Multiple sequence alignment - TraesCS2B01G264600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G264600 chr2B 100.000 2246 0 0 1 2246 357263017 357265262 0.000000e+00 4148
1 TraesCS2B01G264600 chr2B 97.300 889 22 1 1360 2246 357618070 357618958 0.000000e+00 1507
2 TraesCS2B01G264600 chrUn 98.119 957 18 0 387 1343 206783240 206784196 0.000000e+00 1668
3 TraesCS2B01G264600 chrUn 97.910 957 20 0 387 1343 345390058 345389102 0.000000e+00 1657
4 TraesCS2B01G264600 chrUn 98.196 388 7 0 1 388 434461156 434461543 0.000000e+00 678
5 TraesCS2B01G264600 chr4D 98.015 957 19 0 387 1343 123320067 123321023 0.000000e+00 1663
6 TraesCS2B01G264600 chr7A 97.910 957 20 0 387 1343 60263895 60264851 0.000000e+00 1657
7 TraesCS2B01G264600 chr7A 97.232 831 17 3 1422 2246 211300321 211299491 0.000000e+00 1402
8 TraesCS2B01G264600 chr7A 98.210 391 7 0 1 391 60272958 60272568 0.000000e+00 684
9 TraesCS2B01G264600 chr7A 98.196 388 7 0 1 388 120847507 120847894 0.000000e+00 678
10 TraesCS2B01G264600 chr6D 97.910 957 20 0 387 1343 124502118 124503074 0.000000e+00 1657
11 TraesCS2B01G264600 chr6D 97.954 391 8 0 1 391 124511179 124510789 0.000000e+00 678
12 TraesCS2B01G264600 chr1B 97.910 957 20 0 387 1343 672569508 672568552 0.000000e+00 1657
13 TraesCS2B01G264600 chr3B 97.806 957 21 0 387 1343 483385298 483386254 0.000000e+00 1652
14 TraesCS2B01G264600 chr3B 98.088 889 15 1 1360 2246 669896691 669895803 0.000000e+00 1546
15 TraesCS2B01G264600 chr3B 97.750 889 18 1 1360 2246 575863588 575864476 0.000000e+00 1530
16 TraesCS2B01G264600 chr3B 100.000 87 0 0 1360 1446 724629955 724629869 6.420000e-36 161
17 TraesCS2B01G264600 chr6B 97.701 957 22 0 387 1343 394458231 394459187 0.000000e+00 1646
18 TraesCS2B01G264600 chr5A 97.597 957 20 3 387 1343 238847967 238847014 0.000000e+00 1637
19 TraesCS2B01G264600 chr5A 97.590 830 15 2 1422 2246 600262470 600261641 0.000000e+00 1417
20 TraesCS2B01G264600 chr7B 97.528 890 19 1 1360 2246 139557860 139556971 0.000000e+00 1519
21 TraesCS2B01G264600 chr7B 98.454 388 6 0 1 388 716846440 716846827 0.000000e+00 684
22 TraesCS2B01G264600 chr7B 97.938 388 8 0 1 388 716885138 716885525 0.000000e+00 673
23 TraesCS2B01G264600 chr2D 97.200 893 18 3 1360 2246 306162603 306163494 0.000000e+00 1504
24 TraesCS2B01G264600 chr5B 96.963 889 25 1 1360 2246 455592347 455591459 0.000000e+00 1491
25 TraesCS2B01G264600 chr5B 96.641 893 24 2 1360 2246 34232379 34233271 0.000000e+00 1478
26 TraesCS2B01G264600 chr7D 98.210 391 7 0 1 391 381913631 381913241 0.000000e+00 684
27 TraesCS2B01G264600 chr7D 98.454 388 6 0 1 388 381980108 381980495 0.000000e+00 684
28 TraesCS2B01G264600 chr7D 97.698 391 9 0 1 391 203493653 203493263 0.000000e+00 673


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G264600 chr2B 357263017 357265262 2245 False 4148 4148 100.000 1 2246 1 chr2B.!!$F1 2245
1 TraesCS2B01G264600 chr2B 357618070 357618958 888 False 1507 1507 97.300 1360 2246 1 chr2B.!!$F2 886
2 TraesCS2B01G264600 chrUn 206783240 206784196 956 False 1668 1668 98.119 387 1343 1 chrUn.!!$F1 956
3 TraesCS2B01G264600 chrUn 345389102 345390058 956 True 1657 1657 97.910 387 1343 1 chrUn.!!$R1 956
4 TraesCS2B01G264600 chr4D 123320067 123321023 956 False 1663 1663 98.015 387 1343 1 chr4D.!!$F1 956
5 TraesCS2B01G264600 chr7A 60263895 60264851 956 False 1657 1657 97.910 387 1343 1 chr7A.!!$F1 956
6 TraesCS2B01G264600 chr7A 211299491 211300321 830 True 1402 1402 97.232 1422 2246 1 chr7A.!!$R2 824
7 TraesCS2B01G264600 chr6D 124502118 124503074 956 False 1657 1657 97.910 387 1343 1 chr6D.!!$F1 956
8 TraesCS2B01G264600 chr1B 672568552 672569508 956 True 1657 1657 97.910 387 1343 1 chr1B.!!$R1 956
9 TraesCS2B01G264600 chr3B 483385298 483386254 956 False 1652 1652 97.806 387 1343 1 chr3B.!!$F1 956
10 TraesCS2B01G264600 chr3B 669895803 669896691 888 True 1546 1546 98.088 1360 2246 1 chr3B.!!$R1 886
11 TraesCS2B01G264600 chr3B 575863588 575864476 888 False 1530 1530 97.750 1360 2246 1 chr3B.!!$F2 886
12 TraesCS2B01G264600 chr6B 394458231 394459187 956 False 1646 1646 97.701 387 1343 1 chr6B.!!$F1 956
13 TraesCS2B01G264600 chr5A 238847014 238847967 953 True 1637 1637 97.597 387 1343 1 chr5A.!!$R1 956
14 TraesCS2B01G264600 chr5A 600261641 600262470 829 True 1417 1417 97.590 1422 2246 1 chr5A.!!$R2 824
15 TraesCS2B01G264600 chr7B 139556971 139557860 889 True 1519 1519 97.528 1360 2246 1 chr7B.!!$R1 886
16 TraesCS2B01G264600 chr2D 306162603 306163494 891 False 1504 1504 97.200 1360 2246 1 chr2D.!!$F1 886
17 TraesCS2B01G264600 chr5B 455591459 455592347 888 True 1491 1491 96.963 1360 2246 1 chr5B.!!$R1 886
18 TraesCS2B01G264600 chr5B 34232379 34233271 892 False 1478 1478 96.641 1360 2246 1 chr5B.!!$F1 886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 301 0.040692 GTCGTCAAAAAGGCCGTTCC 60.041 55.0 3.79 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1357 1358 2.09413 CCGGTCAAAAGAGTCCTCTACC 60.094 54.545 0.0 1.01 39.39 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.895782 TCACTTAAACCACTCCCATATTAGG 58.104 40.000 0.00 0.00 0.00 2.69
25 26 6.445786 TCACTTAAACCACTCCCATATTAGGT 59.554 38.462 0.00 0.00 0.00 3.08
26 27 7.624478 TCACTTAAACCACTCCCATATTAGGTA 59.376 37.037 0.00 0.00 0.00 3.08
27 28 8.437575 CACTTAAACCACTCCCATATTAGGTAT 58.562 37.037 0.00 0.00 0.00 2.73
28 29 9.010767 ACTTAAACCACTCCCATATTAGGTATT 57.989 33.333 0.00 0.00 0.00 1.89
29 30 9.503399 CTTAAACCACTCCCATATTAGGTATTC 57.497 37.037 0.00 0.00 0.00 1.75
30 31 7.707467 AAACCACTCCCATATTAGGTATTCT 57.293 36.000 0.00 0.00 0.00 2.40
31 32 8.808240 AAACCACTCCCATATTAGGTATTCTA 57.192 34.615 0.00 0.00 0.00 2.10
32 33 8.990693 AACCACTCCCATATTAGGTATTCTAT 57.009 34.615 0.00 0.00 0.00 1.98
33 34 8.611051 ACCACTCCCATATTAGGTATTCTATC 57.389 38.462 0.00 0.00 0.00 2.08
34 35 8.410623 ACCACTCCCATATTAGGTATTCTATCT 58.589 37.037 0.00 0.00 0.00 1.98
35 36 8.919145 CCACTCCCATATTAGGTATTCTATCTC 58.081 40.741 0.00 0.00 0.00 2.75
36 37 9.480861 CACTCCCATATTAGGTATTCTATCTCA 57.519 37.037 0.00 0.00 0.00 3.27
52 53 6.769512 TCTATCTCATCTTAAAATTCCCCCG 58.230 40.000 0.00 0.00 0.00 5.73
53 54 4.855298 TCTCATCTTAAAATTCCCCCGT 57.145 40.909 0.00 0.00 0.00 5.28
54 55 5.961398 TCTCATCTTAAAATTCCCCCGTA 57.039 39.130 0.00 0.00 0.00 4.02
55 56 6.509523 TCTCATCTTAAAATTCCCCCGTAT 57.490 37.500 0.00 0.00 0.00 3.06
56 57 6.906848 TCTCATCTTAAAATTCCCCCGTATT 58.093 36.000 0.00 0.00 0.00 1.89
57 58 8.036585 TCTCATCTTAAAATTCCCCCGTATTA 57.963 34.615 0.00 0.00 0.00 0.98
58 59 7.935210 TCTCATCTTAAAATTCCCCCGTATTAC 59.065 37.037 0.00 0.00 0.00 1.89
59 60 6.999871 TCATCTTAAAATTCCCCCGTATTACC 59.000 38.462 0.00 0.00 0.00 2.85
60 61 5.693961 TCTTAAAATTCCCCCGTATTACCC 58.306 41.667 0.00 0.00 0.00 3.69
