AutoCloner

Multiple sequence alignment - TraesCS2B01G264400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G264400	chr2B	100.000	2234	0	0	1	2234	357228810	357226577	0.000000e+00	4126
1	TraesCS2B01G264400	chr2B	97.695	1562	34	2	1	1561	391144827	391143267	0.000000e+00	2684
2	TraesCS2B01G264400	chr2B	97.455	1572	35	3	1	1567	391225217	391226788	0.000000e+00	2676
3	TraesCS2B01G264400	chr6B	98.408	1570	22	3	1	1567	596601834	596603403	0.000000e+00	2758
4	TraesCS2B01G264400	chrUn	98.343	1569	24	2	1	1567	171008310	171006742	0.000000e+00	2752
5	TraesCS2B01G264400	chrUn	98.243	569	10	0	1666	2234	189407412	189406844	0.000000e+00	996
6	TraesCS2B01G264400	chrUn	98.243	569	10	0	1666	2234	251409183	251409751	0.000000e+00	996
7	TraesCS2B01G264400	chrUn	98.243	569	10	0	1666	2234	360799643	360799075	0.000000e+00	996
8	TraesCS2B01G264400	chr7A	98.089	1570	27	2	1	1567	638507640	638509209	0.000000e+00	2730
9	TraesCS2B01G264400	chr7A	97.834	1570	29	4	1	1567	708245649	708244082	0.000000e+00	2706
10	TraesCS2B01G264400	chr7A	97.980	99	2	0	1567	1665	60089382	60089284	2.950000e-39	172
11	TraesCS2B01G264400	chr7A	97.980	99	2	0	1567	1665	60164321	60164419	2.950000e-39	172
12	TraesCS2B01G264400	chr7A	97.980	99	2	0	1567	1665	708251970	708251872	2.950000e-39	172
13	TraesCS2B01G264400	chr7D	97.833	1569	32	2	1	1567	382089823	382088255	0.000000e+00	2708
14	TraesCS2B01G264400	chr7D	97.891	569	12	0	1666	2234	381958833	381959401	0.000000e+00	985
15	TraesCS2B01G264400	chr7D	96.970	99	3	0	1567	1665	307096309	307096407	1.370000e-37	167
16	TraesCS2B01G264400	chr7D	96.970	99	3	0	1567	1665	578997566	578997664	1.370000e-37	167
17	TraesCS2B01G264400	chr5B	97.772	1571	31	3	1	1567	567280020	567278450	0.000000e+00	2704
18	TraesCS2B01G264400	chr1B	97.768	1568	33	2	1	1567	672541246	672539680	0.000000e+00	2700
19	TraesCS2B01G264400	chr1B	98.236	567	10	0	1666	2232	668808831	668809397	0.000000e+00	992
20	TraesCS2B01G264400	chr1B	97.938	97	2	0	1567	1663	583557122	583557218	3.820000e-38	169
21	TraesCS2B01G264400	chr6D	98.243	569	10	0	1666	2234	124532450	124531882	0.000000e+00	996
22	TraesCS2B01G264400	chr6D	97.891	569	12	0	1666	2234	458913109	458912541	0.000000e+00	985
23	TraesCS2B01G264400	chr1D	98.243	569	10	0	1666	2234	141316807	141317375	0.000000e+00	996
24	TraesCS2B01G264400	chr7B	98.067	569	11	0	1666	2234	644463772	644463204	0.000000e+00	990
