Multiple sequence alignment - TraesCS2B01G264300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G264300 chr2B 100.000 2246 0 0 1 2246 357205275 357207520 0.000000e+00 4148
1 TraesCS2B01G264300 chr2B 98.136 1073 20 0 502 1574 391092155 391091083 0.000000e+00 1871
2 TraesCS2B01G264300 chrUn 99.068 1073 10 0 502 1574 206783355 206784427 0.000000e+00 1927
3 TraesCS2B01G264300 chrUn 98.695 1073 14 0 502 1574 345389943 345388871 0.000000e+00 1905
4 TraesCS2B01G264300 chrUn 99.096 332 3 0 1 332 86518251 86518582 4.130000e-167 597
5 TraesCS2B01G264300 chrUn 98.795 332 4 0 1 332 206785768 206786099 1.920000e-165 592
6 TraesCS2B01G264300 chr6D 98.882 1073 12 0 502 1574 124502233 124503305 0.000000e+00 1916
7 TraesCS2B01G264300 chr6D 99.096 332 3 0 1 332 124504642 124504973 4.130000e-167 597
8 TraesCS2B01G264300 chr4D 98.882 1073 12 0 502 1574 123320182 123321254 0.000000e+00 1916
9 TraesCS2B01G264300 chr7A 98.695 1073 14 0 502 1574 60264010 60265082 0.000000e+00 1905
10 TraesCS2B01G264300 chr7A 99.096 332 3 0 1 332 60266421 60266752 4.130000e-167 597
11 TraesCS2B01G264300 chr1B 98.695 1073 14 0 502 1574 672569393 672568321 0.000000e+00 1905
12 TraesCS2B01G264300 chr1B 97.774 674 15 0 1573 2246 583603509 583602836 0.000000e+00 1162
13 TraesCS2B01G264300 chr1B 97.626 674 16 0 1573 2246 461455246 461455919 0.000000e+00 1157
14 TraesCS2B01G264300 chr1B 99.398 332 2 0 1 332 672567012 672566681 8.870000e-169 603
15 TraesCS2B01G264300 chr3B 98.509 1073 16 0 502 1574 483385413 483386485 0.000000e+00 1893
16 TraesCS2B01G264300 chr3B 97.033 674 19 1 1573 2246 669854829 669854157 0.000000e+00 1133
17 TraesCS2B01G264300 chr3B 96.736 674 21 1 1573 2246 575869995 575870667 0.000000e+00 1122
18 TraesCS2B01G264300 chr5A 98.322 1073 16 2 502 1574 238847853 238846783 0.000000e+00 1881
19 TraesCS2B01G264300 chr5A 98.071 674 13 0 1573 2246 16594331 16593658 0.000000e+00 1173
20 TraesCS2B01G264300 chr6B 98.071 674 13 0 1573 2246 394408252 394408925 0.000000e+00 1173
21 TraesCS2B01G264300 chr6B 98.071 674 13 0 1573 2246 394517440 394518113 0.000000e+00 1173
22 TraesCS2B01G264300 chr7B 97.329 674 18 0 1573 2246 47129925 47130598 0.000000e+00 1146
23 TraesCS2B01G264300 chr7B 96.736 674 21 1 1573 2246 139551454 139550782 0.000000e+00 1122
24 TraesCS2B01G264300 chr7D 99.096 332 3 0 1 332 203487108 203487439 4.130000e-167 597
25 TraesCS2B01G264300 chr7D 98.795 332 4 0 1 332 381907087 381907418 1.920000e-165 592
26 TraesCS2B01G264300 chr2D 99.096 332 3 0 1 332 39504257 39504588 4.130000e-167 597
27 TraesCS2B01G264300 chr3D 98.795 332 4 0 1 332 6756693 6757024 1.920000e-165 592


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G264300 chr2B 357205275 357207520 2245 False 4148.0 4148 100.0000 1 2246 1 chr2B.!!$F1 2245
1 TraesCS2B01G264300 chr2B 391091083 391092155 1072 True 1871.0 1871 98.1360 502 1574 1 chr2B.!!$R1 1072
2 TraesCS2B01G264300 chrUn 345388871 345389943 1072 True 1905.0 1905 98.6950 502 1574 1 chrUn.!!$R1 1072
3 TraesCS2B01G264300 chrUn 206783355 206786099 2744 False 1259.5 1927 98.9315 1 1574 2 chrUn.!!$F2 1573
4 TraesCS2B01G264300 chr6D 124502233 124504973 2740 False 1256.5 1916 98.9890 1 1574 2 chr6D.!!$F1 1573
5 TraesCS2B01G264300 chr4D 123320182 123321254 1072 False 1916.0 1916 98.8820 502 1574 1 chr4D.!!$F1 1072
6 TraesCS2B01G264300 chr7A 60264010 60266752 2742 False 1251.0 1905 98.8955 1 1574 2 chr7A.!!$F1 1573
7 TraesCS2B01G264300 chr1B 672566681 672569393 2712 True 1254.0 1905 99.0465 1 1574 2 chr1B.!!$R2 1573
8 TraesCS2B01G264300 chr1B 583602836 583603509 673 True 1162.0 1162 97.7740 1573 2246 1 chr1B.!!$R1 673
9 TraesCS2B01G264300 chr1B 461455246 461455919 673 False 1157.0 1157 97.6260 1573 2246 1 chr1B.!!$F1 673
10 TraesCS2B01G264300 chr3B 483385413 483386485 1072 False 1893.0 1893 98.5090 502 1574 1 chr3B.!!$F1 1072
11 TraesCS2B01G264300 chr3B 669854157 669854829 672 True 1133.0 1133 97.0330 1573 2246 1 chr3B.!!$R1 673
12 TraesCS2B01G264300 chr3B 575869995 575870667 672 False 1122.0 1122 96.7360 1573 2246 1 chr3B.!!$F2 673
13 TraesCS2B01G264300 chr5A 238846783 238847853 1070 True 1881.0 1881 98.3220 502 1574 1 chr5A.!!$R2 1072
14 TraesCS2B01G264300 chr5A 16593658 16594331 673 True 1173.0 1173 98.0710 1573 2246 1 chr5A.!!$R1 673
15 TraesCS2B01G264300 chr6B 394408252 394408925 673 False 1173.0 1173 98.0710 1573 2246 1 chr6B.!!$F1 673
