Multiple sequence alignment - TraesCS2B01G266000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G266000 chr2B 100.000 3923 0 0 1 3923 358331825 358335747 0.000000e+00 7245
1 TraesCS2B01G266000 chr2B 83.721 215 33 2 390 604 746354974 746355186 6.650000e-48 202
2 TraesCS2B01G266000 chr2D 94.355 2356 69 25 769 3063 302779255 302776903 0.000000e+00 3555
3 TraesCS2B01G266000 chr2D 94.156 308 18 0 87 394 302779684 302779377 1.650000e-128 470
4 TraesCS2B01G266000 chr2D 86.770 257 29 2 3665 3920 302774687 302774435 8.300000e-72 281
5 TraesCS2B01G266000 chr2D 95.238 126 4 2 607 732 302779383 302779260 8.600000e-47 198
6 TraesCS2B01G266000 chr2D 88.333 120 13 1 2085 2203 448206757 448206876 4.090000e-30 143
7 TraesCS2B01G266000 chr2D 80.117 171 24 9 434 604 584297468 584297628 6.890000e-23 119
8 TraesCS2B01G266000 chr2A 96.535 1212 42 0 1797 3008 380746003 380744792 0.000000e+00 2006
9 TraesCS2B01G266000 chr2A 96.162 938 29 6 865 1801 380746970 380746039 0.000000e+00 1526
10 TraesCS2B01G266000 chr2A 88.398 724 80 3 3199 3918 380737854 380737131 0.000000e+00 869
11 TraesCS2B01G266000 chr2A 92.581 310 22 1 86 394 380747540 380747231 1.000000e-120 444
12 TraesCS2B01G266000 chr2A 94.262 122 6 1 607 728 380747237 380747117 6.690000e-43 185
13 TraesCS2B01G266000 chr2A 92.632 95 4 2 769 862 380747108 380747016 2.460000e-27 134
14 TraesCS2B01G266000 chr5B 84.434 212 27 6 395 604 639733569 639733776 1.850000e-48 204
15 TraesCS2B01G266000 chr5B 81.944 216 34 5 394 608 45352090 45351879 1.120000e-40 178
16 TraesCS2B01G266000 chr4A 83.796 216 25 6 395 604 61361992 61361781 3.090000e-46 196
17 TraesCS2B01G266000 chr4A 82.629 213 28 7 395 604 29459452 29459658 3.110000e-41 180
18 TraesCS2B01G266000 chr5A 83.491 212 29 6 397 605 699314506 699314298 4.000000e-45 193
19 TraesCS2B01G266000 chr3B 82.464 211 35 1 397 605 171801231 171801021 2.410000e-42 183
20 TraesCS2B01G266000 chr6D 83.117 154 23 3 395 547 447005062 447005213 1.900000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G266000 chr2B 358331825 358335747 3922 False 7245 7245 100.00000 1 3923 1 chr2B.!!$F1 3922
1 TraesCS2B01G266000 chr2D 302774435 302779684 5249 True 1126 3555 92.62975 87 3920 4 chr2D.!!$R1 3833
2 TraesCS2B01G266000 chr2A 380737131 380737854 723 True 869 869 88.39800 3199 3918 1 chr2A.!!$R1 719
3 TraesCS2B01G266000 chr2A 380744792 380747540 2748 True 859 2006 94.43440 86 3008 5 chr2A.!!$R2 2922

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
397 399 0.035056 CTCTGGTGGTTGGATGGGAC 60.035 60.0 0.00 0.0 0.00 4.46 F
406 408 0.036388 TTGGATGGGACGAGACTTGC 60.036 55.0 0.00 0.0 0.00 4.01 F
596 598 0.035056 TAAAGAGGGAGCAGGCAAGC 60.035 55.0 0.00 0.0 0.00 4.01 F
671 673 0.101219 TCGTCGCCATCAGATGACAG 59.899 55.0 12.41 3.0 0.00 3.51 F
2331 2428 0.247736 AGACCAGACACTTCGATGGC 59.752 55.0 3.12 0.0 36.21 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1575 1633 0.321564 TGATGAGGAAGCCGTTGGTG 60.322 55.000 0.00 0.00 0.00 4.17 R
2310 2407 1.134965 CCATCGAAGTGTCTGGTCTCC 60.135 57.143 0.00 0.00 0.00 3.71 R
2559 2656 1.227380 GATGTACAGAGCCAGCCCG 60.227 63.158 0.33 0.00 0.00 6.13 R
2790 2887 2.729862 ACGCAGACGAGCACGAAC 60.730 61.111 11.40 4.01 43.93 3.95 R
3352 3620 0.108377 TCACATTACGCGTCCTGCAT 60.108 50.000 18.63 0.00 46.97 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.535753 AAAAGTCCTCCCTGTTTGATTTG 57.464 39.130 0.00 0.00 0.00 2.32
29 30 2.519013 AGTCCTCCCTGTTTGATTTGC 58.481 47.619 0.00 0.00 0.00 3.68
30 31 2.108952 AGTCCTCCCTGTTTGATTTGCT 59.891 45.455 0.00 0.00 0.00 3.91
31 32 3.330701 AGTCCTCCCTGTTTGATTTGCTA 59.669 43.478 0.00 0.00 0.00 3.49
32 33 3.691609 GTCCTCCCTGTTTGATTTGCTAG 59.308 47.826 0.00 0.00 0.00 3.42
33 34 3.019564 CCTCCCTGTTTGATTTGCTAGG 58.980 50.000 0.00 0.00 0.00 3.02
34 35 3.019564 CTCCCTGTTTGATTTGCTAGGG 58.980 50.000 0.00 0.00 44.96 3.53
35 36 3.085952 CCCTGTTTGATTTGCTAGGGA 57.914 47.619 0.00 0.00 46.19 4.20
36 37 2.755103 CCCTGTTTGATTTGCTAGGGAC 59.245 50.000 0.00 0.00 46.19 4.46
37 38 3.562176 CCCTGTTTGATTTGCTAGGGACT 60.562 47.826 0.00 0.00 46.19 3.85
38 39 4.082125 CCTGTTTGATTTGCTAGGGACTT 58.918 43.478 0.00 0.00 41.75 3.01
39 40 4.524328 CCTGTTTGATTTGCTAGGGACTTT 59.476 41.667 0.00 0.00 41.75 2.66
40 41 5.011023 CCTGTTTGATTTGCTAGGGACTTTT 59.989 40.000 0.00 0.00 41.75 2.27
41 42 6.462909 CCTGTTTGATTTGCTAGGGACTTTTT 60.463 38.462 0.00 0.00 41.75 1.94
79 80 5.801531 AAAAATCCCTAGAACCAAACACC 57.198 39.130 0.00 0.00 0.00 4.16
80 81 3.451402 AATCCCTAGAACCAAACACCC 57.549 47.619 0.00 0.00 0.00 4.61
81 82 1.069775 TCCCTAGAACCAAACACCCC 58.930 55.000 0.00 0.00 0.00 4.95
82 83 0.039180 CCCTAGAACCAAACACCCCC 59.961 60.000 0.00 0.00 0.00 5.40
83 84 1.073098 CCTAGAACCAAACACCCCCT 58.927 55.000 0.00 0.00 0.00 4.79
84 85 2.271777 CCTAGAACCAAACACCCCCTA 58.728 52.381 0.00 0.00 0.00 3.53
85 86 2.645797 CCTAGAACCAAACACCCCCTAA 59.354 50.000 0.00 0.00 0.00 2.69
236 237 7.751047 TCTATTGTCATGCTACTAACGAAAC 57.249 36.000 0.00 0.00 0.00 2.78
241 242 5.347635 TGTCATGCTACTAACGAAACATCAC 59.652 40.000 0.00 0.00 0.00 3.06
250 251 6.100004 ACTAACGAAACATCACGATCAGAAT 58.900 36.000 0.00 0.00 0.00 2.40
251 252 5.456192 AACGAAACATCACGATCAGAATC 57.544 39.130 0.00 0.00 0.00 2.52
265 267 4.794278 TCAGAATCCGTGCAAACTAGTA 57.206 40.909 0.00 0.00 0.00 1.82
281 283 7.533426 CAAACTAGTAGAATTGCTTGATGCTT 58.467 34.615 3.59 0.00 43.37 3.91
284 286 7.533426 ACTAGTAGAATTGCTTGATGCTTTTG 58.467 34.615 3.59 0.00 43.37 2.44
314 316 4.032960 TGTGCTGAAATGGACAGGTAAT 57.967 40.909 0.00 0.00 33.47 1.89
319 321 4.508124 GCTGAAATGGACAGGTAATAGACG 59.492 45.833 0.00 0.00 36.09 4.18
381 383 1.754226 GAGGACGATGCCTTCTTCTCT 59.246 52.381 0.00 0.00 38.73 3.10
387 389 1.280421 GATGCCTTCTTCTCTGGTGGT 59.720 52.381 0.00 0.00 0.00 4.16
388 390 1.140312 TGCCTTCTTCTCTGGTGGTT 58.860 50.000 0.00 0.00 0.00 3.67
389 391 1.202806 TGCCTTCTTCTCTGGTGGTTG 60.203 52.381 0.00 0.00 0.00 3.77
390 392 1.884067 GCCTTCTTCTCTGGTGGTTGG 60.884 57.143 0.00 0.00 0.00 3.77
391 393 1.699634 CCTTCTTCTCTGGTGGTTGGA 59.300 52.381 0.00 0.00 0.00 3.53
392 394 2.307098 CCTTCTTCTCTGGTGGTTGGAT 59.693 50.000 0.00 0.00 0.00 3.41
393 395 3.341823 CTTCTTCTCTGGTGGTTGGATG 58.658 50.000 0.00 0.00 0.00 3.51