61 62 5.193325 TCTTAAAATTCCCCCGTATTACCCA 59.807 40.000 0.00 0.00 0.00 4.51
62 63 4.546224 AAAATTCCCCCGTATTACCCAT 57.454 40.909 0.00 0.00 0.00 4.00
63 64 5.666474 AAAATTCCCCCGTATTACCCATA 57.334 39.130 0.00 0.00 0.00 2.74
64 65 5.666474 AAATTCCCCCGTATTACCCATAA 57.334 39.130 0.00 0.00 0.00 1.90
65 66 4.645863 ATTCCCCCGTATTACCCATAAC 57.354 45.455 0.00 0.00 0.00 1.89
66 67 3.349375 TCCCCCGTATTACCCATAACT 57.651 47.619 0.00 0.00 0.00 2.24
67 68 3.667693 TCCCCCGTATTACCCATAACTT 58.332 45.455 0.00 0.00 0.00 2.66
68 69 4.825445 TCCCCCGTATTACCCATAACTTA 58.175 43.478 0.00 0.00 0.00 2.24
69 70 4.592778 TCCCCCGTATTACCCATAACTTAC 59.407 45.833 0.00 0.00 0.00 2.34
70 71 4.263025 CCCCCGTATTACCCATAACTTACC 60.263 50.000 0.00 0.00 0.00 2.85
71 72 4.347583 CCCCGTATTACCCATAACTTACCA 59.652 45.833 0.00 0.00 0.00 3.25
72 73 5.299949 CCCGTATTACCCATAACTTACCAC 58.700 45.833 0.00 0.00 0.00 4.16
73 74 5.299949 CCGTATTACCCATAACTTACCACC 58.700 45.833 0.00 0.00 0.00 4.61
74 75 5.070847 CCGTATTACCCATAACTTACCACCT 59.929 44.000 0.00 0.00 0.00 4.00
75 76 5.987347 CGTATTACCCATAACTTACCACCTG 59.013 44.000 0.00 0.00 0.00 4.00
76 77 6.407299 CGTATTACCCATAACTTACCACCTGT 60.407 42.308 0.00 0.00 0.00 4.00
77 78 7.201902 CGTATTACCCATAACTTACCACCTGTA 60.202 40.741 0.00 0.00 0.00 2.74
78 79 7.701257 ATTACCCATAACTTACCACCTGTAT 57.299 36.000 0.00 0.00 0.00 2.29
79 80 5.625568 ACCCATAACTTACCACCTGTATC 57.374 43.478 0.00 0.00 0.00 2.24
80 81 5.286221 ACCCATAACTTACCACCTGTATCT 58.714 41.667 0.00 0.00 0.00 1.98
81 82 5.365895 ACCCATAACTTACCACCTGTATCTC 59.634 44.000 0.00 0.00 0.00 2.75
82 83 5.221661 CCCATAACTTACCACCTGTATCTCC 60.222 48.000 0.00 0.00 0.00 3.71
83 84 5.509163 CCATAACTTACCACCTGTATCTCCG 60.509 48.000 0.00 0.00 0.00 4.63
84 85 3.377253 ACTTACCACCTGTATCTCCGA 57.623 47.619 0.00 0.00 0.00 4.55
85 86 3.705051 ACTTACCACCTGTATCTCCGAA 58.295 45.455 0.00 0.00 0.00 4.30
86 87 4.091549 ACTTACCACCTGTATCTCCGAAA 58.908 43.478 0.00 0.00 0.00 3.46
87 88 4.081807 ACTTACCACCTGTATCTCCGAAAC 60.082 45.833 0.00 0.00 0.00 2.78
88 89 2.537143 ACCACCTGTATCTCCGAAACT 58.463 47.619 0.00 0.00 0.00 2.66
89 90 2.496470 ACCACCTGTATCTCCGAAACTC 59.504 50.000 0.00 0.00 0.00 3.01
90 91 2.496070 CCACCTGTATCTCCGAAACTCA 59.504 50.000 0.00 0.00 0.00 3.41
91 92 3.056107 CCACCTGTATCTCCGAAACTCAA 60.056 47.826 0.00 0.00 0.00 3.02
92 93 4.562757 CCACCTGTATCTCCGAAACTCAAA 60.563 45.833 0.00 0.00 0.00 2.69
93 94 5.178797 CACCTGTATCTCCGAAACTCAAAT 58.821 41.667 0.00 0.00 0.00 2.32
94 95 5.292101 CACCTGTATCTCCGAAACTCAAATC 59.708 44.000 0.00 0.00 0.00 2.17
95 96 4.504461 CCTGTATCTCCGAAACTCAAATCG 59.496 45.833 0.00 0.00 38.74 3.34
96 97 3.863424 TGTATCTCCGAAACTCAAATCGC 59.137 43.478 0.00 0.00 37.73 4.58
97 98 2.448926 TCTCCGAAACTCAAATCGCA 57.551 45.000 0.00 0.00 37.73 5.10
98 99 2.761559 TCTCCGAAACTCAAATCGCAA 58.238 42.857 0.00 0.00 37.73 4.85
99 100 3.135225 TCTCCGAAACTCAAATCGCAAA 58.865 40.909 0.00 0.00 37.73 3.68
100 101 3.562141 TCTCCGAAACTCAAATCGCAAAA 59.438 39.130 0.00 0.00 37.73 2.44
101 102 4.215399 TCTCCGAAACTCAAATCGCAAAAT 59.785 37.500 0.00 0.00 37.73 1.82
102 103 4.225984 TCCGAAACTCAAATCGCAAAATG 58.774 39.130 0.00 0.00 37.73 2.32
103 104 4.023622 TCCGAAACTCAAATCGCAAAATGA 60.024 37.500 0.00 0.00 37.73 2.57
104 105 4.088496 CCGAAACTCAAATCGCAAAATGAC 59.912 41.667 0.00 0.00 37.73 3.06
105 106 4.674662 CGAAACTCAAATCGCAAAATGACA 59.325 37.500 0.00 0.00 31.71 3.58
106 107 5.172951 CGAAACTCAAATCGCAAAATGACAA 59.827 36.000 0.00 0.00 31.71 3.18
107 108 6.129115 CGAAACTCAAATCGCAAAATGACAAT 60.129 34.615 0.00 0.00 31.71 2.71
108 109 6.456447 AACTCAAATCGCAAAATGACAATG 57.544 33.333 0.00 0.00 0.00 2.82
109 110 4.386652 ACTCAAATCGCAAAATGACAATGC 59.613 37.500 2.17 2.17 36.74 3.56
110 111 4.558178 TCAAATCGCAAAATGACAATGCT 58.442 34.783 8.87 0.00 37.92 3.79
111 112 4.989797 TCAAATCGCAAAATGACAATGCTT 59.010 33.333 8.87 0.00 37.92 3.91
112 113 5.466058 TCAAATCGCAAAATGACAATGCTTT 59.534 32.000 8.87 2.76 37.92 3.51
113 114 5.520022 AATCGCAAAATGACAATGCTTTC 57.480 34.783 8.87 0.00 37.92 2.62
114 115 2.979151 TCGCAAAATGACAATGCTTTCG 59.021 40.909 8.87 0.00 37.92 3.46
115 116 2.979151 CGCAAAATGACAATGCTTTCGA 59.021 40.909 8.87 0.00 37.92 3.71
116 117 3.609373 CGCAAAATGACAATGCTTTCGAT 59.391 39.130 8.87 0.00 37.92 3.59
117 118 4.792702 CGCAAAATGACAATGCTTTCGATA 59.207 37.500 8.87 0.00 37.92 2.92
118 119 5.052829 CGCAAAATGACAATGCTTTCGATAG 60.053 40.000 0.00 0.00 37.92 2.08
119 120 5.801947 GCAAAATGACAATGCTTTCGATAGT 59.198 36.000 4.77 0.00 37.12 2.12
120 121 6.021153 GCAAAATGACAATGCTTTCGATAGTC 60.021 38.462 4.77 0.00 37.12 2.59
121 122 6.992063 AAATGACAATGCTTTCGATAGTCT 57.008 33.333 4.77 0.00 37.40 3.24
122 123 5.980698 ATGACAATGCTTTCGATAGTCTG 57.019 39.130 4.77 2.89 37.40 3.51
123 124 4.820897 TGACAATGCTTTCGATAGTCTGT 58.179 39.130 4.77 5.73 37.40 3.41
124 125 5.961272 TGACAATGCTTTCGATAGTCTGTA 58.039 37.500 4.77 0.00 37.40 2.74
125 126 5.805486 TGACAATGCTTTCGATAGTCTGTAC 59.195 40.000 4.77 0.00 37.40 2.90
126 127 5.967088 ACAATGCTTTCGATAGTCTGTACT 58.033 37.500 4.77 0.00 39.91 2.73
127 128 7.096884 ACAATGCTTTCGATAGTCTGTACTA 57.903 36.000 4.77 0.00 42.35 1.82
128 129 7.544622 ACAATGCTTTCGATAGTCTGTACTAA 58.455 34.615 4.77 0.00 41.49 2.24
129 130 8.033038 ACAATGCTTTCGATAGTCTGTACTAAA 58.967 33.333 4.77 0.00 41.49 1.85
130 131 9.035607 CAATGCTTTCGATAGTCTGTACTAAAT 57.964 33.333 4.77 0.00 41.49 1.40
131 132 9.601217 AATGCTTTCGATAGTCTGTACTAAATT 57.399 29.630 4.77 0.00 41.49 1.82
133 134 9.512435 TGCTTTCGATAGTCTGTACTAAATTAC 57.488 33.333 4.77 0.00 41.49 1.89
134 135 9.733219 GCTTTCGATAGTCTGTACTAAATTACT 57.267 33.333 4.77 0.00 41.49 2.24
146 147 9.685005 CTGTACTAAATTACTTTGTACGAATGC 57.315 33.333 0.00 0.00 34.78 3.56
147 148 9.205719 TGTACTAAATTACTTTGTACGAATGCA 57.794 29.630 0.00 0.00 34.78 3.96
148 149 9.469239 GTACTAAATTACTTTGTACGAATGCAC 57.531 33.333 0.00 0.00 0.00 4.57
149 150 8.090250 ACTAAATTACTTTGTACGAATGCACA 57.910 30.769 0.00 0.00 0.00 4.57
150 151 8.726988 ACTAAATTACTTTGTACGAATGCACAT 58.273 29.630 0.00 0.00 0.00 3.21
151 152 9.210426 CTAAATTACTTTGTACGAATGCACATC 57.790 33.333 0.00 0.00 0.00 3.06
152 153 6.985188 ATTACTTTGTACGAATGCACATCT 57.015 33.333 0.00 0.00 0.00 2.90
153 154 4.928661 ACTTTGTACGAATGCACATCTC 57.071 40.909 0.00 0.00 0.00 2.75
154 155 3.367932 ACTTTGTACGAATGCACATCTCG 59.632 43.478 0.00 0.00 38.53 4.04
155 156 1.921243 TGTACGAATGCACATCTCGG 58.079 50.000 12.26 0.00 36.90 4.63
156 157 0.577269 GTACGAATGCACATCTCGGC 59.423 55.000 12.26 3.57 36.90 5.54
157 158 0.529773 TACGAATGCACATCTCGGCC 60.530 55.000 12.26 0.00 36.90 6.13
158 159 2.874694 CGAATGCACATCTCGGCCG 61.875 63.158 22.12 22.12 0.00 6.13