16 TraesCS2B01G264300 chr6B 394517440 394518113 673 False 1173.0 1173 98.0710 1573 2246 1 chr6B.!!$F2 673
17 TraesCS2B01G264300 chr7B 47129925 47130598 673 False 1146.0 1146 97.3290 1573 2246 1 chr7B.!!$F1 673
18 TraesCS2B01G264300 chr7B 139550782 139551454 672 True 1122.0 1122 96.7360 1573 2246 1 chr7B.!!$R1 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.108585 ACATGAGCCAGTGAAACGGT 59.891 50.0 0.0 0.0 45.86 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1961 2863 0.174845 CTAAGATTCACCCACCGCGA 59.825 55.0 8.23 0.0 0.0 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.749665 AGAGCCATCTTGCTATGACTC 57.250 47.619 3.57 3.57 42.95 3.36
21 22 3.036819 AGAGCCATCTTGCTATGACTCA 58.963 45.455 11.12 0.00 42.95 3.41
22 23 3.453717 AGAGCCATCTTGCTATGACTCAA 59.546 43.478 11.12 0.00 42.95 3.02
23 24 4.080695 AGAGCCATCTTGCTATGACTCAAA 60.081 41.667 11.12 0.00 42.95 2.69
24 25 4.197750 AGCCATCTTGCTATGACTCAAAG 58.802 43.478 0.00 0.00 40.56 2.77
25 26 4.080695 AGCCATCTTGCTATGACTCAAAGA 60.081 41.667 0.00 0.00 40.56 2.52
26 27 4.820716 GCCATCTTGCTATGACTCAAAGAT 59.179 41.667 0.00 0.00 0.00 2.40
27 28 5.277876 GCCATCTTGCTATGACTCAAAGATG 60.278 44.000 17.34 17.34 33.18 2.90
28 29 5.238868 CCATCTTGCTATGACTCAAAGATGG 59.761 44.000 23.73 23.73 39.12 3.51
29 30 5.426689 TCTTGCTATGACTCAAAGATGGT 57.573 39.130 0.00 0.00 0.00 3.55
30 31 5.423015 TCTTGCTATGACTCAAAGATGGTC 58.577 41.667 0.00 0.00 0.00 4.02
31 32 4.824479 TGCTATGACTCAAAGATGGTCA 57.176 40.909 0.00 0.00 39.45 4.02
32 33 5.164620 TGCTATGACTCAAAGATGGTCAA 57.835 39.130 0.00 0.00 38.97 3.18
33 34 5.559770 TGCTATGACTCAAAGATGGTCAAA 58.440 37.500 0.00 0.00 38.97 2.69
34 35 6.003326 TGCTATGACTCAAAGATGGTCAAAA 58.997 36.000 0.00 0.00 38.97 2.44
35 36 6.489700 TGCTATGACTCAAAGATGGTCAAAAA 59.510 34.615 0.00 0.00 38.97 1.94
36 37 7.025963 GCTATGACTCAAAGATGGTCAAAAAG 58.974 38.462 0.00 0.00 38.97 2.27
37 38 5.186996 TGACTCAAAGATGGTCAAAAAGC 57.813 39.130 0.00 0.00 35.32 3.51
38 39 4.889409 TGACTCAAAGATGGTCAAAAAGCT 59.111 37.500 0.00 0.00 35.32 3.74
39 40 6.061441 TGACTCAAAGATGGTCAAAAAGCTA 58.939 36.000 0.00 0.00 35.32 3.32
40 41 6.545666 TGACTCAAAGATGGTCAAAAAGCTAA 59.454 34.615 0.00 0.00 35.32 3.09
41 42 7.231317 TGACTCAAAGATGGTCAAAAAGCTAAT 59.769 33.333 0.00 0.00 35.32 1.73
42 43 8.635765 ACTCAAAGATGGTCAAAAAGCTAATA 57.364 30.769 0.00 0.00 0.00 0.98
43 44 8.734386 ACTCAAAGATGGTCAAAAAGCTAATAG 58.266 33.333 0.00 0.00 0.00 1.73
44 45 8.862325 TCAAAGATGGTCAAAAAGCTAATAGA 57.138 30.769 0.00 0.00 0.00 1.98
45 46 9.466497 TCAAAGATGGTCAAAAAGCTAATAGAT 57.534 29.630 0.00 0.00 0.00 1.98
46 47 9.512435 CAAAGATGGTCAAAAAGCTAATAGATG 57.488 33.333 0.00 0.00 0.00 2.90
47 48 7.814264 AGATGGTCAAAAAGCTAATAGATGG 57.186 36.000 0.00 0.00 0.00 3.51
48 49 6.774656 AGATGGTCAAAAAGCTAATAGATGGG 59.225 38.462 0.00 0.00 0.00 4.00
49 50 4.644685 TGGTCAAAAAGCTAATAGATGGGC 59.355 41.667 0.00 0.00 0.00 5.36
50 51 4.038042 GGTCAAAAAGCTAATAGATGGGCC 59.962 45.833 0.00 0.00 0.00 5.80
51 52 4.644685 GTCAAAAAGCTAATAGATGGGCCA 59.355 41.667 9.61 9.61 0.00 5.36
52 53 4.644685 TCAAAAAGCTAATAGATGGGCCAC 59.355 41.667 9.28 2.67 0.00 5.01
53 54 3.951563 AAAGCTAATAGATGGGCCACA 57.048 42.857 9.28 0.00 0.00 4.17
54 55 3.951563 AAGCTAATAGATGGGCCACAA 57.048 42.857 9.28 0.00 0.00 3.33
55 56 3.951563 AGCTAATAGATGGGCCACAAA 57.048 42.857 9.28 0.00 0.00 2.83
56 57 4.249638 AGCTAATAGATGGGCCACAAAA 57.750 40.909 9.28 0.00 0.00 2.44
57 58 4.210331 AGCTAATAGATGGGCCACAAAAG 58.790 43.478 9.28 3.03 0.00 2.27
58 59 3.319122 GCTAATAGATGGGCCACAAAAGG 59.681 47.826 9.28 0.00 0.00 3.11
59 60 3.473113 AATAGATGGGCCACAAAAGGT 57.527 42.857 9.28 0.00 0.00 3.50
60 61 4.601406 AATAGATGGGCCACAAAAGGTA 57.399 40.909 9.28 0.00 0.00 3.08
61 62 2.514458 AGATGGGCCACAAAAGGTAG 57.486 50.000 9.28 0.00 0.00 3.18
62 63 1.992557 AGATGGGCCACAAAAGGTAGA 59.007 47.619 9.28 0.00 0.00 2.59
63 64 2.025887 AGATGGGCCACAAAAGGTAGAG 60.026 50.000 9.28 0.00 0.00 2.43
64 65 0.404040 TGGGCCACAAAAGGTAGAGG 59.596 55.000 0.00 0.00 0.00 3.69
65 66 0.696501 GGGCCACAAAAGGTAGAGGA 59.303 55.000 4.39 0.00 0.00 3.71
66 67 1.340114 GGGCCACAAAAGGTAGAGGAG 60.340 57.143 4.39 0.00 0.00 3.69
67 68 1.628846 GGCCACAAAAGGTAGAGGAGA 59.371 52.381 0.00 0.00 0.00 3.71
68 69 2.355209 GGCCACAAAAGGTAGAGGAGAG 60.355 54.545 0.00 0.00 0.00 3.20
69 70 2.355209 GCCACAAAAGGTAGAGGAGAGG 60.355 54.545 0.00 0.00 0.00 3.69
70 71 2.237392 CCACAAAAGGTAGAGGAGAGGG 59.763 54.545 0.00 0.00 0.00 4.30