394 396 1.630369 TCTTCTCTGGTGGTTGGATGG 59.370 52.381 0.00 0.00 0.00 3.51
395 397 0.698238 TTCTCTGGTGGTTGGATGGG 59.302 55.000 0.00 0.00 0.00 4.00
396 398 0.178876 TCTCTGGTGGTTGGATGGGA 60.179 55.000 0.00 0.00 0.00 4.37
397 399 0.035056 CTCTGGTGGTTGGATGGGAC 60.035 60.000 0.00 0.00 0.00 4.46
398 400 1.377202 CTGGTGGTTGGATGGGACG 60.377 63.158 0.00 0.00 0.00 4.79
399 401 1.836999 CTGGTGGTTGGATGGGACGA 61.837 60.000 0.00 0.00 0.00 4.20
400 402 1.078426 GGTGGTTGGATGGGACGAG 60.078 63.158 0.00 0.00 0.00 4.18
401 403 1.550130 GGTGGTTGGATGGGACGAGA 61.550 60.000 0.00 0.00 0.00 4.04
402 404 0.391263 GTGGTTGGATGGGACGAGAC 60.391 60.000 0.00 0.00 0.00 3.36
403 405 0.544357 TGGTTGGATGGGACGAGACT 60.544 55.000 0.00 0.00 0.00 3.24
404 406 0.613777 GGTTGGATGGGACGAGACTT 59.386 55.000 0.00 0.00 0.00 3.01
405 407 1.676014 GGTTGGATGGGACGAGACTTG 60.676 57.143 0.00 0.00 0.00 3.16
406 408 0.036388 TTGGATGGGACGAGACTTGC 60.036 55.000 0.00 0.00 0.00 4.01
407 409 1.153349 GGATGGGACGAGACTTGCC 60.153 63.158 0.00 0.00 0.00 4.52
408 410 1.617947 GGATGGGACGAGACTTGCCT 61.618 60.000 0.00 0.00 0.00 4.75
409 411 0.460987 GATGGGACGAGACTTGCCTG 60.461 60.000 0.00 0.00 0.00 4.85
410 412 2.435059 GGGACGAGACTTGCCTGC 60.435 66.667 0.00 0.00 0.00 4.85
411 413 2.659610 GGACGAGACTTGCCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
412 414 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
413 415 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
414 416 1.882989 GACGAGACTTGCCTGCTCCT 61.883 60.000 0.00 0.00 0.00 3.69
415 417 1.153667 CGAGACTTGCCTGCTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
416 418 1.881903 CGAGACTTGCCTGCTCCTCA 61.882 60.000 0.00 0.00 0.00 3.86
417 419 0.390998 GAGACTTGCCTGCTCCTCAC 60.391 60.000 0.00 0.00 0.00 3.51
418 420 1.739562 GACTTGCCTGCTCCTCACG 60.740 63.158 0.00 0.00 0.00 4.35
419 421 2.345244 CTTGCCTGCTCCTCACGT 59.655 61.111 0.00 0.00 0.00 4.49
420 422 2.031012 TTGCCTGCTCCTCACGTG 59.969 61.111 9.94 9.94 0.00 4.49
421 423 2.721971 CTTGCCTGCTCCTCACGTGT 62.722 60.000 16.51 0.00 0.00 4.49
422 424 2.740055 GCCTGCTCCTCACGTGTG 60.740 66.667 16.51 13.39 0.00 3.82
423 425 2.737180 CCTGCTCCTCACGTGTGT 59.263 61.111 16.51 0.00 0.00 3.72
425 427 2.280119 TGCTCCTCACGTGTGTGC 60.280 61.111 16.51 18.82 46.01 4.57
426 428 2.029666 GCTCCTCACGTGTGTGCT 59.970 61.111 16.51 0.00 46.01 4.40
427 429 2.024319 GCTCCTCACGTGTGTGCTC 61.024 63.158 16.51 0.00 46.01 4.26
428 430 1.363807 CTCCTCACGTGTGTGCTCA 59.636 57.895 16.51 0.00 46.01 4.26
429 431 0.037882 CTCCTCACGTGTGTGCTCAT 60.038 55.000 16.51 0.00 46.01 2.90
430 432 1.202348 CTCCTCACGTGTGTGCTCATA 59.798 52.381 16.51 0.00 46.01 2.15
431 433 1.824852 TCCTCACGTGTGTGCTCATAT 59.175 47.619 16.51 0.00 46.01 1.78
432 434 1.929169 CCTCACGTGTGTGCTCATATG 59.071 52.381 16.51 0.00 46.01 1.78
433 435 2.610433 CTCACGTGTGTGCTCATATGT 58.390 47.619 16.51 4.73 46.01 2.29
434 436 2.336667 TCACGTGTGTGCTCATATGTG 58.663 47.619 23.87 23.87 46.64 3.21
435 437 1.078709 ACGTGTGTGCTCATATGTGC 58.921 50.000 20.26 20.26 34.49 4.57
436 438 1.338105 ACGTGTGTGCTCATATGTGCT 60.338 47.619 25.41 5.64 34.49 4.40
437 439 1.325640 CGTGTGTGCTCATATGTGCTC 59.674 52.381 25.41 22.46 35.73 4.26
438 440 1.667724 GTGTGTGCTCATATGTGCTCC 59.332 52.381 25.41 17.69 35.73 4.70
439 441 1.556451 TGTGTGCTCATATGTGCTCCT 59.444 47.619 25.41 0.00 35.73 3.69
440 442 1.938577 GTGTGCTCATATGTGCTCCTG 59.061 52.381 25.41 2.17 35.73 3.86
441 443 0.942962 GTGCTCATATGTGCTCCTGC 59.057 55.000 25.41 10.58 40.20 4.85
450 452 4.910956 TGCTCCTGCATACGTGAC 57.089 55.556 0.00 0.00 45.31 3.67
451 453 2.276869 TGCTCCTGCATACGTGACT 58.723 52.632 0.00 0.00 45.31 3.41
452 454 0.608130 TGCTCCTGCATACGTGACTT 59.392 50.000 0.00 0.00 45.31 3.01
453 455 1.002366 GCTCCTGCATACGTGACTTG 58.998 55.000 0.00 0.00 39.41 3.16
454 456 1.404181 GCTCCTGCATACGTGACTTGA 60.404 52.381 0.00 0.00 39.41 3.02
455 457 2.739932 GCTCCTGCATACGTGACTTGAT 60.740 50.000 0.00 0.00 39.41 2.57
456 458 3.525537 CTCCTGCATACGTGACTTGATT 58.474 45.455 0.00 0.00 0.00 2.57
457 459 3.935203 CTCCTGCATACGTGACTTGATTT 59.065 43.478 0.00 0.00 0.00 2.17
458 460 3.684305 TCCTGCATACGTGACTTGATTTG 59.316 43.478 0.00 0.00 0.00 2.32
459 461 3.684305 CCTGCATACGTGACTTGATTTGA 59.316 43.478 0.00 0.00 0.00 2.69
460 462 4.333649 CCTGCATACGTGACTTGATTTGAT 59.666 41.667 0.00 0.00 0.00 2.57
461 463 5.163723 CCTGCATACGTGACTTGATTTGATT 60.164 40.000 0.00 0.00 0.00 2.57
462 464 5.630061 TGCATACGTGACTTGATTTGATTG 58.370 37.500 0.00 0.00 0.00 2.67
463 465 5.411053 TGCATACGTGACTTGATTTGATTGA 59.589 36.000 0.00 0.00 0.00 2.57
464 466 6.072783 TGCATACGTGACTTGATTTGATTGAA 60.073 34.615 0.00 0.00 0.00 2.69
465 467 6.801377 GCATACGTGACTTGATTTGATTGAAA 59.199 34.615 0.00 0.00 0.00 2.69
466 468 7.201266 GCATACGTGACTTGATTTGATTGAAAC 60.201 37.037 0.00 0.00 0.00 2.78
467 469 6.130298 ACGTGACTTGATTTGATTGAAACA 57.870 33.333 0.00 0.00 0.00 2.83
468 470 6.559810 ACGTGACTTGATTTGATTGAAACAA 58.440 32.000 0.00 0.00 0.00 2.83
469 471 7.032580 ACGTGACTTGATTTGATTGAAACAAA 58.967 30.769 3.11 3.11 40.62 2.83
470 472 7.543868 ACGTGACTTGATTTGATTGAAACAAAA 59.456 29.630 4.74 0.00 39.95 2.44
471 473 8.542132 CGTGACTTGATTTGATTGAAACAAAAT 58.458 29.630 4.74 0.00 39.95 1.82
483 485 9.487790 TGATTGAAACAAAATAAAATCTGACCC 57.512 29.630 0.00 0.00 0.00 4.46
484 486 8.846943 ATTGAAACAAAATAAAATCTGACCCC 57.153 30.769 0.00 0.00 0.00 4.95
485 487 7.366847 TGAAACAAAATAAAATCTGACCCCA 57.633 32.000 0.00 0.00 0.00 4.96
486 488 7.213678 TGAAACAAAATAAAATCTGACCCCAC 58.786 34.615 0.00 0.00 0.00 4.61
487 489 5.738619 ACAAAATAAAATCTGACCCCACC 57.261 39.130 0.00 0.00 0.00 4.61
488 490 4.530553 ACAAAATAAAATCTGACCCCACCC 59.469 41.667 0.00 0.00 0.00 4.61
489 491 3.398318 AATAAAATCTGACCCCACCCC 57.602 47.619 0.00 0.00 0.00 4.95
490 492 1.004436 TAAAATCTGACCCCACCCCC 58.996 55.000 0.00 0.00 0.00 5.40
491 493 0.780090 AAAATCTGACCCCACCCCCT 60.780 55.000 0.00 0.00 0.00 4.79
492 494 0.780090 AAATCTGACCCCACCCCCTT 60.780 55.000 0.00 0.00 0.00 3.95
493 495 0.122435 AATCTGACCCCACCCCCTTA 59.878 55.000 0.00 0.00 0.00 2.69
494 496 0.122435 ATCTGACCCCACCCCCTTAA 59.878 55.000 0.00 0.00 0.00 1.85