159 160 1.815421 GAATGCACATCTCGGCCGT 60.815 57.895 27.15 1.97 0.00 5.68
160 161 1.766143 GAATGCACATCTCGGCCGTC 61.766 60.000 27.15 7.22 0.00 4.79
161 162 4.794439 TGCACATCTCGGCCGTCG 62.794 66.667 27.15 17.65 40.90 5.12
163 164 4.873129 CACATCTCGGCCGTCGGG 62.873 72.222 27.15 15.94 41.61 5.14
165 166 3.214123 CATCTCGGCCGTCGGGTA 61.214 66.667 27.15 2.82 40.91 3.69
166 167 2.905880 ATCTCGGCCGTCGGGTAG 60.906 66.667 27.15 14.34 40.91 3.18
171 172 3.537874 GGCCGTCGGGTAGCTGAT 61.538 66.667 14.38 0.00 34.97 2.90
172 173 2.027751 GCCGTCGGGTAGCTGATC 59.972 66.667 14.38 0.43 34.97 2.92
173 174 2.782222 GCCGTCGGGTAGCTGATCA 61.782 63.158 14.38 0.00 34.97 2.92
174 175 1.065928 CCGTCGGGTAGCTGATCAC 59.934 63.158 6.74 0.00 0.00 3.06
175 176 1.065928 CGTCGGGTAGCTGATCACC 59.934 63.158 6.74 0.00 0.00 4.02
176 177 1.663379 CGTCGGGTAGCTGATCACCA 61.663 60.000 6.74 0.00 36.48 4.17
177 178 0.753262 GTCGGGTAGCTGATCACCAT 59.247 55.000 6.74 0.00 36.48 3.55
178 179 1.139058 GTCGGGTAGCTGATCACCATT 59.861 52.381 6.74 0.00 36.48 3.16
179 180 1.837439 TCGGGTAGCTGATCACCATTT 59.163 47.619 5.76 0.00 36.48 2.32
180 181 2.158957 TCGGGTAGCTGATCACCATTTC 60.159 50.000 5.76 0.00 36.48 2.17
181 182 2.419990 CGGGTAGCTGATCACCATTTCA 60.420 50.000 5.76 0.00 36.48 2.69
182 183 3.620488 GGGTAGCTGATCACCATTTCAA 58.380 45.455 5.76 0.00 36.48 2.69
183 184 4.016444 GGGTAGCTGATCACCATTTCAAA 58.984 43.478 5.76 0.00 36.48 2.69
184 185 4.096984 GGGTAGCTGATCACCATTTCAAAG 59.903 45.833 5.76 0.00 36.48 2.77
185 186 4.702131 GGTAGCTGATCACCATTTCAAAGT 59.298 41.667 0.00 0.00 34.77 2.66
186 187 5.163713 GGTAGCTGATCACCATTTCAAAGTC 60.164 44.000 0.00 0.00 34.77 3.01
187 188 4.660168 AGCTGATCACCATTTCAAAGTCT 58.340 39.130 0.00 0.00 0.00 3.24
188 189 5.809001 AGCTGATCACCATTTCAAAGTCTA 58.191 37.500 0.00 0.00 0.00 2.59
189 190 6.421485 AGCTGATCACCATTTCAAAGTCTAT 58.579 36.000 0.00 0.00 0.00 1.98
190 191 7.568349 AGCTGATCACCATTTCAAAGTCTATA 58.432 34.615 0.00 0.00 0.00 1.31
191 192 8.216423 AGCTGATCACCATTTCAAAGTCTATAT 58.784 33.333 0.00 0.00 0.00 0.86
192 193 8.502387 GCTGATCACCATTTCAAAGTCTATATC 58.498 37.037 0.00 0.00 0.00 1.63
193 194 8.908786 TGATCACCATTTCAAAGTCTATATCC 57.091 34.615 0.00 0.00 0.00 2.59
194 195 7.657354 TGATCACCATTTCAAAGTCTATATCCG 59.343 37.037 0.00 0.00 0.00 4.18
195 196 6.884832 TCACCATTTCAAAGTCTATATCCGT 58.115 36.000 0.00 0.00 0.00 4.69
196 197 6.761242 TCACCATTTCAAAGTCTATATCCGTG 59.239 38.462 0.00 0.00 0.00 4.94
197 198 6.017934 CACCATTTCAAAGTCTATATCCGTGG 60.018 42.308 0.00 0.00 0.00 4.94
198 199 6.055588 CCATTTCAAAGTCTATATCCGTGGT 58.944 40.000 0.00 0.00 0.00 4.16
199 200 6.542370 CCATTTCAAAGTCTATATCCGTGGTT 59.458 38.462 0.00 0.00 0.00 3.67
200 201 7.254795 CCATTTCAAAGTCTATATCCGTGGTTC 60.255 40.741 0.00 0.00 0.00 3.62
201 202 5.925506 TCAAAGTCTATATCCGTGGTTCA 57.074 39.130 0.00 0.00 0.00 3.18
202 203 6.288941 TCAAAGTCTATATCCGTGGTTCAA 57.711 37.500 0.00 0.00 0.00 2.69
203 204 6.338146 TCAAAGTCTATATCCGTGGTTCAAG 58.662 40.000 0.00 0.00 0.00 3.02
204 205 6.153851 TCAAAGTCTATATCCGTGGTTCAAGA 59.846 38.462 0.00 0.00 0.00 3.02
205 206 6.540438 AAGTCTATATCCGTGGTTCAAGAA 57.460 37.500 0.00 0.00 0.00 2.52
206 207 6.540438 AGTCTATATCCGTGGTTCAAGAAA 57.460 37.500 0.00 0.00 0.00 2.52
207 208 7.125792 AGTCTATATCCGTGGTTCAAGAAAT 57.874 36.000 0.00 0.00 0.00 2.17
208 209 6.986817 AGTCTATATCCGTGGTTCAAGAAATG 59.013 38.462 0.00 0.00 0.00 2.32
209 210 6.202954 GTCTATATCCGTGGTTCAAGAAATGG 59.797 42.308 0.00 0.00 0.00 3.16
210 211 2.940994 TCCGTGGTTCAAGAAATGGA 57.059 45.000 0.00 0.00 0.00 3.41
211 212 3.216187 TCCGTGGTTCAAGAAATGGAA 57.784 42.857 0.00 0.00 0.00 3.53
212 213 3.761897 TCCGTGGTTCAAGAAATGGAAT 58.238 40.909 0.00 0.00 0.00 3.01
213 214 4.148838 TCCGTGGTTCAAGAAATGGAATT 58.851 39.130 0.00 0.00 38.98 2.17
214 215 4.022416 TCCGTGGTTCAAGAAATGGAATTG 60.022 41.667 0.00 0.00 36.10 2.32
215 216 3.674753 CGTGGTTCAAGAAATGGAATTGC 59.325 43.478 0.00 0.00 36.10 3.56
216 217 4.559300 CGTGGTTCAAGAAATGGAATTGCT 60.559 41.667 0.00 0.00 46.84 3.91
217 218 5.335583 CGTGGTTCAAGAAATGGAATTGCTA 60.336 40.000 0.00 0.00 42.97 3.49
218 219 6.625740 CGTGGTTCAAGAAATGGAATTGCTAT 60.626 38.462 0.00 0.00 42.97 2.97
219 220 7.099120 GTGGTTCAAGAAATGGAATTGCTATT 58.901 34.615 0.00 0.00 42.97 1.73
220 221 7.276438 GTGGTTCAAGAAATGGAATTGCTATTC 59.724 37.037 11.84 11.84 42.97 1.75
221 222 7.178983 TGGTTCAAGAAATGGAATTGCTATTCT 59.821 33.333 18.26 10.47 42.97 2.40
222 223 7.704047 GGTTCAAGAAATGGAATTGCTATTCTC 59.296 37.037 18.26 9.51 42.97 2.87
223 224 7.019774 TCAAGAAATGGAATTGCTATTCTCG 57.980 36.000 18.26 7.31 42.97 4.04
224 225 6.823182 TCAAGAAATGGAATTGCTATTCTCGA 59.177 34.615 18.26 9.04 42.97 4.04
225 226 7.500227 TCAAGAAATGGAATTGCTATTCTCGAT 59.500 33.333 18.26 7.51 42.97 3.59
226 227 7.814264 AGAAATGGAATTGCTATTCTCGATT 57.186 32.000 18.26 11.94 41.59 3.34
227 228 7.869800 AGAAATGGAATTGCTATTCTCGATTC 58.130 34.615 18.26 16.01 41.59 2.52
228 229 7.500227 AGAAATGGAATTGCTATTCTCGATTCA 59.500 33.333 18.26 8.72 41.59 2.57
229 230 6.798315 ATGGAATTGCTATTCTCGATTCAG 57.202 37.500 18.26 0.00 40.07 3.02
230 231 5.917462 TGGAATTGCTATTCTCGATTCAGA 58.083 37.500 18.26 0.00 40.07 3.27
231 232 5.755375 TGGAATTGCTATTCTCGATTCAGAC 59.245 40.000 18.26 1.38 40.07 3.51
232 233 5.755375 GGAATTGCTATTCTCGATTCAGACA 59.245 40.000 18.26 0.00 40.07 3.41
233 234 6.292596 GGAATTGCTATTCTCGATTCAGACAC 60.293 42.308 18.26 0.00 40.07 3.67
234 235 3.695816 TGCTATTCTCGATTCAGACACG 58.304 45.455 0.00 0.00 0.00 4.49
235 236 3.377172 TGCTATTCTCGATTCAGACACGA 59.623 43.478 0.00 0.00 34.90 4.35
236 237 3.726730 GCTATTCTCGATTCAGACACGAC 59.273 47.826 0.00 0.00 32.72 4.34
237 238 3.850122 ATTCTCGATTCAGACACGACA 57.150 42.857 0.00 0.00 32.72 4.35
238 239 2.613730 TCTCGATTCAGACACGACAC 57.386 50.000 0.00 0.00 32.72 3.67
239 240 2.152016 TCTCGATTCAGACACGACACT 58.848 47.619 0.00 0.00 32.72 3.55
240 241 2.095718 TCTCGATTCAGACACGACACTG 60.096 50.000 0.00 0.00 35.72 3.66
241 242 1.877443 TCGATTCAGACACGACACTGA 59.123 47.619 0.00 0.00 40.66 3.41
242 243 2.488153 TCGATTCAGACACGACACTGAT 59.512 45.455 0.00 0.00 41.71 2.90
243 244 3.057526 TCGATTCAGACACGACACTGATT 60.058 43.478 0.00 0.00 41.71 2.57
244 245 3.675225 CGATTCAGACACGACACTGATTT 59.325 43.478 0.00 0.00 41.71 2.17
245 246 4.433413 CGATTCAGACACGACACTGATTTG 60.433 45.833 0.00 0.00 41.71 2.32
246 247 3.452755 TCAGACACGACACTGATTTGT 57.547 42.857 0.00 0.00 38.08 2.83
247 248 3.792401 TCAGACACGACACTGATTTGTT 58.208 40.909 0.00 0.00 38.08 2.83
248 249 4.188462 TCAGACACGACACTGATTTGTTT 58.812 39.130 0.00 0.00 38.08 2.83
249 250 5.353111 TCAGACACGACACTGATTTGTTTA 58.647 37.500 0.00 0.00 38.08 2.01
250 251 5.233476 TCAGACACGACACTGATTTGTTTAC 59.767 40.000 0.00 0.00 38.08 2.01