71 72 2.237392 CACAAAAGGTAGAGGAGAGGGG 59.763 54.545 0.00 0.00 0.00 4.79
72 73 1.840635 CAAAAGGTAGAGGAGAGGGGG 59.159 57.143 0.00 0.00 0.00 5.40
73 74 1.102938 AAAGGTAGAGGAGAGGGGGT 58.897 55.000 0.00 0.00 0.00 4.95
74 75 2.012168 AAGGTAGAGGAGAGGGGGTA 57.988 55.000 0.00 0.00 0.00 3.69
75 76 2.012168 AGGTAGAGGAGAGGGGGTAA 57.988 55.000 0.00 0.00 0.00 2.85
76 77 1.860906 AGGTAGAGGAGAGGGGGTAAG 59.139 57.143 0.00 0.00 0.00 2.34
77 78 1.858246 GGTAGAGGAGAGGGGGTAAGA 59.142 57.143 0.00 0.00 0.00 2.10
78 79 2.246849 GGTAGAGGAGAGGGGGTAAGAA 59.753 54.545 0.00 0.00 0.00 2.52
79 80 2.858787 AGAGGAGAGGGGGTAAGAAG 57.141 55.000 0.00 0.00 0.00 2.85
80 81 2.298951 AGAGGAGAGGGGGTAAGAAGA 58.701 52.381 0.00 0.00 0.00 2.87
81 82 2.246327 AGAGGAGAGGGGGTAAGAAGAG 59.754 54.545 0.00 0.00 0.00 2.85
82 83 2.012236 AGGAGAGGGGGTAAGAAGAGT 58.988 52.381 0.00 0.00 0.00 3.24
83 84 3.204831 GAGGAGAGGGGGTAAGAAGAGTA 59.795 52.174 0.00 0.00 0.00 2.59
84 85 3.205733 AGGAGAGGGGGTAAGAAGAGTAG 59.794 52.174 0.00 0.00 0.00 2.57
85 86 3.204831 GGAGAGGGGGTAAGAAGAGTAGA 59.795 52.174 0.00 0.00 0.00 2.59
86 87 4.209538 GAGAGGGGGTAAGAAGAGTAGAC 58.790 52.174 0.00 0.00 0.00 2.59
87 88 3.859859 AGAGGGGGTAAGAAGAGTAGACT 59.140 47.826 0.00 0.00 0.00 3.24
88 89 4.295506 AGAGGGGGTAAGAAGAGTAGACTT 59.704 45.833 0.00 0.00 0.00 3.01
89 90 5.495436 AGAGGGGGTAAGAAGAGTAGACTTA 59.505 44.000 0.00 0.00 0.00 2.24
90 91 5.517924 AGGGGGTAAGAAGAGTAGACTTAC 58.482 45.833 0.00 0.00 42.65 2.34
91 92 5.255916 AGGGGGTAAGAAGAGTAGACTTACT 59.744 44.000 0.00 0.00 42.83 2.24
92 93 6.449696 AGGGGGTAAGAAGAGTAGACTTACTA 59.550 42.308 0.00 0.00 42.83 1.82
120 121 8.591114 GGATACAAGATAGGGTATACAGCTAA 57.409 38.462 5.01 0.00 32.23 3.09
121 122 9.032624 GGATACAAGATAGGGTATACAGCTAAA 57.967 37.037 5.01 0.00 32.23 1.85
124 125 7.736893 ACAAGATAGGGTATACAGCTAAAAGG 58.263 38.462 5.01 0.00 0.00 3.11
125 126 6.936968 AGATAGGGTATACAGCTAAAAGGG 57.063 41.667 5.01 0.00 0.00 3.95
126 127 6.391351 AGATAGGGTATACAGCTAAAAGGGT 58.609 40.000 5.01 0.00 0.00 4.34
127 128 4.772886 AGGGTATACAGCTAAAAGGGTG 57.227 45.455 5.01 0.00 40.13 4.61
128 129 4.368067 AGGGTATACAGCTAAAAGGGTGA 58.632 43.478 5.01 0.00 38.01 4.02
129 130 4.409247 AGGGTATACAGCTAAAAGGGTGAG 59.591 45.833 5.01 0.00 38.01 3.51
130 131 4.407945 GGGTATACAGCTAAAAGGGTGAGA 59.592 45.833 5.01 0.00 38.01 3.27
131 132 5.071923 GGGTATACAGCTAAAAGGGTGAGAT 59.928 44.000 5.01 0.00 38.01 2.75
132 133 6.269307 GGGTATACAGCTAAAAGGGTGAGATA 59.731 42.308 5.01 0.00 38.01 1.98
133 134 7.379750 GGTATACAGCTAAAAGGGTGAGATAG 58.620 42.308 5.01 0.00 38.01 2.08
134 135 7.232941 GGTATACAGCTAAAAGGGTGAGATAGA 59.767 40.741 5.01 0.00 38.01 1.98
135 136 5.606348 ACAGCTAAAAGGGTGAGATAGAG 57.394 43.478 0.00 0.00 38.01 2.43
136 137 4.407296 ACAGCTAAAAGGGTGAGATAGAGG 59.593 45.833 0.00 0.00 38.01 3.69
137 138 4.651503 CAGCTAAAAGGGTGAGATAGAGGA 59.348 45.833 0.00 0.00 36.91 3.71
138 139 5.129485 CAGCTAAAAGGGTGAGATAGAGGAA 59.871 44.000 0.00 0.00 36.91 3.36
139 140 5.908247 AGCTAAAAGGGTGAGATAGAGGAAT 59.092 40.000 0.00 0.00 0.00 3.01
140 141 5.994668 GCTAAAAGGGTGAGATAGAGGAATG 59.005 44.000 0.00 0.00 0.00 2.67
141 142 6.183361 GCTAAAAGGGTGAGATAGAGGAATGA 60.183 42.308 0.00 0.00 0.00 2.57
142 143 5.622346 AAAGGGTGAGATAGAGGAATGAC 57.378 43.478 0.00 0.00 0.00 3.06
143 144 4.271807 AGGGTGAGATAGAGGAATGACA 57.728 45.455 0.00 0.00 0.00 3.58
144 145 4.825445 AGGGTGAGATAGAGGAATGACAT 58.175 43.478 0.00 0.00 0.00 3.06
145 146 4.592351 AGGGTGAGATAGAGGAATGACATG 59.408 45.833 0.00 0.00 0.00 3.21
146 147 4.590647 GGGTGAGATAGAGGAATGACATGA 59.409 45.833 0.00 0.00 0.00 3.07
147 148 5.279406 GGGTGAGATAGAGGAATGACATGAG 60.279 48.000 0.00 0.00 0.00 2.90
148 149 5.229423 GTGAGATAGAGGAATGACATGAGC 58.771 45.833 0.00 0.00 0.00 4.26
149 150 4.282957 TGAGATAGAGGAATGACATGAGCC 59.717 45.833 0.00 0.00 0.00 4.70
150 151 4.229639 AGATAGAGGAATGACATGAGCCA 58.770 43.478 0.00 0.00 0.00 4.75
151 152 4.283978 AGATAGAGGAATGACATGAGCCAG 59.716 45.833 0.00 0.00 0.00 4.85
152 153 2.194859 AGAGGAATGACATGAGCCAGT 58.805 47.619 0.00 0.00 0.00 4.00
153 154 2.093075 AGAGGAATGACATGAGCCAGTG 60.093 50.000 0.00 0.00 0.00 3.66
154 155 1.911357 AGGAATGACATGAGCCAGTGA 59.089 47.619 0.00 0.00 0.00 3.41
155 156 2.306805 AGGAATGACATGAGCCAGTGAA 59.693 45.455 0.00 0.00 0.00 3.18
156 157 3.084039 GGAATGACATGAGCCAGTGAAA 58.916 45.455 0.00 0.00 0.00 2.69
157 158 3.119708 GGAATGACATGAGCCAGTGAAAC 60.120 47.826 0.00 0.00 0.00 2.78