25	TraesCS2B01G264400	chr6A	97.980	99	2	0	1567	1665	155850274	155850176	2.950000e-39	172
26	TraesCS2B01G264400	chr5A	97.980	99	2	0	1567	1665	238864947	238864849	2.950000e-39	172
27	TraesCS2B01G264400	chr5A	97.980	99	2	0	1567	1665	420190135	420190037	2.950000e-39	172

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G264400	chr2B	357226577	357228810	2233	True	4126	4126	100.000	1	2234	1	chr2B.!!$R1	2233
1	TraesCS2B01G264400	chr2B	391143267	391144827	1560	True	2684	2684	97.695	1	1561	1	chr2B.!!$R2	1560
2	TraesCS2B01G264400	chr2B	391225217	391226788	1571	False	2676	2676	97.455	1	1567	1	chr2B.!!$F1	1566
3	TraesCS2B01G264400	chr6B	596601834	596603403	1569	False	2758	2758	98.408	1	1567	1	chr6B.!!$F1	1566
4	TraesCS2B01G264400	chrUn	171006742	171008310	1568	True	2752	2752	98.343	1	1567	1	chrUn.!!$R1	1566
5	TraesCS2B01G264400	chrUn	189406844	189407412	568	True	996	996	98.243	1666	2234	1	chrUn.!!$R2	568
6	TraesCS2B01G264400	chrUn	251409183	251409751	568	False	996	996	98.243	1666	2234	1	chrUn.!!$F1	568
7	TraesCS2B01G264400	chrUn	360799075	360799643	568	True	996	996	98.243	1666	2234	1	chrUn.!!$R3	568
8	TraesCS2B01G264400	chr7A	638507640	638509209	1569	False	2730	2730	98.089	1	1567	1	chr7A.!!$F2	1566
9	TraesCS2B01G264400	chr7A	708244082	708245649	1567	True	2706	2706	97.834	1	1567	1	chr7A.!!$R2	1566
10	TraesCS2B01G264400	chr7D	382088255	382089823	1568	True	2708	2708	97.833	1	1567	1	chr7D.!!$R1	1566
11	TraesCS2B01G264400	chr7D	381958833	381959401	568	False	985	985	97.891	1666	2234	1	chr7D.!!$F2	568
12	TraesCS2B01G264400	chr5B	567278450	567280020	1570	True	2704	2704	97.772	1	1567	1	chr5B.!!$R1	1566
13	TraesCS2B01G264400	chr1B	672539680	672541246	1566	True	2700	2700	97.768	1	1567	1	chr1B.!!$R1	1566
14	TraesCS2B01G264400	chr1B	668808831	668809397	566	False	992	992	98.236	1666	2232	1	chr1B.!!$F2	566
15	TraesCS2B01G264400	chr6D	124531882	124532450	568	True	996	996	98.243	1666	2234	1	chr6D.!!$R1	568
16	TraesCS2B01G264400	chr6D	458912541	458913109	568	True	985	985	97.891	1666	2234	1	chr6D.!!$R2	568
17	TraesCS2B01G264400	chr1D	141316807	141317375	568	False	996	996	98.243	1666	2234	1	chr1D.!!$F1	568
18	TraesCS2B01G264400	chr7B	644463204	644463772	568	True	990	990	98.067	1666	2234	1	chr7B.!!$R1	568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