251 252 4.208460 AGACACGACACTGATTTGTTTACG 59.792 41.667 0.00 0.00 0.00 3.18
252 253 4.114073 ACACGACACTGATTTGTTTACGA 58.886 39.130 0.00 0.00 0.00 3.43
253 254 4.567558 ACACGACACTGATTTGTTTACGAA 59.432 37.500 0.00 0.00 0.00 3.85
254 255 5.063691 ACACGACACTGATTTGTTTACGAAA 59.936 36.000 0.00 0.00 0.00 3.46
255 256 5.391433 CACGACACTGATTTGTTTACGAAAC 59.609 40.000 0.00 0.00 41.73 2.78
256 257 4.601522 CGACACTGATTTGTTTACGAAACG 59.398 41.667 0.00 0.00 44.28 3.60
257 258 4.276460 ACACTGATTTGTTTACGAAACGC 58.724 39.130 0.00 0.00 44.28 4.84
258 259 4.034742 ACACTGATTTGTTTACGAAACGCT 59.965 37.500 0.00 0.00 44.28 5.07
259 260 4.607235 CACTGATTTGTTTACGAAACGCTC 59.393 41.667 0.00 0.00 44.28 5.03
260 261 4.510340 ACTGATTTGTTTACGAAACGCTCT 59.490 37.500 0.00 0.00 44.28 4.09
261 262 5.007332 ACTGATTTGTTTACGAAACGCTCTT 59.993 36.000 0.00 0.00 44.28 2.85
262 263 5.437263 TGATTTGTTTACGAAACGCTCTTC 58.563 37.500 0.00 0.00 44.28 2.87
263 264 4.861389 TTTGTTTACGAAACGCTCTTCA 57.139 36.364 0.00 0.00 44.28 3.02
264 265 5.412526 TTTGTTTACGAAACGCTCTTCAT 57.587 34.783 0.00 0.00 44.28 2.57
265 266 5.412526 TTGTTTACGAAACGCTCTTCATT 57.587 34.783 0.00 0.00 44.28 2.57
266 267 5.412526 TGTTTACGAAACGCTCTTCATTT 57.587 34.783 0.00 0.00 44.28 2.32
267 268 5.812652 TGTTTACGAAACGCTCTTCATTTT 58.187 33.333 0.00 0.00 44.28 1.82
268 269 6.946165 TGTTTACGAAACGCTCTTCATTTTA 58.054 32.000 0.00 0.00 44.28 1.52
269 270 7.577979 TGTTTACGAAACGCTCTTCATTTTAT 58.422 30.769 0.00 0.00 44.28 1.40
270 271 8.710551 TGTTTACGAAACGCTCTTCATTTTATA 58.289 29.630 0.00 0.00 44.28 0.98
271 272 9.195831 GTTTACGAAACGCTCTTCATTTTATAG 57.804 33.333 0.00 0.00 0.00 1.31
272 273 6.345920 ACGAAACGCTCTTCATTTTATAGG 57.654 37.500 0.00 0.00 0.00 2.57
273 274 6.103997 ACGAAACGCTCTTCATTTTATAGGA 58.896 36.000 0.00 0.00 0.00 2.94
274 275 6.761714 ACGAAACGCTCTTCATTTTATAGGAT 59.238 34.615 0.00 0.00 0.00 3.24
275 276 7.042658 ACGAAACGCTCTTCATTTTATAGGATC 60.043 37.037 0.00 0.00 0.00 3.36
276 277 7.169982 CGAAACGCTCTTCATTTTATAGGATCT 59.830 37.037 0.00 0.00 0.00 2.75
277 278 7.954788 AACGCTCTTCATTTTATAGGATCTC 57.045 36.000 0.00 0.00 0.00 2.75
278 279 6.459923 ACGCTCTTCATTTTATAGGATCTCC 58.540 40.000 0.00 0.00 0.00 3.71
279 280 5.872070 CGCTCTTCATTTTATAGGATCTCCC 59.128 44.000 0.00 0.00 36.42 4.30
280 281 6.519043 CGCTCTTCATTTTATAGGATCTCCCA 60.519 42.308 0.00 0.00 37.41 4.37
281 282 6.878389 GCTCTTCATTTTATAGGATCTCCCAG 59.122 42.308 0.00 0.00 37.41 4.45
282 283 7.474079 GCTCTTCATTTTATAGGATCTCCCAGT 60.474 40.741 0.00 0.00 37.41 4.00
283 284 7.967908 TCTTCATTTTATAGGATCTCCCAGTC 58.032 38.462 0.00 0.00 37.41 3.51
284 285 6.346477 TCATTTTATAGGATCTCCCAGTCG 57.654 41.667 0.00 0.00 37.41 4.18
285 286 5.839063 TCATTTTATAGGATCTCCCAGTCGT 59.161 40.000 0.00 0.00 37.41 4.34
286 287 5.786264 TTTTATAGGATCTCCCAGTCGTC 57.214 43.478 0.00 0.00 37.41 4.20
287 288 4.448720 TTATAGGATCTCCCAGTCGTCA 57.551 45.455 0.00 0.00 37.41 4.35
288 289 2.820728 TAGGATCTCCCAGTCGTCAA 57.179 50.000 0.00 0.00 37.41 3.18
289 290 1.938585 AGGATCTCCCAGTCGTCAAA 58.061 50.000 0.00 0.00 37.41 2.69
290 291 2.257207 AGGATCTCCCAGTCGTCAAAA 58.743 47.619 0.00 0.00 37.41 2.44
291 292 2.637872 AGGATCTCCCAGTCGTCAAAAA 59.362 45.455 0.00 0.00 37.41 1.94
292 293 3.003480 GGATCTCCCAGTCGTCAAAAAG 58.997 50.000 0.00 0.00 34.14 2.27
293 294 2.543777 TCTCCCAGTCGTCAAAAAGG 57.456 50.000 0.00 0.00 0.00 3.11
294 295 0.875059 CTCCCAGTCGTCAAAAAGGC 59.125 55.000 0.00 0.00 0.00 4.35
295 296 0.536460 TCCCAGTCGTCAAAAAGGCC 60.536 55.000 0.00 0.00 0.00 5.19
296 297 1.574428 CCAGTCGTCAAAAAGGCCG 59.426 57.895 0.00 0.00 0.00 6.13
297 298 1.164041 CCAGTCGTCAAAAAGGCCGT 61.164 55.000 0.00 0.00 0.00 5.68
298 299 0.661020 CAGTCGTCAAAAAGGCCGTT 59.339 50.000 0.00 0.00 0.00 4.44
299 300 0.942252 AGTCGTCAAAAAGGCCGTTC 59.058 50.000 3.79 0.00 0.00 3.95
300 301 0.040692 GTCGTCAAAAAGGCCGTTCC 60.041 55.000 3.79 0.00 0.00 3.62
312 313 4.848562 AGGCCGTTCCTTCTTTTTAAAG 57.151 40.909 0.00 0.00 44.75 1.85
313 314 4.466827 AGGCCGTTCCTTCTTTTTAAAGA 58.533 39.130 0.00 0.89 44.75 2.52
314 315 4.277672 AGGCCGTTCCTTCTTTTTAAAGAC 59.722 41.667 4.48 0.00 44.75 3.01
315 316 4.543692 GCCGTTCCTTCTTTTTAAAGACC 58.456 43.478 4.48 0.00 44.18 3.85
316 317 4.037089 GCCGTTCCTTCTTTTTAAAGACCA 59.963 41.667 4.48 0.00 44.18 4.02
317 318 5.450826 GCCGTTCCTTCTTTTTAAAGACCAA 60.451 40.000 4.48 0.00 44.18 3.67
318 319 6.737622 GCCGTTCCTTCTTTTTAAAGACCAAT 60.738 38.462 4.48 0.00 44.18 3.16
319 320 6.861572 CCGTTCCTTCTTTTTAAAGACCAATC 59.138 38.462 4.48 0.00 44.18 2.67
320 321 7.422399 CGTTCCTTCTTTTTAAAGACCAATCA 58.578 34.615 4.48 0.00 44.18 2.57
321 322 8.082242 CGTTCCTTCTTTTTAAAGACCAATCAT 58.918 33.333 4.48 0.00 44.18 2.45
322 323 9.764363 GTTCCTTCTTTTTAAAGACCAATCATT 57.236 29.630 4.48 0.00 44.18 2.57
354 355 5.998454 ATGAGATAACAGAAGAAATGGCG 57.002 39.130 0.00 0.00 0.00 5.69
355 356 5.084818 TGAGATAACAGAAGAAATGGCGA 57.915 39.130 0.00 0.00 0.00 5.54
356 357 5.111989 TGAGATAACAGAAGAAATGGCGAG 58.888 41.667 0.00 0.00 0.00 5.03
357 358 3.873952 AGATAACAGAAGAAATGGCGAGC 59.126 43.478 0.00 0.00 0.00 5.03
358 359 2.191128 AACAGAAGAAATGGCGAGCT 57.809 45.000 0.00 0.00 0.00 4.09
359 360 3.334583 AACAGAAGAAATGGCGAGCTA 57.665 42.857 0.00 0.00 0.00 3.32
360 361 3.550437 ACAGAAGAAATGGCGAGCTAT 57.450 42.857 0.00 0.00 0.00 2.97
361 362 3.878778 ACAGAAGAAATGGCGAGCTATT 58.121 40.909 0.70 0.70 0.00 1.73
362 363 4.265073 ACAGAAGAAATGGCGAGCTATTT 58.735 39.130 17.19 17.19 39.30 1.40
363 364 5.428253 ACAGAAGAAATGGCGAGCTATTTA 58.572 37.500 17.19 0.00 37.27 1.40
364 365 5.880332 ACAGAAGAAATGGCGAGCTATTTAA 59.120 36.000 17.19 0.00 37.27 1.52
365 366 6.037610 ACAGAAGAAATGGCGAGCTATTTAAG 59.962 38.462 17.19 9.45 37.27 1.85
366 367 6.258727 CAGAAGAAATGGCGAGCTATTTAAGA 59.741 38.462 17.19 0.00 37.27 2.10
367 368 6.823689 AGAAGAAATGGCGAGCTATTTAAGAA 59.176 34.615 17.19 0.00 37.27 2.52
368 369 6.610741 AGAAATGGCGAGCTATTTAAGAAG 57.389 37.500 17.19 0.00 37.27 2.85
369 370 4.820284 AATGGCGAGCTATTTAAGAAGC 57.180 40.909 0.70 3.55 39.08 3.86
558 559 0.744414 GCCAAAGCCGACTAGCATCA 60.744 55.000 0.00 0.00 34.23 3.07
559 560 1.959042 CCAAAGCCGACTAGCATCAT 58.041 50.000 0.00 0.00 34.23 2.45
614 615 6.861144 TCATTTTGTCTCATGTGTGTTGAAA 58.139 32.000 0.00 0.00 0.00 2.69
632 633 4.714632 TGAAAATTGTCTTCCTCGGTTCT 58.285 39.130 0.00 0.00 0.00 3.01
710 711 2.674754 GGGCCTTCGATTCCACCA 59.325 61.111 0.84 0.00 0.00 4.17
1046 1047 4.352893 ACCTCATAGTTGGGTTGTACCTTT 59.647 41.667 0.00 0.00 38.64 3.11
1079 1080 1.347062 TGTGATGCTGTACCTGGTCA 58.653 50.000 0.63 0.41 0.00 4.02
1173 1174 5.621193 ACTAATCATGCCTTTACGCCTATT 58.379 37.500 0.00 0.00 0.00 1.73
1344 1345 6.764877 CTCAAAAAGCTCTAACACTCGTAA 57.235 37.500 0.00 0.00 0.00 3.18
