Multiple sequence alignment - TraesCS2B01G265300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G265300 chr2B 100.000 2342 0 0 1 2342 357674575 357676916 0.000000e+00 4325.0
1 TraesCS2B01G265300 chr2B 96.294 1349 43 6 662 2007 357473621 357472277 0.000000e+00 2207.0
2 TraesCS2B01G265300 chr2B 96.445 647 22 1 1 646 357474252 357473606 0.000000e+00 1066.0
3 TraesCS2B01G265300 chr2B 98.364 489 8 0 1 489 391085542 391085054 0.000000e+00 859.0
4 TraesCS2B01G265300 chr2B 98.188 276 4 1 1686 1961 357408052 357407778 4.530000e-132 481.0
5 TraesCS2B01G265300 chr7B 96.965 692 18 3 875 1564 716785383 716786073 0.000000e+00 1158.0
6 TraesCS2B01G265300 chr7B 96.821 692 19 3 875 1564 742947962 742947272 0.000000e+00 1153.0
7 TraesCS2B01G265300 chr7A 96.965 692 18 3 875 1564 60167991 60167301 0.000000e+00 1158.0
8 TraesCS2B01G265300 chr7A 96.821 692 19 3 875 1564 60085712 60086402 0.000000e+00 1153.0
9 TraesCS2B01G265300 chr7A 100.000 335 0 0 2008 2342 609328927 609329261 9.190000e-174 619.0
10 TraesCS2B01G265300 chr7A 97.306 297 8 0 582 878 60271535 60271239 2.690000e-139 505.0
11 TraesCS2B01G265300 chr7A 98.188 276 4 1 1686 1961 671962607 671962333 4.530000e-132 481.0
12 TraesCS2B01G265300 chr7A 97.938 97 2 0 486 582 60086708 60086612 4.000000e-38 169.0
13 TraesCS2B01G265300 chr7A 98.936 94 1 0 486 579 60166995 60167088 4.000000e-38 169.0
14 TraesCS2B01G265300 chr7A 97.938 97 2 0 486 582 708249277 708249181 4.000000e-38 169.0
15 TraesCS2B01G265300 chr5A 96.965 692 18 3 875 1564 16545330 16546020 0.000000e+00 1158.0
16 TraesCS2B01G265300 chr5A 96.387 692 22 3 875 1564 420186478 420187168 0.000000e+00 1136.0
17 TraesCS2B01G265300 chr5A 100.000 335 0 0 2008 2342 74094158 74094492 9.190000e-174 619.0
18 TraesCS2B01G265300 chr5A 100.000 335 0 0 2008 2342 74101179 74101513 9.190000e-174 619.0
19 TraesCS2B01G265300 chr5A 98.023 354 5 2 1990 2342 609248604 609248956 4.280000e-172 614.0
20 TraesCS2B01G265300 chr5A 97.938 97 2 0 486 582 16546326 16546230 4.000000e-38 169.0
21 TraesCS2B01G265300 chr5A 98.936 94 1 0 486 579 238827215 238827308 4.000000e-38 169.0
22 TraesCS2B01G265300 chr5A 97.938 97 2 0 486 582 420187474 420187378 4.000000e-38 169.0
23 TraesCS2B01G265300 chrUn 96.821 692 19 3 875 1564 417899384 417900074 0.000000e+00 1153.0
24 TraesCS2B01G265300 chrUn 98.160 489 9 0 1 489 206789970 206790458 0.000000e+00 854.0
25 TraesCS2B01G265300 chrUn 98.160 489 9 0 1 489 353899509 353899021 0.000000e+00 854.0
26 TraesCS2B01G265300 chrUn 100.000 335 0 0 2008 2342 461152331 461152665 9.190000e-174 619.0
27 TraesCS2B01G265300 chrUn 96.970 297 9 0 582 878 206790882 206790586 1.250000e-137 499.0
28 TraesCS2B01G265300 chrUn 97.279 294 8 0 582 875 353898597 353898890 1.250000e-137 499.0
29 TraesCS2B01G265300 chrUn 100.000 50 0 0 1958 2007 382045907 382045956 2.480000e-15 93.5
30 TraesCS2B01G265300 chrUn 100.000 50 0 0 1958 2007 385972990 385973039 2.480000e-15 93.5
31 TraesCS2B01G265300 chrUn 100.000 50 0 0 1958 2007 434110859 434110810 2.480000e-15 93.5
32 TraesCS2B01G265300 chr2A 96.676 692 20 3 875 1564 755481325 755482015 0.000000e+00 1147.0
33 TraesCS2B01G265300 chr4D 98.364 489 8 0 1 489 123326795 123327283 0.000000e+00 859.0
34 TraesCS2B01G265300 chr4D 97.306 297 8 0 582 878 123295950 123295654 2.690000e-139 505.0
35 TraesCS2B01G265300 chr4D 100.000 50 0 0 1958 2007 123378059 123378108 2.480000e-15 93.5
36 TraesCS2B01G265300 chr4D 100.000 50 0 0 1958 2007 123588844 123588893 2.480000e-15 93.5
37 TraesCS2B01G265300 chr7D 98.160 489 9 0 1 489 203491322 203491810 0.000000e+00 854.0
38 TraesCS2B01G265300 chr7D 97.955 489 10 0 1 489 381911299 381911787 0.000000e+00 848.0
39 TraesCS2B01G265300 chr7D 97.643 297 7 0 582 878 381912211 381911915 5.770000e-141 510.0
40 TraesCS2B01G265300 chr7D 97.306 297 8 0 582 878 203492234 203491938 2.690000e-139 505.0
41 TraesCS2B01G265300 chr7D 97.619 294 7 0 582 875 381981529 381981822 2.690000e-139 505.0
42 TraesCS2B01G265300 chr7D 95.652 138 6 0 1556 1693 626645468 626645605 3.030000e-54 222.0
43 TraesCS2B01G265300 chr6D 97.955 489 10 0 1 489 124508846 124509334 0.000000e+00 848.0
44 TraesCS2B01G265300 chr6D 96.970 297 9 0 582 878 124509758 124509462 1.250000e-137 499.0
45 TraesCS2B01G265300 chr6D 97.826 276 5 1 1686 1961 283172157 283171883 2.110000e-130 475.0
46 TraesCS2B01G265300 chr6D 95.652 138 6 0 1556 1693 159818109 159818246 3.030000e-54 222.0
47 TraesCS2B01G265300 chr6D 100.000 50 0 0 1958 2007 436100720 436100671 2.480000e-15 93.5
48 TraesCS2B01G265300 chr3D 97.955 489 10 0 1 489 213373787 213374275 0.000000e+00 848.0
49 TraesCS2B01G265300 chr6B 100.000 335 0 0 2008 2342 707239321 707238987 9.190000e-174 619.0
50 TraesCS2B01G265300 chr6B 97.037 135 4 0 1559 1693 264911574 264911440 6.510000e-56 228.0
51 TraesCS2B01G265300 chr5B 100.000 335 0 0 2008 2342 421421386 421421052 9.190000e-174 619.0
52 TraesCS2B01G265300 chr4B 100.000 335 0 0 2008 2342 460769214 460769548 9.190000e-174 619.0
53 TraesCS2B01G265300 chr4B 97.938 97 2 0 486 582 495554482 495554386 4.000000e-38 169.0
54 TraesCS2B01G265300 chr4B 96.491 57 1 1 1952 2007 209056236 209056292 2.480000e-15 93.5
55 TraesCS2B01G265300 chr1B 99.702 336 1 0 2007 2342 670222830 670222495 1.190000e-172 616.0
56 TraesCS2B01G265300 chr1B 98.551 276 2 2 1686 1961 53341712 53341439 9.730000e-134 486.0
57 TraesCS2B01G265300 chr1B 98.188 276 4 1 1686 1961 47393853 47393579 4.530000e-132 481.0
58 TraesCS2B01G265300 chr1B 98.188 276 4 1 1686 1961 339002078 339002352 4.530000e-132 481.0
59 TraesCS2B01G265300 chr1B 98.188 276 4 1 1686 1961 583502792 583502518 4.530000e-132 481.0
60 TraesCS2B01G265300 chr1B 96.296 135 5 0 1559 1693 133733062 133732928 3.030000e-54 222.0
61 TraesCS2B01G265300 chr1B 96.296 135 5 0 1559 1693 339054978 339054844 3.030000e-54 222.0