158 159 1.511850 TGACATGAGCCAGTGAAACG 58.488 50.000 0.00 0.00 45.86 3.60
159 160 0.798776 GACATGAGCCAGTGAAACGG 59.201 55.000 0.00 0.00 45.86 4.44
160 161 0.108585 ACATGAGCCAGTGAAACGGT 59.891 50.000 0.00 0.00 45.86 4.83
161 162 0.798776 CATGAGCCAGTGAAACGGTC 59.201 55.000 0.00 0.00 45.86 4.79
162 163 0.321653 ATGAGCCAGTGAAACGGTCC 60.322 55.000 0.00 0.00 45.86 4.46
163 164 1.070786 GAGCCAGTGAAACGGTCCA 59.929 57.895 0.00 0.00 45.86 4.02
164 165 1.227853 AGCCAGTGAAACGGTCCAC 60.228 57.895 0.00 5.74 45.86 4.02
200 201 7.639113 TTGAGCTATAACCATAAAACTTGGG 57.361 36.000 0.00 0.00 38.64 4.12
201 202 6.126409 TGAGCTATAACCATAAAACTTGGGG 58.874 40.000 0.00 0.00 38.64 4.96
202 203 6.069323 TGAGCTATAACCATAAAACTTGGGGA 60.069 38.462 0.00 0.00 38.64 4.81
203 204 6.365520 AGCTATAACCATAAAACTTGGGGAG 58.634 40.000 0.00 0.00 38.64 4.30
204 205 6.069029 AGCTATAACCATAAAACTTGGGGAGT 60.069 38.462 0.00 0.00 41.47 3.85
205 206 6.039382 GCTATAACCATAAAACTTGGGGAGTG 59.961 42.308 0.00 0.00 39.00 3.51
206 207 2.525368 ACCATAAAACTTGGGGAGTGC 58.475 47.619 0.00 0.00 39.00 4.40
207 208 1.824852 CCATAAAACTTGGGGAGTGCC 59.175 52.381 0.00 0.00 39.00 5.01
208 209 2.557452 CCATAAAACTTGGGGAGTGCCT 60.557 50.000 0.00 0.00 39.00 4.75
209 210 2.579410 TAAAACTTGGGGAGTGCCTC 57.421 50.000 0.00 0.00 39.00 4.70
210 211 0.555769 AAAACTTGGGGAGTGCCTCA 59.444 50.000 0.00 0.00 45.05 3.86
214 215 4.330056 TGGGGAGTGCCTCAAGAA 57.670 55.556 0.00 0.00 43.30 2.52
215 216 2.550787 TGGGGAGTGCCTCAAGAAA 58.449 52.632 0.00 0.00 43.30 2.52
216 217 0.850100 TGGGGAGTGCCTCAAGAAAA 59.150 50.000 0.00 0.00 43.30 2.29
217 218 1.428912 TGGGGAGTGCCTCAAGAAAAT 59.571 47.619 0.00 0.00 43.30 1.82
218 219 2.095461 GGGGAGTGCCTCAAGAAAATC 58.905 52.381 0.00 0.00 33.55 2.17
219 220 2.095461 GGGAGTGCCTCAAGAAAATCC 58.905 52.381 0.00 0.00 31.08 3.01
220 221 2.555227 GGGAGTGCCTCAAGAAAATCCA 60.555 50.000 0.00 0.00 31.08 3.41
221 222 3.359950 GGAGTGCCTCAAGAAAATCCAT 58.640 45.455 4.85 0.00 31.08 3.41
222 223 3.766051 GGAGTGCCTCAAGAAAATCCATT 59.234 43.478 4.85 0.00 31.08 3.16
223 224 4.381292 GGAGTGCCTCAAGAAAATCCATTG 60.381 45.833 4.85 0.00 31.08 2.82
224 225 4.410099 AGTGCCTCAAGAAAATCCATTGA 58.590 39.130 0.00 0.00 0.00 2.57
225 226 4.834496 AGTGCCTCAAGAAAATCCATTGAA 59.166 37.500 0.00 0.00 32.87 2.69
226 227 5.305128 AGTGCCTCAAGAAAATCCATTGAAA 59.695 36.000 0.00 0.00 32.87 2.69
227 228 6.013984 AGTGCCTCAAGAAAATCCATTGAAAT 60.014 34.615 0.00 0.00 32.87 2.17
228 229 7.178983 AGTGCCTCAAGAAAATCCATTGAAATA 59.821 33.333 0.00 0.00 32.87 1.40
229 230 7.490402 GTGCCTCAAGAAAATCCATTGAAATAG 59.510 37.037 0.00 0.00 32.87 1.73
230 231 7.396907 TGCCTCAAGAAAATCCATTGAAATAGA 59.603 33.333 0.00 0.00 32.87 1.98
231 232 8.253113 GCCTCAAGAAAATCCATTGAAATAGAA 58.747 33.333 0.00 0.00 32.87 2.10
232 233 9.798994 CCTCAAGAAAATCCATTGAAATAGAAG 57.201 33.333 0.00 0.00 32.87 2.85
235 236 9.578439 CAAGAAAATCCATTGAAATAGAAGACC 57.422 33.333 0.00 0.00 0.00 3.85
236 237 8.298729 AGAAAATCCATTGAAATAGAAGACCC 57.701 34.615 0.00 0.00 0.00 4.46
237 238 7.895429 AGAAAATCCATTGAAATAGAAGACCCA 59.105 33.333 0.00 0.00 0.00 4.51
238 239 7.651027 AAATCCATTGAAATAGAAGACCCAG 57.349 36.000 0.00 0.00 0.00 4.45
239 240 5.116084 TCCATTGAAATAGAAGACCCAGG 57.884 43.478 0.00 0.00 0.00 4.45
240 241 4.540099 TCCATTGAAATAGAAGACCCAGGT 59.460 41.667 0.00 0.00 0.00 4.00
241 242 5.015178 TCCATTGAAATAGAAGACCCAGGTT 59.985 40.000 0.00 0.00 0.00 3.50
242 243 5.126061 CCATTGAAATAGAAGACCCAGGTTG 59.874 44.000 0.00 0.00 0.00 3.77
243 244 4.993705 TGAAATAGAAGACCCAGGTTGT 57.006 40.909 0.00 0.00 0.00 3.32
244 245 6.442541 TTGAAATAGAAGACCCAGGTTGTA 57.557 37.500 0.00 0.00 0.00 2.41
245 246 6.442541 TGAAATAGAAGACCCAGGTTGTAA 57.557 37.500 0.00 0.00 0.00 2.41
246 247 7.027874 TGAAATAGAAGACCCAGGTTGTAAT 57.972 36.000 0.00 0.00 0.00 1.89
247 248 6.884295 TGAAATAGAAGACCCAGGTTGTAATG 59.116 38.462 0.00 0.00 0.00 1.90
248 249 3.721087 AGAAGACCCAGGTTGTAATGG 57.279 47.619 0.00 0.00 36.27 3.16
249 250 3.256704 AGAAGACCCAGGTTGTAATGGA 58.743 45.455 0.00 0.00 39.02 3.41
250 251 3.655777 AGAAGACCCAGGTTGTAATGGAA 59.344 43.478 0.00 0.00 39.02 3.53
251 252 3.434940 AGACCCAGGTTGTAATGGAAC 57.565 47.619 0.00 0.00 39.02 3.62
267 268 4.229304 TGGAACAGACAAAGGTTGAAGA 57.771 40.909 0.00 0.00 0.00 2.87
268 269 4.594970 TGGAACAGACAAAGGTTGAAGAA 58.405 39.130 0.00 0.00 0.00 2.52
269 270 4.640201 TGGAACAGACAAAGGTTGAAGAAG 59.360 41.667 0.00 0.00 0.00 2.85
270 271 4.881850 GGAACAGACAAAGGTTGAAGAAGA 59.118 41.667 0.00 0.00 0.00 2.87