1345 1346 6.764877 TCAAAAAGCTCTAACACTCGTAAG 57.235 37.500 0.00 0.00 0.00 2.34
1346 1347 5.694910 TCAAAAAGCTCTAACACTCGTAAGG 59.305 40.000 0.00 0.00 38.47 2.69
1347 1348 5.464030 AAAAGCTCTAACACTCGTAAGGA 57.536 39.130 0.00 0.00 38.47 3.36
1348 1349 5.464030 AAAGCTCTAACACTCGTAAGGAA 57.536 39.130 0.00 0.00 38.47 3.36
1349 1350 5.464030 AAGCTCTAACACTCGTAAGGAAA 57.536 39.130 0.00 0.00 38.47 3.13
1350 1351 5.061920 AGCTCTAACACTCGTAAGGAAAG 57.938 43.478 0.00 0.00 38.47 2.62
1351 1352 4.523558 AGCTCTAACACTCGTAAGGAAAGT 59.476 41.667 0.00 0.00 38.47 2.66
1352 1353 5.010820 AGCTCTAACACTCGTAAGGAAAGTT 59.989 40.000 0.00 0.00 38.47 2.66
1353 1354 6.208204 AGCTCTAACACTCGTAAGGAAAGTTA 59.792 38.462 0.00 0.00 38.47 2.24
1354 1355 7.034397 GCTCTAACACTCGTAAGGAAAGTTAT 58.966 38.462 0.00 0.00 38.47 1.89
1355 1356 7.220491 GCTCTAACACTCGTAAGGAAAGTTATC 59.780 40.741 0.00 0.00 38.47 1.75
1356 1357 8.345724 TCTAACACTCGTAAGGAAAGTTATCT 57.654 34.615 0.00 0.00 38.47 1.98
1357 1358 8.242053 TCTAACACTCGTAAGGAAAGTTATCTG 58.758 37.037 0.00 0.00 38.47 2.90
1358 1359 5.721232 ACACTCGTAAGGAAAGTTATCTGG 58.279 41.667 0.00 0.00 38.47 3.86
1655 1656 9.320295 CATAGAGAACCTTAAGAGGATAGGAAT 57.680 37.037 3.36 0.00 46.74 3.01
1722 1723 4.262506 GGGTCAAGACTATAAGGCGCTATT 60.263 45.833 7.64 5.41 0.00 1.73
2151 2159 2.008329 AGAAGAGTGAGTACGCTACCG 58.992 52.381 0.00 0.00 35.81 4.02
2196 2204 7.176690 GAAAGATCTTTTGAAACCATCCTGGTA 59.823 37.037 21.33 0.00 40.66 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.445786 ACCTAATATGGGAGTGGTTTAAGTGA 59.554 38.462 2.45 0.00 0.00 3.41
1 2 6.659824 ACCTAATATGGGAGTGGTTTAAGTG 58.340 40.000 2.45 0.00 0.00 3.16
2 3 6.903340 ACCTAATATGGGAGTGGTTTAAGT 57.097 37.500 2.45 0.00 0.00 2.24
3 4 9.503399 GAATACCTAATATGGGAGTGGTTTAAG 57.497 37.037 2.45 0.00 0.00 1.85
4 5 9.232882 AGAATACCTAATATGGGAGTGGTTTAA 57.767 33.333 2.45 0.00 0.00 1.52
5 6 8.808240 AGAATACCTAATATGGGAGTGGTTTA 57.192 34.615 2.45 0.00 0.00 2.01
6 7 7.707467 AGAATACCTAATATGGGAGTGGTTT 57.293 36.000 2.45 0.00 0.00 3.27
7 8 8.990693 ATAGAATACCTAATATGGGAGTGGTT 57.009 34.615 2.45 0.00 0.00 3.67
8 9 8.410623 AGATAGAATACCTAATATGGGAGTGGT 58.589 37.037 2.45 0.00 0.00 4.16
9 10 8.846423 AGATAGAATACCTAATATGGGAGTGG 57.154 38.462 2.45 0.00 0.00 4.00
10 11 9.480861 TGAGATAGAATACCTAATATGGGAGTG 57.519 37.037 2.45 0.00 0.00 3.51
26 27 7.885399 CGGGGGAATTTTAAGATGAGATAGAAT 59.115 37.037 0.00 0.00 0.00 2.40
27 28 7.147373 ACGGGGGAATTTTAAGATGAGATAGAA 60.147 37.037 0.00 0.00 0.00 2.10
28 29 6.329197 ACGGGGGAATTTTAAGATGAGATAGA 59.671 38.462 0.00 0.00 0.00 1.98
29 30 6.534634 ACGGGGGAATTTTAAGATGAGATAG 58.465 40.000 0.00 0.00 0.00 2.08
30 31 6.509523 ACGGGGGAATTTTAAGATGAGATA 57.490 37.500 0.00 0.00 0.00 1.98
31 32 5.388599 ACGGGGGAATTTTAAGATGAGAT 57.611 39.130 0.00 0.00 0.00 2.75
32 33 4.855298 ACGGGGGAATTTTAAGATGAGA 57.145 40.909 0.00 0.00 0.00 3.27
33 34 7.174426 GGTAATACGGGGGAATTTTAAGATGAG 59.826 40.741 0.00 0.00 0.00 2.90
34 35 6.999871 GGTAATACGGGGGAATTTTAAGATGA 59.000 38.462 0.00 0.00 0.00 2.92
35 36 6.208007 GGGTAATACGGGGGAATTTTAAGATG 59.792 42.308 0.00 0.00 0.00 2.90
36 37 6.126127 TGGGTAATACGGGGGAATTTTAAGAT 60.126 38.462 0.00 0.00 0.00 2.40
37 38 5.193325 TGGGTAATACGGGGGAATTTTAAGA 59.807 40.000 0.00 0.00 0.00 2.10
38 39 5.447757 TGGGTAATACGGGGGAATTTTAAG 58.552 41.667 0.00 0.00 0.00 1.85
39 40 5.463051 TGGGTAATACGGGGGAATTTTAA 57.537 39.130 0.00 0.00 0.00 1.52
40 41 5.666474 ATGGGTAATACGGGGGAATTTTA 57.334 39.130 0.00 0.00 0.00 1.52
41 42 4.546224 ATGGGTAATACGGGGGAATTTT 57.454 40.909 0.00 0.00 0.00 1.82
42 43 5.134850 AGTTATGGGTAATACGGGGGAATTT 59.865 40.000 0.00 0.00 0.00 1.82
43 44 4.666431 AGTTATGGGTAATACGGGGGAATT 59.334 41.667 0.00 0.00 0.00 2.17
44 45 4.245308 AGTTATGGGTAATACGGGGGAAT 58.755 43.478 0.00 0.00 0.00 3.01
45 46 3.667693 AGTTATGGGTAATACGGGGGAA 58.332 45.455 0.00 0.00 0.00 3.97
46 47 3.349375 AGTTATGGGTAATACGGGGGA 57.651 47.619 0.00 0.00 0.00 4.81
47 48 4.263025 GGTAAGTTATGGGTAATACGGGGG 60.263 50.000 0.00 0.00 0.00 5.40
48 49 4.347583 TGGTAAGTTATGGGTAATACGGGG 59.652 45.833 0.00 0.00 0.00 5.73
49 50 5.299949 GTGGTAAGTTATGGGTAATACGGG 58.700 45.833 0.00 0.00 0.00 5.28
50 51 5.070847 AGGTGGTAAGTTATGGGTAATACGG 59.929 44.000 0.00 0.00 0.00 4.02
51 52 5.987347 CAGGTGGTAAGTTATGGGTAATACG 59.013 44.000 0.00 0.00 0.00 3.06
52 53 6.892485 ACAGGTGGTAAGTTATGGGTAATAC 58.108 40.000 0.00 0.00 0.00 1.89
53 54 8.802057 ATACAGGTGGTAAGTTATGGGTAATA 57.198 34.615 0.00 0.00 35.14 0.98
54 55 7.571357 AGATACAGGTGGTAAGTTATGGGTAAT 59.429 37.037 0.00 0.00 35.14 1.89
55 56 6.904654 AGATACAGGTGGTAAGTTATGGGTAA 59.095 38.462 0.00 0.00 35.14 2.85
56 57 6.446451 AGATACAGGTGGTAAGTTATGGGTA 58.554 40.000 0.00 0.00 35.14 3.69
57 58 5.286221 AGATACAGGTGGTAAGTTATGGGT 58.714 41.667 0.00 0.00 35.14 4.51
58 59 5.221661 GGAGATACAGGTGGTAAGTTATGGG 60.222 48.000 0.00 0.00 35.14 4.00
59 60 5.509163 CGGAGATACAGGTGGTAAGTTATGG 60.509 48.000 0.00 0.00 35.14 2.74
60 61 5.301045 TCGGAGATACAGGTGGTAAGTTATG 59.699 44.000 0.00 0.00 35.14 1.90
61 62 5.452255 TCGGAGATACAGGTGGTAAGTTAT 58.548 41.667 0.00 0.00 35.14 1.89
62 63 4.858850 TCGGAGATACAGGTGGTAAGTTA 58.141 43.478 0.00 0.00 35.14 2.24
63 64 3.705051 TCGGAGATACAGGTGGTAAGTT 58.295 45.455 0.00 0.00 35.14 2.66
64 65 3.377253 TCGGAGATACAGGTGGTAAGT 57.623 47.619 0.00 0.00 35.14 2.24
65 66 4.159879 AGTTTCGGAGATACAGGTGGTAAG 59.840 45.833 0.00 0.00 40.91 2.34
66 67 4.091549 AGTTTCGGAGATACAGGTGGTAA 58.908 43.478 0.00 0.00 40.91 2.85
67 68 3.698040 GAGTTTCGGAGATACAGGTGGTA 59.302 47.826 0.00 0.00 40.91 3.25
68 69 2.496470 GAGTTTCGGAGATACAGGTGGT 59.504 50.000 0.00 0.00 40.91 4.16
69 70 2.496070 TGAGTTTCGGAGATACAGGTGG 59.504 50.000 0.00 0.00 40.91 4.61
70 71 3.868757 TGAGTTTCGGAGATACAGGTG 57.131 47.619 0.00 0.00 40.91 4.00
71 72 4.884668 TTTGAGTTTCGGAGATACAGGT 57.115 40.909 0.00 0.00 40.91 4.00
72 73 4.504461 CGATTTGAGTTTCGGAGATACAGG 59.496 45.833 0.00 0.00 40.91 4.00
73 74 4.026475 GCGATTTGAGTTTCGGAGATACAG 60.026 45.833 0.00 0.00 40.91 2.74
74 75 3.863424 GCGATTTGAGTTTCGGAGATACA 59.137 43.478 0.00 0.00 40.91 2.29
75 76 3.863424 TGCGATTTGAGTTTCGGAGATAC 59.137 43.478 0.00 0.00 38.76 2.24
76 77 4.118093 TGCGATTTGAGTTTCGGAGATA 57.882 40.909 0.00 0.00 35.04 1.98
77 78 2.972625 TGCGATTTGAGTTTCGGAGAT 58.027 42.857 0.00 0.00 35.04 2.75
78 79 2.448926 TGCGATTTGAGTTTCGGAGA 57.551 45.000 0.00 0.00 35.93 3.71
79 80 3.536158 TTTGCGATTTGAGTTTCGGAG 57.464 42.857 0.00 0.00 37.03 4.63
80 81 3.972950 TTTTGCGATTTGAGTTTCGGA 57.027 38.095 0.00 0.00 35.93 4.55
81 82 4.088496 GTCATTTTGCGATTTGAGTTTCGG 59.912 41.667 0.00 0.00 35.93 4.30
82 83 4.674662 TGTCATTTTGCGATTTGAGTTTCG 59.325 37.500 0.00 0.00 38.37 3.46