62 TraesCS2B01G265300 chr2D 97.619 294 7 0 582 875 604387592 604387885 2.690000e-139 505.0
63 TraesCS2B01G265300 chr4A 98.188 276 4 1 1686 1961 73805473 73805199 4.530000e-132 481.0
64 TraesCS2B01G265300 chr4A 95.652 138 6 0 1556 1693 552144155 552144292 3.030000e-54 222.0
65 TraesCS2B01G265300 chr6A 96.296 135 5 0 1559 1693 375874183 375874049 3.030000e-54 222.0
66 TraesCS2B01G265300 chr1D 95.652 138 6 0 1556 1693 493799685 493799822 3.030000e-54 222.0
67 TraesCS2B01G265300 chr3B 100.000 92 0 0 486 577 173955892 173955801 1.110000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G265300 chr2B 357674575 357676916 2341 False 4325.0 4325 100.0000 1 2342 1 chr2B.!!$F1 2341
1 TraesCS2B01G265300 chr2B 357472277 357474252 1975 True 1636.5 2207 96.3695 1 2007 2 chr2B.!!$R3 2006
2 TraesCS2B01G265300 chr7B 716785383 716786073 690 False 1158.0 1158 96.9650 875 1564 1 chr7B.!!$F1 689
3 TraesCS2B01G265300 chr7B 742947272 742947962 690 True 1153.0 1153 96.8210 875 1564 1 chr7B.!!$R1 689
4 TraesCS2B01G265300 chr7A 60167301 60167991 690 True 1158.0 1158 96.9650 875 1564 1 chr7A.!!$R2 689
5 TraesCS2B01G265300 chr7A 60085712 60086402 690 False 1153.0 1153 96.8210 875 1564 1 chr7A.!!$F1 689
6 TraesCS2B01G265300 chr5A 16545330 16546020 690 False 1158.0 1158 96.9650 875 1564 1 chr5A.!!$F1 689
7 TraesCS2B01G265300 chr5A 420186478 420187168 690 False 1136.0 1136 96.3870 875 1564 1 chr5A.!!$F5 689
8 TraesCS2B01G265300 chrUn 417899384 417900074 690 False 1153.0 1153 96.8210 875 1564 1 chrUn.!!$F5 689
9 TraesCS2B01G265300 chr2A 755481325 755482015 690 False 1147.0 1147 96.6760 875 1564 1 chr2A.!!$F1 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.322546 ACAGGTTCAATCGGGCTTCC 60.323 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1660 1662 1.699634 GCTGCCCAAGGATATGGTCTA 59.3 52.381 0.0 0.0 38.91 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 0.322546 ACAGGTTCAATCGGGCTTCC 60.323 55.000 0.00 0.00 0.00 3.46
118 119 0.901827 TATTCCTCGCTTCTGGCACA 59.098 50.000 0.00 0.00 41.91 4.57
136 137 5.472137 TGGCACATGTAACTCTTACCTTTTC 59.528 40.000 0.00 0.00 35.25 2.29
156 157 8.960591 CCTTTTCTATCTATGTGTGGTTTTCAT 58.039 33.333 0.00 0.00 0.00 2.57
189 190 9.853177 CTATTTTATCAACCTATGGACTCCTTT 57.147 33.333 0.00 0.00 0.00 3.11
195 196 5.250543 TCAACCTATGGACTCCTTTCAATGA 59.749 40.000 0.00 0.00 0.00 2.57
206 207 5.762218 ACTCCTTTCAATGACAGAGTCTTTG 59.238 40.000 15.55 15.55 44.00 2.77
315 316 1.287146 AGACTGACCGGTATACCTGGT 59.713 52.381 27.73 27.73 42.60 4.00
349 350 5.929697 TGAGCCATATTCATCAATTCGTC 57.070 39.130 0.00 0.00 0.00 4.20
353 354 4.756642 GCCATATTCATCAATTCGTCAGGA 59.243 41.667 0.00 0.00 0.00 3.86
438 439 7.560796 AGAGAACCCTTCTTATCAAAGAGAA 57.439 36.000 0.00 0.00 42.60 2.87
525 526 2.225091 TGTTCAGGATCCCATGCTTTGT 60.225 45.455 8.55 0.00 0.00 2.83
554 555 3.262420 GCATGGCTTTCTCTAACGAAGA 58.738 45.455 0.00 0.00 0.00 2.87
635 636 8.777865 TTGTCTGTAGTGATATTTTGGAGAAG 57.222 34.615 0.00 0.00 0.00 2.85
636 637 7.331026 TGTCTGTAGTGATATTTTGGAGAAGG 58.669 38.462 0.00 0.00 0.00 3.46
637 638 7.180229 TGTCTGTAGTGATATTTTGGAGAAGGA 59.820 37.037 0.00 0.00 0.00 3.36
638 639 7.708752 GTCTGTAGTGATATTTTGGAGAAGGAG 59.291 40.741 0.00 0.00 0.00 3.69
639 640 6.349300 TGTAGTGATATTTTGGAGAAGGAGC 58.651 40.000 0.00 0.00 0.00 4.70
640 641 5.441718 AGTGATATTTTGGAGAAGGAGCA 57.558 39.130 0.00 0.00 0.00 4.26
641 642 5.819991 AGTGATATTTTGGAGAAGGAGCAA 58.180 37.500 0.00 0.00 0.00 3.91
642 643 6.430007 AGTGATATTTTGGAGAAGGAGCAAT 58.570 36.000 0.00 0.00 0.00 3.56
643 644 6.894103 AGTGATATTTTGGAGAAGGAGCAATT 59.106 34.615 0.00 0.00 0.00 2.32
644 645 8.055181 AGTGATATTTTGGAGAAGGAGCAATTA 58.945 33.333 0.00 0.00 0.00 1.40
645 646 8.131731 GTGATATTTTGGAGAAGGAGCAATTAC 58.868 37.037 0.00 0.00 0.00 1.89
646 647 5.921962 ATTTTGGAGAAGGAGCAATTACC 57.078 39.130 0.00 0.00 0.00 2.85
647 648 2.691409 TGGAGAAGGAGCAATTACCG 57.309 50.000 0.00 0.00 0.00 4.02
648 649 1.209504 TGGAGAAGGAGCAATTACCGG 59.790 52.381 0.00 0.00 0.00 5.28
649 650 1.485066 GGAGAAGGAGCAATTACCGGA 59.515 52.381 9.46 0.00 0.00 5.14
650 651 2.483889 GGAGAAGGAGCAATTACCGGAG 60.484 54.545 9.46 0.00 0.00 4.63
651 652 2.168728 GAGAAGGAGCAATTACCGGAGT 59.831 50.000 9.46 0.00 0.00 3.85
652 653 2.093447 AGAAGGAGCAATTACCGGAGTG 60.093 50.000 9.46 0.00 0.00 3.51
653 654 1.568504 AGGAGCAATTACCGGAGTGA 58.431 50.000 9.46 0.00 0.00 3.41
654 655 1.482593 AGGAGCAATTACCGGAGTGAG 59.517 52.381 9.46 0.00 0.00 3.51
655 656 1.480954 GGAGCAATTACCGGAGTGAGA 59.519 52.381 9.46 0.00 0.00 3.27
656 657 2.093658 GGAGCAATTACCGGAGTGAGAA 60.094 50.000 9.46 0.00 0.00 2.87
657 658 3.596214 GAGCAATTACCGGAGTGAGAAA 58.404 45.455 9.46 0.00 0.00 2.52
658 659 3.600388 AGCAATTACCGGAGTGAGAAAG 58.400 45.455 9.46 0.00 0.00 2.62
659 660 2.678336 GCAATTACCGGAGTGAGAAAGG 59.322 50.000 9.46 0.00 0.00 3.11
660 661 3.868754 GCAATTACCGGAGTGAGAAAGGT 60.869 47.826 9.46 0.00 38.86 3.50
661 662 4.622220 GCAATTACCGGAGTGAGAAAGGTA 60.622 45.833 9.46 0.00 36.49 3.08
662 663 5.109903 CAATTACCGGAGTGAGAAAGGTAG 58.890 45.833 9.46 0.00 38.50 3.18
663 664 2.599408 ACCGGAGTGAGAAAGGTAGA 57.401 50.000 9.46 0.00 32.76 2.59
664 665 2.885616 ACCGGAGTGAGAAAGGTAGAA 58.114 47.619 9.46 0.00 32.76 2.10
722 723 8.752254 GGCTTTTTGTACTAATCTTGTTTGTTC 58.248 33.333 0.00 0.00 0.00 3.18
779 780 1.247567 CGAGGCTTTTTCCACCACAT 58.752 50.000 0.00 0.00 0.00 3.21
780 781 1.200020 CGAGGCTTTTTCCACCACATC 59.800 52.381 0.00 0.00 0.00 3.06
786 787 0.856982 TTTTCCACCACATCAGGGGT 59.143 50.000 0.00 0.00 38.10 4.95
861 862 6.959361 TGTTTGAACAAGAAGAAGTAGCATC 58.041 36.000 0.00 0.00 35.67 3.91
891 892 3.428999 CGGGGCTGATGATTACCTATACG 60.429 52.174 0.00 0.00 0.00 3.06
898 899 7.261325 GCTGATGATTACCTATACGTGATGAT 58.739 38.462 0.00 0.00 0.00 2.45
1122 1123 8.814038 AGATGTTAGAAGGTGCTAAATCAATT 57.186 30.769 0.00 0.00 32.58 2.32