495 497 0.103823 TCTGACCCCACCCCCTTAAA 60.104 55.000 0.00 0.00 0.00 1.52
496 498 0.781278 CTGACCCCACCCCCTTAAAA 59.219 55.000 0.00 0.00 0.00 1.52
497 499 1.361197 CTGACCCCACCCCCTTAAAAT 59.639 52.381 0.00 0.00 0.00 1.82
498 500 1.359818 TGACCCCACCCCCTTAAAATC 59.640 52.381 0.00 0.00 0.00 2.17
499 501 1.359818 GACCCCACCCCCTTAAAATCA 59.640 52.381 0.00 0.00 0.00 2.57
500 502 1.361197 ACCCCACCCCCTTAAAATCAG 59.639 52.381 0.00 0.00 0.00 2.90
501 503 1.643811 CCCCACCCCCTTAAAATCAGA 59.356 52.381 0.00 0.00 0.00 3.27
502 504 2.358195 CCCCACCCCCTTAAAATCAGAG 60.358 54.545 0.00 0.00 0.00 3.35
503 505 2.358195 CCCACCCCCTTAAAATCAGAGG 60.358 54.545 0.00 0.00 0.00 3.69
508 510 3.584733 CCCTTAAAATCAGAGGGGGAG 57.415 52.381 0.00 0.00 45.27 4.30
509 511 3.123273 CCCTTAAAATCAGAGGGGGAGA 58.877 50.000 0.00 0.00 45.27 3.71
510 512 3.724209 CCCTTAAAATCAGAGGGGGAGAT 59.276 47.826 0.00 0.00 45.27 2.75
511 513 4.913968 CCCTTAAAATCAGAGGGGGAGATA 59.086 45.833 0.00 0.00 45.27 1.98
512 514 5.372661 CCCTTAAAATCAGAGGGGGAGATAA 59.627 44.000 0.00 0.00 45.27 1.75
513 515 6.046049 CCCTTAAAATCAGAGGGGGAGATAAT 59.954 42.308 0.00 0.00 45.27 1.28
514 516 7.423037 CCCTTAAAATCAGAGGGGGAGATAATT 60.423 40.741 0.00 0.00 45.27 1.40
515 517 8.669571 CCTTAAAATCAGAGGGGGAGATAATTA 58.330 37.037 0.00 0.00 0.00 1.40
516 518 9.732130 CTTAAAATCAGAGGGGGAGATAATTAG 57.268 37.037 0.00 0.00 0.00 1.73
517 519 7.954539 AAAATCAGAGGGGGAGATAATTAGA 57.045 36.000 0.00 0.00 0.00 2.10
518 520 8.531362 AAAATCAGAGGGGGAGATAATTAGAT 57.469 34.615 0.00 0.00 0.00 1.98
519 521 8.531362 AAATCAGAGGGGGAGATAATTAGATT 57.469 34.615 0.00 0.00 0.00 2.40
520 522 9.635284 AAATCAGAGGGGGAGATAATTAGATTA 57.365 33.333 0.00 0.00 0.00 1.75
521 523 8.852671 ATCAGAGGGGGAGATAATTAGATTAG 57.147 38.462 0.00 0.00 0.00 1.73
522 524 8.012663 TCAGAGGGGGAGATAATTAGATTAGA 57.987 38.462 0.00 0.00 0.00 2.10
523 525 8.465146 TCAGAGGGGGAGATAATTAGATTAGAA 58.535 37.037 0.00 0.00 0.00 2.10
524 526 9.105844 CAGAGGGGGAGATAATTAGATTAGAAA 57.894 37.037 0.00 0.00 0.00 2.52
525 527 9.332713 AGAGGGGGAGATAATTAGATTAGAAAG 57.667 37.037 0.00 0.00 0.00 2.62
526 528 9.327731 GAGGGGGAGATAATTAGATTAGAAAGA 57.672 37.037 0.00 0.00 0.00 2.52
527 529 9.332713 AGGGGGAGATAATTAGATTAGAAAGAG 57.667 37.037 0.00 0.00 0.00 2.85
528 530 9.327731 GGGGGAGATAATTAGATTAGAAAGAGA 57.672 37.037 0.00 0.00 0.00 3.10
570 572 7.913423 CGTAGGATAAAATGATAGCATGGATG 58.087 38.462 0.00 0.00 34.26 3.51
571 573 7.765819 CGTAGGATAAAATGATAGCATGGATGA 59.234 37.037 0.00 0.00 34.26 2.92
572 574 9.453572 GTAGGATAAAATGATAGCATGGATGAA 57.546 33.333 0.00 0.00 34.26 2.57
573 575 8.945195 AGGATAAAATGATAGCATGGATGAAA 57.055 30.769 0.00 0.00 34.26 2.69
574 576 9.021807 AGGATAAAATGATAGCATGGATGAAAG 57.978 33.333 0.00 0.00 34.26 2.62
575 577 7.758528 GGATAAAATGATAGCATGGATGAAAGC 59.241 37.037 0.00 0.00 34.26 3.51
576 578 6.474140 AAAATGATAGCATGGATGAAAGCA 57.526 33.333 0.00 0.00 34.26 3.91
577 579 6.665992 AAATGATAGCATGGATGAAAGCAT 57.334 33.333 0.00 0.00 34.19 3.79
578 580 7.770366 AAATGATAGCATGGATGAAAGCATA 57.230 32.000 0.00 0.00 32.59 3.14
579 581 7.770366 AATGATAGCATGGATGAAAGCATAA 57.230 32.000 0.00 0.00 32.59 1.90
580 582 7.770366 ATGATAGCATGGATGAAAGCATAAA 57.230 32.000 0.00 0.00 31.57 1.40
581 583 7.210718 TGATAGCATGGATGAAAGCATAAAG 57.789 36.000 0.00 0.00 34.11 1.85
582 584 6.999871 TGATAGCATGGATGAAAGCATAAAGA 59.000 34.615 0.00 0.00 34.11 2.52
583 585 5.769484 AGCATGGATGAAAGCATAAAGAG 57.231 39.130 0.00 0.00 34.11 2.85
584 586 4.583489 AGCATGGATGAAAGCATAAAGAGG 59.417 41.667 0.00 0.00 34.11 3.69
585 587 4.261909 GCATGGATGAAAGCATAAAGAGGG 60.262 45.833 0.00 0.00 34.11 4.30
586 588 4.860802 TGGATGAAAGCATAAAGAGGGA 57.139 40.909 0.00 0.00 34.11 4.20
587 589 4.785301 TGGATGAAAGCATAAAGAGGGAG 58.215 43.478 0.00 0.00 34.11 4.30
588 590 3.567585 GGATGAAAGCATAAAGAGGGAGC 59.432 47.826 0.00 0.00 34.11 4.70
589 591 3.719268 TGAAAGCATAAAGAGGGAGCA 57.281 42.857 0.00 0.00 0.00 4.26
590 592 3.614092 TGAAAGCATAAAGAGGGAGCAG 58.386 45.455 0.00 0.00 0.00 4.24
591 593 2.725221 AAGCATAAAGAGGGAGCAGG 57.275 50.000 0.00 0.00 0.00 4.85
592 594 0.182299 AGCATAAAGAGGGAGCAGGC 59.818 55.000 0.00 0.00 0.00 4.85
593 595 0.107017 GCATAAAGAGGGAGCAGGCA 60.107 55.000 0.00 0.00 0.00 4.75
594 596 1.683011 GCATAAAGAGGGAGCAGGCAA 60.683 52.381 0.00 0.00 0.00 4.52
595 597 2.295885 CATAAAGAGGGAGCAGGCAAG 58.704 52.381 0.00 0.00 0.00 4.01
596 598 0.035056 TAAAGAGGGAGCAGGCAAGC 60.035 55.000 0.00 0.00 0.00 4.01
597 599 2.072874 AAAGAGGGAGCAGGCAAGCA 62.073 55.000 4.78 0.00 36.85 3.91
598 600 2.438075 GAGGGAGCAGGCAAGCAG 60.438 66.667 4.78 0.00 36.85 4.24
599 601 3.991725 GAGGGAGCAGGCAAGCAGG 62.992 68.421 4.78 0.00 36.85 4.85
600 602 4.039092 GGGAGCAGGCAAGCAGGA 62.039 66.667 4.78 0.00 36.85 3.86
601 603 2.274760 GGAGCAGGCAAGCAGGAT 59.725 61.111 4.78 0.00 36.85 3.24
602 604 1.823041 GGAGCAGGCAAGCAGGATC 60.823 63.158 4.78 0.00 36.85 3.36
603 605 1.823041 GAGCAGGCAAGCAGGATCC 60.823 63.158 2.48 2.48 36.85 3.36
604 606 2.268167 GAGCAGGCAAGCAGGATCCT 62.268 60.000 9.02 9.02 36.85 3.24
605 607 1.823041 GCAGGCAAGCAGGATCCTC 60.823 63.158 12.69 7.20 0.00 3.71
626 628 3.945921 TCTTGGATGTACCGACTGACTAG 59.054 47.826 0.00 0.00 42.61 2.57
629 631 2.223525 GGATGTACCGACTGACTAGTGC 60.224 54.545 0.00 0.00 37.25 4.40
671 673 0.101219 TCGTCGCCATCAGATGACAG 59.899 55.000 12.41 3.00 0.00 3.51
732 734 0.934496 TCAGTCAAAGTGAAACGGCG 59.066 50.000 4.80 4.80 45.86 6.46
734 736 1.721133 GTCAAAGTGAAACGGCGCG 60.721 57.895 6.90 0.00 45.86 6.86
735 737 1.883544 TCAAAGTGAAACGGCGCGA 60.884 52.632 12.10 0.00 45.86 5.87
736 738 1.721133 CAAAGTGAAACGGCGCGAC 60.721 57.895 12.10 5.80 45.86 5.19
737 739 2.174969 AAAGTGAAACGGCGCGACA 61.175 52.632 14.85 0.93 45.86 4.35
738 740 1.707239 AAAGTGAAACGGCGCGACAA 61.707 50.000 14.85 0.00 45.86 3.18
739 741 2.101209 AAGTGAAACGGCGCGACAAG 62.101 55.000 14.85 0.00 45.86 3.16
740 742 2.279584 TGAAACGGCGCGACAAGA 60.280 55.556 14.85 0.00 0.00 3.02
741 743 2.170273 GAAACGGCGCGACAAGAC 59.830 61.111 14.85 0.00 0.00 3.01
742 744 2.586635 AAACGGCGCGACAAGACA 60.587 55.556 14.85 0.00 0.00 3.41
743 745 2.743871 GAAACGGCGCGACAAGACAC 62.744 60.000 14.85 0.00 0.00 3.67
744 746 4.578898 ACGGCGCGACAAGACACA 62.579 61.111 14.85 0.00 0.00 3.72