83 84 6.509317 TTGTCATTTTGCGATTTGAGTTTC 57.491 33.333 0.00 0.00 0.00 2.78
84 85 6.564499 GCATTGTCATTTTGCGATTTGAGTTT 60.564 34.615 0.00 0.00 0.00 2.66
85 86 5.107375 GCATTGTCATTTTGCGATTTGAGTT 60.107 36.000 0.00 0.00 0.00 3.01
86 87 4.386652 GCATTGTCATTTTGCGATTTGAGT 59.613 37.500 0.00 0.00 0.00 3.41
87 88 4.624024 AGCATTGTCATTTTGCGATTTGAG 59.376 37.500 0.00 0.00 41.22 3.02
88 89 4.558178 AGCATTGTCATTTTGCGATTTGA 58.442 34.783 0.00 0.00 41.22 2.69
89 90 4.914312 AGCATTGTCATTTTGCGATTTG 57.086 36.364 0.00 0.00 41.22 2.32
90 91 5.388682 CGAAAGCATTGTCATTTTGCGATTT 60.389 36.000 0.00 0.00 41.22 2.17
91 92 4.090354 CGAAAGCATTGTCATTTTGCGATT 59.910 37.500 0.00 0.00 41.22 3.34
92 93 3.609373 CGAAAGCATTGTCATTTTGCGAT 59.391 39.130 0.00 0.00 41.22 4.58
93 94 2.979151 CGAAAGCATTGTCATTTTGCGA 59.021 40.909 0.00 0.00 41.22 5.10
94 95 2.979151 TCGAAAGCATTGTCATTTTGCG 59.021 40.909 0.00 0.00 41.22 4.85
95 96 5.801947 ACTATCGAAAGCATTGTCATTTTGC 59.198 36.000 0.00 0.00 36.63 3.68
96 97 7.217636 CAGACTATCGAAAGCATTGTCATTTTG 59.782 37.037 0.00 0.00 31.53 2.44
97 98 7.094634 ACAGACTATCGAAAGCATTGTCATTTT 60.095 33.333 0.00 0.00 31.53 1.82
98 99 6.372659 ACAGACTATCGAAAGCATTGTCATTT 59.627 34.615 0.00 0.00 31.53 2.32
99 100 5.877012 ACAGACTATCGAAAGCATTGTCATT 59.123 36.000 0.00 0.00 31.53 2.57
100 101 5.423015 ACAGACTATCGAAAGCATTGTCAT 58.577 37.500 0.00 0.00 31.53 3.06
101 102 4.820897 ACAGACTATCGAAAGCATTGTCA 58.179 39.130 0.00 0.00 31.53 3.58
102 103 6.037098 AGTACAGACTATCGAAAGCATTGTC 58.963 40.000 0.00 0.00 32.65 3.18
103 104 5.967088 AGTACAGACTATCGAAAGCATTGT 58.033 37.500 0.00 0.00 32.65 2.71
104 105 7.987268 TTAGTACAGACTATCGAAAGCATTG 57.013 36.000 0.00 0.00 37.99 2.82
105 106 9.601217 AATTTAGTACAGACTATCGAAAGCATT 57.399 29.630 0.00 0.00 37.99 3.56
107 108 9.512435 GTAATTTAGTACAGACTATCGAAAGCA 57.488 33.333 0.00 0.00 37.99 3.91
108 109 9.733219 AGTAATTTAGTACAGACTATCGAAAGC 57.267 33.333 0.00 0.00 37.99 3.51
120 121 9.685005 GCATTCGTACAAAGTAATTTAGTACAG 57.315 33.333 18.97 14.37 35.89 2.74
121 122 9.205719 TGCATTCGTACAAAGTAATTTAGTACA 57.794 29.630 18.97 8.60 35.89 2.90
122 123 9.469239 GTGCATTCGTACAAAGTAATTTAGTAC 57.531 33.333 13.55 13.55 33.53 2.73
123 124 9.205719 TGTGCATTCGTACAAAGTAATTTAGTA 57.794 29.630 0.00 0.00 34.53 1.82
124 125 8.090250 TGTGCATTCGTACAAAGTAATTTAGT 57.910 30.769 0.00 0.00 34.53 2.24
125 126 9.210426 GATGTGCATTCGTACAAAGTAATTTAG 57.790 33.333 0.00 0.00 41.34 1.85
126 127 8.941977 AGATGTGCATTCGTACAAAGTAATTTA 58.058 29.630 0.00 0.00 41.34 1.40
127 128 7.816640 AGATGTGCATTCGTACAAAGTAATTT 58.183 30.769 0.00 0.00 41.34 1.82
128 129 7.377766 AGATGTGCATTCGTACAAAGTAATT 57.622 32.000 0.00 0.00 41.34 1.40
129 130 6.237835 CGAGATGTGCATTCGTACAAAGTAAT 60.238 38.462 0.00 0.00 41.34 1.89
130 131 5.061684 CGAGATGTGCATTCGTACAAAGTAA 59.938 40.000 0.00 0.00 41.34 2.24
131 132 4.561213 CGAGATGTGCATTCGTACAAAGTA 59.439 41.667 0.00 0.00 41.34 2.24
132 133 3.367932 CGAGATGTGCATTCGTACAAAGT 59.632 43.478 0.00 0.00 41.34 2.66
133 134 3.242091 CCGAGATGTGCATTCGTACAAAG 60.242 47.826 0.00 0.00 41.34 2.77
134 135 2.670905 CCGAGATGTGCATTCGTACAAA 59.329 45.455 0.00 0.00 41.34 2.83
135 136 2.267426 CCGAGATGTGCATTCGTACAA 58.733 47.619 0.00 0.00 41.34 2.41
136 137 1.921243 CCGAGATGTGCATTCGTACA 58.079 50.000 0.00 0.00 42.26 2.90
137 138 0.577269 GCCGAGATGTGCATTCGTAC 59.423 55.000 0.00 0.00 32.73 3.67
138 139 0.529773 GGCCGAGATGTGCATTCGTA 60.530 55.000 0.00 0.00 32.73 3.43
139 140 1.815421 GGCCGAGATGTGCATTCGT 60.815 57.895 0.00 0.00 32.73 3.85
140 141 2.874694 CGGCCGAGATGTGCATTCG 61.875 63.158 24.07 0.00 0.00 3.34
141 142 1.766143 GACGGCCGAGATGTGCATTC 61.766 60.000 35.90 11.13 0.00 2.67
142 143 1.815421 GACGGCCGAGATGTGCATT 60.815 57.895 35.90 4.22 0.00 3.56
143 144 2.202932 GACGGCCGAGATGTGCAT 60.203 61.111 35.90 5.18 0.00 3.96
144 145 4.794439 CGACGGCCGAGATGTGCA 62.794 66.667 35.90 0.00 41.76 4.57
146 147 4.873129 CCCGACGGCCGAGATGTG 62.873 72.222 35.90 13.72 41.76 3.21
148 149 3.195591 CTACCCGACGGCCGAGATG 62.196 68.421 35.90 19.37 41.76 2.90
149 150 2.905880 CTACCCGACGGCCGAGAT 60.906 66.667 35.90 10.08 41.76 2.75
154 155 3.501458 GATCAGCTACCCGACGGCC 62.501 68.421 8.86 0.00 0.00 6.13
155 156 2.027751 GATCAGCTACCCGACGGC 59.972 66.667 8.86 0.00 0.00 5.68
156 157 1.065928 GTGATCAGCTACCCGACGG 59.934 63.158 6.99 6.99 0.00 4.79
157 158 1.065928 GGTGATCAGCTACCCGACG 59.934 63.158 17.59 0.00 0.00 5.12
158 159 0.753262 ATGGTGATCAGCTACCCGAC 59.247 55.000 24.30 0.00 36.10 4.79
159 160 1.496060 AATGGTGATCAGCTACCCGA 58.504 50.000 24.30 4.69 36.10 5.14
160 161 2.213499 GAAATGGTGATCAGCTACCCG 58.787 52.381 24.30 0.00 36.10 5.28
161 162 3.281727 TGAAATGGTGATCAGCTACCC 57.718 47.619 24.30 9.26 36.10 3.69
162 163 4.702131 ACTTTGAAATGGTGATCAGCTACC 59.298 41.667 24.30 9.64 37.48 3.18
163 164 5.645497 AGACTTTGAAATGGTGATCAGCTAC 59.355 40.000 24.30 13.36 0.00 3.58
164 165 5.809001 AGACTTTGAAATGGTGATCAGCTA 58.191 37.500 24.30 12.12 0.00 3.32
165 166 4.660168 AGACTTTGAAATGGTGATCAGCT 58.340 39.130 24.30 5.65 0.00 4.24
166 167 6.690194 ATAGACTTTGAAATGGTGATCAGC 57.310 37.500 18.01 18.01 0.00 4.26
167 168 8.997323 GGATATAGACTTTGAAATGGTGATCAG 58.003 37.037 0.00 0.00 0.00 2.90
168 169 7.657354 CGGATATAGACTTTGAAATGGTGATCA 59.343 37.037 0.00 0.00 0.00 2.92
169 170 7.657761 ACGGATATAGACTTTGAAATGGTGATC 59.342 37.037 0.00 0.00 0.00 2.92
170 171 7.442364 CACGGATATAGACTTTGAAATGGTGAT 59.558 37.037 0.00 0.00 0.00 3.06
171 172 6.761242 CACGGATATAGACTTTGAAATGGTGA 59.239 38.462 0.00 0.00 0.00 4.02
172 173 6.017934 CCACGGATATAGACTTTGAAATGGTG 60.018 42.308 0.00 0.00 0.00 4.17
173 174 6.055588 CCACGGATATAGACTTTGAAATGGT 58.944 40.000 0.00 0.00 0.00 3.55
174 175 6.055588 ACCACGGATATAGACTTTGAAATGG 58.944 40.000 0.00 0.00 0.00 3.16
175 176 7.279981 TGAACCACGGATATAGACTTTGAAATG 59.720 37.037 0.00 0.00 0.00 2.32
176 177 7.335627 TGAACCACGGATATAGACTTTGAAAT 58.664 34.615 0.00 0.00 0.00 2.17
177 178 6.703319 TGAACCACGGATATAGACTTTGAAA 58.297 36.000 0.00 0.00 0.00 2.69
178 179 6.288941 TGAACCACGGATATAGACTTTGAA 57.711 37.500 0.00 0.00 0.00 2.69
179 180 5.925506 TGAACCACGGATATAGACTTTGA 57.074 39.130 0.00 0.00 0.00 2.69
180 181 6.338146 TCTTGAACCACGGATATAGACTTTG 58.662 40.000 0.00 0.00 0.00 2.77
181 182 6.540438 TCTTGAACCACGGATATAGACTTT 57.460 37.500 0.00 0.00 0.00 2.66
182 183 6.540438 TTCTTGAACCACGGATATAGACTT 57.460 37.500 0.00 0.00 0.00 3.01
183 184 6.540438 TTTCTTGAACCACGGATATAGACT 57.460 37.500 0.00 0.00 0.00 3.24
184 185 6.202954 CCATTTCTTGAACCACGGATATAGAC 59.797 42.308 0.00 0.00 0.00 2.59
185 186 6.099125 TCCATTTCTTGAACCACGGATATAGA 59.901 38.462 0.00 0.00 0.00 1.98
186 187 6.288294 TCCATTTCTTGAACCACGGATATAG 58.712 40.000 0.00 0.00 0.00 1.31