271 272 5.220873 GGAACAGACAAAGGTTGAAGAAGAC 60.221 44.000 0.00 0.00 0.00 3.01
272 273 4.200092 ACAGACAAAGGTTGAAGAAGACC 58.800 43.478 0.00 0.00 36.15 3.85
273 274 4.199310 CAGACAAAGGTTGAAGAAGACCA 58.801 43.478 0.00 0.00 38.42 4.02
274 275 4.274459 CAGACAAAGGTTGAAGAAGACCAG 59.726 45.833 0.00 0.00 38.42 4.00
275 276 2.952310 ACAAAGGTTGAAGAAGACCAGC 59.048 45.455 0.00 0.00 38.42 4.85
276 277 2.951642 CAAAGGTTGAAGAAGACCAGCA 59.048 45.455 0.00 0.00 38.42 4.41
277 278 2.557920 AGGTTGAAGAAGACCAGCAG 57.442 50.000 0.00 0.00 38.42 4.24
278 279 1.072965 AGGTTGAAGAAGACCAGCAGG 59.927 52.381 0.00 0.00 38.42 4.85
279 280 1.072331 GGTTGAAGAAGACCAGCAGGA 59.928 52.381 0.35 0.00 38.69 3.86
280 281 2.487265 GGTTGAAGAAGACCAGCAGGAA 60.487 50.000 0.35 0.00 38.69 3.36
281 282 2.810852 GTTGAAGAAGACCAGCAGGAAG 59.189 50.000 0.35 0.00 38.69 3.46
282 283 1.349026 TGAAGAAGACCAGCAGGAAGG 59.651 52.381 0.35 0.00 38.69 3.46
283 284 0.695347 AAGAAGACCAGCAGGAAGGG 59.305 55.000 0.35 0.00 38.69 3.95
284 285 0.474660 AGAAGACCAGCAGGAAGGGT 60.475 55.000 0.35 0.00 38.69 4.34
285 286 0.322008 GAAGACCAGCAGGAAGGGTG 60.322 60.000 0.35 0.00 38.69 4.61
286 287 1.062488 AAGACCAGCAGGAAGGGTGT 61.062 55.000 0.35 0.00 38.69 4.16
287 288 1.302832 GACCAGCAGGAAGGGTGTG 60.303 63.158 0.35 0.00 38.69 3.82
288 289 2.674380 CCAGCAGGAAGGGTGTGC 60.674 66.667 0.00 0.00 36.89 4.57
290 291 1.673665 CAGCAGGAAGGGTGTGCTC 60.674 63.158 0.00 0.00 45.82 4.26
291 292 2.149383 AGCAGGAAGGGTGTGCTCA 61.149 57.895 0.00 0.00 44.28 4.26
292 293 1.968540 GCAGGAAGGGTGTGCTCAC 60.969 63.158 10.44 10.44 43.19 3.51
293 294 1.757306 CAGGAAGGGTGTGCTCACT 59.243 57.895 17.68 0.00 43.41 3.41
294 295 0.321122 CAGGAAGGGTGTGCTCACTC 60.321 60.000 17.68 14.51 44.73 3.51
299 300 3.403936 GGGTGTGCTCACTCTTGTT 57.596 52.632 17.68 0.00 41.46 2.83
300 301 0.947244 GGGTGTGCTCACTCTTGTTG 59.053 55.000 17.68 0.00 41.46 3.33
301 302 1.475034 GGGTGTGCTCACTCTTGTTGA 60.475 52.381 17.68 0.00 41.46 3.18
314 315 5.490139 CTCTTGTTGAGTTGACACACATT 57.510 39.130 0.00 0.00 37.99 2.71
315 316 6.603237 CTCTTGTTGAGTTGACACACATTA 57.397 37.500 0.00 0.00 37.99 1.90
316 317 6.358118 TCTTGTTGAGTTGACACACATTAC 57.642 37.500 0.00 0.00 0.00 1.89
317 318 5.877564 TCTTGTTGAGTTGACACACATTACA 59.122 36.000 0.00 0.00 0.00 2.41
318 319 5.733226 TGTTGAGTTGACACACATTACAG 57.267 39.130 0.00 0.00 0.00 2.74
319 320 5.182487 TGTTGAGTTGACACACATTACAGT 58.818 37.500 0.00 0.00 0.00 3.55
320 321 5.064579 TGTTGAGTTGACACACATTACAGTG 59.935 40.000 0.00 0.00 44.93 3.66
321 322 5.017294 TGAGTTGACACACATTACAGTGA 57.983 39.130 0.00 0.00 42.05 3.41
322 323 5.423886 TGAGTTGACACACATTACAGTGAA 58.576 37.500 0.00 0.00 42.05 3.18
323 324 5.523552 TGAGTTGACACACATTACAGTGAAG 59.476 40.000 0.00 0.00 42.05 3.02
324 325 5.670485 AGTTGACACACATTACAGTGAAGA 58.330 37.500 0.00 0.00 42.05 2.87
325 326 6.112734 AGTTGACACACATTACAGTGAAGAA 58.887 36.000 0.00 0.00 42.05 2.52
326 327 5.984233 TGACACACATTACAGTGAAGAAC 57.016 39.130 0.00 0.00 42.05 3.01
327 328 5.423886 TGACACACATTACAGTGAAGAACA 58.576 37.500 0.00 0.00 42.05 3.18
328 329 5.877564 TGACACACATTACAGTGAAGAACAA 59.122 36.000 0.00 0.00 42.05 2.83
329 330 6.372937 TGACACACATTACAGTGAAGAACAAA 59.627 34.615 0.00 0.00 42.05 2.83
330 331 6.551736 ACACACATTACAGTGAAGAACAAAC 58.448 36.000 0.00 0.00 42.05 2.93
331 332 6.374333 ACACACATTACAGTGAAGAACAAACT 59.626 34.615 0.00 0.00 42.05 2.66
332 333 6.688385 CACACATTACAGTGAAGAACAAACTG 59.312 38.462 0.00 0.67 45.46 3.16
333 334 6.183360 ACACATTACAGTGAAGAACAAACTGG 60.183 38.462 0.00 0.00 44.49 4.00
334 335 5.885912 ACATTACAGTGAAGAACAAACTGGT 59.114 36.000 0.00 0.00 44.49 4.00
335 336 6.038271 ACATTACAGTGAAGAACAAACTGGTC 59.962 38.462 0.00 0.00 44.49 4.02
336 337 3.279434 ACAGTGAAGAACAAACTGGTCC 58.721 45.455 0.00 0.00 44.49 4.46
337 338 3.278574 CAGTGAAGAACAAACTGGTCCA 58.721 45.455 0.00 0.00 33.71 4.02
338 339 3.885297 CAGTGAAGAACAAACTGGTCCAT 59.115 43.478 0.00 0.00 33.71 3.41
339 340 3.885297 AGTGAAGAACAAACTGGTCCATG 59.115 43.478 0.00 0.00 33.71 3.66
340 341 3.882888 GTGAAGAACAAACTGGTCCATGA 59.117 43.478 0.00 0.00 33.71 3.07
341 342 4.520492 GTGAAGAACAAACTGGTCCATGAT 59.480 41.667 0.00 0.00 33.71 2.45
342 343 5.705441 GTGAAGAACAAACTGGTCCATGATA 59.295 40.000 0.00 0.00 33.71 2.15
343 344 6.375455 GTGAAGAACAAACTGGTCCATGATAT 59.625 38.462 0.00 0.00 33.71 1.63
344 345 6.947733 TGAAGAACAAACTGGTCCATGATATT 59.052 34.615 0.00 0.00 33.71 1.28