745 747 3.112075 CGGCGCGACAAGACACAT 61.112 61.111 14.85 0.00 0.00 3.21
746 748 2.476051 GGCGCGACAAGACACATG 59.524 61.111 12.10 0.00 0.00 3.21
747 749 2.317609 GGCGCGACAAGACACATGT 61.318 57.895 12.10 0.00 0.00 3.21
748 750 1.130613 GCGCGACAAGACACATGTC 59.869 57.895 12.10 3.72 45.08 3.06
749 751 1.556591 GCGCGACAAGACACATGTCA 61.557 55.000 12.10 0.00 45.90 3.58
750 752 0.858583 CGCGACAAGACACATGTCAA 59.141 50.000 14.23 0.00 45.90 3.18
751 753 1.136529 CGCGACAAGACACATGTCAAG 60.137 52.381 14.23 8.20 45.90 3.02
752 754 1.867233 GCGACAAGACACATGTCAAGT 59.133 47.619 14.23 11.12 45.90 3.16
753 755 2.287915 GCGACAAGACACATGTCAAGTT 59.712 45.455 14.23 0.00 45.90 2.66
754 756 3.846023 GCGACAAGACACATGTCAAGTTG 60.846 47.826 14.23 14.59 45.90 3.16
755 757 3.555547 CGACAAGACACATGTCAAGTTGA 59.444 43.478 14.23 0.08 45.90 3.18
756 758 4.033932 CGACAAGACACATGTCAAGTTGAA 59.966 41.667 14.23 0.00 45.90 2.69
757 759 5.277490 CGACAAGACACATGTCAAGTTGAAT 60.277 40.000 14.23 1.19 45.90 2.57
758 760 7.048599 CGACAAGACACATGTCAAGTTGAATC 61.049 42.308 14.23 0.00 45.90 2.52
759 761 9.817903 CGACAAGACACATGTCAAGTTGAATCC 62.818 44.444 14.23 0.00 45.90 3.01
760 762 4.425577 GACACATGTCAAGTTGAATCCC 57.574 45.455 7.25 0.00 44.18 3.85
761 763 3.157087 ACACATGTCAAGTTGAATCCCC 58.843 45.455 7.25 0.00 0.00 4.81
762 764 2.493278 CACATGTCAAGTTGAATCCCCC 59.507 50.000 7.25 0.00 0.00 5.40
763 765 2.379907 ACATGTCAAGTTGAATCCCCCT 59.620 45.455 7.25 0.00 0.00 4.79
764 766 3.591527 ACATGTCAAGTTGAATCCCCCTA 59.408 43.478 7.25 0.00 0.00 3.53
765 767 3.713826 TGTCAAGTTGAATCCCCCTAC 57.286 47.619 7.25 0.00 0.00 3.18
766 768 3.256704 TGTCAAGTTGAATCCCCCTACT 58.743 45.455 7.25 0.00 0.00 2.57
767 769 4.431378 TGTCAAGTTGAATCCCCCTACTA 58.569 43.478 7.25 0.00 0.00 1.82
828 830 3.422303 CCACACGCGTGACATGGG 61.422 66.667 42.94 28.57 46.80 4.00
862 865 0.461163 ATGTTGTATGCGTGCGCCTA 60.461 50.000 14.16 5.81 41.09 3.93
864 867 1.082117 GTTGTATGCGTGCGCCTAGT 61.082 55.000 14.16 0.71 41.09 2.57
865 868 0.456628 TTGTATGCGTGCGCCTAGTA 59.543 50.000 14.16 0.00 41.09 1.82
867 870 0.663568 GTATGCGTGCGCCTAGTAGG 60.664 60.000 12.27 12.27 41.09 3.18
869 872 2.026301 GCGTGCGCCTAGTAGGAG 59.974 66.667 21.02 17.95 37.67 3.69
870 873 2.772691 GCGTGCGCCTAGTAGGAGT 61.773 63.158 21.02 0.00 37.67 3.85
871 874 1.442526 GCGTGCGCCTAGTAGGAGTA 61.443 60.000 21.02 13.68 37.67 2.59
872 875 0.307146 CGTGCGCCTAGTAGGAGTAC 59.693 60.000 24.73 24.73 44.66 2.73
873 876 1.386533 GTGCGCCTAGTAGGAGTACA 58.613 55.000 27.96 14.17 46.62 2.90
934 977 3.385111 GTCTTCCTCATCCATCCGTAAGT 59.615 47.826 0.00 0.00 0.00 2.24
1215 1261 6.071391 ACACATGGCTTCAGGTAATTAAAAGG 60.071 38.462 0.00 0.00 33.27 3.11
1244 1290 0.320421 TCTTCTCCTTGGCCGAAACG 60.320 55.000 0.00 0.00 0.00 3.60
1632 1690 2.429610 GTCCTACCTTATCAACCTCGCA 59.570 50.000 0.00 0.00 0.00 5.10
1764 1822 7.806409 TTACAGAAAGGTTAGTTTTGGGTAC 57.194 36.000 0.00 0.00 0.00 3.34
1767 1825 6.994496 ACAGAAAGGTTAGTTTTGGGTACTAC 59.006 38.462 0.00 0.00 0.00 2.73
1768 1826 6.429078 CAGAAAGGTTAGTTTTGGGTACTACC 59.571 42.308 0.00 0.00 37.60 3.18
1813 1910 5.333046 TCAATTCTTTACGTGAACGAACC 57.667 39.130 10.26 0.00 43.02 3.62
1857 1954 1.201429 GGAGGGTGGAGGAAGCAGAA 61.201 60.000 0.00 0.00 0.00 3.02
1880 1977 3.852536 GCGATCCTGCGTAAGATATACAC 59.147 47.826 0.00 0.00 43.02 2.90
1890 1987 1.535833 AGATATACACGGCCGAGGAG 58.464 55.000 35.90 20.23 0.00 3.69
1934 2031 0.471211 TTGAAGGAGTCGGTGGAGGT 60.471 55.000 0.00 0.00 0.00 3.85
2085 2182 1.749634 GTGATGTACTACAGCCCGAGT 59.250 52.381 2.04 0.00 32.69 4.18
2190 2287 6.161855 TCCATCGTTAGCATCTACTTCATT 57.838 37.500 0.00 0.00 0.00 2.57
2331 2428 0.247736 AGACCAGACACTTCGATGGC 59.752 55.000 3.12 0.00 36.21 4.40
2334 2431 0.803768 CCAGACACTTCGATGGCTCG 60.804 60.000 3.12 0.77 46.41 5.03
2559 2656 3.134127 GGTTGGCTGGCGATGGTC 61.134 66.667 0.00 0.00 0.00 4.02
2595 2692 3.771160 GCCTTCTTCTCGCCGGGA 61.771 66.667 2.18 0.00 0.00 5.14
2858 2955 1.767681 GGTGGAGAAGATGCTGGAGAT 59.232 52.381 0.00 0.00 0.00 2.75
2931 3028 0.832135 ACGGGGTGTGAGTGTCATCT 60.832 55.000 0.00 0.00 0.00 2.90
2996 3093 2.349275 TCCGCGTAATTGGAATTTCGAC 59.651 45.455 4.92 5.76 40.24 4.20
3002 3099 6.308675 GCGTAATTGGAATTTCGACTTGTAA 58.691 36.000 13.33 0.00 40.24 2.41
3012 3109 7.061094 GGAATTTCGACTTGTAAGCTTTCAATG 59.939 37.037 17.48 13.78 0.00 2.82
3013 3110 6.612247 TTTCGACTTGTAAGCTTTCAATGA 57.388 33.333 17.48 13.06 0.00 2.57
3065 3165 9.561069 AGGCTTTCAATAATATTTATCGTGACT 57.439 29.630 0.00 0.00 0.00 3.41
3081 3181 4.096311 CGTGACTAGTCTTTATCCGTGTG 58.904 47.826 23.01 0.00 0.00 3.82
3096 3196 1.378646 TGTGTTGCAACGGGGACAA 60.379 52.632 23.79 2.11 0.00 3.18
3099 3199 0.895530 TGTTGCAACGGGGACAAAAA 59.104 45.000 23.79 0.00 0.00 1.94
3117 3325 7.379529 GGACAAAAATAATCAGTTGCATATCCG 59.620 37.037 0.00 0.00 0.00 4.18
3119 3327 5.964958 AAATAATCAGTTGCATATCCGGG 57.035 39.130 0.00 0.00 0.00 5.73
3129 3337 1.339055 GCATATCCGGGCTAATGCAGA 60.339 52.381 19.52 0.00 43.30 4.26
3133 3341 1.221840 CCGGGCTAATGCAGACTGT 59.778 57.895 3.99 0.00 36.86 3.55
3174 3384 3.855858 ACGCCAAAATTGTGTGTCTTTT 58.144 36.364 0.00 0.00 0.00 2.27
3175 3385 3.616379 ACGCCAAAATTGTGTGTCTTTTG 59.384 39.130 0.00 0.00 38.81 2.44
3181 3394 7.060518 GCCAAAATTGTGTGTCTTTTGAAAAAC 59.939 33.333 8.19 0.00 40.58 2.43
3184 3397 9.662545 AAAATTGTGTGTCTTTTGAAAAACAAG 57.337 25.926 9.72 0.00 39.77 3.16
3189 3402 8.353684 TGTGTGTCTTTTGAAAAACAAGAGTTA 58.646 29.630 7.06 0.00 40.28 2.24
3208 3444 7.162082 AGAGTTAGAAAACCAGTGATACAAGG 58.838 38.462 0.00 0.00 36.15 3.61
3228 3464 0.525761 GCAATGGCATTACACGGTGT 59.474 50.000 18.89 18.89 40.72 4.16
3256 3493 0.178964 ACAAGGTGGGTGGGATGTTG 60.179 55.000 0.00 0.00 0.00 3.33
3265 3502 1.680487 TGGGATGTTGTACCCCACG 59.320 57.895 2.92 0.00 44.67 4.94
3271 3508 1.416243 TGTTGTACCCCACGAAGACT 58.584 50.000 0.00 0.00 0.00 3.24
3277 3514 2.249309 ACCCCACGAAGACTAAGGAT 57.751 50.000 0.00 0.00 0.00 3.24
3286 3523 4.033817 ACGAAGACTAAGGATTACGTCTCG 59.966 45.833 0.00 0.00 37.76 4.04
3287 3524 4.033817 CGAAGACTAAGGATTACGTCTCGT 59.966 45.833 0.00 0.00 44.35 4.18
3329 3597 2.194056 CATCTGCCCTCGCCCATT 59.806 61.111 0.00 0.00 0.00 3.16
