.35
58 59 2.197605 TGTCGCCGTCCTTGTCTGA 61.198 57.895 0.00 0.00 0.00 3.27
59 60 2.022129 GTGTCGCCGTCCTTGTCTG 61.022 63.158 0.00 0.00 0.00 3.51
60 61 2.338984 GTGTCGCCGTCCTTGTCT 59.661 61.111 0.00 0.00 0.00 3.41
61 62 2.737376 GGTGTCGCCGTCCTTGTC 60.737 66.667 0.00 0.00 0.00 3.18
62 63 3.222354 GAGGTGTCGCCGTCCTTGT 62.222 63.158 0.00 0.00 43.70 3.16
63 64 2.432628 GAGGTGTCGCCGTCCTTG 60.433 66.667 0.00 0.00 43.70 3.61
64 65 4.052229 CGAGGTGTCGCCGTCCTT 62.052 66.667 0.00 0.00 43.70 3.36
91 92 4.692475 GTTCGGGGTGGGTGTCGG 62.692 72.222 0.00 0.00 0.00 4.79
92 93 3.622826 AGTTCGGGGTGGGTGTCG 61.623 66.667 0.00 0.00 0.00 4.35
93 94 2.032071 CAGTTCGGGGTGGGTGTC 59.968 66.667 0.00 0.00 0.00 3.67
94 95 4.265056 GCAGTTCGGGGTGGGTGT 62.265 66.667 0.00 0.00 0.00 4.16
97 98 4.410400 GAGGCAGTTCGGGGTGGG 62.410 72.222 0.00 0.00 0.00 4.61
98 99 4.410400 GGAGGCAGTTCGGGGTGG 62.410 72.222 0.00 0.00 0.00 4.61
99 100 3.322466 AGGAGGCAGTTCGGGGTG 61.322 66.667 0.00 0.00 0.00 4.61
100 101 3.322466 CAGGAGGCAGTTCGGGGT 61.322 66.667 0.00 0.00 0.00 4.95
101 102 3.003173 TCAGGAGGCAGTTCGGGG 61.003 66.667 0.00 0.00 0.00 5.73
102 103 2.581354 CTCAGGAGGCAGTTCGGG 59.419 66.667 0.00 0.00 0.00 5.14
103 104 2.125350 GCTCAGGAGGCAGTTCGG 60.125 66.667 0.00 0.00 0.00 4.30
104 105 2.507992 CGCTCAGGAGGCAGTTCG 60.508 66.667 0.00 0.00 0.00 3.95
105 106 2.817396 GCGCTCAGGAGGCAGTTC 60.817 66.667 0.00 0.00 0.00 3.01
106 107 3.630013 TGCGCTCAGGAGGCAGTT 61.630 61.111 9.73 0.00 33.12 3.16
107 108 4.385405 GTGCGCTCAGGAGGCAGT 62.385 66.667 9.73 0.00 36.05 4.40
112 113 4.103103 TCGTCGTGCGCTCAGGAG 62.103 66.667 9.73 0.00 37.72 3.69
113 114 4.400109 GTCGTCGTGCGCTCAGGA 62.400 66.667 9.73 4.70 41.07 3.86
122 123 3.626680 ATGTGGAGGCGTCGTCGTG 62.627 63.158 3.66 0.00 39.49 4.35
123 124 3.371063 ATGTGGAGGCGTCGTCGT 61.371 61.111 3.66 0.00 39.49 4.34
124 125 2.880879 CATGTGGAGGCGTCGTCG 60.881 66.667 0.00 0.00 40.37 5.12
125 126 2.509336 CCATGTGGAGGCGTCGTC 60.509 66.667 0.00 0.00 37.39 4.20
126 127 4.760047 GCCATGTGGAGGCGTCGT 62.760 66.667 2.55 0.00 43.15 4.34
137 138 1.077265 CCCTCCCACAAAGCCATGT 59.923 57.895 0.00 0.00 0.00 3.21
138 139 1.683365 CCCCTCCCACAAAGCCATG 60.683 63.158 0.00 0.00 0.00 3.66
139 140 2.772924 CCCCTCCCACAAAGCCAT 59.227 61.111 0.00 0.00 0.00 4.40
140 141 4.299796 GCCCCTCCCACAAAGCCA 62.300 66.667 0.00 0.00 0.00 4.75
208 209 4.148825 CTCTTCGGCGGAGGGTGG 62.149 72.222 16.51 0.00 0.00 4.61
209 210 4.148825 CCTCTTCGGCGGAGGGTG 62.149 72.222 20.42 6.72 44.71 4.61
217 218 3.832492 AGCTCGCTCCTCTTCGGC 61.832 66.667 0.00 0.00 0.00 5.54
218 219 2.103934 CAGCTCGCTCCTCTTCGG 59.896 66.667 0.00 0.00 0.00 4.30
219 220 1.063972 CTCAGCTCGCTCCTCTTCG 59.936 63.158 0.00 0.00 0.00 3.79
220 221 1.226945 GCTCAGCTCGCTCCTCTTC 60.227 63.158 0.00 0.00 0.00 2.87
221 222 2.720134 GGCTCAGCTCGCTCCTCTT 61.720 63.158 0.00 0.00 0.00 2.85