1198 1199 4.932200 ACGTCCTCAGTTCTTTGATTCATC 59.068 41.667 0.00 0.00 0.00 2.92
1202 1203 3.609853 TCAGTTCTTTGATTCATCCCGG 58.390 45.455 0.00 0.00 0.00 5.73
1203 1204 3.009033 TCAGTTCTTTGATTCATCCCGGT 59.991 43.478 0.00 0.00 0.00 5.28
1206 1207 1.004161 TCTTTGATTCATCCCGGTGCA 59.996 47.619 0.00 0.00 0.00 4.57
1303 1304 3.222287 GCCCCAATGATGGCCTTTA 57.778 52.632 3.32 0.00 46.09 1.85
1313 1314 6.127703 CCAATGATGGCCTTTATGATCTCATC 60.128 42.308 3.32 0.00 40.58 2.92
1322 1323 5.822519 CCTTTATGATCTCATCCGTTTTCCA 59.177 40.000 0.00 0.00 37.76 3.53
1436 1438 3.763097 TGAATTGGATGATGTGCGTTC 57.237 42.857 0.00 0.00 0.00 3.95
1491 1493 3.131396 GCAATTTCAGTACCGGATCGAT 58.869 45.455 9.46 0.00 0.00 3.59
1566 1568 5.745227 TCTGGAAGGCCTTACTTTCTATTG 58.255 41.667 28.16 8.36 34.31 1.90
1576 1578 7.717436 GGCCTTACTTTCTATTGCTCTCTTATT 59.283 37.037 0.00 0.00 0.00 1.40
1610 1612 8.117813 TCCTCCGCTTAATTTCAAAATTTACT 57.882 30.769 6.06 0.00 39.24 2.24
1633 1635 4.406003 TCAGCCTTTTGAGTACTAGGATCC 59.594 45.833 12.77 2.48 0.00 3.36
1659 1661 3.444388 CCTTATCCTAGCAGATCGGTACC 59.556 52.174 0.16 0.16 0.00 3.34
1660 1662 2.982339 ATCCTAGCAGATCGGTACCT 57.018 50.000 10.90 0.00 0.00 3.08
1857 1859 2.128771 TAGGTGCTGGCCATTCTTTC 57.871 50.000 5.51 0.00 0.00 2.62
1910 1912 9.707957 AGATAGACCCTATCCTTAGATAACATG 57.292 37.037 9.62 0.00 34.53 3.21
2013 2015 8.463930 ACTTGAAGAGTGATATTTTTGTTGGA 57.536 30.769 0.00 0.00 37.17 3.53
2014 2016 8.912988 ACTTGAAGAGTGATATTTTTGTTGGAA 58.087 29.630 0.00 0.00 37.17 3.53
2015 2017 9.748708 CTTGAAGAGTGATATTTTTGTTGGAAA 57.251 29.630 0.00 0.00 0.00 3.13
2020 2022 9.807649 AGAGTGATATTTTTGTTGGAAATATGC 57.192 29.630 6.77 1.80 38.89 3.14
2021 2023 8.947055 AGTGATATTTTTGTTGGAAATATGCC 57.053 30.769 6.77 0.00 38.89 4.40
2022 2024 7.986889 AGTGATATTTTTGTTGGAAATATGCCC 59.013 33.333 6.77 0.00 38.89 5.36
2023 2025 7.986889 GTGATATTTTTGTTGGAAATATGCCCT 59.013 33.333 6.77 0.00 38.89 5.19
2024 2026 9.206690 TGATATTTTTGTTGGAAATATGCCCTA 57.793 29.630 6.77 0.00 38.89 3.53
2025 2027 9.696917 GATATTTTTGTTGGAAATATGCCCTAG 57.303 33.333 6.77 0.00 38.89 3.02
2026 2028 7.732222 ATTTTTGTTGGAAATATGCCCTAGA 57.268 32.000 0.00 0.00 0.00 2.43
2027 2029 6.773976 TTTTGTTGGAAATATGCCCTAGAG 57.226 37.500 0.00 0.00 0.00 2.43
2028 2030 4.437682 TGTTGGAAATATGCCCTAGAGG 57.562 45.455 0.00 0.00 39.47 3.69
2103 2105 8.948631 ATTCATGCTATAACTGTATTATCCGG 57.051 34.615 0.00 0.00 0.00 5.14
2104 2106 7.712204 TCATGCTATAACTGTATTATCCGGA 57.288 36.000 6.61 6.61 0.00 5.14
2105 2107 8.129496 TCATGCTATAACTGTATTATCCGGAA 57.871 34.615 9.01 0.00 0.00 4.30
2106 2108 8.590204 TCATGCTATAACTGTATTATCCGGAAA 58.410 33.333 9.01 4.74 0.00 3.13
2107 2109 9.383519 CATGCTATAACTGTATTATCCGGAAAT 57.616 33.333 9.01 12.31 0.00 2.17
2108 2110 8.997621 TGCTATAACTGTATTATCCGGAAATC 57.002 34.615 9.01 5.33 0.00 2.17
2109 2111 7.758076 TGCTATAACTGTATTATCCGGAAATCG 59.242 37.037 9.01 5.25 38.88 3.34
2110 2112 7.758528 GCTATAACTGTATTATCCGGAAATCGT 59.241 37.037 9.01 5.81 37.11 3.73
2115 2117 8.976986 ACTGTATTATCCGGAAATCGTAATAC 57.023 34.615 25.06 25.06 40.20 1.89
2116 2118 8.579006 ACTGTATTATCCGGAAATCGTAATACA 58.421 33.333 28.89 28.89 43.27 2.29
2117 2119 8.746922 TGTATTATCCGGAAATCGTAATACAC 57.253 34.615 28.04 16.29 42.13 2.90
2133 2135 8.032737 CGTAATACACGTGTGAATACTTAGAC 57.967 38.462 30.83 12.02 45.82 2.59
2134 2136 7.164826 CGTAATACACGTGTGAATACTTAGACC 59.835 40.741 30.83 6.57 45.82 3.85
2135 2137 4.859304 ACACGTGTGAATACTTAGACCA 57.141 40.909 22.71 0.00 0.00 4.02
2136 2138 4.553323 ACACGTGTGAATACTTAGACCAC 58.447 43.478 22.71 0.00 0.00 4.16
2137 2139 4.038282 ACACGTGTGAATACTTAGACCACA 59.962 41.667 22.71 0.00 35.65 4.17
2138 2140 4.986034 CACGTGTGAATACTTAGACCACAA 59.014 41.667 7.58 0.00 39.13 3.33
2139 2141 5.637810 CACGTGTGAATACTTAGACCACAAT 59.362 40.000 7.58 0.00 39.13 2.71
2140 2142 6.809689 CACGTGTGAATACTTAGACCACAATA 59.190 38.462 7.58 0.00 39.13 1.90
2141 2143 7.491372 CACGTGTGAATACTTAGACCACAATAT 59.509 37.037 7.58 0.00 39.13 1.28
2142 2144 7.491372 ACGTGTGAATACTTAGACCACAATATG 59.509 37.037 0.00 0.00 39.13 1.78
2143 2145 7.491372 CGTGTGAATACTTAGACCACAATATGT 59.509 37.037 0.00 0.00 39.13 2.29
2144 2146 8.818057 GTGTGAATACTTAGACCACAATATGTC 58.182 37.037 0.00 0.00 39.13 3.06
2145 2147 7.985184 TGTGAATACTTAGACCACAATATGTCC 59.015 37.037 0.00 0.00 35.16 4.02
2146 2148 7.441458 GTGAATACTTAGACCACAATATGTCCC 59.559 40.741 0.00 0.00 31.76 4.46
2147 2149 7.347222 TGAATACTTAGACCACAATATGTCCCT 59.653 37.037 0.00 0.00 31.76 4.20
2148 2150 5.359194 ACTTAGACCACAATATGTCCCTG 57.641 43.478 0.00 0.00 31.76 4.45
2149 2151 4.164221 ACTTAGACCACAATATGTCCCTGG 59.836 45.833 0.00 0.00 31.76 4.45
2150 2152 2.562296 AGACCACAATATGTCCCTGGT 58.438 47.619 0.00 0.00 31.76 4.00
2151 2153 3.731431 AGACCACAATATGTCCCTGGTA 58.269 45.455 0.00 0.00 31.76 3.25
2152 2154 4.108570 AGACCACAATATGTCCCTGGTAA 58.891 43.478 0.00 0.00 31.76 2.85
2153 2155 4.164221 AGACCACAATATGTCCCTGGTAAG 59.836 45.833 0.00 0.00 31.76 2.34
2154 2156 3.214328 CCACAATATGTCCCTGGTAAGC 58.786 50.000 0.00 0.00 0.00 3.09
2155 2157 3.214328 CACAATATGTCCCTGGTAAGCC 58.786 50.000 0.00 0.00 0.00 4.35
2156 2158 3.117888 CACAATATGTCCCTGGTAAGCCT 60.118 47.826 0.00 0.00 35.27 4.58
2157 2159 3.136626 ACAATATGTCCCTGGTAAGCCTC 59.863 47.826 0.00 0.00 35.27 4.70
2158 2160 2.868964 TATGTCCCTGGTAAGCCTCT 57.131 50.000 0.00 0.00 35.27 3.69
2159 2161 2.868964 ATGTCCCTGGTAAGCCTCTA 57.131 50.000 0.00 0.00 35.27 2.43
2160 2162 2.160721 TGTCCCTGGTAAGCCTCTAG 57.839 55.000 0.00 0.00 35.27 2.43
2161 2163 1.361543 TGTCCCTGGTAAGCCTCTAGT 59.638 52.381 0.00 0.00 35.27 2.57
2162 2164 2.225547 TGTCCCTGGTAAGCCTCTAGTT 60.226 50.000 0.00 0.00 35.27 2.24
2163 2165 2.168728 GTCCCTGGTAAGCCTCTAGTTG 59.831 54.545 0.00 0.00 35.27 3.16
2164 2166 2.043939 TCCCTGGTAAGCCTCTAGTTGA 59.956 50.000 0.00 0.00 35.27 3.18