649	653	1.035385	CCCCGCCATTCTTGTAACCC	61.035	60.0	0.0	0.0	0.0	4.11	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1638	1644	0.109532	TTCCGTTGGATTGTGCTCCA	59.89	50.0	0.0	0.0	43.62	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
98	99	2.631160	TTTCTTCTTCCAAGCCGACA	57.369	45.000	0.00	0.00	0.00	4.35
161	162	2.179517	CGTCTTTCTCTCGGCGCT	59.820	61.111	7.64	0.00	0.00	5.92
191	192	2.001361	GACGTGTCCGGGTCGATCAT	62.001	60.000	17.39	0.00	38.78	2.45
216	217	2.759795	GCTTGCTTCTCCCCCACT	59.240	61.111	0.00	0.00	0.00	4.00
225	226	1.381327	CTCCCCCACTCTCGCCTAA	60.381	63.158	0.00	0.00	0.00	2.69
465	469	2.797156	CGTATTTCGCAATAGCAGCTCT	59.203	45.455	0.00	0.00	42.27	4.09
649	653	1.035385	CCCCGCCATTCTTGTAACCC	61.035	60.000	0.00	0.00	0.00	4.11
789	794	7.548097	AGCATTCGGTACATATATAAGTCAGG	58.452	38.462	0.00	0.00	0.00	3.86
872	877	2.357638	TTCGCCGCGGTTCATTGA	60.358	55.556	28.70	12.24	0.00	2.57
914	919	2.543687	CTTCTCCGAAAGCTCCGCGA	62.544	60.000	8.23	0.00	0.00	5.87
1138	1144	3.740397	CGGAGCCGTACGTGGACA	61.740	66.667	15.21	0.00	34.35	4.02
1395	1401	2.125512	CGAGAGCCTCCCGTTTGG	60.126	66.667	0.00	0.00	0.00	3.28
1441	1447	1.064758	AGACAAAAGCAGTCCCACACA	60.065	47.619	0.00	0.00	36.68	3.72
1447	1453	3.290948	AAGCAGTCCCACACAAAACTA	57.709	42.857	0.00	0.00	0.00	2.24
1567	1573	3.827722	AGCGAGCCTCTAAAGACTCTAT	58.172	45.455	0.00	0.00	0.00	1.98
1568	1574	3.568007	AGCGAGCCTCTAAAGACTCTATG	59.432	47.826	0.00	0.00	0.00	2.23
1569	1575	3.305064	GCGAGCCTCTAAAGACTCTATGG	60.305	52.174	0.00	0.00	0.00	2.74
1570	1576	4.138290	CGAGCCTCTAAAGACTCTATGGA	58.862	47.826	0.00	0.00	0.00	3.41
1571	1577	4.215399	CGAGCCTCTAAAGACTCTATGGAG	59.785	50.000	4.25	4.25	44.62	3.86
1581	1587	2.483583	CTCTATGGAGTGACTCGTGC	57.516	55.000	6.50	0.00	35.03	5.34
1582	1588	2.020720	CTCTATGGAGTGACTCGTGCT	58.979	52.381	6.50	0.00	35.03	4.40
1583	1589	2.425312	CTCTATGGAGTGACTCGTGCTT	59.575	50.000	6.50	0.00	35.03	3.91
1584	1590	2.826128	TCTATGGAGTGACTCGTGCTTT	59.174	45.455	6.50	0.00	0.00	3.51
1585	1591	2.086054	ATGGAGTGACTCGTGCTTTC	57.914	50.000	6.50	0.00	0.00	2.62
1586	1592	0.318699	TGGAGTGACTCGTGCTTTCG	60.319	55.000	6.50	0.00	0.00	3.46
1587	1593	0.318784	GGAGTGACTCGTGCTTTCGT	60.319	55.000	6.50	0.00	0.00	3.85
1588	1594	1.068748	GGAGTGACTCGTGCTTTCGTA	60.069	52.381	6.50	0.00	0.00	3.43
1589	1595	1.977412	GAGTGACTCGTGCTTTCGTAC	59.023	52.381	0.00	0.00	0.00	3.67
1590	1596	1.058404	GTGACTCGTGCTTTCGTACC	58.942	55.000	0.00	0.00	0.00	3.34
1591	1597	0.669619	TGACTCGTGCTTTCGTACCA	59.330	50.000	0.00	0.00	0.00	3.25