222 223 3.146913 GGCTCAGCTCGCTCCTCT 61.147 66.667 0.00 0.00 0.00 3.69
223 224 4.219999 GGGCTCAGCTCGCTCCTC 62.220 72.222 0.00 0.00 0.00 3.71
243 244 3.465403 CTGGGCCTCTCAGGGTCG 61.465 72.222 4.53 0.00 35.37 4.79
244 245 1.492993 AAACTGGGCCTCTCAGGGTC 61.493 60.000 4.53 0.00 35.37 4.46
245 246 1.464198 AAACTGGGCCTCTCAGGGT 60.464 57.895 4.53 0.00 35.37 4.34
246 247 1.301293 GAAACTGGGCCTCTCAGGG 59.699 63.158 4.53 0.00 35.37 4.45
247 248 1.078848 CGAAACTGGGCCTCTCAGG 60.079 63.158 4.53 0.00 38.80 3.86
248 249 0.108424 CTCGAAACTGGGCCTCTCAG 60.108 60.000 4.53 4.00 38.16 3.35
249 250 0.541998 TCTCGAAACTGGGCCTCTCA 60.542 55.000 4.53 0.00 0.00 3.27
250 251 0.108567 GTCTCGAAACTGGGCCTCTC 60.109 60.000 4.53 0.00 0.00 3.20
251 252 1.878656 CGTCTCGAAACTGGGCCTCT 61.879 60.000 4.53 0.00 0.00 3.69
252 253 1.446272 CGTCTCGAAACTGGGCCTC 60.446 63.158 4.53 0.00 0.00 4.70
253 254 1.258445 ATCGTCTCGAAACTGGGCCT 61.258 55.000 4.53 0.00 39.99 5.19
254 255 0.458669 TATCGTCTCGAAACTGGGCC 59.541 55.000 0.00 0.00 39.99 5.80
255 256 1.536284 CCTATCGTCTCGAAACTGGGC 60.536 57.143 0.00 0.00 39.99 5.36
256 257 1.536284 GCCTATCGTCTCGAAACTGGG 60.536 57.143 0.00 0.00 39.99 4.45
257 258 1.536284 GGCCTATCGTCTCGAAACTGG 60.536 57.143 0.00 0.00 39.99 4.00
258 259 1.841450 GGCCTATCGTCTCGAAACTG 58.159 55.000 0.00 0.00 39.99 3.16
259 260 0.381089 CGGCCTATCGTCTCGAAACT 59.619 55.000 0.00 0.00 39.99 2.66
260 261 1.207377 GCGGCCTATCGTCTCGAAAC 61.207 60.000 0.00 0.00 39.99 2.78
261 262 1.065273 GCGGCCTATCGTCTCGAAA 59.935 57.895 0.00 0.00 39.99 3.46
262 263 1.783031 GAGCGGCCTATCGTCTCGAA 61.783 60.000 0.00 0.00 39.99 3.71
263 264 2.203167 AGCGGCCTATCGTCTCGA 60.203 61.111 0.00 0.00 41.13 4.04
264 265 2.252855 GAGCGGCCTATCGTCTCG 59.747 66.667 0.00 0.00 0.00 4.04
265 266 2.646143 GGAGCGGCCTATCGTCTC 59.354 66.667 0.00 0.00 34.80 3.36
266 267 2.913060 GGGAGCGGCCTATCGTCT 60.913 66.667 0.00 0.00 36.66 4.18
267 268 4.344474 CGGGAGCGGCCTATCGTC 62.344 72.222 0.00 0.00 36.66 4.20
291 292 4.831307 CCTTCGGTCTCGTCGGCG 62.831 72.222 1.15 1.15 37.69 6.46
292 293 3.745803 ACCTTCGGTCTCGTCGGC 61.746 66.667 0.00 0.00 37.69 5.54
293 294 2.178521 CACCTTCGGTCTCGTCGG 59.821 66.667 0.00 0.00 37.69 4.79
294 295 2.178521 CCACCTTCGGTCTCGTCG 59.821 66.667 0.00 0.00 37.69 5.12
295 296 2.572284 CCCACCTTCGGTCTCGTC 59.428 66.667 0.00 0.00 37.69 4.20
296 297 3.692406 GCCCACCTTCGGTCTCGT 61.692 66.667 0.00 0.00 37.69 4.18
297 298 3.382832 AGCCCACCTTCGGTCTCG 61.383 66.667 0.00 0.00 31.02 4.04
298 299 2.266055 CAGCCCACCTTCGGTCTC 59.734 66.667 0.00 0.00 31.02 3.36
299 300 4.021925 GCAGCCCACCTTCGGTCT 62.022 66.667 0.00 0.00 31.02 3.85
303 304 3.376935 ATCTCGCAGCCCACCTTCG 62.377 63.158 0.00 0.00 0.00 3.79
304 305 1.522580 GATCTCGCAGCCCACCTTC 60.523 63.158 0.00 0.00 0.00 3.46
305 306 2.586792 GATCTCGCAGCCCACCTT 59.413 61.111 0.00 0.00 0.00 3.50