3352 3620 1.879380 CGTGCTTGGTCTTGGATTTCA 59.121 47.619 0.00 0.00 0.00 2.69
3365 3633 1.286501 GATTTCATGCAGGACGCGTA 58.713 50.000 13.97 0.00 46.97 4.42
3406 3674 4.201940 CCATGAAAGATGCAAGCATTACGA 60.202 41.667 9.16 0.00 36.70 3.43
3424 3692 2.092968 ACGATGACACCATAAGCACCAT 60.093 45.455 0.00 0.00 32.09 3.55
3487 3757 1.384191 GGGGGCTTGATGTGAGGTT 59.616 57.895 0.00 0.00 0.00 3.50
3501 3771 0.251341 GAGGTTGCCATCCACCACTT 60.251 55.000 0.00 0.00 0.00 3.16
3555 3825 2.112297 GGAACGACACCAGGCCAA 59.888 61.111 5.01 0.00 0.00 4.52
3562 3832 0.537143 GACACCAGGCCAACACATCA 60.537 55.000 5.01 0.00 0.00 3.07
3563 3833 0.823356 ACACCAGGCCAACACATCAC 60.823 55.000 5.01 0.00 0.00 3.06
3575 3845 1.238439 CACATCACGCCAAACCTTCT 58.762 50.000 0.00 0.00 0.00 2.85
3578 3848 1.069022 CATCACGCCAAACCTTCTGTG 60.069 52.381 0.00 0.00 0.00 3.66
3598 3868 3.612247 GAAGGGGCAGCTTGCGAGA 62.612 63.158 4.70 0.00 46.21 4.04
3614 3884 1.594862 CGAGAAGATGGTGCGGATTTC 59.405 52.381 0.00 0.00 0.00 2.17
3626 3896 2.781911 GGATTTCCGGGCTCTTGAC 58.218 57.895 0.00 0.00 0.00 3.18
3627 3897 0.253327 GGATTTCCGGGCTCTTGACT 59.747 55.000 0.00 0.00 0.00 3.41
3632 3902 1.600636 CCGGGCTCTTGACTGCAAA 60.601 57.895 0.00 0.00 32.73 3.68
3660 4179 2.663196 GGCGTTGTGAGGTAGGCT 59.337 61.111 0.00 0.00 0.00 4.58
3767 5507 1.450312 GCATCAGTTCGGGTCCTGG 60.450 63.158 0.00 0.00 0.00 4.45
3850 5590 2.202919 CCATCGCAGCATGTCCGA 60.203 61.111 6.88 6.88 39.31 4.55
3908 5648 4.213270 CACATGTCAACGTATTGAACCACT 59.787 41.667 0.00 0.00 46.40 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.684813 GCAAATCAAACAGGGAGGACTTTTT 60.685 40.000 0.00 0.00 0.00 1.94
6 7 4.202253 GCAAATCAAACAGGGAGGACTTTT 60.202 41.667 0.00 0.00 0.00 2.27
7 8 3.321968 GCAAATCAAACAGGGAGGACTTT 59.678 43.478 0.00 0.00 0.00 2.66
8 9 2.893489 GCAAATCAAACAGGGAGGACTT 59.107 45.455 0.00 0.00 0.00 3.01
9 10 2.108952 AGCAAATCAAACAGGGAGGACT 59.891 45.455 0.00 0.00 0.00 3.85
10 11 2.519013 AGCAAATCAAACAGGGAGGAC 58.481 47.619 0.00 0.00 0.00 3.85
11 12 2.978156 AGCAAATCAAACAGGGAGGA 57.022 45.000 0.00 0.00 0.00 3.71
12 13 3.019564 CCTAGCAAATCAAACAGGGAGG 58.980 50.000 0.00 0.00 0.00 4.30
13 14 3.019564 CCCTAGCAAATCAAACAGGGAG 58.980 50.000 0.00 0.00 44.71 4.30
14 15 3.085952 CCCTAGCAAATCAAACAGGGA 57.914 47.619 0.00 0.00 44.71 4.20
15 16 2.755103 GTCCCTAGCAAATCAAACAGGG 59.245 50.000 0.00 0.00 43.52 4.45
16 17 3.690460 AGTCCCTAGCAAATCAAACAGG 58.310 45.455 0.00 0.00 0.00 4.00
17 18 5.712152 AAAGTCCCTAGCAAATCAAACAG 57.288 39.130 0.00 0.00 0.00 3.16
18 19 6.478512 AAAAAGTCCCTAGCAAATCAAACA 57.521 33.333 0.00 0.00 0.00 2.83
57 58 4.591498 GGGTGTTTGGTTCTAGGGATTTTT 59.409 41.667 0.00 0.00 0.00 1.94
58 59 4.157246 GGGTGTTTGGTTCTAGGGATTTT 58.843 43.478 0.00 0.00 0.00 1.82
59 60 3.501568 GGGGTGTTTGGTTCTAGGGATTT 60.502 47.826 0.00 0.00 0.00 2.17
60 61 2.042569 GGGGTGTTTGGTTCTAGGGATT 59.957 50.000 0.00 0.00 0.00 3.01
61 62 1.639108 GGGGTGTTTGGTTCTAGGGAT 59.361 52.381 0.00 0.00 0.00 3.85
62 63 1.069775 GGGGTGTTTGGTTCTAGGGA 58.930 55.000 0.00 0.00 0.00 4.20
63 64 0.039180 GGGGGTGTTTGGTTCTAGGG 59.961 60.000 0.00 0.00 0.00 3.53
64 65 1.073098 AGGGGGTGTTTGGTTCTAGG 58.927 55.000 0.00 0.00 0.00 3.02
65 66 4.376225 TTTAGGGGGTGTTTGGTTCTAG 57.624 45.455 0.00 0.00 0.00 2.43
66 67 4.810584 TTTTAGGGGGTGTTTGGTTCTA 57.189 40.909 0.00 0.00 0.00 2.10
67 68 3.691698 TTTTAGGGGGTGTTTGGTTCT 57.308 42.857 0.00 0.00 0.00 3.01
236 237 1.524355 GCACGGATTCTGATCGTGATG 59.476 52.381 23.05 6.60 38.19 3.07
241 242 2.002586 AGTTTGCACGGATTCTGATCG 58.997 47.619 0.00 0.00 32.84 3.69
250 251 3.682858 GCAATTCTACTAGTTTGCACGGA 59.317 43.478 20.13 0.00 43.00 4.69
251 252 3.684788 AGCAATTCTACTAGTTTGCACGG 59.315 43.478 24.60 3.94 45.26 4.94
314 316 0.535335 GCTGGTGGAATGACCGTCTA 59.465 55.000 0.00 0.00 42.61 2.59
319 321 0.539438 TTGGTGCTGGTGGAATGACC 60.539 55.000 0.00 0.00 39.54 4.02
381 383 1.836999 CTCGTCCCATCCAACCACCA 61.837 60.000 0.00 0.00 0.00 4.17
387 389 0.036388 GCAAGTCTCGTCCCATCCAA 60.036 55.000 0.00 0.00 0.00 3.53
388 390 1.596934 GCAAGTCTCGTCCCATCCA 59.403 57.895 0.00 0.00 0.00 3.41
389 391 1.153349 GGCAAGTCTCGTCCCATCC 60.153 63.158 0.00 0.00 0.00 3.51
390 392 0.460987 CAGGCAAGTCTCGTCCCATC 60.461 60.000 0.00 0.00 0.00 3.51
391 393 1.599047 CAGGCAAGTCTCGTCCCAT 59.401 57.895 0.00 0.00 0.00 4.00
392 394 3.059982 CAGGCAAGTCTCGTCCCA 58.940 61.111 0.00 0.00 0.00 4.37
393 395 2.435059 GCAGGCAAGTCTCGTCCC 60.435 66.667 0.00 0.00 0.00 4.46
394 396 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
395 397 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
396 398 1.882989 GAGGAGCAGGCAAGTCTCGT 61.883 60.000 0.00 0.00 0.00 4.18
397 399 1.153667 GAGGAGCAGGCAAGTCTCG 60.154 63.158 0.00 0.00 0.00 4.04
398 400 0.390998 GTGAGGAGCAGGCAAGTCTC 60.391 60.000 0.00 0.00 0.00 3.36
399 401 1.676384 GTGAGGAGCAGGCAAGTCT 59.324 57.895 0.00 0.00 0.00 3.24
400 402 1.739562 CGTGAGGAGCAGGCAAGTC 60.740 63.158 0.00 0.00 0.00 3.01
401 403 2.345244 CGTGAGGAGCAGGCAAGT 59.655 61.111 0.00 0.00 0.00 3.16
402 404 2.031516 CACGTGAGGAGCAGGCAAG 61.032 63.158 10.90 0.00 35.84 4.01
403 405 2.031012 CACGTGAGGAGCAGGCAA 59.969 61.111 10.90 0.00 35.84 4.52
404 406 3.233980 ACACGTGAGGAGCAGGCA 61.234 61.111 25.01 0.00 35.84 4.75
405 407 2.740055 CACACGTGAGGAGCAGGC 60.740 66.667 25.01 0.00 35.84 4.85
406 408 1.665916 CACACACGTGAGGAGCAGG 60.666 63.158 25.01 3.39 46.80 4.85
407 409 2.313172 GCACACACGTGAGGAGCAG 61.313 63.158 25.01 5.61 46.80 4.24
408 410 2.280119 GCACACACGTGAGGAGCA 60.280 61.111 25.01 0.00 46.80 4.26
409 411 2.024319 GAGCACACACGTGAGGAGC 61.024 63.158 25.01 21.58 46.80 4.70
410 412 0.037882 ATGAGCACACACGTGAGGAG 60.038 55.000 25.01 12.68 46.80 3.69
411 413 1.253100 TATGAGCACACACGTGAGGA 58.747 50.000 25.01 0.00 46.80 3.71
412 414 1.929169 CATATGAGCACACACGTGAGG 59.071 52.381 25.01 16.14 46.80 3.86
413 415 2.346545 CACATATGAGCACACACGTGAG 59.653 50.000 25.01 18.00 46.80 3.51
414 416 2.336667 CACATATGAGCACACACGTGA 58.663 47.619 25.01 0.00 46.80 4.35
415 417 1.201954 GCACATATGAGCACACACGTG 60.202 52.381 18.76 15.48 46.56 4.49
416 418 1.078709 GCACATATGAGCACACACGT 58.921 50.000 18.76 0.00 0.00 4.49
417 419 1.325640 GAGCACATATGAGCACACACG 59.674 52.381 24.23 0.00 34.00 4.49