345 346 6.764308 AGAACAAACTGGTCCATGATATTG 57.236 37.500 0.00 0.00 33.71 1.90
346 347 6.484288 AGAACAAACTGGTCCATGATATTGA 58.516 36.000 0.00 0.00 33.71 2.57
347 348 6.947733 AGAACAAACTGGTCCATGATATTGAA 59.052 34.615 0.00 0.00 33.71 2.69
348 349 7.451255 AGAACAAACTGGTCCATGATATTGAAA 59.549 33.333 0.00 0.00 33.71 2.69
349 350 7.722949 ACAAACTGGTCCATGATATTGAAAT 57.277 32.000 0.00 0.00 0.00 2.17
350 351 8.821686 ACAAACTGGTCCATGATATTGAAATA 57.178 30.769 0.00 0.00 0.00 1.40
351 352 9.425248 ACAAACTGGTCCATGATATTGAAATAT 57.575 29.630 0.00 0.00 34.41 1.28
379 380 8.882415 ACGATAATAGATTTTGTACGGATGTT 57.118 30.769 0.00 0.00 0.00 2.71
380 381 9.970395 ACGATAATAGATTTTGTACGGATGTTA 57.030 29.630 0.00 0.00 0.00 2.41
393 394 8.969121 TGTACGGATGTTAACATATTATACCG 57.031 34.615 28.63 28.63 41.85 4.02
394 395 8.028354 TGTACGGATGTTAACATATTATACCGG 58.972 37.037 31.18 19.98 40.70 5.28
395 396 7.230849 ACGGATGTTAACATATTATACCGGA 57.769 36.000 31.18 3.27 40.70 5.14
396 397 7.669427 ACGGATGTTAACATATTATACCGGAA 58.331 34.615 31.18 0.00 40.70 4.30
397 398 8.149647 ACGGATGTTAACATATTATACCGGAAA 58.850 33.333 31.18 0.00 40.70 3.13
398 399 8.653338 CGGATGTTAACATATTATACCGGAAAG 58.347 37.037 25.32 7.37 36.57 2.62
399 400 8.943002 GGATGTTAACATATTATACCGGAAAGG 58.057 37.037 20.83 0.00 40.70 3.11
400 401 9.498176 GATGTTAACATATTATACCGGAAAGGT 57.502 33.333 20.83 0.00 46.16 3.50
401 402 9.280174 ATGTTAACATATTATACCGGAAAGGTG 57.720 33.333 19.51 5.30 43.85 4.00
411 412 3.906720 CCGGAAAGGTGAAAGATAGGA 57.093 47.619 0.00 0.00 34.51 2.94
412 413 4.423625 CCGGAAAGGTGAAAGATAGGAT 57.576 45.455 0.00 0.00 34.51 3.24
413 414 5.546621 CCGGAAAGGTGAAAGATAGGATA 57.453 43.478 0.00 0.00 34.51 2.59
414 415 5.298347 CCGGAAAGGTGAAAGATAGGATAC 58.702 45.833 0.00 0.00 34.51 2.24
415 416 5.163343 CCGGAAAGGTGAAAGATAGGATACA 60.163 44.000 0.00 0.00 34.78 2.29
416 417 6.464465 CCGGAAAGGTGAAAGATAGGATACAT 60.464 42.308 0.00 0.00 34.78 2.29
417 418 7.256190 CCGGAAAGGTGAAAGATAGGATACATA 60.256 40.741 0.00 0.00 34.78 2.29
418 419 8.314751 CGGAAAGGTGAAAGATAGGATACATAT 58.685 37.037 0.00 0.00 41.41 1.78
419 420 9.442047 GGAAAGGTGAAAGATAGGATACATATG 57.558 37.037 0.00 0.00 41.41 1.78
556 557 2.740714 CGCCAAAGCCGACTAGCAC 61.741 63.158 0.00 0.00 34.57 4.40
721 722 0.615544 ATTCCACCGGGGTCTTACGA 60.616 55.000 6.32 0.00 38.11 3.43
899 900 2.989840 CCGATGAACAGTCACTCACTTC 59.010 50.000 0.00 0.00 36.31 3.01
1049 1050 1.446016 AGTTGGGCTGTACCTTCCTT 58.554 50.000 0.00 0.00 39.10 3.36
1688 2490 4.460263 AGCGGGTCATATATGCTTTTTGA 58.540 39.130 7.92 0.00 30.27 2.69
1950 2852 4.069304 CAGATTTACCAACGGGAAGAACA 58.931 43.478 0.00 0.00 38.05 3.18
1961 2863 5.479124 ACGGGAAGAACACTTAGTGTATT 57.521 39.130 18.93 15.74 46.79 1.89
1990 2892 3.369576 GGGTGAATCTTAGGAAACTCGCT 60.370 47.826 0.00 0.00 43.67 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.194640 TCTTTGAGTCATAGCAAGATGGC 58.805 43.478 5.77 0.00 0.00 4.40
4 5 5.238868 CCATCTTTGAGTCATAGCAAGATGG 59.761 44.000 31.35 31.35 39.89 3.51
5 6 5.821470 ACCATCTTTGAGTCATAGCAAGATG 59.179 40.000 25.44 25.44 33.91 2.90
6 7 5.999044 ACCATCTTTGAGTCATAGCAAGAT 58.001 37.500 10.67 10.67 0.00 2.40
7 8 5.046376 TGACCATCTTTGAGTCATAGCAAGA 60.046 40.000 7.31 7.31 35.67 3.02
8 9 5.181009 TGACCATCTTTGAGTCATAGCAAG 58.819 41.667 5.77 1.26 35.67 4.01
9 10 5.164620 TGACCATCTTTGAGTCATAGCAA 57.835 39.130 5.77 0.00 35.67 3.91
10 11 4.824479 TGACCATCTTTGAGTCATAGCA 57.176 40.909 5.77 0.00 35.67 3.49
11 12 6.500684 TTTTGACCATCTTTGAGTCATAGC 57.499 37.500 5.77 0.00 40.06 2.97
12 13 7.025963 GCTTTTTGACCATCTTTGAGTCATAG 58.974 38.462 4.34 4.34 40.06 2.23
13 14 6.716628 AGCTTTTTGACCATCTTTGAGTCATA 59.283 34.615 0.00 0.00 40.06 2.15
14 15 5.537674 AGCTTTTTGACCATCTTTGAGTCAT 59.462 36.000 0.00 0.00 40.06 3.06
15 16 4.889409 AGCTTTTTGACCATCTTTGAGTCA 59.111 37.500 0.00 0.00 38.70 3.41
16 17 5.444663 AGCTTTTTGACCATCTTTGAGTC 57.555 39.130 0.00 0.00 0.00 3.36
17 18 6.959639 TTAGCTTTTTGACCATCTTTGAGT 57.040 33.333 0.00 0.00 0.00 3.41
18 19 8.950210 TCTATTAGCTTTTTGACCATCTTTGAG 58.050 33.333 0.00 0.00 0.00 3.02
19 20 8.862325 TCTATTAGCTTTTTGACCATCTTTGA 57.138 30.769 0.00 0.00 0.00 2.69
20 21 9.512435 CATCTATTAGCTTTTTGACCATCTTTG 57.488 33.333 0.00 0.00 0.00 2.77
21 22 8.689972 CCATCTATTAGCTTTTTGACCATCTTT 58.310 33.333 0.00 0.00 0.00 2.52
22 23 7.286316 CCCATCTATTAGCTTTTTGACCATCTT 59.714 37.037 0.00 0.00 0.00 2.40
23 24 6.774656 CCCATCTATTAGCTTTTTGACCATCT 59.225 38.462 0.00 0.00 0.00 2.90