306 307 3.474570 GGATCTCGCAGCCCACCT 61.475 66.667 0.00 0.00 0.00 4.00
307 308 3.746949 CTGGATCTCGCAGCCCACC 62.747 68.421 0.00 0.00 0.00 4.61
308 309 2.202987 CTGGATCTCGCAGCCCAC 60.203 66.667 0.00 0.00 0.00 4.61
309 310 1.964608 CTTCTGGATCTCGCAGCCCA 61.965 60.000 0.00 0.00 0.00 5.36
310 311 1.227497 CTTCTGGATCTCGCAGCCC 60.227 63.158 0.00 0.00 0.00 5.19
311 312 1.886777 GCTTCTGGATCTCGCAGCC 60.887 63.158 0.00 0.00 0.00 4.85
312 313 1.886777 GGCTTCTGGATCTCGCAGC 60.887 63.158 0.00 0.00 0.00 5.25
313 314 0.106335 ATGGCTTCTGGATCTCGCAG 59.894 55.000 0.00 0.00 0.00 5.18
314 315 1.342496 CTATGGCTTCTGGATCTCGCA 59.658 52.381 0.00 0.00 0.00 5.10
315 316 1.337635 CCTATGGCTTCTGGATCTCGC 60.338 57.143 0.00 0.00 0.00 5.03
316 317 1.337635 GCCTATGGCTTCTGGATCTCG 60.338 57.143 0.73 0.00 46.69 4.04
317 318 2.470983 GCCTATGGCTTCTGGATCTC 57.529 55.000 0.73 0.00 46.69 2.75
338 339 4.785453 GGTGGCTCTTCCCGGCTG 62.785 72.222 0.00 0.00 0.00 4.85
343 344 3.787001 CTCCCGGTGGCTCTTCCC 61.787 72.222 0.00 0.00 0.00 3.97
344 345 2.683933 TCTCCCGGTGGCTCTTCC 60.684 66.667 0.00 0.00 0.00 3.46
345 346 1.671901 CTCTCTCCCGGTGGCTCTTC 61.672 65.000 0.00 0.00 0.00 2.87
346 347 1.684049 CTCTCTCCCGGTGGCTCTT 60.684 63.158 0.00 0.00 0.00 2.85
347 348 2.043450 CTCTCTCCCGGTGGCTCT 60.043 66.667 0.00 0.00 0.00 4.09
348 349 3.844090 GCTCTCTCCCGGTGGCTC 61.844 72.222 0.00 0.00 0.00 4.70
386 387 3.461773 ACCCCATCTCCGCTGTCG 61.462 66.667 0.00 0.00 0.00 4.35
387 388 2.187946 CACCCCATCTCCGCTGTC 59.812 66.667 0.00 0.00 0.00 3.51
388 389 3.402681 CCACCCCATCTCCGCTGT 61.403 66.667 0.00 0.00 0.00 4.40
389 390 3.083349 TCCACCCCATCTCCGCTG 61.083 66.667 0.00 0.00 0.00 5.18
390 391 3.083997 GTCCACCCCATCTCCGCT 61.084 66.667 0.00 0.00 0.00 5.52
391 392 4.530857 CGTCCACCCCATCTCCGC 62.531 72.222 0.00 0.00 0.00 5.54
392 393 4.530857 GCGTCCACCCCATCTCCG 62.531 72.222 0.00 0.00 0.00 4.63
393 394 4.176752 GGCGTCCACCCCATCTCC 62.177 72.222 0.00 0.00 0.00 3.71
394 395 4.530857 CGGCGTCCACCCCATCTC 62.531 72.222 0.00 0.00 0.00 2.75
411 412 4.840005 GGCTGCTACTCCGGCACC 62.840 72.222 0.00 0.00 38.87 5.01
418 419 4.129737 TCACGCCGGCTGCTACTC 62.130 66.667 26.68 0.00 38.05 2.59
419 420 4.135153 CTCACGCCGGCTGCTACT 62.135 66.667 26.68 0.00 38.05 2.57
467 468 4.043100 CCCCTTCCCGTTCCCCAC 62.043 72.222 0.00 0.00 0.00 4.61
470 471 2.694992 ATCCCCCTTCCCGTTCCC 60.695 66.667 0.00 0.00 0.00 3.97
471 472 2.595655 CATCCCCCTTCCCGTTCC 59.404 66.667 0.00 0.00 0.00 3.62
472 473 2.595655 CCATCCCCCTTCCCGTTC 59.404 66.667 0.00 0.00 0.00 3.95
473 474 3.021263 CCCATCCCCCTTCCCGTT 61.021 66.667 0.00 0.00 0.00 4.44
474 475 4.033251 TCCCATCCCCCTTCCCGT 62.033 66.667 0.00 0.00 0.00 5.28
475 476 3.171388 CTCCCATCCCCCTTCCCG 61.171 72.222 0.00 0.00 0.00 5.14
476 477 2.778717 CCTCCCATCCCCCTTCCC 60.779 72.222 0.00 0.00 0.00 3.97
477 478 2.778717 CCCTCCCATCCCCCTTCC 60.779 72.222 0.00 0.00 0.00 3.46