2165 2167 2.168728 CCCTGGTAAGCCTCTAGTTGAC 59.831 54.545 0.00 0.00 35.27 3.18
2166 2168 2.168728 CCTGGTAAGCCTCTAGTTGACC 59.831 54.545 0.00 0.00 35.27 4.02
2167 2169 2.832129 CTGGTAAGCCTCTAGTTGACCA 59.168 50.000 0.00 0.00 34.44 4.02
2168 2170 2.832129 TGGTAAGCCTCTAGTTGACCAG 59.168 50.000 0.00 0.00 31.94 4.00
2169 2171 2.418884 GGTAAGCCTCTAGTTGACCAGC 60.419 54.545 0.00 0.00 0.00 4.85
2170 2172 1.650528 AAGCCTCTAGTTGACCAGCT 58.349 50.000 0.00 0.00 0.00 4.24
2171 2173 1.650528 AGCCTCTAGTTGACCAGCTT 58.349 50.000 0.00 0.00 0.00 3.74
2172 2174 1.277557 AGCCTCTAGTTGACCAGCTTG 59.722 52.381 0.00 0.00 0.00 4.01
2173 2175 1.002544 GCCTCTAGTTGACCAGCTTGT 59.997 52.381 0.00 0.00 0.00 3.16
2174 2176 2.551071 GCCTCTAGTTGACCAGCTTGTT 60.551 50.000 0.00 0.00 0.00 2.83
2175 2177 3.070018 CCTCTAGTTGACCAGCTTGTTG 58.930 50.000 0.00 0.00 0.00 3.33
2176 2178 3.495100 CCTCTAGTTGACCAGCTTGTTGT 60.495 47.826 0.00 0.00 0.00 3.32
2177 2179 3.466836 TCTAGTTGACCAGCTTGTTGTG 58.533 45.455 0.00 0.00 0.00 3.33
2178 2180 2.418368 AGTTGACCAGCTTGTTGTGA 57.582 45.000 0.00 0.00 0.00 3.58
2179 2181 2.936202 AGTTGACCAGCTTGTTGTGAT 58.064 42.857 0.00 0.00 0.00 3.06
2180 2182 2.880890 AGTTGACCAGCTTGTTGTGATC 59.119 45.455 0.00 0.00 0.00 2.92
2181 2183 2.618241 GTTGACCAGCTTGTTGTGATCA 59.382 45.455 0.00 0.00 0.00 2.92
2182 2184 2.929641 TGACCAGCTTGTTGTGATCAA 58.070 42.857 0.00 0.00 0.00 2.57
2196 2198 5.682234 TGTGATCAACAGATAGTCATGGT 57.318 39.130 0.00 0.00 33.78 3.55
2197 2199 6.053632 TGTGATCAACAGATAGTCATGGTT 57.946 37.500 0.00 0.00 33.78 3.67
2198 2200 6.475504 TGTGATCAACAGATAGTCATGGTTT 58.524 36.000 0.00 0.00 33.78 3.27
2199 2201 6.595326 TGTGATCAACAGATAGTCATGGTTTC 59.405 38.462 0.00 0.00 33.78 2.78
2200 2202 6.037610 GTGATCAACAGATAGTCATGGTTTCC 59.962 42.308 0.00 0.00 0.00 3.13
2201 2203 5.762179 TCAACAGATAGTCATGGTTTCCT 57.238 39.130 0.00 0.00 0.00 3.36
2202 2204 5.491070 TCAACAGATAGTCATGGTTTCCTG 58.509 41.667 0.00 0.00 0.00 3.86
2203 2205 5.248248 TCAACAGATAGTCATGGTTTCCTGA 59.752 40.000 10.65 0.00 0.00 3.86
2204 2206 5.091261 ACAGATAGTCATGGTTTCCTGAC 57.909 43.478 10.65 8.96 41.65 3.51
2210 2212 4.487714 GTCATGGTTTCCTGACTATGGA 57.512 45.455 0.00 0.00 38.56 3.41
2211 2213 4.192317 GTCATGGTTTCCTGACTATGGAC 58.808 47.826 0.00 0.00 38.56 4.02
2212 2214 3.843619 TCATGGTTTCCTGACTATGGACA 59.156 43.478 0.00 0.00 38.56 4.02
2213 2215 4.474651 TCATGGTTTCCTGACTATGGACAT 59.525 41.667 0.00 0.00 38.56 3.06
2214 2216 4.927267 TGGTTTCCTGACTATGGACATT 57.073 40.909 0.00 0.00 32.65 2.71
2215 2217 4.588899 TGGTTTCCTGACTATGGACATTG 58.411 43.478 0.00 0.00 32.65 2.82
2216 2218 3.947834 GGTTTCCTGACTATGGACATTGG 59.052 47.826 0.00 0.00 32.65 3.16
2217 2219 4.324254 GGTTTCCTGACTATGGACATTGGA 60.324 45.833 0.00 0.00 32.65 3.53
2218 2220 5.440610 GTTTCCTGACTATGGACATTGGAT 58.559 41.667 0.00 0.00 32.65 3.41
2219 2221 4.694760 TCCTGACTATGGACATTGGATG 57.305 45.455 0.00 0.00 0.00 3.51
2246 2248 7.121974 GTTGATAACGGGATCACATCATTAG 57.878 40.000 0.00 0.00 35.56 1.73
2247 2249 5.793817 TGATAACGGGATCACATCATTAGG 58.206 41.667 0.00 0.00 30.75 2.69
2248 2250 5.542251 TGATAACGGGATCACATCATTAGGA 59.458 40.000 0.00 0.00 30.75 2.94
2249 2251 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
2250 2252 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
2251 2253 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
2252 2254 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
2253 2255 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
2254 2256 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
2255 2257 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
2263 2265 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
2264 2266 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
2265 2267 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
2266 2268 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
2267 2269 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
2268 2270 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
2269 2271 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
2270 2272 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
2271 2273 2.787473 TGATGTGATGGACAAGACCC 57.213 50.000 0.00 0.00 38.36 4.46
2272 2274 1.984424 TGATGTGATGGACAAGACCCA 59.016 47.619 0.00 0.00 38.36 4.51
2273 2275 2.374839 TGATGTGATGGACAAGACCCAA 59.625 45.455 0.00 0.00 38.36 4.12
2274 2276 3.010472 TGATGTGATGGACAAGACCCAAT 59.990 43.478 0.00 0.00 38.36 3.16
2275 2277 3.071874 TGTGATGGACAAGACCCAATC 57.928 47.619 0.00 0.00 37.22 2.67
2276 2278 2.290896 TGTGATGGACAAGACCCAATCC 60.291 50.000 0.00 0.00 37.22 3.01
2277 2279 2.025887 GTGATGGACAAGACCCAATCCT 60.026 50.000 0.00 0.00 37.22 3.24
2278 2280 3.199946 GTGATGGACAAGACCCAATCCTA 59.800 47.826 0.00 0.00 37.22 2.94
2279 2281 3.849574 TGATGGACAAGACCCAATCCTAA 59.150 43.478 0.00 0.00 37.22 2.69
2280 2282 4.080356 TGATGGACAAGACCCAATCCTAAG 60.080 45.833 0.00 0.00 37.22 2.18
2281 2283 2.026262 TGGACAAGACCCAATCCTAAGC 60.026 50.000 0.00 0.00 32.06 3.09
2282 2284 2.026262 GGACAAGACCCAATCCTAAGCA 60.026 50.000 0.00 0.00 0.00 3.91
2283 2285 3.372025 GGACAAGACCCAATCCTAAGCAT 60.372 47.826 0.00 0.00 0.00 3.79
2284 2286 4.141482 GGACAAGACCCAATCCTAAGCATA 60.141 45.833 0.00 0.00 0.00 3.14
2285 2287 5.041191 ACAAGACCCAATCCTAAGCATAG 57.959 43.478 0.00 0.00 0.00 2.23
2286 2288 3.778954 AGACCCAATCCTAAGCATAGC 57.221 47.619 0.00 0.00 0.00 2.97
2287 2289 3.048600 AGACCCAATCCTAAGCATAGCA 58.951 45.455 0.00 0.00 0.00 3.49
2288 2290 3.654806 AGACCCAATCCTAAGCATAGCAT 59.345 43.478 0.00 0.00 0.00 3.79
2289 2291 4.846367 AGACCCAATCCTAAGCATAGCATA 59.154 41.667 0.00 0.00 0.00 3.14
2290 2292 5.310594 AGACCCAATCCTAAGCATAGCATAA 59.689 40.000 0.00 0.00 0.00 1.90
2291 2293 5.952387 ACCCAATCCTAAGCATAGCATAAA 58.048 37.500 0.00 0.00 0.00 1.40
2292 2294 6.372931 ACCCAATCCTAAGCATAGCATAAAA 58.627 36.000 0.00 0.00 0.00 1.52