24 25 6.515696 GCCCATCTATTAGCTTTTTGACCATC 60.516 42.308 0.00 0.00 0.00 3.51
25 26 5.302823 GCCCATCTATTAGCTTTTTGACCAT 59.697 40.000 0.00 0.00 0.00 3.55
26 27 4.644685 GCCCATCTATTAGCTTTTTGACCA 59.355 41.667 0.00 0.00 0.00 4.02
27 28 4.038042 GGCCCATCTATTAGCTTTTTGACC 59.962 45.833 0.00 0.00 0.00 4.02
28 29 4.644685 TGGCCCATCTATTAGCTTTTTGAC 59.355 41.667 0.00 0.00 0.00 3.18
29 30 4.644685 GTGGCCCATCTATTAGCTTTTTGA 59.355 41.667 0.00 0.00 0.00 2.69
30 31 4.402155 TGTGGCCCATCTATTAGCTTTTTG 59.598 41.667 0.00 0.00 0.00 2.44
31 32 4.609301 TGTGGCCCATCTATTAGCTTTTT 58.391 39.130 0.00 0.00 0.00 1.94
32 33 4.249638 TGTGGCCCATCTATTAGCTTTT 57.750 40.909 0.00 0.00 0.00 2.27
33 34 3.951563 TGTGGCCCATCTATTAGCTTT 57.048 42.857 0.00 0.00 0.00 3.51
34 35 3.951563 TTGTGGCCCATCTATTAGCTT 57.048 42.857 0.00 0.00 0.00 3.74
35 36 3.951563 TTTGTGGCCCATCTATTAGCT 57.048 42.857 0.00 0.00 0.00 3.32
36 37 3.319122 CCTTTTGTGGCCCATCTATTAGC 59.681 47.826 0.00 0.00 0.00 3.09
37 38 4.536765 ACCTTTTGTGGCCCATCTATTAG 58.463 43.478 0.00 0.00 0.00 1.73
38 39 4.601406 ACCTTTTGTGGCCCATCTATTA 57.399 40.909 0.00 0.00 0.00 0.98
39 40 3.473113 ACCTTTTGTGGCCCATCTATT 57.527 42.857 0.00 0.00 0.00 1.73
40 41 3.785887 TCTACCTTTTGTGGCCCATCTAT 59.214 43.478 0.00 0.00 0.00 1.98
41 42 3.186283 TCTACCTTTTGTGGCCCATCTA 58.814 45.455 0.00 0.00 0.00 1.98
42 43 1.992557 TCTACCTTTTGTGGCCCATCT 59.007 47.619 0.00 0.00 0.00 2.90
43 44 2.369394 CTCTACCTTTTGTGGCCCATC 58.631 52.381 0.00 0.00 0.00 3.51
44 45 1.005924 CCTCTACCTTTTGTGGCCCAT 59.994 52.381 0.00 0.00 0.00 4.00
45 46 0.404040 CCTCTACCTTTTGTGGCCCA 59.596 55.000 0.00 0.00 0.00 5.36
46 47 0.696501 TCCTCTACCTTTTGTGGCCC 59.303 55.000 0.00 0.00 0.00 5.80
47 48 1.628846 TCTCCTCTACCTTTTGTGGCC 59.371 52.381 0.00 0.00 0.00 5.36
48 49 2.355209 CCTCTCCTCTACCTTTTGTGGC 60.355 54.545 0.00 0.00 0.00 5.01
49 50 2.237392 CCCTCTCCTCTACCTTTTGTGG 59.763 54.545 0.00 0.00 0.00 4.17
50 51 2.237392 CCCCTCTCCTCTACCTTTTGTG 59.763 54.545 0.00 0.00 0.00 3.33
51 52 2.552367 CCCCTCTCCTCTACCTTTTGT 58.448 52.381 0.00 0.00 0.00 2.83
52 53 1.840635 CCCCCTCTCCTCTACCTTTTG 59.159 57.143 0.00 0.00 0.00 2.44
53 54 1.441553 ACCCCCTCTCCTCTACCTTTT 59.558 52.381 0.00 0.00 0.00 2.27
54 55 1.102938 ACCCCCTCTCCTCTACCTTT 58.897 55.000 0.00 0.00 0.00 3.11
55 56 2.012168 TACCCCCTCTCCTCTACCTT 57.988 55.000 0.00 0.00 0.00 3.50
56 57 1.860906 CTTACCCCCTCTCCTCTACCT 59.139 57.143 0.00 0.00 0.00 3.08
57 58 1.858246 TCTTACCCCCTCTCCTCTACC 59.142 57.143 0.00 0.00 0.00 3.18
58 59 3.204831 TCTTCTTACCCCCTCTCCTCTAC 59.795 52.174 0.00 0.00 0.00 2.59
59 60 3.464080 CTCTTCTTACCCCCTCTCCTCTA 59.536 52.174 0.00 0.00 0.00 2.43
60 61 2.246327 CTCTTCTTACCCCCTCTCCTCT 59.754 54.545 0.00 0.00 0.00 3.69
61 62 2.023791 ACTCTTCTTACCCCCTCTCCTC 60.024 54.545 0.00 0.00 0.00 3.71
62 63 2.012236 ACTCTTCTTACCCCCTCTCCT 58.988 52.381 0.00 0.00 0.00 3.69
63 64 2.553911 ACTCTTCTTACCCCCTCTCC 57.446 55.000 0.00 0.00 0.00 3.71
64 65 4.079615 AGTCTACTCTTCTTACCCCCTCTC 60.080 50.000 0.00 0.00 0.00 3.20
65 66 3.859859 AGTCTACTCTTCTTACCCCCTCT 59.140 47.826 0.00 0.00 0.00 3.69
66 67 4.254039 AGTCTACTCTTCTTACCCCCTC 57.746 50.000 0.00 0.00 0.00 4.30
67 68 4.696040 AAGTCTACTCTTCTTACCCCCT 57.304 45.455 0.00 0.00 0.00 4.79
68 69 5.517924 AGTAAGTCTACTCTTCTTACCCCC 58.482 45.833 9.64 0.00 42.25 5.40
69 70 7.566760 GTAGTAAGTCTACTCTTCTTACCCC 57.433 44.000 9.64 0.29 43.93 4.95
83 84 7.945664 CCCTATCTTGTATCCAGTAGTAAGTCT 59.054 40.741 0.00 0.00 0.00 3.24
84 85 7.724951 ACCCTATCTTGTATCCAGTAGTAAGTC 59.275 40.741 0.00 0.00 0.00 3.01
85 86 7.593653 ACCCTATCTTGTATCCAGTAGTAAGT 58.406 38.462 0.00 0.00 0.00 2.24
86 87 9.756571 ATACCCTATCTTGTATCCAGTAGTAAG 57.243 37.037 0.00 0.00 0.00 2.34
89 90 8.676020 TGTATACCCTATCTTGTATCCAGTAGT 58.324 37.037 0.00 0.00 0.00 2.73
90 91 9.179909 CTGTATACCCTATCTTGTATCCAGTAG 57.820 40.741 0.00 0.00 30.88 2.57
91 92 7.614583 GCTGTATACCCTATCTTGTATCCAGTA 59.385 40.741 0.00 0.00 35.21 2.74
92 93 6.437793 GCTGTATACCCTATCTTGTATCCAGT 59.562 42.308 0.00 0.00 35.21 4.00
93 94 6.665680 AGCTGTATACCCTATCTTGTATCCAG 59.334 42.308 0.00 0.00 35.61 3.86
94 95 6.562228 AGCTGTATACCCTATCTTGTATCCA 58.438 40.000 0.00 0.00 0.00 3.41
95 96 8.591114 TTAGCTGTATACCCTATCTTGTATCC 57.409 38.462 0.00 0.00 0.00 2.59
98 99 8.867097 CCTTTTAGCTGTATACCCTATCTTGTA 58.133 37.037 0.00 0.00 0.00 2.41
99 100 7.202102 CCCTTTTAGCTGTATACCCTATCTTGT 60.202 40.741 0.00 0.00 0.00 3.16