418 420 1.667724 GGAGCACATATGAGCACACAC 59.332 52.381 24.23 11.17 34.00 3.82
419 421 1.556451 AGGAGCACATATGAGCACACA 59.444 47.619 24.23 0.00 34.00 3.72
420 422 1.938577 CAGGAGCACATATGAGCACAC 59.061 52.381 24.23 14.46 34.00 3.82
421 423 1.744798 GCAGGAGCACATATGAGCACA 60.745 52.381 24.23 0.00 41.58 4.57
422 424 0.942962 GCAGGAGCACATATGAGCAC 59.057 55.000 24.23 18.53 41.58 4.40
423 425 3.391736 GCAGGAGCACATATGAGCA 57.608 52.632 24.23 0.00 41.58 4.26
434 436 1.002366 CAAGTCACGTATGCAGGAGC 58.998 55.000 0.00 0.00 42.57 4.70
435 437 2.654749 TCAAGTCACGTATGCAGGAG 57.345 50.000 0.00 0.00 0.00 3.69
436 438 3.610040 AATCAAGTCACGTATGCAGGA 57.390 42.857 0.00 0.00 0.00 3.86
437 439 3.684305 TCAAATCAAGTCACGTATGCAGG 59.316 43.478 0.00 0.00 0.00 4.85
438 440 4.926860 TCAAATCAAGTCACGTATGCAG 57.073 40.909 0.00 0.00 0.00 4.41
439 441 5.411053 TCAATCAAATCAAGTCACGTATGCA 59.589 36.000 0.00 0.00 0.00 3.96
440 442 5.868257 TCAATCAAATCAAGTCACGTATGC 58.132 37.500 0.00 0.00 0.00 3.14
441 443 7.802720 TGTTTCAATCAAATCAAGTCACGTATG 59.197 33.333 0.00 0.00 0.00 2.39
442 444 7.870826 TGTTTCAATCAAATCAAGTCACGTAT 58.129 30.769 0.00 0.00 0.00 3.06
443 445 7.252965 TGTTTCAATCAAATCAAGTCACGTA 57.747 32.000 0.00 0.00 0.00 3.57
444 446 6.130298 TGTTTCAATCAAATCAAGTCACGT 57.870 33.333 0.00 0.00 0.00 4.49
445 447 7.448588 TTTGTTTCAATCAAATCAAGTCACG 57.551 32.000 0.00 0.00 31.17 4.35
457 459 9.487790 GGGTCAGATTTTATTTTGTTTCAATCA 57.512 29.630 0.00 0.00 0.00 2.57
458 460 8.935844 GGGGTCAGATTTTATTTTGTTTCAATC 58.064 33.333 0.00 0.00 0.00 2.67
459 461 8.435982 TGGGGTCAGATTTTATTTTGTTTCAAT 58.564 29.630 0.00 0.00 0.00 2.57
460 462 7.713073 GTGGGGTCAGATTTTATTTTGTTTCAA 59.287 33.333 0.00 0.00 0.00 2.69
461 463 7.213678 GTGGGGTCAGATTTTATTTTGTTTCA 58.786 34.615 0.00 0.00 0.00 2.69
462 464 6.649141 GGTGGGGTCAGATTTTATTTTGTTTC 59.351 38.462 0.00 0.00 0.00 2.78
463 465 6.465178 GGGTGGGGTCAGATTTTATTTTGTTT 60.465 38.462 0.00 0.00 0.00 2.83
464 466 5.012664 GGGTGGGGTCAGATTTTATTTTGTT 59.987 40.000 0.00 0.00 0.00 2.83
465 467 4.530553 GGGTGGGGTCAGATTTTATTTTGT 59.469 41.667 0.00 0.00 0.00 2.83
466 468 4.081142 GGGGTGGGGTCAGATTTTATTTTG 60.081 45.833 0.00 0.00 0.00 2.44
467 469 4.101114 GGGGTGGGGTCAGATTTTATTTT 58.899 43.478 0.00 0.00 0.00 1.82
468 470 3.567886 GGGGGTGGGGTCAGATTTTATTT 60.568 47.826 0.00 0.00 0.00 1.40
469 471 2.023404 GGGGGTGGGGTCAGATTTTATT 60.023 50.000 0.00 0.00 0.00 1.40
470 472 1.573857 GGGGGTGGGGTCAGATTTTAT 59.426 52.381 0.00 0.00 0.00 1.40
471 473 1.004436 GGGGGTGGGGTCAGATTTTA 58.996 55.000 0.00 0.00 0.00 1.52
472 474 0.780090 AGGGGGTGGGGTCAGATTTT 60.780 55.000 0.00 0.00 0.00 1.82
473 475 0.780090 AAGGGGGTGGGGTCAGATTT 60.780 55.000 0.00 0.00 0.00 2.17
474 476 0.122435 TAAGGGGGTGGGGTCAGATT 59.878 55.000 0.00 0.00 0.00 2.40
475 477 0.122435 TTAAGGGGGTGGGGTCAGAT 59.878 55.000 0.00 0.00 0.00 2.90
476 478 0.103823 TTTAAGGGGGTGGGGTCAGA 60.104 55.000 0.00 0.00 0.00 3.27
477 479 0.781278 TTTTAAGGGGGTGGGGTCAG 59.219 55.000 0.00 0.00 0.00 3.51
478 480 1.359818 GATTTTAAGGGGGTGGGGTCA 59.640 52.381 0.00 0.00 0.00 4.02
479 481 1.359818 TGATTTTAAGGGGGTGGGGTC 59.640 52.381 0.00 0.00 0.00 4.46
480 482 1.361197 CTGATTTTAAGGGGGTGGGGT 59.639 52.381 0.00 0.00 0.00 4.95
481 483 1.643811 TCTGATTTTAAGGGGGTGGGG 59.356 52.381 0.00 0.00 0.00 4.96
482 484 2.358195 CCTCTGATTTTAAGGGGGTGGG 60.358 54.545 0.00 0.00 30.92 4.61
483 485 3.018423 CCTCTGATTTTAAGGGGGTGG 57.982 52.381 0.00 0.00 30.92 4.61
489 491 6.515512 TTATCTCCCCCTCTGATTTTAAGG 57.484 41.667 0.00 0.00 0.00 2.69
490 492 9.732130 CTAATTATCTCCCCCTCTGATTTTAAG 57.268 37.037 0.00 0.00 0.00 1.85
491 493 9.460413 TCTAATTATCTCCCCCTCTGATTTTAA 57.540 33.333 0.00 0.00 0.00 1.52
492 494 9.635284 ATCTAATTATCTCCCCCTCTGATTTTA 57.365 33.333 0.00 0.00 0.00 1.52
493 495 7.954539 TCTAATTATCTCCCCCTCTGATTTT 57.045 36.000 0.00 0.00 0.00 1.82
494 496 8.531362 AATCTAATTATCTCCCCCTCTGATTT 57.469 34.615 0.00 0.00 0.00 2.17
495 497 9.278011 CTAATCTAATTATCTCCCCCTCTGATT 57.722 37.037 0.00 0.00 0.00 2.57
496 498 8.637371 TCTAATCTAATTATCTCCCCCTCTGAT 58.363 37.037 0.00 0.00 0.00 2.90
497 499 8.012663 TCTAATCTAATTATCTCCCCCTCTGA 57.987 38.462 0.00 0.00 0.00 3.27
498 500 8.671987 TTCTAATCTAATTATCTCCCCCTCTG 57.328 38.462 0.00 0.00 0.00 3.35
499 501 9.332713 CTTTCTAATCTAATTATCTCCCCCTCT 57.667 37.037 0.00 0.00 0.00 3.69
500 502 9.327731 TCTTTCTAATCTAATTATCTCCCCCTC 57.672 37.037 0.00 0.00 0.00 4.30
501 503 9.332713 CTCTTTCTAATCTAATTATCTCCCCCT 57.667 37.037 0.00 0.00 0.00 4.79
502 504 9.327731 TCTCTTTCTAATCTAATTATCTCCCCC 57.672 37.037 0.00 0.00 0.00 5.40
536 538 6.827586 TCATTTTATCCTACGGCTGTTTTT 57.172 33.333 1.99 0.00 0.00 1.94
537 539 7.255139 GCTATCATTTTATCCTACGGCTGTTTT 60.255 37.037 1.99 0.00 0.00 2.43
538 540 6.204882 GCTATCATTTTATCCTACGGCTGTTT 59.795 38.462 1.99 0.00 0.00 2.83
539 541 5.701290 GCTATCATTTTATCCTACGGCTGTT 59.299 40.000 1.99 0.00 0.00 3.16
540 542 5.221641 TGCTATCATTTTATCCTACGGCTGT 60.222 40.000 2.42 2.42 0.00 4.40
541 543 5.237815 TGCTATCATTTTATCCTACGGCTG 58.762 41.667 0.00 0.00 0.00 4.85
542 544 5.483685 TGCTATCATTTTATCCTACGGCT 57.516 39.130 0.00 0.00 0.00 5.52
543 545 5.065218 CCATGCTATCATTTTATCCTACGGC 59.935 44.000 0.00 0.00 0.00 5.68
544 546 6.406370 TCCATGCTATCATTTTATCCTACGG 58.594 40.000 0.00 0.00 0.00 4.02
545 547 7.765819 TCATCCATGCTATCATTTTATCCTACG 59.234 37.037 0.00 0.00 0.00 3.51
546 548 9.453572 TTCATCCATGCTATCATTTTATCCTAC 57.546 33.333 0.00 0.00 0.00 3.18
548 550 8.945195 TTTCATCCATGCTATCATTTTATCCT 57.055 30.769 0.00 0.00 0.00 3.24
549 551 7.758528 GCTTTCATCCATGCTATCATTTTATCC 59.241 37.037 0.00 0.00 0.00 2.59
550 552 8.301720 TGCTTTCATCCATGCTATCATTTTATC 58.698 33.333 0.00 0.00 0.00 1.75
551 553 8.185506 TGCTTTCATCCATGCTATCATTTTAT 57.814 30.769 0.00 0.00 0.00 1.40
552 554 7.585579 TGCTTTCATCCATGCTATCATTTTA 57.414 32.000 0.00 0.00 0.00 1.52
553 555 6.474140 TGCTTTCATCCATGCTATCATTTT 57.526 33.333 0.00 0.00 0.00 1.82
554 556 6.665992 ATGCTTTCATCCATGCTATCATTT 57.334 33.333 0.00 0.00 0.00 2.32
555 557 7.770366 TTATGCTTTCATCCATGCTATCATT 57.230 32.000 0.00 0.00 34.22 2.57
556 558 7.668469 TCTTTATGCTTTCATCCATGCTATCAT 59.332 33.333 0.00 0.00 34.22 2.45