2293 2295 6.491403 ACCCAATCCTAAGCATAGCATAAAAG 59.509 38.462 0.00 0.00 0.00 2.27
2294 2296 6.716628 CCCAATCCTAAGCATAGCATAAAAGA 59.283 38.462 0.00 0.00 0.00 2.52
2295 2297 7.395489 CCCAATCCTAAGCATAGCATAAAAGAT 59.605 37.037 0.00 0.00 0.00 2.40
2296 2298 8.457261 CCAATCCTAAGCATAGCATAAAAGATC 58.543 37.037 0.00 0.00 0.00 2.75
2297 2299 7.840342 ATCCTAAGCATAGCATAAAAGATCG 57.160 36.000 0.00 0.00 0.00 3.69
2298 2300 6.759272 TCCTAAGCATAGCATAAAAGATCGT 58.241 36.000 0.00 0.00 0.00 3.73
2299 2301 6.646653 TCCTAAGCATAGCATAAAAGATCGTG 59.353 38.462 0.00 0.00 0.00 4.35
2300 2302 6.425114 CCTAAGCATAGCATAAAAGATCGTGT 59.575 38.462 0.00 0.00 0.00 4.49
2301 2303 7.598869 CCTAAGCATAGCATAAAAGATCGTGTA 59.401 37.037 0.00 0.00 0.00 2.90
2302 2304 7.413475 AAGCATAGCATAAAAGATCGTGTAG 57.587 36.000 0.00 0.00 0.00 2.74
2303 2305 6.516718 AGCATAGCATAAAAGATCGTGTAGT 58.483 36.000 0.00 0.00 0.00 2.73
2304 2306 6.986817 AGCATAGCATAAAAGATCGTGTAGTT 59.013 34.615 0.00 0.00 0.00 2.24
2305 2307 7.169982 AGCATAGCATAAAAGATCGTGTAGTTC 59.830 37.037 0.00 0.00 0.00 3.01
2306 2308 5.950965 AGCATAAAAGATCGTGTAGTTCG 57.049 39.130 0.00 0.00 0.00 3.95
2307 2309 5.408356 AGCATAAAAGATCGTGTAGTTCGT 58.592 37.500 0.00 0.00 0.00 3.85
2308 2310 6.558009 AGCATAAAAGATCGTGTAGTTCGTA 58.442 36.000 0.00 0.00 0.00 3.43
2309 2311 7.201145 AGCATAAAAGATCGTGTAGTTCGTAT 58.799 34.615 0.00 0.00 0.00 3.06
2310 2312 7.705325 AGCATAAAAGATCGTGTAGTTCGTATT 59.295 33.333 0.00 0.00 0.00 1.89
2311 2313 7.787935 GCATAAAAGATCGTGTAGTTCGTATTG 59.212 37.037 0.00 0.00 0.00 1.90
2312 2314 5.697848 AAAGATCGTGTAGTTCGTATTGC 57.302 39.130 0.00 0.00 0.00 3.56
2313 2315 4.634184 AGATCGTGTAGTTCGTATTGCT 57.366 40.909 0.00 0.00 0.00 3.91
2314 2316 5.746307 AGATCGTGTAGTTCGTATTGCTA 57.254 39.130 0.00 0.00 0.00 3.49
2315 2317 5.749620 AGATCGTGTAGTTCGTATTGCTAG 58.250 41.667 0.00 0.00 0.00 3.42
2316 2318 5.526479 AGATCGTGTAGTTCGTATTGCTAGA 59.474 40.000 0.00 0.00 0.00 2.43
2317 2319 5.152923 TCGTGTAGTTCGTATTGCTAGAG 57.847 43.478 0.00 0.00 0.00 2.43
2318 2320 3.724751 CGTGTAGTTCGTATTGCTAGAGC 59.275 47.826 0.00 0.00 42.50 4.09
2319 2321 4.496010 CGTGTAGTTCGTATTGCTAGAGCT 60.496 45.833 2.72 0.00 42.66 4.09
2320 2322 5.341617 GTGTAGTTCGTATTGCTAGAGCTT 58.658 41.667 2.72 0.00 42.66 3.74
2321 2323 5.805994 GTGTAGTTCGTATTGCTAGAGCTTT 59.194 40.000 2.72 0.00 42.66 3.51
2322 2324 5.805486 TGTAGTTCGTATTGCTAGAGCTTTG 59.195 40.000 2.72 0.00 42.66 2.77
2323 2325 4.822026 AGTTCGTATTGCTAGAGCTTTGT 58.178 39.130 2.72 0.00 42.66 2.83
2324 2326 4.865365 AGTTCGTATTGCTAGAGCTTTGTC 59.135 41.667 2.72 0.00 42.66 3.18
2325 2327 4.450082 TCGTATTGCTAGAGCTTTGTCA 57.550 40.909 2.72 0.00 42.66 3.58
2326 2328 4.816392 TCGTATTGCTAGAGCTTTGTCAA 58.184 39.130 2.72 0.00 42.66 3.18
2327 2329 5.419542 TCGTATTGCTAGAGCTTTGTCAAT 58.580 37.500 2.72 9.56 42.66 2.57
2328 2330 5.291858 TCGTATTGCTAGAGCTTTGTCAATG 59.708 40.000 12.79 0.00 42.66 2.82
2329 2331 5.063944 CGTATTGCTAGAGCTTTGTCAATGT 59.936 40.000 12.79 0.00 42.66 2.71
2330 2332 5.557891 ATTGCTAGAGCTTTGTCAATGTC 57.442 39.130 2.72 0.00 42.66 3.06
2331 2333 4.006780 TGCTAGAGCTTTGTCAATGTCA 57.993 40.909 2.72 0.00 42.66 3.58
2332 2334 4.388485 TGCTAGAGCTTTGTCAATGTCAA 58.612 39.130 2.72 0.00 42.66 3.18
2333 2335 4.453478 TGCTAGAGCTTTGTCAATGTCAAG 59.547 41.667 2.72 0.00 42.66 3.02
2334 2336 4.453819 GCTAGAGCTTTGTCAATGTCAAGT 59.546 41.667 0.00 0.00 38.21 3.16
2335 2337 5.639506 GCTAGAGCTTTGTCAATGTCAAGTA 59.360 40.000 0.00 0.00 38.21 2.24
2336 2338 6.314896 GCTAGAGCTTTGTCAATGTCAAGTAT 59.685 38.462 0.00 0.00 38.21 2.12
2337 2339 6.734104 AGAGCTTTGTCAATGTCAAGTATC 57.266 37.500 0.00 0.00 0.00 2.24
2338 2340 6.471146 AGAGCTTTGTCAATGTCAAGTATCT 58.529 36.000 0.00 0.00 0.00 1.98
2339 2341 6.593382 AGAGCTTTGTCAATGTCAAGTATCTC 59.407 38.462 0.00 0.88 0.00 2.75
2340 2342 6.471146 AGCTTTGTCAATGTCAAGTATCTCT 58.529 36.000 0.92 0.00 0.00 3.10
2341 2343 6.939163 AGCTTTGTCAATGTCAAGTATCTCTT 59.061 34.615 0.92 0.00 36.75 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.378547 AGCTTGAAAGGGTAATGGTCCA 59.621 45.455 0.00 0.00 0.00 4.02
96 97 1.423395 GCCAGAAGCGAGGAATATCG 58.577 55.000 0.00 0.00 45.48 2.92
111 112 4.207891 AGGTAAGAGTTACATGTGCCAG 57.792 45.455 9.11 0.00 37.88 4.85
156 157 9.983024 TCCATAGGTTGATAAAATAGGTTTTCA 57.017 29.630 0.00 0.00 38.44 2.69
189 190 3.071457 TGCTCCAAAGACTCTGTCATTGA 59.929 43.478 14.60 3.71 41.76 2.57
195 196 3.571401 CCAATTTGCTCCAAAGACTCTGT 59.429 43.478 0.00 0.00 36.76 3.41
206 207 3.766051 AGAATCCTGAACCAATTTGCTCC 59.234 43.478 0.00 0.00 0.00 4.70
285 286 1.821061 CGGTCAGTCTTGAGCCACCT 61.821 60.000 1.63 0.00 46.56 4.00
315 316 7.797121 TGAATATGGCTCAATATAGACTGGA 57.203 36.000 0.00 0.00 0.00 3.86
349 350 1.962807 TGTGTGAGGCCAAATTTCCTG 59.037 47.619 5.01 0.00 31.71 3.86
353 354 5.337491 GGATACATTGTGTGAGGCCAAATTT 60.337 40.000 5.01 0.00 0.00 1.82
438 439 8.492673 TTTCTCTCATCTGTTTAATACGCAAT 57.507 30.769 0.00 0.00 0.00 3.56
525 526 2.028112 AGAGAAAGCCATGCGTGAACTA 60.028 45.455 7.72 0.00 0.00 2.24
554 555 9.965824 CATTTAAGGTCTTTAATTCGGCATTAT 57.034 29.630 0.00 0.00 31.57 1.28
635 636 1.480954 TCTCACTCCGGTAATTGCTCC 59.519 52.381 0.00 0.00 0.00 4.70
636 637 2.961526 TCTCACTCCGGTAATTGCTC 57.038 50.000 0.00 0.00 0.00 4.26
637 638 3.600388 CTTTCTCACTCCGGTAATTGCT 58.400 45.455 0.00 0.00 0.00 3.91
638 639 2.678336 CCTTTCTCACTCCGGTAATTGC 59.322 50.000 0.00 0.00 0.00 3.56
639 640 3.939066 ACCTTTCTCACTCCGGTAATTG 58.061 45.455 0.00 0.00 0.00 2.32
640 641 5.021458 TCTACCTTTCTCACTCCGGTAATT 58.979 41.667 0.00 0.00 30.51 1.40
641 642 4.607239 TCTACCTTTCTCACTCCGGTAAT 58.393 43.478 0.00 0.00 30.51 1.89
642 643 4.038271 TCTACCTTTCTCACTCCGGTAA 57.962 45.455 0.00 0.00 30.51 2.85
643 644 3.726557 TCTACCTTTCTCACTCCGGTA 57.273 47.619 0.00 0.00 0.00 4.02
644 645 2.599408 TCTACCTTTCTCACTCCGGT 57.401 50.000 0.00 0.00 0.00 5.28