1592	1598	1.271379	TGACTCGTGCTTTCGTACCAT	59.729	47.619	0.00	0.00	0.00	3.55
1593	1599	2.488937	TGACTCGTGCTTTCGTACCATA	59.511	45.455	0.00	0.00	0.00	2.74
1594	1600	3.057386	TGACTCGTGCTTTCGTACCATAA	60.057	43.478	0.00	0.00	0.00	1.90
1595	1601	3.916761	ACTCGTGCTTTCGTACCATAAA	58.083	40.909	0.00	0.00	0.00	1.40
1596	1602	3.676646	ACTCGTGCTTTCGTACCATAAAC	59.323	43.478	0.00	0.00	0.00	2.01
1597	1603	3.916761	TCGTGCTTTCGTACCATAAACT	58.083	40.909	0.00	0.00	0.00	2.66
1598	1604	5.058149	TCGTGCTTTCGTACCATAAACTA	57.942	39.130	0.00	0.00	0.00	2.24
1599	1605	5.468592	TCGTGCTTTCGTACCATAAACTAA	58.531	37.500	0.00	0.00	0.00	2.24
1600	1606	6.101332	TCGTGCTTTCGTACCATAAACTAAT	58.899	36.000	0.00	0.00	0.00	1.73
1601	1607	6.035220	TCGTGCTTTCGTACCATAAACTAATG	59.965	38.462	0.00	0.00	0.00	1.90
1602	1608	5.963586	GTGCTTTCGTACCATAAACTAATGC	59.036	40.000	0.00	0.00	0.00	3.56
1603	1609	5.065474	TGCTTTCGTACCATAAACTAATGCC	59.935	40.000	0.00	0.00	0.00	4.40
1604	1610	5.721876	TTTCGTACCATAAACTAATGCCG	57.278	39.130	0.00	0.00	0.00	5.69
1605	1611	3.125316	TCGTACCATAAACTAATGCCGC	58.875	45.455	0.00	0.00	0.00	6.53
1606	1612	2.222445	CGTACCATAAACTAATGCCGCC	59.778	50.000	0.00	0.00	0.00	6.13
1607	1613	2.729028	ACCATAAACTAATGCCGCCT	57.271	45.000	0.00	0.00	0.00	5.52
1608	1614	2.572290	ACCATAAACTAATGCCGCCTC	58.428	47.619	0.00	0.00	0.00	4.70
1609	1615	2.172717	ACCATAAACTAATGCCGCCTCT	59.827	45.455	0.00	0.00	0.00	3.69
1610	1616	2.808543	CCATAAACTAATGCCGCCTCTC	59.191	50.000	0.00	0.00	0.00	3.20
1611	1617	2.218953	TAAACTAATGCCGCCTCTCG	57.781	50.000	0.00	0.00	38.08	4.04
1621	1627	4.803426	GCCTCTCGGGAGTGCGTG	62.803	72.222	12.26	0.00	37.86	5.34
1622	1628	3.374402	CCTCTCGGGAGTGCGTGT	61.374	66.667	12.26	0.00	37.86	4.49
1623	1629	2.651361	CTCTCGGGAGTGCGTGTT	59.349	61.111	3.40	0.00	35.03	3.32
1624	1630	1.592400	CCTCTCGGGAGTGCGTGTTA	61.592	60.000	12.26	0.00	37.86	2.41
1625	1631	0.456312	CTCTCGGGAGTGCGTGTTAC	60.456	60.000	3.40	0.00	35.03	2.50
1626	1632	0.892358	TCTCGGGAGTGCGTGTTACT	60.892	55.000	0.00	0.00	0.00	2.24
1627	1633	0.806868	CTCGGGAGTGCGTGTTACTA	59.193	55.000	0.00	0.00	0.00	1.82
1628	1634	1.404391	CTCGGGAGTGCGTGTTACTAT	59.596	52.381	0.00	0.00	0.00	2.12
1629	1635	1.820519	TCGGGAGTGCGTGTTACTATT	59.179	47.619	0.00	0.00	0.00	1.73
1630	1636	2.159338	TCGGGAGTGCGTGTTACTATTC	60.159	50.000	0.00	0.00	0.00	1.75
1631	1637	2.547826	GGGAGTGCGTGTTACTATTCC	58.452	52.381	0.00	0.00	0.00	3.01