478 479 2.778717 CCCCTCCCATCCCCCTTC 60.779 72.222 0.00 0.00 0.00 3.46
479 480 4.472310 CCCCCTCCCATCCCCCTT 62.472 72.222 0.00 0.00 0.00 3.95
484 485 4.880426 TCTCGCCCCCTCCCATCC 62.880 72.222 0.00 0.00 0.00 3.51
485 486 3.237741 CTCTCGCCCCCTCCCATC 61.238 72.222 0.00 0.00 0.00 3.51
486 487 3.765257 CTCTCTCGCCCCCTCCCAT 62.765 68.421 0.00 0.00 0.00 4.00
487 488 4.465446 CTCTCTCGCCCCCTCCCA 62.465 72.222 0.00 0.00 0.00 4.37
497 498 1.583967 CGGTTGTAGCGCTCTCTCG 60.584 63.158 16.34 9.53 30.39 4.04
498 499 1.226717 CCGGTTGTAGCGCTCTCTC 60.227 63.158 16.34 3.83 37.85 3.20
499 500 1.935327 GACCGGTTGTAGCGCTCTCT 61.935 60.000 16.34 0.00 37.85 3.10
500 501 1.516603 GACCGGTTGTAGCGCTCTC 60.517 63.158 16.34 9.66 37.85 3.20
501 502 2.572284 GACCGGTTGTAGCGCTCT 59.428 61.111 16.34 0.00 37.85 4.09
502 503 2.879462 CGACCGGTTGTAGCGCTC 60.879 66.667 16.34 6.54 37.85 5.03
503 504 1.865788 TAACGACCGGTTGTAGCGCT 61.866 55.000 27.79 17.26 39.75 5.92
504 505 0.803380 ATAACGACCGGTTGTAGCGC 60.803 55.000 27.79 0.00 39.75 5.92
505 506 1.322338 CAATAACGACCGGTTGTAGCG 59.678 52.381 27.79 18.95 39.75 4.26
506 507 1.061566 GCAATAACGACCGGTTGTAGC 59.938 52.381 27.79 22.76 39.75 3.58
507 508 1.322338 CGCAATAACGACCGGTTGTAG 59.678 52.381 27.79 17.76 39.75 2.74
508 509 1.348276 CGCAATAACGACCGGTTGTA 58.652 50.000 27.79 15.79 39.75 2.41
509 510 1.293267 CCGCAATAACGACCGGTTGT 61.293 55.000 22.42 22.42 39.75 3.32
510 511 1.422269 CCGCAATAACGACCGGTTG 59.578 57.895 20.86 20.86 39.75 3.77
511 512 3.879159 CCGCAATAACGACCGGTT 58.121 55.556 9.42 0.00 42.75 4.44
513 514 0.738412 AAGACCGCAATAACGACCGG 60.738 55.000 0.00 0.00 45.80 5.28
514 515 0.643820 GAAGACCGCAATAACGACCG 59.356 55.000 0.00 0.00 34.06 4.79
515 516 1.717194 TGAAGACCGCAATAACGACC 58.283 50.000 0.00 0.00 34.06 4.79
516 517 3.185797 ACTTTGAAGACCGCAATAACGAC 59.814 43.478 0.00 0.00 34.06 4.34
517 518 3.185594 CACTTTGAAGACCGCAATAACGA 59.814 43.478 0.00 0.00 34.06 3.85
518 519 3.059188 ACACTTTGAAGACCGCAATAACG 60.059 43.478 0.00 0.00 0.00 3.18
519 520 4.483476 ACACTTTGAAGACCGCAATAAC 57.517 40.909 0.00 0.00 0.00 1.89
520 521 6.811253 ATAACACTTTGAAGACCGCAATAA 57.189 33.333 0.00 0.00 0.00 1.40
521 522 6.036735 GCTATAACACTTTGAAGACCGCAATA 59.963 38.462 0.00 0.00 0.00 1.90
522 523 5.163754 GCTATAACACTTTGAAGACCGCAAT 60.164 40.000 0.00 0.00 0.00 3.56
523 524 4.153475 GCTATAACACTTTGAAGACCGCAA 59.847 41.667 0.00 0.00 0.00 4.85
524 525 3.682858 GCTATAACACTTTGAAGACCGCA 59.317 43.478 0.00 0.00 0.00 5.69
525 526 3.682858 TGCTATAACACTTTGAAGACCGC 59.317 43.478 0.00 0.00 0.00 5.68
526 527 6.422776 AATGCTATAACACTTTGAAGACCG 57.577 37.500 0.00 0.00 0.00 4.79
527 528 8.915654 CAAAAATGCTATAACACTTTGAAGACC 58.084 33.333 6.66 0.00 31.78 3.85
528 529 8.427774 GCAAAAATGCTATAACACTTTGAAGAC 58.572 33.333 13.11 0.00 31.78 3.01
529 530 8.359642 AGCAAAAATGCTATAACACTTTGAAGA 58.640 29.630 13.11 0.00 44.28 2.87