645 646 3.510360 TCTTTCTACCTTTCTCACTCCGG 59.490 47.826 0.00 0.00 0.00 5.14
646 647 4.785511 TCTTTCTACCTTTCTCACTCCG 57.214 45.455 0.00 0.00 0.00 4.63
647 648 4.932799 GCTTCTTTCTACCTTTCTCACTCC 59.067 45.833 0.00 0.00 0.00 3.85
648 649 5.542779 TGCTTCTTTCTACCTTTCTCACTC 58.457 41.667 0.00 0.00 0.00 3.51
649 650 5.552870 TGCTTCTTTCTACCTTTCTCACT 57.447 39.130 0.00 0.00 0.00 3.41
650 651 6.428159 TGATTGCTTCTTTCTACCTTTCTCAC 59.572 38.462 0.00 0.00 0.00 3.51
651 652 6.428159 GTGATTGCTTCTTTCTACCTTTCTCA 59.572 38.462 0.00 0.00 0.00 3.27
652 653 6.401581 CGTGATTGCTTCTTTCTACCTTTCTC 60.402 42.308 0.00 0.00 0.00 2.87
653 654 5.409826 CGTGATTGCTTCTTTCTACCTTTCT 59.590 40.000 0.00 0.00 0.00 2.52
654 655 5.408604 TCGTGATTGCTTCTTTCTACCTTTC 59.591 40.000 0.00 0.00 0.00 2.62
655 656 5.305585 TCGTGATTGCTTCTTTCTACCTTT 58.694 37.500 0.00 0.00 0.00 3.11
656 657 4.894784 TCGTGATTGCTTCTTTCTACCTT 58.105 39.130 0.00 0.00 0.00 3.50
657 658 4.537135 TCGTGATTGCTTCTTTCTACCT 57.463 40.909 0.00 0.00 0.00 3.08
658 659 5.607119 TTTCGTGATTGCTTCTTTCTACC 57.393 39.130 0.00 0.00 0.00 3.18
659 660 5.082723 GCTTTCGTGATTGCTTCTTTCTAC 58.917 41.667 0.00 0.00 0.00 2.59
660 661 4.997395 AGCTTTCGTGATTGCTTCTTTCTA 59.003 37.500 0.00 0.00 30.96 2.10
661 662 3.817647 AGCTTTCGTGATTGCTTCTTTCT 59.182 39.130 0.00 0.00 30.96 2.52
662 663 4.152607 AGCTTTCGTGATTGCTTCTTTC 57.847 40.909 0.00 0.00 30.96 2.62
663 664 4.757149 ACTAGCTTTCGTGATTGCTTCTTT 59.243 37.500 0.00 0.00 37.02 2.52
664 665 4.153117 CACTAGCTTTCGTGATTGCTTCTT 59.847 41.667 0.00 0.00 37.02 2.52
739 740 7.027760 CCTCGTTTTCTATTCCTTTTAAAGCC 58.972 38.462 0.00 0.00 0.00 4.35
779 780 2.994699 CGTAATGCCCACCCCTGA 59.005 61.111 0.00 0.00 0.00 3.86
780 781 2.828549 GCGTAATGCCCACCCCTG 60.829 66.667 0.00 0.00 37.76 4.45
823 824 4.120589 GTTCAAACAGGTTCTCGAGAAGT 58.879 43.478 27.70 18.89 34.27 3.01
826 827 3.812156 TGTTCAAACAGGTTCTCGAGA 57.188 42.857 12.08 12.08 34.30 4.04
891 892 5.717119 AGCTGTGGATTGAAAAATCATCAC 58.283 37.500 0.00 2.08 0.00 3.06
898 899 6.819284 AGAAAATGAGCTGTGGATTGAAAAA 58.181 32.000 0.00 0.00 0.00 1.94
1122 1123 4.082523 GTAGCAGCTCCGGCACCA 62.083 66.667 0.00 0.00 41.70 4.17
1198 1199 1.714899 GATGGATTTCGTGCACCGGG 61.715 60.000 12.15 0.00 37.11 5.73
1202 1203 5.284139 AGCCAATGATGGATTTCGTGCAC 62.284 47.826 6.82 6.82 44.90 4.57
1203 1204 3.206624 AGCCAATGATGGATTTCGTGCA 61.207 45.455 0.00 0.00 44.90 4.57
1206 1207 4.704540 TGTTTAGCCAATGATGGATTTCGT 59.295 37.500 0.00 0.00 44.90 3.85
1303 1304 4.512944 CGATTGGAAAACGGATGAGATCAT 59.487 41.667 0.00 0.00 38.53 2.45
1313 1314 4.920927 ACTTTTTATGCGATTGGAAAACGG 59.079 37.500 0.00 0.00 42.73 4.44
1322 1323 7.558161 TGATCTCATGACTTTTTATGCGATT 57.442 32.000 0.00 0.00 31.11 3.34
1385 1386 5.112686 AGAACAAGAGAACGAGATATTGGC 58.887 41.667 0.00 0.00 0.00 4.52
1386 1387 8.703604 TTAAGAACAAGAGAACGAGATATTGG 57.296 34.615 0.00 0.00 0.00 3.16
1436 1438 9.537192 AAAATGCAATATGTTCATACTTGATGG 57.463 29.630 0.00 0.00 36.08 3.51
1491 1493 5.875224 TGAGGACACAGAAATAAATGGACA 58.125 37.500 0.00 0.00 0.00 4.02
1566 1568 4.786425 AGGAAATCCACCAATAAGAGAGC 58.214 43.478 1.67 0.00 38.89 4.09
1610 1612 4.406003 GGATCCTAGTACTCAAAAGGCTGA 59.594 45.833 3.84 0.00 0.00 4.26
1659 1661 2.289945 GCTGCCCAAGGATATGGTCTAG 60.290 54.545 0.00 0.00 38.91 2.43
1660 1662 1.699634 GCTGCCCAAGGATATGGTCTA 59.300 52.381 0.00 0.00 38.91 2.59
1857 1859 2.093553 CCCCCACAAAATAGTTGCCATG 60.094 50.000 0.00 0.00 0.00 3.66
1910 1912 3.433740 CCCTCAAGTGGAGTATTTAGGGC 60.434 52.174 0.00 0.00 42.40 5.19
2007 2009 4.437682 CCTCTAGGGCATATTTCCAACA 57.562 45.455 0.00 0.00 0.00 3.33
2078 2080 8.758829 TCCGGATAATACAGTTATAGCATGAAT 58.241 33.333 0.00 0.00 0.00 2.57
2079 2081 8.129496 TCCGGATAATACAGTTATAGCATGAA 57.871 34.615 0.00 0.00 0.00 2.57
2080 2082 7.712204 TCCGGATAATACAGTTATAGCATGA 57.288 36.000 0.00 0.00 0.00 3.07
2081 2083 8.771920 TTTCCGGATAATACAGTTATAGCATG 57.228 34.615 4.15 0.00 0.00 4.06
2082 2084 9.601217 GATTTCCGGATAATACAGTTATAGCAT 57.399 33.333 4.15 0.00 0.00 3.79
2083 2085 7.758076 CGATTTCCGGATAATACAGTTATAGCA 59.242 37.037 4.15 0.00 33.91 3.49
2084 2086 7.758528 ACGATTTCCGGATAATACAGTTATAGC 59.241 37.037 4.15 0.00 43.93 2.97
2089 2091 9.415544 GTATTACGATTTCCGGATAATACAGTT 57.584 33.333 26.02 11.20 39.68 3.16
2090 2092 8.579006 TGTATTACGATTTCCGGATAATACAGT 58.421 33.333 28.04 20.31 41.92 3.55
2091 2093 8.857216 GTGTATTACGATTTCCGGATAATACAG 58.143 37.037 30.32 18.57 44.29 2.74
2092 2094 8.746922 GTGTATTACGATTTCCGGATAATACA 57.253 34.615 28.04 28.04 43.07 2.29
2109 2111 7.970061 TGGTCTAAGTATTCACACGTGTATTAC 59.030 37.037 22.90 20.63 0.00 1.89
2110 2112 7.970061 GTGGTCTAAGTATTCACACGTGTATTA 59.030 37.037 22.90 9.93 0.00 0.98
2111 2113 6.810182 GTGGTCTAAGTATTCACACGTGTATT 59.190 38.462 22.90 11.42 0.00 1.89
2112 2114 6.071784 TGTGGTCTAAGTATTCACACGTGTAT 60.072 38.462 22.90 14.96 34.01 2.29
2113 2115 5.241285 TGTGGTCTAAGTATTCACACGTGTA 59.759 40.000 22.90 7.35 34.01 2.90
2114 2116 4.038282 TGTGGTCTAAGTATTCACACGTGT 59.962 41.667 17.22 17.22 34.01 4.49
2115 2117 4.552355 TGTGGTCTAAGTATTCACACGTG 58.448 43.478 15.48 15.48 34.01 4.49
2116 2118 4.859304 TGTGGTCTAAGTATTCACACGT 57.141 40.909 0.00 0.00 34.01 4.49
2117 2119 7.491372 ACATATTGTGGTCTAAGTATTCACACG 59.509 37.037 0.00 0.00 37.96 4.49
2118 2120 8.718102 ACATATTGTGGTCTAAGTATTCACAC 57.282 34.615 0.00 0.00 37.96 3.82
2119 2121 7.985184 GGACATATTGTGGTCTAAGTATTCACA 59.015 37.037 0.00 0.00 36.68 3.58
2120 2122 7.441458 GGGACATATTGTGGTCTAAGTATTCAC 59.559 40.741 0.00 0.00 34.49 3.18
2121 2123 7.347222 AGGGACATATTGTGGTCTAAGTATTCA 59.653 37.037 0.00 0.00 34.49 2.57
2122 2124 7.657761 CAGGGACATATTGTGGTCTAAGTATTC 59.342 40.741 0.00 0.00 34.49 1.75
2123 2125 7.420214 CCAGGGACATATTGTGGTCTAAGTATT 60.420 40.741 0.00 0.00 34.49 1.89
2124 2126 6.043243 CCAGGGACATATTGTGGTCTAAGTAT 59.957 42.308 0.00 0.00 34.49 2.12