1632	1638	2.093869	GGGAGTGCGTGTTACTATTCCA	60.094	50.000	0.00	0.00	0.00	3.53
1633	1639	3.431766	GGGAGTGCGTGTTACTATTCCAT	60.432	47.826	0.00	0.00	0.00	3.41
1634	1640	4.189231	GGAGTGCGTGTTACTATTCCATT	58.811	43.478	0.00	0.00	0.00	3.16
1635	1641	4.270325	GGAGTGCGTGTTACTATTCCATTC	59.730	45.833	0.00	0.00	0.00	2.67
1636	1642	5.086104	AGTGCGTGTTACTATTCCATTCT	57.914	39.130	0.00	0.00	0.00	2.40
1637	1643	5.109903	AGTGCGTGTTACTATTCCATTCTC	58.890	41.667	0.00	0.00	0.00	2.87
1638	1644	5.105310	AGTGCGTGTTACTATTCCATTCTCT	60.105	40.000	0.00	0.00	0.00	3.10
1639	1645	5.005779	GTGCGTGTTACTATTCCATTCTCTG	59.994	44.000	0.00	0.00	0.00	3.35
1655	1661	4.395519	TGGAGCACAATCCAACGG	57.604	55.556	0.00	0.00	46.45	4.44
1656	1662	1.757949	TGGAGCACAATCCAACGGA	59.242	52.632	0.00	0.00	46.45	4.69
1657	1663	0.109532	TGGAGCACAATCCAACGGAA	59.890	50.000	0.00	0.00	46.45	4.30
1658	1664	1.243902	GGAGCACAATCCAACGGAAA	58.756	50.000	0.00	0.00	39.34	3.13
1659	1665	1.611491	GGAGCACAATCCAACGGAAAA	59.389	47.619	0.00	0.00	39.34	2.29
1660	1666	2.035321	GGAGCACAATCCAACGGAAAAA	59.965	45.455	0.00	0.00	39.34	1.94
1677	1683	2.882403	AAAAAGTGGGGCGGGGTTGT	62.882	55.000	0.00	0.00	0.00	3.32
1717	1723	1.497991	GTGCACAAGAGTACTTCGCA	58.502	50.000	13.17	0.00	38.45	5.10
2030	2036	1.474320	CGCATTTTCTACGGGATCCCA	60.474	52.381	30.42	11.27	35.37	4.37
2106	2112	5.163794	CGAGATGCCTACGGTTAAAAACAAT	60.164	40.000	0.00	0.00	0.00	2.71
2191	2197	1.896660	GCGGTCCAACAAAGAGGCA	60.897	57.895	0.00	0.00	0.00	4.75
2207	2213	3.067833	GAGGCAAAGTAGTGGTGTCTTC	58.932	50.000	0.00	0.00	0.00	2.87
2218	2224	5.520748	AGTGGTGTCTTCCTTTCCATTAT	57.479	39.130	0.00	0.00	0.00	1.28

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
161	162	2.546368	CCGGACACGTCAAAAATTCTCA	59.454	45.455	0.00	0.00	38.78	3.27
191	192	0.249398	GGAGAAGCAAGCCGAACCTA	59.751	55.000	0.00	0.00	0.00	3.08
216	217	4.202326	GGGTTATCCATTTCTTAGGCGAGA	60.202	45.833	0.00	0.00	35.00	4.04
225	226	3.026694	GCAGCAAGGGTTATCCATTTCT	58.973	45.455	0.00	0.00	35.40	2.52
465	469	0.547712	ACCCTAAGCCCAGCTTCTCA	60.548	55.000	4.87	0.00	46.77	3.27
610	614	0.886563	AAGTGAAGAGTACCCGACGG	59.113	55.000	6.99	6.99	0.00	4.79
649	653	1.148157	CTGCGCGGATTACAGGTGAG	61.148	60.000	11.90	0.00	0.00	3.51
789	794	1.271434	GGTGACCCTTTGACTCTTCCC	60.271	57.143	0.00	0.00	0.00	3.97
914	919	4.200874	CGAAGACTAGTGATAGGTGGTCT	58.799	47.826	0.00	0.00	35.87	3.85