530 531 8.524870 AGCAAAAATGCTATAACACTTTGAAG 57.475 30.769 13.11 0.00 44.28 3.02
531 532 8.885494 AAGCAAAAATGCTATAACACTTTGAA 57.115 26.923 13.11 0.00 45.54 2.69
532 533 8.885494 AAAGCAAAAATGCTATAACACTTTGA 57.115 26.923 13.11 0.00 45.54 2.69
543 544 8.769891 GCCTAAGTTTTTAAAGCAAAAATGCTA 58.230 29.630 3.44 0.00 45.39 3.49
544 545 7.281999 TGCCTAAGTTTTTAAAGCAAAAATGCT 59.718 29.630 0.00 0.00 45.39 3.79
545 546 7.413644 TGCCTAAGTTTTTAAAGCAAAAATGC 58.586 30.769 0.00 0.00 45.39 3.56
546 547 9.949174 AATGCCTAAGTTTTTAAAGCAAAAATG 57.051 25.926 0.88 0.00 45.39 2.32
547 548 9.949174 CAATGCCTAAGTTTTTAAAGCAAAAAT 57.051 25.926 0.88 0.00 45.39 1.82
548 549 8.401709 CCAATGCCTAAGTTTTTAAAGCAAAAA 58.598 29.630 0.88 0.00 42.47 1.94
549 550 7.770897 TCCAATGCCTAAGTTTTTAAAGCAAAA 59.229 29.630 0.88 0.00 34.01 2.44
550 551 7.275920 TCCAATGCCTAAGTTTTTAAAGCAAA 58.724 30.769 0.88 0.00 34.01 3.68
551 552 6.821388 TCCAATGCCTAAGTTTTTAAAGCAA 58.179 32.000 0.88 0.00 34.01 3.91
552 553 6.266558 TCTCCAATGCCTAAGTTTTTAAAGCA 59.733 34.615 0.00 0.00 34.50 3.91
553 554 6.687604 TCTCCAATGCCTAAGTTTTTAAAGC 58.312 36.000 0.00 0.00 0.00 3.51
554 555 7.276438 GCATCTCCAATGCCTAAGTTTTTAAAG 59.724 37.037 0.00 0.00 39.01 1.85
555 556 7.096551 GCATCTCCAATGCCTAAGTTTTTAAA 58.903 34.615 0.00 0.00 39.01 1.52
556 557 6.630071 GCATCTCCAATGCCTAAGTTTTTAA 58.370 36.000 0.00 0.00 39.01 1.52
557 558 6.207691 GCATCTCCAATGCCTAAGTTTTTA 57.792 37.500 0.00 0.00 39.01 1.52
558 559 5.077134 GCATCTCCAATGCCTAAGTTTTT 57.923 39.130 0.00 0.00 39.01 1.94
559 560 4.725790 GCATCTCCAATGCCTAAGTTTT 57.274 40.909 0.00 0.00 39.01 2.43
582 583 4.937193 CTGCTCCTCCTCAGCAAG 57.063 61.111 0.00 0.00 46.22 4.01
591 592 0.395586 TCTCTCTCCTGCTGCTCCTC 60.396 60.000 0.00 0.00 0.00 3.71
594 595 1.433064 CGTCTCTCTCCTGCTGCTC 59.567 63.158 0.00 0.00 0.00 4.26
603 604 3.825143 ACTACTCCTACCGTCTCTCTC 57.175 52.381 0.00 0.00 0.00 3.20
604 605 3.068024 CGTACTACTCCTACCGTCTCTCT 59.932 52.174 0.00 0.00 0.00 3.10
605 606 3.380142 CGTACTACTCCTACCGTCTCTC 58.620 54.545 0.00 0.00 0.00 3.20
631 632 6.035368 TGATCAAATTTACCACCAACATGG 57.965 37.500 0.00 0.00 46.10 3.66
697 698 1.546029 TCTCCGACAATGTGAGTGAGG 59.454 52.381 0.00 0.00 0.00 3.86
701 702 1.821753 CTCCTCTCCGACAATGTGAGT 59.178 52.381 0.00 0.00 0.00 3.41
730 731 3.054361 CCCCATTCCAGTACTAGCTTGTT 60.054 47.826 6.03 0.00 0.00 2.83
755 756 1.067354 GGGAAGAAAATGCTGCCTGTG 60.067 52.381 0.00 0.00 33.72 3.66
849 850 0.397254 GAGGACCGGAATGGAGGAGA 60.397 60.000 9.46 0.00 42.00 3.71
906 907 2.075426 GAGTGGTGTTGGTGGCAAGC 62.075 60.000 0.00 0.00 0.00 4.01
948 951 2.807107 AAGGACTGTGCACCGCTGA 61.807 57.895 15.69 0.00 0.00 4.26
984 1001 2.549778 CCCCATTGCTTCTAGCTAGCTC 60.550 54.545 23.26 7.00 42.97 4.09
1243 1264 2.819595 ACCGCCGTGATGATGTGC 60.820 61.111 0.00 0.00 0.00 4.57