557 559 6.999871 TCTTTATGCTTTCATCCATGCTATCA 59.000 34.615 0.00 0.00 34.22 2.15
558 560 7.361885 CCTCTTTATGCTTTCATCCATGCTATC 60.362 40.741 0.00 0.00 34.22 2.08
559 561 6.433404 CCTCTTTATGCTTTCATCCATGCTAT 59.567 38.462 0.00 0.00 34.22 2.97
560 562 5.766670 CCTCTTTATGCTTTCATCCATGCTA 59.233 40.000 0.00 0.00 34.22 3.49
561 563 4.583489 CCTCTTTATGCTTTCATCCATGCT 59.417 41.667 0.00 0.00 34.22 3.79
562 564 4.261909 CCCTCTTTATGCTTTCATCCATGC 60.262 45.833 0.00 0.00 34.22 4.06
563 565 5.135383 TCCCTCTTTATGCTTTCATCCATG 58.865 41.667 0.00 0.00 34.22 3.66
564 566 5.383476 CTCCCTCTTTATGCTTTCATCCAT 58.617 41.667 0.00 0.00 34.22 3.41
565 567 4.785301 CTCCCTCTTTATGCTTTCATCCA 58.215 43.478 0.00 0.00 34.22 3.41
566 568 3.567585 GCTCCCTCTTTATGCTTTCATCC 59.432 47.826 0.00 0.00 34.22 3.51
567 569 4.202441 TGCTCCCTCTTTATGCTTTCATC 58.798 43.478 0.00 0.00 34.22 2.92
568 570 4.205587 CTGCTCCCTCTTTATGCTTTCAT 58.794 43.478 0.00 0.00 36.73 2.57
569 571 3.614092 CTGCTCCCTCTTTATGCTTTCA 58.386 45.455 0.00 0.00 0.00 2.69
570 572 2.948315 CCTGCTCCCTCTTTATGCTTTC 59.052 50.000 0.00 0.00 0.00 2.62
571 573 2.947695 GCCTGCTCCCTCTTTATGCTTT 60.948 50.000 0.00 0.00 0.00 3.51
572 574 1.409381 GCCTGCTCCCTCTTTATGCTT 60.409 52.381 0.00 0.00 0.00 3.91
573 575 0.182299 GCCTGCTCCCTCTTTATGCT 59.818 55.000 0.00 0.00 0.00 3.79
574 576 0.107017 TGCCTGCTCCCTCTTTATGC 60.107 55.000 0.00 0.00 0.00 3.14
575 577 2.295885 CTTGCCTGCTCCCTCTTTATG 58.704 52.381 0.00 0.00 0.00 1.90
576 578 1.409381 GCTTGCCTGCTCCCTCTTTAT 60.409 52.381 0.00 0.00 0.00 1.40
577 579 0.035056 GCTTGCCTGCTCCCTCTTTA 60.035 55.000 0.00 0.00 0.00 1.85
578 580 1.303970 GCTTGCCTGCTCCCTCTTT 60.304 57.895 0.00 0.00 0.00 2.52
579 581 2.354343 GCTTGCCTGCTCCCTCTT 59.646 61.111 0.00 0.00 0.00 2.85
580 582 2.932194 TGCTTGCCTGCTCCCTCT 60.932 61.111 0.00 0.00 0.00 3.69
581 583 2.438075 CTGCTTGCCTGCTCCCTC 60.438 66.667 0.00 0.00 0.00 4.30
582 584 4.044439 CCTGCTTGCCTGCTCCCT 62.044 66.667 0.00 0.00 0.00 4.20
583 585 3.355957 ATCCTGCTTGCCTGCTCCC 62.356 63.158 0.00 0.00 0.00 4.30
584 586 1.823041 GATCCTGCTTGCCTGCTCC 60.823 63.158 0.00 0.00 0.00 4.70
585 587 1.823041 GGATCCTGCTTGCCTGCTC 60.823 63.158 3.84 0.00 0.00 4.26
586 588 2.268167 GAGGATCCTGCTTGCCTGCT 62.268 60.000 22.02 0.00 0.00 4.24
587 589 1.823041 GAGGATCCTGCTTGCCTGC 60.823 63.158 22.02 0.00 0.00 4.85
588 590 0.255318 AAGAGGATCCTGCTTGCCTG 59.745 55.000 22.02 0.00 33.66 4.85
589 591 0.255318 CAAGAGGATCCTGCTTGCCT 59.745 55.000 26.88 14.20 33.48 4.75
590 592 0.750911 CCAAGAGGATCCTGCTTGCC 60.751 60.000 29.79 14.97 38.10 4.52
591 593 0.254178 TCCAAGAGGATCCTGCTTGC 59.746 55.000 29.79 15.54 39.61 4.01
602 604 2.100197 TCAGTCGGTACATCCAAGAGG 58.900 52.381 0.00 0.00 35.57 3.69
603 605 2.755655 AGTCAGTCGGTACATCCAAGAG 59.244 50.000 0.00 0.00 35.57 2.85
604 606 2.803956 AGTCAGTCGGTACATCCAAGA 58.196 47.619 0.00 0.00 35.57 3.02
605 607 3.695060 ACTAGTCAGTCGGTACATCCAAG 59.305 47.826 0.00 0.00 35.57 3.61
617 619 1.373570 GCAATGGGCACTAGTCAGTC 58.626 55.000 0.00 0.00 43.97 3.51
671 673 2.417558 GATAGGGGGCCCATGCTGAC 62.418 65.000 26.86 4.50 38.92 3.51
732 734 1.867233 ACTTGACATGTGTCTTGTCGC 59.133 47.619 1.15 0.00 45.14 5.19
734 736 5.484173 TTCAACTTGACATGTGTCTTGTC 57.516 39.130 1.15 3.62 44.99 3.18
735 737 5.009010 GGATTCAACTTGACATGTGTCTTGT 59.991 40.000 1.15 9.45 44.99 3.16
736 738 5.455392 GGATTCAACTTGACATGTGTCTTG 58.545 41.667 1.15 10.04 44.99 3.02
737 739 4.520492 GGGATTCAACTTGACATGTGTCTT 59.480 41.667 1.15 0.00 44.99 3.01
738 740 4.074970 GGGATTCAACTTGACATGTGTCT 58.925 43.478 1.15 0.00 44.99 3.41
739 741 3.191371 GGGGATTCAACTTGACATGTGTC 59.809 47.826 1.15 6.21 44.97 3.67
740 742 3.157087 GGGGATTCAACTTGACATGTGT 58.843 45.455 1.15 0.00 0.00 3.72
741 743 2.493278 GGGGGATTCAACTTGACATGTG 59.507 50.000 1.15 0.00 0.00 3.21
742 744 2.379907 AGGGGGATTCAACTTGACATGT 59.620 45.455 0.00 0.00 0.00 3.21
743 745 3.091633 AGGGGGATTCAACTTGACATG 57.908 47.619 0.00 0.00 0.00 3.21
744 746 3.852578 AGTAGGGGGATTCAACTTGACAT 59.147 43.478 0.00 0.00 0.00 3.06
745 747 3.256704 AGTAGGGGGATTCAACTTGACA 58.743 45.455 0.00 0.00 0.00 3.58
746 748 5.632034 ATAGTAGGGGGATTCAACTTGAC 57.368 43.478 0.00 0.00 0.00 3.18
747 749 7.313731 AGATATAGTAGGGGGATTCAACTTGA 58.686 38.462 0.00 0.00 0.00 3.02
748 750 7.560796 AGATATAGTAGGGGGATTCAACTTG 57.439 40.000 0.00 0.00 0.00 3.16
749 751 8.465971 AGTAGATATAGTAGGGGGATTCAACTT 58.534 37.037 0.00 0.00 0.00 2.66
750 752 7.896496 CAGTAGATATAGTAGGGGGATTCAACT 59.104 40.741 0.00 0.00 0.00 3.16
751 753 7.124448 CCAGTAGATATAGTAGGGGGATTCAAC 59.876 44.444 0.00 0.00 0.00 3.18
752 754 7.020270 TCCAGTAGATATAGTAGGGGGATTCAA 59.980 40.741 0.00 0.00 0.00 2.69
753 755 6.511445 TCCAGTAGATATAGTAGGGGGATTCA 59.489 42.308 0.00 0.00 0.00 2.57
754 756 6.982899 TCCAGTAGATATAGTAGGGGGATTC 58.017 44.000 0.00 0.00 0.00 2.52
755 757 7.372060 TTCCAGTAGATATAGTAGGGGGATT 57.628 40.000 0.00 0.00 0.00 3.01
756 758 7.413581 AGATTCCAGTAGATATAGTAGGGGGAT 59.586 40.741 0.00 0.00 0.00 3.85
757 759 6.745791 AGATTCCAGTAGATATAGTAGGGGGA 59.254 42.308 0.00 0.00 0.00 4.81
758 760 6.987557 AGATTCCAGTAGATATAGTAGGGGG 58.012 44.000 0.00 0.00 0.00 5.40
759 761 7.562088 GGAAGATTCCAGTAGATATAGTAGGGG 59.438 44.444 6.74 0.00 46.76 4.79
760 762 8.528044 GGAAGATTCCAGTAGATATAGTAGGG 57.472 42.308 6.74 0.00 46.76 3.53
788 790 9.214957 GTGGACGAATATAATTGACCATAATCA 57.785 33.333 3.03 0.00 32.41 2.57
828 830 8.471457 CGCATACAACATTAATTGTCTAATTGC 58.529 33.333 0.00 2.38 41.89 3.56
870 873 7.706607 CCTAGTACTAGTGTGTGTACGTATGTA 59.293 40.741 24.84 0.00 42.53 2.29
871 874 6.536582 CCTAGTACTAGTGTGTGTACGTATGT 59.463 42.308 24.84 0.00 42.53 2.29
872 875 6.536582 ACCTAGTACTAGTGTGTGTACGTATG 59.463 42.308 24.84 9.54 42.53 2.39
873 876 6.536582 CACCTAGTACTAGTGTGTGTACGTAT 59.463 42.308 26.95 5.05 42.53 3.06
892 935 1.299976 GGGTTGGACTGGCACCTAG 59.700 63.158 0.00 0.00 0.00 3.02
934 977 3.434167 GCTCCTCCTTGGAATGCTCAATA 60.434 47.826 0.00 0.00 45.63 1.90
1215 1261 3.441922 GCCAAGGAGAAGAAGAATTGGAC 59.558 47.826 5.97 0.00 39.63 4.02
1244 1290 3.065095 AGTGTAGCGATTCTTACGAGTCC 59.935 47.826 0.00 0.00 0.00 3.85
1483 1541 4.253257 GACGCCTAGGCCGACGAG 62.253 72.222 28.09 14.98 37.98 4.18