187 188 6.241882 TCCATTTCTTGAACCACGGATATA 57.758 37.500 0.00 0.00 0.00 0.86
188 189 5.110814 TCCATTTCTTGAACCACGGATAT 57.889 39.130 0.00 0.00 0.00 1.63
189 190 4.561500 TCCATTTCTTGAACCACGGATA 57.438 40.909 0.00 0.00 0.00 2.59
190 191 3.433306 TCCATTTCTTGAACCACGGAT 57.567 42.857 0.00 0.00 0.00 4.18
191 192 2.940994 TCCATTTCTTGAACCACGGA 57.059 45.000 0.00 0.00 0.00 4.69
192 193 4.236935 CAATTCCATTTCTTGAACCACGG 58.763 43.478 0.00 0.00 0.00 4.94
193 194 3.674753 GCAATTCCATTTCTTGAACCACG 59.325 43.478 0.00 0.00 0.00 4.94
194 195 4.886579 AGCAATTCCATTTCTTGAACCAC 58.113 39.130 0.00 0.00 0.00 4.16
195 196 6.855763 ATAGCAATTCCATTTCTTGAACCA 57.144 33.333 0.00 0.00 0.00 3.67
196 197 7.550712 AGAATAGCAATTCCATTTCTTGAACC 58.449 34.615 0.00 0.00 42.20 3.62
197 198 7.430502 CGAGAATAGCAATTCCATTTCTTGAAC 59.569 37.037 0.00 0.00 42.20 3.18
198 199 7.336679 TCGAGAATAGCAATTCCATTTCTTGAA 59.663 33.333 0.00 0.00 42.20 2.69
199 200 6.823182 TCGAGAATAGCAATTCCATTTCTTGA 59.177 34.615 0.00 0.00 42.20 3.02
200 201 7.019774 TCGAGAATAGCAATTCCATTTCTTG 57.980 36.000 0.00 0.00 42.20 3.02
201 202 7.814264 ATCGAGAATAGCAATTCCATTTCTT 57.186 32.000 0.00 0.00 42.20 2.52
202 203 7.500227 TGAATCGAGAATAGCAATTCCATTTCT 59.500 33.333 0.00 0.00 42.20 2.52
203 204 7.642669 TGAATCGAGAATAGCAATTCCATTTC 58.357 34.615 0.00 0.00 42.20 2.17
204 205 7.500227 TCTGAATCGAGAATAGCAATTCCATTT 59.500 33.333 0.00 0.00 42.20 2.32
205 206 6.994496 TCTGAATCGAGAATAGCAATTCCATT 59.006 34.615 0.00 0.00 42.20 3.16
206 207 6.426328 GTCTGAATCGAGAATAGCAATTCCAT 59.574 38.462 0.00 0.00 42.20 3.41
207 208 5.755375 GTCTGAATCGAGAATAGCAATTCCA 59.245 40.000 0.00 0.00 42.20 3.53
208 209 5.755375 TGTCTGAATCGAGAATAGCAATTCC 59.245 40.000 0.00 0.00 42.20 3.01
209 210 6.561166 CGTGTCTGAATCGAGAATAGCAATTC 60.561 42.308 0.00 0.00 41.65 2.17
210 211 5.233050 CGTGTCTGAATCGAGAATAGCAATT 59.767 40.000 0.00 0.00 0.00 2.32
211 212 4.742167 CGTGTCTGAATCGAGAATAGCAAT 59.258 41.667 0.00 0.00 0.00 3.56
212 213 4.105486 CGTGTCTGAATCGAGAATAGCAA 58.895 43.478 0.00 0.00 0.00 3.91
213 214 3.377172 TCGTGTCTGAATCGAGAATAGCA 59.623 43.478 0.00 0.00 0.00 3.49
214 215 3.726730 GTCGTGTCTGAATCGAGAATAGC 59.273 47.826 5.85 0.00 34.33 2.97
215 216 4.731000 GTGTCGTGTCTGAATCGAGAATAG 59.269 45.833 5.85 0.00 34.33 1.73
216 217 4.395231 AGTGTCGTGTCTGAATCGAGAATA 59.605 41.667 5.85 0.00 34.33 1.75
217 218 3.191581 AGTGTCGTGTCTGAATCGAGAAT 59.808 43.478 5.85 2.44 34.33 2.40
218 219 2.552743 AGTGTCGTGTCTGAATCGAGAA 59.447 45.455 5.85 0.00 34.33 2.87
219 220 2.095718 CAGTGTCGTGTCTGAATCGAGA 60.096 50.000 5.85 2.95 34.33 4.04
220 221 2.095718 TCAGTGTCGTGTCTGAATCGAG 60.096 50.000 5.85 0.00 37.69 4.04
221 222 1.877443 TCAGTGTCGTGTCTGAATCGA 59.123 47.619 0.00 0.00 37.69 3.59
222 223 2.331809 TCAGTGTCGTGTCTGAATCG 57.668 50.000 0.00 0.00 37.69 3.34
223 224 4.449068 ACAAATCAGTGTCGTGTCTGAATC 59.551 41.667 9.29 0.00 42.67 2.52
224 225 4.380531 ACAAATCAGTGTCGTGTCTGAAT 58.619 39.130 9.29 1.05 42.67 2.57
225 226 3.792401 ACAAATCAGTGTCGTGTCTGAA 58.208 40.909 9.29 0.00 42.67 3.02
226 227 3.452755 ACAAATCAGTGTCGTGTCTGA 57.547 42.857 8.11 8.11 43.38 3.27
227 228 4.536364 AAACAAATCAGTGTCGTGTCTG 57.464 40.909 0.00 0.00 0.00 3.51
228 229 4.208460 CGTAAACAAATCAGTGTCGTGTCT 59.792 41.667 0.00 0.00 0.00 3.41
229 230 4.207635 TCGTAAACAAATCAGTGTCGTGTC 59.792 41.667 0.00 0.00 0.00 3.67
230 231 4.114073 TCGTAAACAAATCAGTGTCGTGT 58.886 39.130 0.00 0.00 0.00 4.49
231 232 4.702247 TCGTAAACAAATCAGTGTCGTG 57.298 40.909 0.00 0.00 0.00 4.35
232 233 5.495502 GTTTCGTAAACAAATCAGTGTCGT 58.504 37.500 5.85 0.00 41.04 4.34
233 234 4.601522 CGTTTCGTAAACAAATCAGTGTCG 59.398 41.667 9.90 0.00 41.44 4.35
234 235 4.374828 GCGTTTCGTAAACAAATCAGTGTC 59.625 41.667 9.90 0.00 41.44 3.67
235 236 4.034742 AGCGTTTCGTAAACAAATCAGTGT 59.965 37.500 9.90 0.00 41.44 3.55
236 237 4.523813 AGCGTTTCGTAAACAAATCAGTG 58.476 39.130 9.90 0.00 41.44 3.66
237 238 4.510340 AGAGCGTTTCGTAAACAAATCAGT 59.490 37.500 9.90 0.00 41.44 3.41
238 239 5.018695 AGAGCGTTTCGTAAACAAATCAG 57.981 39.130 9.90 0.00 41.44 2.90
239 240 5.006844 TGAAGAGCGTTTCGTAAACAAATCA 59.993 36.000 9.90 5.18 41.44 2.57
240 241 5.437263 TGAAGAGCGTTTCGTAAACAAATC 58.563 37.500 9.90 5.49 41.44 2.17
241 242 5.412526 TGAAGAGCGTTTCGTAAACAAAT 57.587 34.783 9.90 0.00 41.44 2.32
242 243 4.861389 TGAAGAGCGTTTCGTAAACAAA 57.139 36.364 9.90 0.00 41.44 2.83
243 244 5.412526 AATGAAGAGCGTTTCGTAAACAA 57.587 34.783 9.90 0.00 41.44 2.83
244 245 5.412526 AAATGAAGAGCGTTTCGTAAACA 57.587 34.783 9.90 0.00 41.44 2.83
245 246 9.195831 CTATAAAATGAAGAGCGTTTCGTAAAC 57.804 33.333 0.00 0.00 34.69 2.01
246 247 8.385111 CCTATAAAATGAAGAGCGTTTCGTAAA 58.615 33.333 0.00 0.00 34.69 2.01
247 248 7.760794 TCCTATAAAATGAAGAGCGTTTCGTAA 59.239 33.333 0.00 0.00 34.69 3.18
248 249 7.259882 TCCTATAAAATGAAGAGCGTTTCGTA 58.740 34.615 0.00 0.00 34.69 3.43
249 250 6.103997 TCCTATAAAATGAAGAGCGTTTCGT 58.896 36.000 0.00 0.00 34.69 3.85
250 251 6.583912 TCCTATAAAATGAAGAGCGTTTCG 57.416 37.500 0.00 0.00 34.69 3.46
251 252 8.371770 AGATCCTATAAAATGAAGAGCGTTTC 57.628 34.615 0.00 0.00 34.69 2.78
252 253 7.442666 GGAGATCCTATAAAATGAAGAGCGTTT 59.557 37.037 0.00 0.00 37.31 3.60
253 254 6.931840 GGAGATCCTATAAAATGAAGAGCGTT 59.068 38.462 0.00 0.00 0.00 4.84
254 255 6.459923 GGAGATCCTATAAAATGAAGAGCGT 58.540 40.000 0.00 0.00 0.00 5.07
255 256 5.872070 GGGAGATCCTATAAAATGAAGAGCG 59.128 44.000 0.00 0.00 35.95 5.03
256 257 6.773638 TGGGAGATCCTATAAAATGAAGAGC 58.226 40.000 0.00 0.00 36.20 4.09
257 258 7.972301 ACTGGGAGATCCTATAAAATGAAGAG 58.028 38.462 0.00 0.00 36.20 2.85
258 259 7.255977 CGACTGGGAGATCCTATAAAATGAAGA 60.256 40.741 0.00 0.00 36.20 2.87
259 260 6.870965 CGACTGGGAGATCCTATAAAATGAAG 59.129 42.308 0.00 0.00 36.20 3.02
260 261 6.326583 ACGACTGGGAGATCCTATAAAATGAA 59.673 38.462 0.00 0.00 36.20 2.57
261 262 5.839063 ACGACTGGGAGATCCTATAAAATGA 59.161 40.000 0.00 0.00 36.20 2.57
262 263 6.102897 ACGACTGGGAGATCCTATAAAATG 57.897 41.667 0.00 0.00 36.20 2.32
263 264 5.839063 TGACGACTGGGAGATCCTATAAAAT 59.161 40.000 0.00 0.00 36.20 1.82
264 265 5.205821 TGACGACTGGGAGATCCTATAAAA 58.794 41.667 0.00 0.00 36.20 1.52
265 266 4.800023 TGACGACTGGGAGATCCTATAAA 58.200 43.478 0.00 0.00 36.20 1.40
266 267 4.448720 TGACGACTGGGAGATCCTATAA 57.551 45.455 0.00 0.00 36.20 0.98
267 268 4.448720 TTGACGACTGGGAGATCCTATA 57.551 45.455 0.00 0.00 36.20 1.31
268 269 3.314307 TTGACGACTGGGAGATCCTAT 57.686 47.619 0.00 0.00 36.20 2.57
269 270 2.820728 TTGACGACTGGGAGATCCTA 57.179 50.000 0.00 0.00 36.20 2.94
270 271 1.938585 TTTGACGACTGGGAGATCCT 58.061 50.000 0.00 0.00 36.20 3.24
271 272 2.762535 TTTTGACGACTGGGAGATCC 57.237 50.000 0.00 0.00 0.00 3.36
272 273 3.003480 CCTTTTTGACGACTGGGAGATC 58.997 50.000 0.00 0.00 0.00 2.75