1088	1094	1.135803	CGGAAATGGCCTTGTTGTACG	60.136	52.381	3.32	0.00	0.00	3.67
1395	1401	2.212900	GTCAAATGCCCCTTGACGGC	62.213	60.000	6.84	0.00	42.25	5.68
1441	1447	6.088137	TCCATTGGGGAAAATTCCTAGTTTT	58.912	36.000	11.75	0.00	44.80	2.43
1567	1573	0.318699	CGAAAGCACGAGTCACTCCA	60.319	55.000	0.00	0.00	35.09	3.86
1568	1574	0.318784	ACGAAAGCACGAGTCACTCC	60.319	55.000	0.00	0.00	37.03	3.85
1569	1575	1.977412	GTACGAAAGCACGAGTCACTC	59.023	52.381	0.00	0.00	37.03	3.51
1570	1576	1.335689	GGTACGAAAGCACGAGTCACT	60.336	52.381	5.12	0.00	37.03	3.41
1571	1577	1.058404	GGTACGAAAGCACGAGTCAC	58.942	55.000	5.12	0.00	37.03	3.67
1572	1578	0.669619	TGGTACGAAAGCACGAGTCA	59.330	50.000	5.12	0.00	37.03	3.41
1573	1579	1.992170	ATGGTACGAAAGCACGAGTC	58.008	50.000	5.12	0.00	38.70	3.36
1574	1580	3.581024	TTATGGTACGAAAGCACGAGT	57.419	42.857	5.12	0.00	38.70	4.18
1575	1581	3.924686	AGTTTATGGTACGAAAGCACGAG	59.075	43.478	5.12	0.00	38.70	4.18
1576	1582	3.916761	AGTTTATGGTACGAAAGCACGA	58.083	40.909	5.12	0.00	38.70	4.35
1577	1583	5.766702	TTAGTTTATGGTACGAAAGCACG	57.233	39.130	0.00	0.00	38.70	5.34
1578	1584	5.963586	GCATTAGTTTATGGTACGAAAGCAC	59.036	40.000	0.00	0.00	38.70	4.40
1579	1585	5.065474	GGCATTAGTTTATGGTACGAAAGCA	59.935	40.000	0.00	0.00	40.55	3.91
1580	1586	5.507974	GGCATTAGTTTATGGTACGAAAGC	58.492	41.667	0.00	0.00	0.00	3.51
1581	1587	5.734311	CGGCATTAGTTTATGGTACGAAAG	58.266	41.667	0.00	0.00	0.00	2.62
1582	1588	4.034279	GCGGCATTAGTTTATGGTACGAAA	59.966	41.667	0.00	0.00	0.00	3.46
1583	1589	3.556775	GCGGCATTAGTTTATGGTACGAA	59.443	43.478	0.00	0.00	0.00	3.85
1584	1590	3.125316	GCGGCATTAGTTTATGGTACGA	58.875	45.455	0.00	0.00	0.00	3.43
1585	1591	2.222445	GGCGGCATTAGTTTATGGTACG	59.778	50.000	3.07	0.00	0.00	3.67
1586	1592	3.473625	AGGCGGCATTAGTTTATGGTAC	58.526	45.455	13.08	0.00	0.00	3.34
1587	1593	3.389983	AGAGGCGGCATTAGTTTATGGTA	59.610	43.478	13.08	0.00	0.00	3.25
1588	1594	2.172717	AGAGGCGGCATTAGTTTATGGT	59.827	45.455	13.08	0.00	0.00	3.55
1589	1595	2.808543	GAGAGGCGGCATTAGTTTATGG	59.191	50.000	13.08	0.00	0.00	2.74
1590	1596	2.476619	CGAGAGGCGGCATTAGTTTATG	59.523	50.000	13.08	0.00	36.03	1.90
1591	1597	2.755650	CGAGAGGCGGCATTAGTTTAT	58.244	47.619	13.08	0.00	36.03	1.40
1592	1598	2.218953	CGAGAGGCGGCATTAGTTTA	57.781	50.000	13.08	0.00	36.03	2.01
1593	1599	3.065575	CGAGAGGCGGCATTAGTTT	57.934	52.632	13.08	0.00	36.03	2.66
1594	1600	4.835927	CGAGAGGCGGCATTAGTT	57.164	55.556	13.08	0.00	36.03	2.24