1503 1561 1.301637 CGCCGTCATGGATGCCATA 60.302 57.895 0.00 0.00 43.15 2.74
1575 1633 0.321564 TGATGAGGAAGCCGTTGGTG 60.322 55.000 0.00 0.00 0.00 4.17
1788 1846 7.332430 TGGTTCGTTCACGTAAAGAATTGATAT 59.668 33.333 0.00 0.00 37.78 1.63
1789 1847 6.645827 TGGTTCGTTCACGTAAAGAATTGATA 59.354 34.615 0.00 0.00 37.78 2.15
1790 1848 5.467399 TGGTTCGTTCACGTAAAGAATTGAT 59.533 36.000 0.00 0.00 37.78 2.57
1795 1892 4.183101 AGTTGGTTCGTTCACGTAAAGAA 58.817 39.130 0.00 0.00 40.80 2.52
1803 1900 5.177327 TCGGTAATTAAGTTGGTTCGTTCAC 59.823 40.000 0.00 0.00 0.00 3.18
1813 1910 6.017934 CCCTGACATCATCGGTAATTAAGTTG 60.018 42.308 0.00 0.00 30.80 3.16
1857 1954 3.756963 TGTATATCTTACGCAGGATCGCT 59.243 43.478 0.00 0.00 0.00 4.93
1890 1987 2.022240 GCATCTCCCTCGTCACCTCC 62.022 65.000 0.00 0.00 0.00 4.30
1985 2082 2.551270 GCACAGTTGGCGTCTTCG 59.449 61.111 0.00 0.00 40.37 3.79
2310 2407 1.134965 CCATCGAAGTGTCTGGTCTCC 60.135 57.143 0.00 0.00 0.00 3.71
2334 2431 4.175337 TAGCCCGGGCATGTGAGC 62.175 66.667 45.13 17.82 44.88 4.26
2348 2445 3.759766 GAGCTGCTCGTCCGGTAGC 62.760 68.421 14.68 16.08 41.50 3.58
2559 2656 1.227380 GATGTACAGAGCCAGCCCG 60.227 63.158 0.33 0.00 0.00 6.13
2790 2887 2.729862 ACGCAGACGAGCACGAAC 60.730 61.111 11.40 4.01 43.93 3.95
2931 3028 3.444916 CGCGCTAAATGAAGAAGGTAGA 58.555 45.455 5.56 0.00 0.00 2.59
3056 3156 5.819379 ACACGGATAAAGACTAGTCACGATA 59.181 40.000 24.44 11.54 0.00 2.92
3057 3157 4.639310 ACACGGATAAAGACTAGTCACGAT 59.361 41.667 24.44 13.37 0.00 3.73
3058 3158 4.005650 ACACGGATAAAGACTAGTCACGA 58.994 43.478 24.44 9.15 0.00 4.35
3059 3159 4.096311 CACACGGATAAAGACTAGTCACG 58.904 47.826 24.44 18.30 0.00 4.35
3060 3160 5.056894 ACACACGGATAAAGACTAGTCAC 57.943 43.478 24.44 9.85 0.00 3.67
3061 3161 5.466819 CAACACACGGATAAAGACTAGTCA 58.533 41.667 24.44 4.70 0.00 3.41
3062 3162 4.326548 GCAACACACGGATAAAGACTAGTC 59.673 45.833 15.41 15.41 0.00 2.59
3063 3163 4.243270 GCAACACACGGATAAAGACTAGT 58.757 43.478 0.00 0.00 0.00 2.57
3064 3164 4.242475 TGCAACACACGGATAAAGACTAG 58.758 43.478 0.00 0.00 0.00 2.57
3065 3165 4.260139 TGCAACACACGGATAAAGACTA 57.740 40.909 0.00 0.00 0.00 2.59
3066 3166 3.120321 TGCAACACACGGATAAAGACT 57.880 42.857 0.00 0.00 0.00 3.24
3067 3167 3.551551 GTTGCAACACACGGATAAAGAC 58.448 45.455 24.52 0.00 0.00 3.01
3068 3168 2.222213 CGTTGCAACACACGGATAAAGA 59.778 45.455 28.01 0.00 0.00 2.52
3069 3169 2.570169 CGTTGCAACACACGGATAAAG 58.430 47.619 28.01 4.46 0.00 1.85
3070 3170 1.264557 CCGTTGCAACACACGGATAAA 59.735 47.619 28.01 0.00 42.17 1.40
3071 3171 0.869068 CCGTTGCAACACACGGATAA 59.131 50.000 28.01 0.00 42.17 1.75
3072 3172 0.951525 CCCGTTGCAACACACGGATA 60.952 55.000 28.01 0.00 42.17 2.59
3073 3173 2.258013 CCCGTTGCAACACACGGAT 61.258 57.895 28.01 0.00 42.17 4.18
3074 3174 2.897846 CCCGTTGCAACACACGGA 60.898 61.111 28.01 0.00 42.17 4.69
3075 3175 3.959975 CCCCGTTGCAACACACGG 61.960 66.667 28.01 23.21 40.47 4.94
3076 3176 2.897846 TCCCCGTTGCAACACACG 60.898 61.111 28.01 15.55 0.00 4.49
3077 3177 1.658686 TTGTCCCCGTTGCAACACAC 61.659 55.000 28.01 17.59 0.00 3.82
3081 3181 2.232756 ATTTTTGTCCCCGTTGCAAC 57.767 45.000 19.89 19.89 0.00 4.17
3096 3196 5.278957 GCCCGGATATGCAACTGATTATTTT 60.279 40.000 0.73 0.00 0.00 1.82
3099 3199 3.009473 AGCCCGGATATGCAACTGATTAT 59.991 43.478 0.73 0.00 0.00 1.28
3117 3325 2.012673 CTTCACAGTCTGCATTAGCCC 58.987 52.381 0.00 0.00 41.13 5.19
3119 3327 4.756084 AAACTTCACAGTCTGCATTAGC 57.244 40.909 0.00 0.00 34.91 3.09
3155 3365 5.793026 TTCAAAAGACACACAATTTTGGC 57.207 34.783 9.10 0.00 41.83 4.52
3157 3367 9.443283 TTGTTTTTCAAAAGACACACAATTTTG 57.557 25.926 0.00 3.80 42.52 2.44
3160 3370 8.600449 TCTTGTTTTTCAAAAGACACACAATT 57.400 26.923 0.00 0.00 33.42 2.32
3174 3384 8.026607 CACTGGTTTTCTAACTCTTGTTTTTCA 58.973 33.333 0.00 0.00 37.59 2.69
3175 3385 8.241367 TCACTGGTTTTCTAACTCTTGTTTTTC 58.759 33.333 0.00 0.00 37.59 2.29
3181 3394 7.962964 TGTATCACTGGTTTTCTAACTCTTG 57.037 36.000 0.00 0.00 34.59 3.02
3184 3397 6.371825 CCCTTGTATCACTGGTTTTCTAACTC 59.628 42.308 0.00 0.00 34.59 3.01
3189 3402 3.181434 TGCCCTTGTATCACTGGTTTTCT 60.181 43.478 0.00 0.00 0.00 2.52
3208 3444 0.179140 CACCGTGTAATGCCATTGCC 60.179 55.000 0.00 0.00 36.33 4.52
3228 3464 1.278985 CACCCACCTTGTATGCTCTCA 59.721 52.381 0.00 0.00 0.00 3.27
3256 3493 2.450476 TCCTTAGTCTTCGTGGGGTAC 58.550 52.381 0.00 0.00 0.00 3.34
3265 3502 5.064452 TCACGAGACGTAATCCTTAGTCTTC 59.936 44.000 0.00 0.00 43.17 2.87
3271 3508 4.264253 TCCTTCACGAGACGTAATCCTTA 58.736 43.478 0.00 0.00 38.32 2.69
3277 3514 4.880120 ACTATCATCCTTCACGAGACGTAA 59.120 41.667 0.00 0.00 38.32 3.18
3329 3597 2.410322 ATCCAAGACCAAGCACGGCA 62.410 55.000 0.00 0.00 0.00 5.69
3352 3620 0.108377 TCACATTACGCGTCCTGCAT 60.108 50.000 18.63 0.00 46.97 3.96
3365 3633 1.216178 GCATGCGGCCTTTCACATT 59.784 52.632 0.00 0.00 36.11 2.71
3387 3655 4.966366 GTCATCGTAATGCTTGCATCTTTC 59.034 41.667 8.64 0.18 32.58 2.62
3406 3674 2.026641 GCATGGTGCTTATGGTGTCAT 58.973 47.619 0.00 0.00 40.96 3.06
3475 3745 1.075212 TGGATGGCAACCTCACATCAA 59.925 47.619 15.31 0.00 42.03 2.57
3501 3771 1.608025 GCAACACGATGACCTTCTCCA 60.608 52.381 0.00 0.00 0.00 3.86
3555 3825 0.951558 GAAGGTTTGGCGTGATGTGT 59.048 50.000 0.00 0.00 0.00 3.72
3562 3832 0.468226 TCTCACAGAAGGTTTGGCGT 59.532 50.000 0.00 0.00 0.00 5.68
3563 3833 1.532868 CTTCTCACAGAAGGTTTGGCG 59.467 52.381 5.49 0.00 46.03 5.69
3575 3845 1.073722 CAAGCTGCCCCTTCTCACA 59.926 57.895 0.00 0.00 0.00 3.58
3578 3848 3.130160 CGCAAGCTGCCCCTTCTC 61.130 66.667 0.00 0.00 41.12 2.87
3614 3884 1.580845 CTTTGCAGTCAAGAGCCCGG 61.581 60.000 0.00 0.00 33.12 5.73
3617 3887 3.213249 CATTCTTTGCAGTCAAGAGCC 57.787 47.619 0.00 0.00 33.12 4.70
3632 3902 0.244450 CACAACGCCCAATGCATTCT 59.756 50.000 9.53 0.00 41.33 2.40
3646 3917 3.876300 CGCAGCCTACCTCACAAC 58.124 61.111 0.00 0.00 0.00 3.32
3810 5550 2.740055 GACGGTGTGAGGCAGCTG 60.740 66.667 10.11 10.11 42.99 4.24
3819 5559 4.697756 ATGGCGGTGGACGGTGTG 62.698 66.667 0.00 0.00 44.51 3.82
3843 5583 3.511934 GCCCTATCTGATTAGTCGGACAT 59.488 47.826 11.27 0.00 42.35 3.06
3850 5590 4.221703 CCTTCATCGCCCTATCTGATTAGT 59.778 45.833 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.