273 274 2.876079 GCCTTTTTGACGACTGGGAGAT 60.876 50.000 0.00 0.00 0.00 2.75
274 275 1.542547 GCCTTTTTGACGACTGGGAGA 60.543 52.381 0.00 0.00 0.00 3.71
275 276 0.875059 GCCTTTTTGACGACTGGGAG 59.125 55.000 0.00 0.00 0.00 4.30
276 277 0.536460 GGCCTTTTTGACGACTGGGA 60.536 55.000 0.00 0.00 0.00 4.37
277 278 1.852067 CGGCCTTTTTGACGACTGGG 61.852 60.000 0.00 0.00 0.00 4.45
278 279 1.164041 ACGGCCTTTTTGACGACTGG 61.164 55.000 0.00 0.00 0.00 4.00
279 280 0.661020 AACGGCCTTTTTGACGACTG 59.339 50.000 0.00 0.00 0.00 3.51
280 281 0.942252 GAACGGCCTTTTTGACGACT 59.058 50.000 0.00 0.00 0.00 4.18
281 282 0.040692 GGAACGGCCTTTTTGACGAC 60.041 55.000 0.00 0.00 0.00 4.34
282 283 2.323213 GGAACGGCCTTTTTGACGA 58.677 52.632 0.00 0.00 0.00 4.20
283 284 4.935630 GGAACGGCCTTTTTGACG 57.064 55.556 0.00 0.00 0.00 4.35
291 292 4.277672 GTCTTTAAAAAGAAGGAACGGCCT 59.722 41.667 6.72 0.00 45.77 5.19
292 293 4.543692 GTCTTTAAAAAGAAGGAACGGCC 58.456 43.478 6.72 0.00 45.77 6.13
293 294 4.037089 TGGTCTTTAAAAAGAAGGAACGGC 59.963 41.667 6.72 0.00 45.77 5.68
294 295 5.761165 TGGTCTTTAAAAAGAAGGAACGG 57.239 39.130 6.72 0.00 45.77 4.44
295 296 7.422399 TGATTGGTCTTTAAAAAGAAGGAACG 58.578 34.615 6.72 0.00 45.77 3.95
296 297 9.764363 AATGATTGGTCTTTAAAAAGAAGGAAC 57.236 29.630 6.72 0.00 45.77 3.62
328 329 8.562892 CGCCATTTCTTCTGTTATCTCATAAAT 58.437 33.333 0.00 0.00 0.00 1.40
329 330 7.768582 TCGCCATTTCTTCTGTTATCTCATAAA 59.231 33.333 0.00 0.00 0.00 1.40
330 331 7.272244 TCGCCATTTCTTCTGTTATCTCATAA 58.728 34.615 0.00 0.00 0.00 1.90
331 332 6.816136 TCGCCATTTCTTCTGTTATCTCATA 58.184 36.000 0.00 0.00 0.00 2.15
332 333 5.674525 TCGCCATTTCTTCTGTTATCTCAT 58.325 37.500 0.00 0.00 0.00 2.90
333 334 5.084818 TCGCCATTTCTTCTGTTATCTCA 57.915 39.130 0.00 0.00 0.00 3.27
334 335 4.025313 GCTCGCCATTTCTTCTGTTATCTC 60.025 45.833 0.00 0.00 0.00 2.75
335 336 3.873952 GCTCGCCATTTCTTCTGTTATCT 59.126 43.478 0.00 0.00 0.00 1.98
336 337 3.873952 AGCTCGCCATTTCTTCTGTTATC 59.126 43.478 0.00 0.00 0.00 1.75
337 338 3.878778 AGCTCGCCATTTCTTCTGTTAT 58.121 40.909 0.00 0.00 0.00 1.89
338 339 3.334583 AGCTCGCCATTTCTTCTGTTA 57.665 42.857 0.00 0.00 0.00 2.41
339 340 2.191128 AGCTCGCCATTTCTTCTGTT 57.809 45.000 0.00 0.00 0.00 3.16
340 341 3.550437 ATAGCTCGCCATTTCTTCTGT 57.450 42.857 0.00 0.00 0.00 3.41
341 342 4.889832 AAATAGCTCGCCATTTCTTCTG 57.110 40.909 0.00 0.00 0.00 3.02
342 343 6.349300 TCTTAAATAGCTCGCCATTTCTTCT 58.651 36.000 0.00 0.00 0.00 2.85
343 344 6.604735 TCTTAAATAGCTCGCCATTTCTTC 57.395 37.500 0.00 0.00 0.00 2.87
344 345 6.458888 GCTTCTTAAATAGCTCGCCATTTCTT 60.459 38.462 0.00 0.00 34.57 2.52
345 346 5.008118 GCTTCTTAAATAGCTCGCCATTTCT 59.992 40.000 0.00 0.00 34.57 2.52
346 347 5.008118 AGCTTCTTAAATAGCTCGCCATTTC 59.992 40.000 0.00 0.00 44.05 2.17
347 348 4.884164 AGCTTCTTAAATAGCTCGCCATTT 59.116 37.500 0.00 0.00 44.05 2.32
348 349 4.455606 AGCTTCTTAAATAGCTCGCCATT 58.544 39.130 0.00 0.00 44.05 3.16
349 350 4.078639 AGCTTCTTAAATAGCTCGCCAT 57.921 40.909 0.00 0.00 44.05 4.40
350 351 3.543680 AGCTTCTTAAATAGCTCGCCA 57.456 42.857 0.00 0.00 44.05 5.69
351 352 6.546972 AAATAGCTTCTTAAATAGCTCGCC 57.453 37.500 12.77 0.00 44.05 5.54
352 353 8.979574 TCTTAAATAGCTTCTTAAATAGCTCGC 58.020 33.333 12.77 0.00 44.05 5.03
371 372 9.020731 ACCGGAAAGTATTCACATTTCTTAAAT 57.979 29.630 9.46 0.00 37.29 1.40
372 373 8.398878 ACCGGAAAGTATTCACATTTCTTAAA 57.601 30.769 9.46 0.00 37.29 1.52
373 374 7.881232 AGACCGGAAAGTATTCACATTTCTTAA 59.119 33.333 9.46 0.00 37.29 1.85
374 375 7.391620 AGACCGGAAAGTATTCACATTTCTTA 58.608 34.615 9.46 0.00 37.29 2.10
375 376 6.238648 AGACCGGAAAGTATTCACATTTCTT 58.761 36.000 9.46 0.00 37.29 2.52
376 377 5.805728 AGACCGGAAAGTATTCACATTTCT 58.194 37.500 9.46 0.00 37.29 2.52
377 378 6.496338 AAGACCGGAAAGTATTCACATTTC 57.504 37.500 9.46 0.00 37.29 2.17
378 379 6.894339 AAAGACCGGAAAGTATTCACATTT 57.106 33.333 9.46 0.00 37.29 2.32
379 380 6.894339 AAAAGACCGGAAAGTATTCACATT 57.106 33.333 9.46 0.00 37.29 2.71
380 381 6.894339 AAAAAGACCGGAAAGTATTCACAT 57.106 33.333 9.46 0.00 37.29 3.21
558 559 0.958822 GCCAGTTCACCACGGAAAAT 59.041 50.000 0.00 0.00 0.00 1.82
559 560 1.104577 GGCCAGTTCACCACGGAAAA 61.105 55.000 0.00 0.00 0.00 2.29
614 615 3.515901 AGCTAGAACCGAGGAAGACAATT 59.484 43.478 0.00 0.00 0.00 2.32
632 633 4.215908 CCCTACCTACATCAGTGAAGCTA 58.784 47.826 0.00 0.00 0.00 3.32
710 711 3.435313 CCTCTATGAGACCGTAAGACCCT 60.435 52.174 0.00 0.00 43.02 4.34
779 780 3.906720 AAAAGCTCTCCACGCCTATTA 57.093 42.857 0.00 0.00 0.00 0.98
781 782 2.359900 CAAAAAGCTCTCCACGCCTAT 58.640 47.619 0.00 0.00 0.00 2.57
839 840 2.253610 ACTCATAAGGTTGGGTCGACA 58.746 47.619 18.91 0.00 0.00 4.35
879 880 4.816385 TCAAAAGTGAGTGACTGTTCATCC 59.184 41.667 0.00 0.00 34.02 3.51
1046 1047 3.076621 GCATCACATTTGACACCTGAGA 58.923 45.455 0.00 0.00 33.38 3.27
1079 1080 5.131142 ACCGAGATGGAGGTAAGATTTGAAT 59.869 40.000 0.00 0.00 42.00 2.57
1173 1174 3.067601 TCAAAGTCACTGCTTCTACGACA 59.932 43.478 0.00 0.00 0.00 4.35
1231 1232 2.308690 CCCGGTTTAGTTGGTTTGGAA 58.691 47.619 0.00 0.00 0.00 3.53
1337 1338 5.997384 ACCAGATAACTTTCCTTACGAGT 57.003 39.130 0.00 0.00 0.00 4.18
1343 1344 6.265304 AGTCCTCTACCAGATAACTTTCCTT 58.735 40.000 0.00 0.00 0.00 3.36
1344 1345 5.844601 AGTCCTCTACCAGATAACTTTCCT 58.155 41.667 0.00 0.00 0.00 3.36
1345 1346 5.894964 AGAGTCCTCTACCAGATAACTTTCC 59.105 44.000 0.00 0.00 38.35 3.13
1346 1347 7.412853 AAGAGTCCTCTACCAGATAACTTTC 57.587 40.000 0.00 0.00 39.39 2.62
1347 1348 7.800300 AAAGAGTCCTCTACCAGATAACTTT 57.200 36.000 0.00 0.00 39.39 2.66
1348 1349 7.455008 TCAAAAGAGTCCTCTACCAGATAACTT 59.545 37.037 0.00 0.00 39.39 2.66
1349 1350 6.954684 TCAAAAGAGTCCTCTACCAGATAACT 59.045 38.462 0.00 0.00 39.39 2.24
1350 1351 7.036829 GTCAAAAGAGTCCTCTACCAGATAAC 58.963 42.308 0.00 0.00 39.39 1.89
1351 1352 6.154706 GGTCAAAAGAGTCCTCTACCAGATAA 59.845 42.308 8.47 0.00 39.39 1.75
1352 1353 5.657302 GGTCAAAAGAGTCCTCTACCAGATA 59.343 44.000 8.47 0.00 39.39 1.98
1353 1354 4.468153 GGTCAAAAGAGTCCTCTACCAGAT 59.532 45.833 8.47 0.00 39.39 2.90
1354 1355 3.833070 GGTCAAAAGAGTCCTCTACCAGA 59.167 47.826 8.47 0.00 39.39 3.86
1355 1356 3.367498 CGGTCAAAAGAGTCCTCTACCAG 60.367 52.174 12.28 4.27 39.39 4.00
1356 1357 2.561419 CGGTCAAAAGAGTCCTCTACCA 59.439 50.000 12.28 0.00 39.39 3.25
1357 1358 2.094130 CCGGTCAAAAGAGTCCTCTACC 60.094 54.545 0.00 1.01 39.39 3.18
1358 1359 2.561858 ACCGGTCAAAAGAGTCCTCTAC 59.438 50.000 0.00 0.00 39.39 2.59
1655 1656 7.331026 CCTCACTGGTCTCAAATAAATAGACA 58.669 38.462 0.00 0.00 41.15 3.41
1842 1847 6.753744 GTCGTAAATGACCTATTTAGTTCCGT 59.246 38.462 0.00 0.00 40.83 4.69
1985 1990 2.562296 TGGCCAGAGAAGGGAAGTAAT 58.438 47.619 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.