2125 2127 5.365605 CCAGGGACATATTGTGGTCTAAGTA 59.634 44.000 0.00 0.00 34.49 2.24
2126 2128 4.164221 CCAGGGACATATTGTGGTCTAAGT 59.836 45.833 0.00 0.00 34.49 2.24
2127 2129 4.164221 ACCAGGGACATATTGTGGTCTAAG 59.836 45.833 0.00 0.00 36.82 2.18
2128 2130 4.108570 ACCAGGGACATATTGTGGTCTAA 58.891 43.478 0.00 0.00 36.82 2.10
2129 2131 3.731431 ACCAGGGACATATTGTGGTCTA 58.269 45.455 0.00 0.00 36.82 2.59
2130 2132 2.562296 ACCAGGGACATATTGTGGTCT 58.438 47.619 0.00 0.00 36.82 3.85
2131 2133 4.451900 CTTACCAGGGACATATTGTGGTC 58.548 47.826 0.00 0.00 40.74 4.02
2132 2134 3.371595 GCTTACCAGGGACATATTGTGGT 60.372 47.826 0.00 0.00 43.93 4.16
2133 2135 3.214328 GCTTACCAGGGACATATTGTGG 58.786 50.000 0.00 0.00 0.00 4.17
2134 2136 3.117888 AGGCTTACCAGGGACATATTGTG 60.118 47.826 0.00 0.00 39.06 3.33
2135 2137 3.123273 AGGCTTACCAGGGACATATTGT 58.877 45.455 0.00 0.00 39.06 2.71
2136 2138 3.392616 AGAGGCTTACCAGGGACATATTG 59.607 47.826 0.00 0.00 39.06 1.90
2137 2139 3.669949 AGAGGCTTACCAGGGACATATT 58.330 45.455 0.00 0.00 39.06 1.28
2138 2140 3.352611 AGAGGCTTACCAGGGACATAT 57.647 47.619 0.00 0.00 39.06 1.78
2139 2141 2.868964 AGAGGCTTACCAGGGACATA 57.131 50.000 0.00 0.00 39.06 2.29
2140 2142 2.022918 ACTAGAGGCTTACCAGGGACAT 60.023 50.000 0.00 0.00 39.06 3.06
2141 2143 1.361543 ACTAGAGGCTTACCAGGGACA 59.638 52.381 0.00 0.00 39.06 4.02
2142 2144 2.162264 ACTAGAGGCTTACCAGGGAC 57.838 55.000 0.00 0.00 39.06 4.46
2143 2145 2.043939 TCAACTAGAGGCTTACCAGGGA 59.956 50.000 0.00 0.00 39.06 4.20
2144 2146 2.168728 GTCAACTAGAGGCTTACCAGGG 59.831 54.545 0.00 0.00 39.06 4.45
2145 2147 2.168728 GGTCAACTAGAGGCTTACCAGG 59.831 54.545 0.00 0.00 39.06 4.45
2146 2148 2.832129 TGGTCAACTAGAGGCTTACCAG 59.168 50.000 0.00 0.00 39.06 4.00
2147 2149 2.832129 CTGGTCAACTAGAGGCTTACCA 59.168 50.000 0.00 0.00 39.06 3.25
2148 2150 2.418884 GCTGGTCAACTAGAGGCTTACC 60.419 54.545 0.00 0.00 0.00 2.85
2149 2151 2.498078 AGCTGGTCAACTAGAGGCTTAC 59.502 50.000 0.00 0.00 0.00 2.34
2150 2152 2.821437 AGCTGGTCAACTAGAGGCTTA 58.179 47.619 0.00 0.00 0.00 3.09
2151 2153 1.650528 AGCTGGTCAACTAGAGGCTT 58.349 50.000 0.00 0.00 0.00 4.35
2152 2154 1.277557 CAAGCTGGTCAACTAGAGGCT 59.722 52.381 0.00 0.00 31.83 4.58
2153 2155 1.002544 ACAAGCTGGTCAACTAGAGGC 59.997 52.381 0.00 0.00 0.00 4.70
2154 2156 3.070018 CAACAAGCTGGTCAACTAGAGG 58.930 50.000 0.00 0.00 0.00 3.69
2155 2157 3.496130 CACAACAAGCTGGTCAACTAGAG 59.504 47.826 0.00 0.00 0.00 2.43
2156 2158 3.133901 TCACAACAAGCTGGTCAACTAGA 59.866 43.478 0.00 0.00 0.00 2.43
2157 2159 3.466836 TCACAACAAGCTGGTCAACTAG 58.533 45.455 0.00 0.00 0.00 2.57
2158 2160 3.552132 TCACAACAAGCTGGTCAACTA 57.448 42.857 0.00 0.00 0.00 2.24
2159 2161 2.418368 TCACAACAAGCTGGTCAACT 57.582 45.000 0.00 0.00 0.00 3.16
2160 2162 2.618241 TGATCACAACAAGCTGGTCAAC 59.382 45.455 0.00 0.00 0.00 3.18
2161 2163 2.929641 TGATCACAACAAGCTGGTCAA 58.070 42.857 0.00 0.00 0.00 3.18
2162 2164 2.636647 TGATCACAACAAGCTGGTCA 57.363 45.000 0.00 0.00 0.00 4.02
2173 2175 6.053632 ACCATGACTATCTGTTGATCACAA 57.946 37.500 0.00 0.00 33.87 3.33
2174 2176 5.682234 ACCATGACTATCTGTTGATCACA 57.318 39.130 0.00 0.00 34.32 3.58
2175 2177 6.037610 GGAAACCATGACTATCTGTTGATCAC 59.962 42.308 0.00 0.00 34.32 3.06
2176 2178 6.070021 AGGAAACCATGACTATCTGTTGATCA 60.070 38.462 0.00 0.00 34.32 2.92
2177 2179 6.259608 CAGGAAACCATGACTATCTGTTGATC 59.740 42.308 0.00 0.00 34.32 2.92
2178 2180 6.070021 TCAGGAAACCATGACTATCTGTTGAT 60.070 38.462 0.00 0.00 36.74 2.57
2179 2181 5.248248 TCAGGAAACCATGACTATCTGTTGA 59.752 40.000 0.00 0.00 0.00 3.18
2180 2182 5.352569 GTCAGGAAACCATGACTATCTGTTG 59.647 44.000 0.00 0.00 42.06 3.33
2181 2183 5.491982 GTCAGGAAACCATGACTATCTGTT 58.508 41.667 0.00 0.00 42.06 3.16
2182 2184 5.091261 GTCAGGAAACCATGACTATCTGT 57.909 43.478 0.00 0.00 42.06 3.41
2189 2191 4.192317 GTCCATAGTCAGGAAACCATGAC 58.808 47.826 0.00 2.44 44.97 3.06
2190 2192 3.843619 TGTCCATAGTCAGGAAACCATGA 59.156 43.478 0.00 0.00 36.80 3.07
2191 2193 4.220693 TGTCCATAGTCAGGAAACCATG 57.779 45.455 0.00 0.00 36.80 3.66
2192 2194 5.195940 CAATGTCCATAGTCAGGAAACCAT 58.804 41.667 0.00 0.00 36.80 3.55
2193 2195 4.567537 CCAATGTCCATAGTCAGGAAACCA 60.568 45.833 0.00 0.00 36.80 3.67
2194 2196 3.947834 CCAATGTCCATAGTCAGGAAACC 59.052 47.826 0.00 0.00 36.80 3.27
2195 2197 4.843728 TCCAATGTCCATAGTCAGGAAAC 58.156 43.478 0.00 0.00 36.80 2.78
2196 2198 5.044919 ACATCCAATGTCCATAGTCAGGAAA 60.045 40.000 0.00 0.00 39.92 3.13
2197 2199 4.474651 ACATCCAATGTCCATAGTCAGGAA 59.525 41.667 0.00 0.00 39.92 3.36
2198 2200 4.040047 ACATCCAATGTCCATAGTCAGGA 58.960 43.478 0.00 0.00 39.92 3.86
2199 2201 4.428294 ACATCCAATGTCCATAGTCAGG 57.572 45.455 0.00 0.00 39.92 3.86
2222 2224 6.147821 CCTAATGATGTGATCCCGTTATCAAC 59.852 42.308 0.00 0.00 37.61 3.18
2223 2225 6.042666 TCCTAATGATGTGATCCCGTTATCAA 59.957 38.462 0.00 0.00 37.61 2.57
2224 2226 5.542251 TCCTAATGATGTGATCCCGTTATCA 59.458 40.000 0.00 0.00 33.48 2.15
2225 2227 6.037786 TCCTAATGATGTGATCCCGTTATC 57.962 41.667 0.00 0.00 0.00 1.75
2226 2228 5.780282 TCTCCTAATGATGTGATCCCGTTAT 59.220 40.000 0.00 0.00 0.00 1.89
2227 2229 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
2228 2230 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
2229 2231 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
2230 2232 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
2231 2233 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
2239 2241 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
2240 2242 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
2241 2243 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
2242 2244 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
2243 2245 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
2244 2246 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