1683 1709 4.082463 GGTTGGAGTGTTTGAGACAAAACA 60.082 41.667 0.00 0.00 45.38 2.83
1684 1710 4.082463 TGGTTGGAGTGTTTGAGACAAAAC 60.082 41.667 0.00 0.00 40.65 2.43
1685 1711 4.082845 TGGTTGGAGTGTTTGAGACAAAA 58.917 39.130 0.00 0.00 40.65 2.44
1767 1793 1.274167 AGCATGCCATGAAAACAGGTG 59.726 47.619 15.66 0.00 0.00 4.00
1827 1854 5.542779 AGTGACAACTAATTCCAGACAGAC 58.457 41.667 0.00 0.00 33.79 3.51
1830 1857 4.279922 TCGAGTGACAACTAATTCCAGACA 59.720 41.667 0.00 0.00 36.52 3.41
1848 1875 1.742268 GCTAGGTACTTCCGTTCGAGT 59.258 52.381 0.00 0.00 41.75 4.18
1873 1900 8.431406 TTGTCGCTCAAATGGATATATCCTGTG 61.431 40.741 28.09 22.00 39.22 3.66
1874 1901 6.464322 TTGTCGCTCAAATGGATATATCCTGT 60.464 38.462 28.09 16.38 39.22 4.00
1875 1902 5.934043 TTGTCGCTCAAATGGATATATCCTG 59.066 40.000 28.09 19.57 39.22 3.86
1876 1903 5.934625 GTTGTCGCTCAAATGGATATATCCT 59.065 40.000 28.09 13.88 41.50 3.24
1882 1909 6.704493 GGTATTAGTTGTCGCTCAAATGGATA 59.296 38.462 4.06 1.43 37.81 2.59
1905 1932 4.165372 ACCAAATAACATCCTACATCCGGT 59.835 41.667 0.00 0.00 0.00 5.28
1934 1961 8.635765 ACATAGCTTTGTTGGATTTTCTTCTA 57.364 30.769 3.73 0.00 0.00 2.10
1944 1971 1.349688 ACCGGACATAGCTTTGTTGGA 59.650 47.619 25.51 0.00 32.66 3.53
1946 1973 4.000988 AGTAACCGGACATAGCTTTGTTG 58.999 43.478 9.46 7.28 0.00 3.33
1947 1974 4.281898 AGTAACCGGACATAGCTTTGTT 57.718 40.909 9.46 0.00 0.00 2.83
1949 1976 4.369182 CCTAGTAACCGGACATAGCTTTG 58.631 47.826 9.46 2.27 0.00 2.77
1960 1987 3.538591 GGTTCAAATCCCTAGTAACCGG 58.461 50.000 0.00 0.00 0.00 5.28
1997 2024 2.137177 ATCAACCAACCCCCTCGTGG 62.137 60.000 0.00 0.00 0.00 4.94
2039 2066 4.379652 GGAATTAATCCCGCCGTTACTAA 58.620 43.478 0.00 0.00 43.00 2.24
2071 2098 2.092049 ACCGGAAAAACAACCTCTCCTT 60.092 45.455 9.46 0.00 0.00 3.36
2098 2125 1.553690 ATCTCCTCACAACCCCACGG 61.554 60.000 0.00 0.00 0.00 4.94
2114 2141 5.395768 CGGAGATAGAAACCCAGTCAAATCT 60.396 44.000 0.00 0.00 0.00 2.40
2135 2162 1.205966 ATCCGGTTATTCCCAACGGA 58.794 50.000 0.00 6.57 36.37 4.69
2137 2164 2.867975 GTGTATCCGGTTATTCCCAACG 59.132 50.000 0.00 0.00 0.00 4.10
2140 2167 6.955267 TCATATAGTGTATCCGGTTATTCCCA 59.045 38.462 0.00 0.00 0.00 4.37
2147 2174 8.242053 CGTCTATTTCATATAGTGTATCCGGTT 58.758 37.037 0.00 0.00 0.00 4.44
2168 2195 3.640029 GGACAGGGATTTATCACCGTCTA 59.360 47.826 7.95 0.00 32.41 2.59
2170 2197 2.169769 TGGACAGGGATTTATCACCGTC 59.830 50.000 0.61 0.61 0.00 4.79
2172 2199 2.485479 CCTGGACAGGGATTTATCACCG 60.485 54.545 10.55 0.00 44.87 4.94
2202 2229 1.101049 CAAAACACCGTGGGTCAGCT 61.101 55.000 3.03 0.00 31.02 4.24
2205 2232 0.748729 GGTCAAAACACCGTGGGTCA 60.749 55.000 3.03 0.00 31.02 4.02
2249 2278 1.299541 AGCAATTAGGCATCGTTCGG 58.700 50.000 0.00 0.00 35.83 4.30
2274 2303 4.285003 AGCCACGGCATACACCTATATTAA 59.715 41.667 11.35 0.00 44.88 1.40
2296 2325 9.994432 GAATATTTTCCTTACTGACATTGACAG 57.006 33.333 13.44 13.44 40.68 3.51