1606	1612	0.456312	GTAACACGCACTCCCGAGAG	60.456	60.000	0.00	0.00	46.36	3.20
1607	1613	0.892358	AGTAACACGCACTCCCGAGA	60.892	55.000	0.00	0.00	0.00	4.04
1608	1614	0.806868	TAGTAACACGCACTCCCGAG	59.193	55.000	0.00	0.00	0.00	4.63
1609	1615	1.466856	ATAGTAACACGCACTCCCGA	58.533	50.000	0.00	0.00	0.00	5.14
1610	1616	2.190981	GAATAGTAACACGCACTCCCG	58.809	52.381	0.00	0.00	0.00	5.14
1611	1617	2.093869	TGGAATAGTAACACGCACTCCC	60.094	50.000	0.00	0.00	0.00	4.30
1612	1618	3.241067	TGGAATAGTAACACGCACTCC	57.759	47.619	0.00	0.00	0.00	3.85
1613	1619	5.109903	AGAATGGAATAGTAACACGCACTC	58.890	41.667	0.00	0.00	0.00	3.51
1614	1620	5.086104	AGAATGGAATAGTAACACGCACT	57.914	39.130	0.00	0.00	0.00	4.40
1615	1621	5.005779	CAGAGAATGGAATAGTAACACGCAC	59.994	44.000	0.00	0.00	0.00	5.34
1616	1622	5.109210	CAGAGAATGGAATAGTAACACGCA	58.891	41.667	0.00	0.00	0.00	5.24
1617	1623	5.643339	CAGAGAATGGAATAGTAACACGC	57.357	43.478	0.00	0.00	0.00	5.34
1631	1637	2.995283	TGGATTGTGCTCCAGAGAATG	58.005	47.619	0.00	0.00	40.43	2.67
1632	1638	3.350833	GTTGGATTGTGCTCCAGAGAAT	58.649	45.455	0.00	0.00	45.80	2.40
1633	1639	2.783135	GTTGGATTGTGCTCCAGAGAA	58.217	47.619	0.00	0.00	45.80	2.87
1634	1640	1.338105	CGTTGGATTGTGCTCCAGAGA	60.338	52.381	0.00	0.00	45.80	3.10
1635	1641	1.081892	CGTTGGATTGTGCTCCAGAG	58.918	55.000	0.00	0.00	45.80	3.35
1636	1642	0.321564	CCGTTGGATTGTGCTCCAGA	60.322	55.000	0.00	0.00	45.80	3.86
1637	1643	0.321564	TCCGTTGGATTGTGCTCCAG	60.322	55.000	0.00	0.00	45.80	3.86
1638	1644	0.109532	TTCCGTTGGATTGTGCTCCA	59.890	50.000	0.00	0.00	43.62	3.86
1639	1645	1.243902	TTTCCGTTGGATTGTGCTCC	58.756	50.000	0.00	0.00	35.74	4.70
1640	1646	3.363341	TTTTTCCGTTGGATTGTGCTC	57.637	42.857	0.00	0.00	0.00	4.26
1658	1664	2.137528	CAACCCCGCCCCACTTTTT	61.138	57.895	0.00	0.00	0.00	1.94
1659	1665	2.523168	CAACCCCGCCCCACTTTT	60.523	61.111	0.00	0.00	0.00	2.27
1660	1666	3.828023	ACAACCCCGCCCCACTTT	61.828	61.111	0.00	0.00	0.00	2.66
1661	1667	4.596585	CACAACCCCGCCCCACTT	62.597	66.667	0.00	0.00	0.00	3.16
2030	2036	2.123033	GGGGTGGCTGGTGGTTTT	60.123	61.111	0.00	0.00	0.00	2.43
2106	2112	4.329801	CGAATTTGGATCTTGACATGTCGA	59.670	41.667	20.54	17.85	0.00	4.20
2191	2197	4.165372	TGGAAAGGAAGACACCACTACTTT	59.835	41.667	0.00	0.00	33.34	2.66
2207	2213	3.485216	GCGTGTCGTTCATAATGGAAAGG	60.485	47.826	0.00	0.00	0.00	3.11

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.