2245 2247 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
2246 2248 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
2247 2249 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
2248 2250 4.521146 GGTCTTGTCCATCACATCATTCT 58.479 43.478 0.00 0.00 33.90 2.40
2249 2251 3.629398 GGGTCTTGTCCATCACATCATTC 59.371 47.826 0.00 0.00 33.90 2.67
2250 2252 3.010472 TGGGTCTTGTCCATCACATCATT 59.990 43.478 0.00 0.00 33.90 2.57
2251 2253 2.577563 TGGGTCTTGTCCATCACATCAT 59.422 45.455 0.00 0.00 33.90 2.45
2252 2254 1.984424 TGGGTCTTGTCCATCACATCA 59.016 47.619 0.00 0.00 33.90 3.07
2253 2255 2.787473 TGGGTCTTGTCCATCACATC 57.213 50.000 0.00 0.00 33.90 3.06
2254 2256 3.624777 GATTGGGTCTTGTCCATCACAT 58.375 45.455 0.00 0.00 33.90 3.21
2255 2257 2.290896 GGATTGGGTCTTGTCCATCACA 60.291 50.000 0.00 0.00 33.82 3.58
2256 2258 2.025887 AGGATTGGGTCTTGTCCATCAC 60.026 50.000 0.00 0.00 33.82 3.06
2257 2259 2.278245 AGGATTGGGTCTTGTCCATCA 58.722 47.619 0.00 0.00 33.82 3.07
2258 2260 4.455606 CTTAGGATTGGGTCTTGTCCATC 58.544 47.826 0.00 0.00 33.82 3.51
2259 2261 3.372025 GCTTAGGATTGGGTCTTGTCCAT 60.372 47.826 0.00 0.00 33.82 3.41
2260 2262 2.026262 GCTTAGGATTGGGTCTTGTCCA 60.026 50.000 0.00 0.00 33.12 4.02
2261 2263 2.026262 TGCTTAGGATTGGGTCTTGTCC 60.026 50.000 0.00 0.00 0.00 4.02
2262 2264 3.350219 TGCTTAGGATTGGGTCTTGTC 57.650 47.619 0.00 0.00 0.00 3.18
2263 2265 4.687219 GCTATGCTTAGGATTGGGTCTTGT 60.687 45.833 8.57 0.00 0.00 3.16
2264 2266 3.817647 GCTATGCTTAGGATTGGGTCTTG 59.182 47.826 8.57 0.00 0.00 3.02
2265 2267 3.459598 TGCTATGCTTAGGATTGGGTCTT 59.540 43.478 8.57 0.00 0.00 3.01
2266 2268 3.048600 TGCTATGCTTAGGATTGGGTCT 58.951 45.455 8.57 0.00 0.00 3.85
2267 2269 3.492102 TGCTATGCTTAGGATTGGGTC 57.508 47.619 8.57 0.00 0.00 4.46
2268 2270 5.582950 TTATGCTATGCTTAGGATTGGGT 57.417 39.130 16.94 0.00 37.61 4.51
2269 2271 6.716628 TCTTTTATGCTATGCTTAGGATTGGG 59.283 38.462 16.94 7.48 37.61 4.12
2270 2272 7.750229 TCTTTTATGCTATGCTTAGGATTGG 57.250 36.000 16.94 7.21 37.61 3.16
2271 2273 8.173775 CGATCTTTTATGCTATGCTTAGGATTG 58.826 37.037 16.94 6.01 37.61 2.67
2272 2274 7.880195 ACGATCTTTTATGCTATGCTTAGGATT 59.120 33.333 16.94 0.62 37.61 3.01
2273 2275 7.332926 CACGATCTTTTATGCTATGCTTAGGAT 59.667 37.037 16.16 16.16 39.53 3.24
2274 2276 6.646653 CACGATCTTTTATGCTATGCTTAGGA 59.353 38.462 8.57 6.06 0.00 2.94
2275 2277 6.425114 ACACGATCTTTTATGCTATGCTTAGG 59.575 38.462 8.57 0.00 0.00 2.69
2276 2278 7.413475 ACACGATCTTTTATGCTATGCTTAG 57.587 36.000 2.28 2.28 0.00 2.18
2277 2279 8.141909 ACTACACGATCTTTTATGCTATGCTTA 58.858 33.333 0.00 0.00 0.00 3.09
2278 2280 6.986817 ACTACACGATCTTTTATGCTATGCTT 59.013 34.615 0.00 0.00 0.00 3.91
2279 2281 6.516718 ACTACACGATCTTTTATGCTATGCT 58.483 36.000 0.00 0.00 0.00 3.79
2280 2282 6.771188 ACTACACGATCTTTTATGCTATGC 57.229 37.500 0.00 0.00 0.00 3.14
2281 2283 7.167635 ACGAACTACACGATCTTTTATGCTATG 59.832 37.037 0.00 0.00 34.70 2.23
2282 2284 7.201145 ACGAACTACACGATCTTTTATGCTAT 58.799 34.615 0.00 0.00 34.70 2.97
2283 2285 6.558009 ACGAACTACACGATCTTTTATGCTA 58.442 36.000 0.00 0.00 34.70 3.49
2284 2286 5.408356 ACGAACTACACGATCTTTTATGCT 58.592 37.500 0.00 0.00 34.70 3.79
2285 2287 5.697848 ACGAACTACACGATCTTTTATGC 57.302 39.130 0.00 0.00 34.70 3.14
2286 2288 7.787935 GCAATACGAACTACACGATCTTTTATG 59.212 37.037 0.00 0.00 34.70 1.90
2287 2289 7.705325 AGCAATACGAACTACACGATCTTTTAT 59.295 33.333 0.00 0.00 34.70 1.40
2288 2290 7.031372 AGCAATACGAACTACACGATCTTTTA 58.969 34.615 0.00 0.00 34.70 1.52
2289 2291 5.867716 AGCAATACGAACTACACGATCTTTT 59.132 36.000 0.00 0.00 34.70 2.27
2290 2292 5.408356 AGCAATACGAACTACACGATCTTT 58.592 37.500 0.00 0.00 34.70 2.52
2291 2293 4.995124 AGCAATACGAACTACACGATCTT 58.005 39.130 0.00 0.00 34.70 2.40
2292 2294 4.634184 AGCAATACGAACTACACGATCT 57.366 40.909 0.00 0.00 34.70 2.75
2293 2295 5.745514 TCTAGCAATACGAACTACACGATC 58.254 41.667 0.00 0.00 34.70 3.69
2294 2296 5.746307 TCTAGCAATACGAACTACACGAT 57.254 39.130 0.00 0.00 34.70 3.73
2295 2297 4.495349 GCTCTAGCAATACGAACTACACGA 60.495 45.833 0.00 0.00 41.59 4.35
2296 2298 3.724751 GCTCTAGCAATACGAACTACACG 59.275 47.826 0.00 0.00 41.59 4.49
2297 2299 4.922719 AGCTCTAGCAATACGAACTACAC 58.077 43.478 4.54 0.00 45.16 2.90
2298 2300 5.578005 AAGCTCTAGCAATACGAACTACA 57.422 39.130 4.54 0.00 45.16 2.74
2299 2301 5.805994 ACAAAGCTCTAGCAATACGAACTAC 59.194 40.000 4.54 0.00 45.16 2.73
2300 2302 5.962433 ACAAAGCTCTAGCAATACGAACTA 58.038 37.500 4.54 0.00 45.16 2.24
2301 2303 4.822026 ACAAAGCTCTAGCAATACGAACT 58.178 39.130 4.54 0.00 45.16 3.01
2302 2304 4.625742 TGACAAAGCTCTAGCAATACGAAC 59.374 41.667 4.54 0.00 45.16 3.95
2303 2305 4.816392 TGACAAAGCTCTAGCAATACGAA 58.184 39.130 4.54 0.00 45.16 3.85
2304 2306 4.450082 TGACAAAGCTCTAGCAATACGA 57.550 40.909 4.54 0.00 45.16 3.43
2305 2307 5.063944 ACATTGACAAAGCTCTAGCAATACG 59.936 40.000 4.54 0.00 45.16 3.06
2306 2308 6.092670 TGACATTGACAAAGCTCTAGCAATAC 59.907 38.462 4.54 0.00 45.16 1.89
2307 2309 6.172630 TGACATTGACAAAGCTCTAGCAATA 58.827 36.000 4.54 0.00 45.16 1.90
2308 2310 5.005740 TGACATTGACAAAGCTCTAGCAAT 58.994 37.500 4.54 0.00 45.16 3.56
2309 2311 4.388485 TGACATTGACAAAGCTCTAGCAA 58.612 39.130 4.54 0.00 45.16 3.91
2310 2312 4.006780 TGACATTGACAAAGCTCTAGCA 57.993 40.909 4.54 0.00 45.16 3.49
2311 2313 4.453819 ACTTGACATTGACAAAGCTCTAGC 59.546 41.667 3.32 0.00 42.49 3.42
2312 2314 7.763528 AGATACTTGACATTGACAAAGCTCTAG 59.236 37.037 3.32 0.00 0.00 2.43
2313 2315 7.615403 AGATACTTGACATTGACAAAGCTCTA 58.385 34.615 3.32 0.00 0.00 2.43
2314 2316 6.471146 AGATACTTGACATTGACAAAGCTCT 58.529 36.000 3.32 3.11 0.00 4.09
2315 2317 6.593382 AGAGATACTTGACATTGACAAAGCTC 59.407 38.462 9.35 9.35 0.00 4.09
2316 2318 6.471146 AGAGATACTTGACATTGACAAAGCT 58.529 36.000 3.32 0.00 0.00 3.74
2317 2319 6.734104 AGAGATACTTGACATTGACAAAGC 57.266 37.500 3.32 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.