2308 2337 6.677187 GCCAACCTCGTGAATATTTTCCTTAC 60.677 42.308 0.00 0.00 0.00 2.34
2317 2346 4.481368 TGTAAGCCAACCTCGTGAATAT 57.519 40.909 0.00 0.00 0.00 1.28
2324 2353 5.949735 ACAATAATTTGTAAGCCAACCTCG 58.050 37.500 0.00 0.00 44.22 4.63
2392 2421 7.430441 TCTTTGCTTTTGGGAGTATAAACAAC 58.570 34.615 0.00 0.00 0.00 3.32
2446 2475 8.856153 ACCAAAAATTGAACTAAAACCACTTT 57.144 26.923 0.00 0.00 0.00 2.66
2447 2476 8.097662 TGACCAAAAATTGAACTAAAACCACTT 58.902 29.630 0.00 0.00 0.00 3.16
2463 2492 8.028938 GCATAGTGTAGACAAATGACCAAAAAT 58.971 33.333 8.88 0.00 0.00 1.82
2477 2600 4.822026 ACTTTGACTGGCATAGTGTAGAC 58.178 43.478 5.77 0.00 40.53 2.59
2559 2682 5.111293 AGCACTTTTGAACTGTGAAATTGG 58.889 37.500 0.00 0.00 33.95 3.16
2592 2715 5.758784 GCAAAAGTAGTACTGTCTGGTCTTT 59.241 40.000 5.39 0.00 0.00 2.52
2686 2809 4.381292 GCCAGTAGTCACCAATAAGTACGT 60.381 45.833 0.00 0.00 0.00 3.57
2688 2811 5.080969 TGCCAGTAGTCACCAATAAGTAC 57.919 43.478 0.00 0.00 0.00 2.73
2808 4754 3.812053 GCATCGCCTTGATTAGATGTTCT 59.188 43.478 6.23 0.00 41.64 3.01
3071 5017 7.592938 TGAATTGAAAGCCAAAGTGTATGTAG 58.407 34.615 0.00 0.00 38.43 2.74
3076 5022 6.815089 ACATTGAATTGAAAGCCAAAGTGTA 58.185 32.000 0.00 0.00 38.43 2.90
3077 5023 5.673514 ACATTGAATTGAAAGCCAAAGTGT 58.326 33.333 0.00 0.00 38.43 3.55
3078 5024 7.652909 TCTTACATTGAATTGAAAGCCAAAGTG 59.347 33.333 0.00 0.00 38.43 3.16
3090 5222 7.572523 TTAGAGCCCATCTTACATTGAATTG 57.427 36.000 0.00 0.00 39.64 2.32
3132 5264 8.362464 TCGTATATCCATTAGCATCCTAAAGT 57.638 34.615 0.00 0.00 37.12 2.66
3133 5265 9.307121 CTTCGTATATCCATTAGCATCCTAAAG 57.693 37.037 0.00 0.00 37.12 1.85
3158 5292 8.950210 GCACATGATATGCCAAAATATACTACT 58.050 33.333 0.00 0.00 37.08 2.57
3159 5293 8.729756 TGCACATGATATGCCAAAATATACTAC 58.270 33.333 0.00 0.00 42.69 2.73
3160 5294 8.860780 TGCACATGATATGCCAAAATATACTA 57.139 30.769 0.00 0.00 42.69 1.82
3161 5295 7.764141 TGCACATGATATGCCAAAATATACT 57.236 32.000 0.00 0.00 42.69 2.12
3171 5305 8.597662 AATTATTTTCTTGCACATGATATGCC 57.402 30.769 0.00 0.00 42.69 4.40
3192 5326 7.103641 GTCAGGACCATGTAGAGAACAAATTA 58.896 38.462 0.00 0.00 42.70 1.40
3193 5327 5.940470 GTCAGGACCATGTAGAGAACAAATT 59.060 40.000 0.00 0.00 42.70 1.82
3224 5358 8.749026 TCCTTACAAAGTTATGGTTTGTACAA 57.251 30.769 3.59 3.59 45.55 2.41
3548 5708 2.914695 TGCATCATGATCCATCGACA 57.085 45.000 4.86 0.00 0.00 4.35
3611 5771 6.932960 TCAGTCACCAATGCAAGATCTATATG 59.067 38.462 0.00 0.00 0.00 1.78
3615 5775 4.824479 TCAGTCACCAATGCAAGATCTA 57.176 40.909 0.00 0.00 0.00 1.98
3617 5777 4.397103 TCAATCAGTCACCAATGCAAGATC 59.603 41.667 0.00 0.00 0.00 2.75
3624 5784 5.775686 ACAACAATCAATCAGTCACCAATG 58.224 37.500 0.00 0.00 0.00 2.82
3707 5867 2.095212 GTCCTCCAAATTTTCTCACGCC 60.095 50.000 0.00 0.00 0.00 5.68
3709 5869 2.806244 ACGTCCTCCAAATTTTCTCACG 59.194 45.455 0.00 0.00 0.00 4.35
3830 5990 9.871238 TCTATTTCGATCATAAATAACTAGGGC 57.129 33.333 10.05 0.00 30.53 5.19
3870 6030 8.905660 ACTACGTCTAGTCATATGAATGTAGT 57.094 34.615 22.98 22.98 33.39 2.73
3872 6032 9.557061 AGAACTACGTCTAGTCATATGAATGTA 57.443 33.333 15.68 10.58 31.42 2.29
3890 6050 6.628185 ACTACTATGGTTTCCAAGAACTACG 58.372 40.000 0.00 0.00 36.95 3.51
3966 6141 1.078426 GATCCAACAGGTCACGGGG 60.078 63.158 0.00 0.00 0.00 5.73
4073 6248 5.711506 AGCCTGATCTGATCTACATAGAGTG 59.288 44.000 17.82 2.44 35.50 3.51
4082 6257 4.043435 TGCCTAGTAGCCTGATCTGATCTA 59.957 45.833 17.82 4.75 0.00 1.98
4151 6326 1.227853 GAACCTGCACCGTGGAGTT 60.228 57.895 17.69 12.01 33.66 3.01
4258 6434 0.885879 ACGACATTCGCACTGGTCTA 59.114 50.000 0.00 0.00 45.12 2.59
4318 6494 1.529826 GCGAATTCGACATTGCCACTC 60.530 52.381 31.01 5.03 43.02 3.51
4320 6496 0.167908 TGCGAATTCGACATTGCCAC 59.832 50.000 31.01 10.39 43.02 5.01
4321 6497 0.447406 CTGCGAATTCGACATTGCCA 59.553 50.000 31.01 15.66 43.02 4.92
4322 6498 0.447801 ACTGCGAATTCGACATTGCC 59.552 50.000 31.01 11.83 43.02 4.52
4323 6499 1.128507 TGACTGCGAATTCGACATTGC 59.871 47.619 31.01 17.54 43.02 3.56
4369 6549 5.721000 TCCTGCACCAAATGAAATCCTTTAT 59.279 36.000 0.00 0.00 0.00 1.40
4736 6916 3.846430 GGGCTAACCGGGACCTCG 61.846 72.222 6.32 0.00 36.48 4.63
5052 7232 5.755861 GCCTTGTCTGAATAGATGTTAGGAC 59.244 44.000 0.00 0.00 34.94 3.85
5053 7233 5.425217 TGCCTTGTCTGAATAGATGTTAGGA 59.575 40.000 0.00 0.00 34.94 2.94
5054 7234 5.674525 TGCCTTGTCTGAATAGATGTTAGG 58.325 41.667 0.00 0.00 34.94 2.69
5055 7235 6.293298 GCATGCCTTGTCTGAATAGATGTTAG 60.293 42.308 6.36 0.00 34.94 2.34
5056 7236 5.528690 GCATGCCTTGTCTGAATAGATGTTA 59.471 40.000 6.36 0.00 34.94 2.41
5057 7237 4.337555 GCATGCCTTGTCTGAATAGATGTT 59.662 41.667 6.36 0.00 34.94 2.71
5058 7238 3.881688 GCATGCCTTGTCTGAATAGATGT 59.118 43.478 6.36 0.00 34.94 3.06
5068 7248 3.211865 CATCACTATGCATGCCTTGTCT 58.788 45.455 16.68 0.00 0.00 3.41
5110 7294 3.431905 GGGATTAACCTCGACCCTTCTTC 60.432 52.174 0.00 0.00 37.75 2.87
5111 7295 2.504585 GGGATTAACCTCGACCCTTCTT 59.495 50.000 0.00 0.00 37.75 2.52
5112 7296 2.117051 GGGATTAACCTCGACCCTTCT 58.883 52.381 0.00 0.00 37.75 2.85
5375 7559 0.381801 CTTCGCTGTGTTGCCTTGTT 59.618 50.000 0.00 0.00 0.00 2.83
5376 7560 2.024918 CTTCGCTGTGTTGCCTTGT 58.975 52.632 0.00 0.00 0.00 3.16
5548 7733 1.507140 TTCAGTCAAGGAGTGGTGGT 58.493 50.000 1.56 0.00 34.12 4.16
5645 7830 6.778821 TCACCTTCTCTTCCAATGTCATTAA 58.221 36.000 0.00 0.00 0.00 1.40
5649 7834 3.557898 GCTCACCTTCTCTTCCAATGTCA 60.558 47.826 0.00 0.00 0.00 3.58
5899 8084 5.266788 TGATTCAATTTCCTGGAAGCTCAT 58.733 37.500 9.42 0.00 0.00 2.90
5927 8112 3.282374 ATTCACCTCAACCCCGGCC 62.282 63.158 0.00 0.00 0.00 6.13
5961 8146 1.578583 CCGAGTTCGTCAACCTTTGT 58.421 50.000 0.48 0.00 37.74 2.83
6021 8206 6.423905 CCTTACATAATAACACATGGGTCTCG 59.576 42.308 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.