100 101 7.162082 CCCTTTTAGCTGTATACCCTATCTTG 58.838 42.308 0.00 0.00 0.00 3.02
101 102 6.850231 ACCCTTTTAGCTGTATACCCTATCTT 59.150 38.462 0.00 0.00 0.00 2.40
102 103 6.270231 CACCCTTTTAGCTGTATACCCTATCT 59.730 42.308 0.00 0.00 0.00 1.98
103 104 6.269307 TCACCCTTTTAGCTGTATACCCTATC 59.731 42.308 0.00 0.00 0.00 2.08
104 105 6.148186 TCACCCTTTTAGCTGTATACCCTAT 58.852 40.000 0.00 0.00 0.00 2.57
105 106 5.531198 TCACCCTTTTAGCTGTATACCCTA 58.469 41.667 0.00 0.00 0.00 3.53
106 107 4.368067 TCACCCTTTTAGCTGTATACCCT 58.632 43.478 0.00 0.00 0.00 4.34
107 108 4.407945 TCTCACCCTTTTAGCTGTATACCC 59.592 45.833 0.00 0.00 0.00 3.69
108 109 5.609533 TCTCACCCTTTTAGCTGTATACC 57.390 43.478 0.00 0.00 0.00 2.73
109 110 8.179509 TCTATCTCACCCTTTTAGCTGTATAC 57.820 38.462 0.00 0.00 0.00 1.47
110 111 7.451877 CCTCTATCTCACCCTTTTAGCTGTATA 59.548 40.741 0.00 0.00 0.00 1.47
111 112 6.268847 CCTCTATCTCACCCTTTTAGCTGTAT 59.731 42.308 0.00 0.00 0.00 2.29
112 113 5.598830 CCTCTATCTCACCCTTTTAGCTGTA 59.401 44.000 0.00 0.00 0.00 2.74
113 114 4.407296 CCTCTATCTCACCCTTTTAGCTGT 59.593 45.833 0.00 0.00 0.00 4.40
114 115 4.651503 TCCTCTATCTCACCCTTTTAGCTG 59.348 45.833 0.00 0.00 0.00 4.24
115 116 4.884961 TCCTCTATCTCACCCTTTTAGCT 58.115 43.478 0.00 0.00 0.00 3.32
116 117 5.615925 TTCCTCTATCTCACCCTTTTAGC 57.384 43.478 0.00 0.00 0.00 3.09
117 118 7.147655 TGTCATTCCTCTATCTCACCCTTTTAG 60.148 40.741 0.00 0.00 0.00 1.85
118 119 6.672218 TGTCATTCCTCTATCTCACCCTTTTA 59.328 38.462 0.00 0.00 0.00 1.52
119 120 5.488919 TGTCATTCCTCTATCTCACCCTTTT 59.511 40.000 0.00 0.00 0.00 2.27
120 121 5.032846 TGTCATTCCTCTATCTCACCCTTT 58.967 41.667 0.00 0.00 0.00 3.11
121 122 4.624913 TGTCATTCCTCTATCTCACCCTT 58.375 43.478 0.00 0.00 0.00 3.95
122 123 4.271807 TGTCATTCCTCTATCTCACCCT 57.728 45.455 0.00 0.00 0.00 4.34
123 124 4.590647 TCATGTCATTCCTCTATCTCACCC 59.409 45.833 0.00 0.00 0.00 4.61
124 125 5.782047 CTCATGTCATTCCTCTATCTCACC 58.218 45.833 0.00 0.00 0.00 4.02
125 126 5.229423 GCTCATGTCATTCCTCTATCTCAC 58.771 45.833 0.00 0.00 0.00 3.51
126 127 4.282957 GGCTCATGTCATTCCTCTATCTCA 59.717 45.833 0.00 0.00 0.00 3.27
127 128 4.282957 TGGCTCATGTCATTCCTCTATCTC 59.717 45.833 0.00 0.00 0.00 2.75
128 129 4.229639 TGGCTCATGTCATTCCTCTATCT 58.770 43.478 0.00 0.00 0.00 1.98
129 130 4.040217 ACTGGCTCATGTCATTCCTCTATC 59.960 45.833 0.00 0.00 0.00 2.08
130 131 3.972638 ACTGGCTCATGTCATTCCTCTAT 59.027 43.478 0.00 0.00 0.00 1.98
131 132 3.133542 CACTGGCTCATGTCATTCCTCTA 59.866 47.826 0.00 0.00 0.00 2.43
132 133 2.093075 CACTGGCTCATGTCATTCCTCT 60.093 50.000 0.00 0.00 0.00 3.69
133 134 2.093288 TCACTGGCTCATGTCATTCCTC 60.093 50.000 0.00 0.00 0.00 3.71
134 135 1.911357 TCACTGGCTCATGTCATTCCT 59.089 47.619 0.00 0.00 0.00 3.36
135 136 2.408271 TCACTGGCTCATGTCATTCC 57.592 50.000 0.00 0.00 0.00 3.01
136 137 3.425359 CGTTTCACTGGCTCATGTCATTC 60.425 47.826 0.00 0.00 0.00 2.67
137 138 2.485426 CGTTTCACTGGCTCATGTCATT 59.515 45.455 0.00 0.00 0.00 2.57
138 139 2.079158 CGTTTCACTGGCTCATGTCAT 58.921 47.619 0.00 0.00 0.00 3.06
139 140 1.511850 CGTTTCACTGGCTCATGTCA 58.488 50.000 0.00 0.00 0.00 3.58
140 141 0.798776 CCGTTTCACTGGCTCATGTC 59.201 55.000 0.00 0.00 0.00 3.06
141 142 0.108585 ACCGTTTCACTGGCTCATGT 59.891 50.000 0.00 0.00 0.00 3.21
142 143 0.798776 GACCGTTTCACTGGCTCATG 59.201 55.000 0.00 0.00 0.00 3.07
143 144 0.321653 GGACCGTTTCACTGGCTCAT 60.322 55.000 0.00 0.00 0.00 2.90
144 145 1.070786 GGACCGTTTCACTGGCTCA 59.929 57.895 0.00 0.00 0.00 4.26
145 146 1.070786 TGGACCGTTTCACTGGCTC 59.929 57.895 0.00 0.00 0.00 4.70
146 147 1.227853 GTGGACCGTTTCACTGGCT 60.228 57.895 0.00 0.00 0.00 4.75
147 148 2.604174 CGTGGACCGTTTCACTGGC 61.604 63.158 0.00 0.00 0.00 4.85
148 149 1.068417 TCGTGGACCGTTTCACTGG 59.932 57.895 0.00 0.00 37.94 4.00
149 150 1.219522 GGTCGTGGACCGTTTCACTG 61.220 60.000 0.00 0.00 43.14 3.66
150 151 1.068585 GGTCGTGGACCGTTTCACT 59.931 57.895 0.00 0.00 43.14 3.41
151 152 3.633951 GGTCGTGGACCGTTTCAC 58.366 61.111 0.00 0.00 43.14 3.18
159 160 2.993899 CTCAATACTTGTGGTCGTGGAC 59.006 50.000 0.00 0.00 0.00 4.02
160 161 2.611971 GCTCAATACTTGTGGTCGTGGA 60.612 50.000 0.00 0.00 0.00 4.02
161 162 1.732259 GCTCAATACTTGTGGTCGTGG 59.268 52.381 0.00 0.00 0.00 4.94
162 163 2.688507 AGCTCAATACTTGTGGTCGTG 58.311 47.619 0.00 0.00 29.97 4.35
163 164 4.737855 ATAGCTCAATACTTGTGGTCGT 57.262 40.909 0.00 0.00 36.44 4.34
164 165 5.462398 GGTTATAGCTCAATACTTGTGGTCG 59.538 44.000 0.00 0.00 36.44 4.79
165 166 6.346096 TGGTTATAGCTCAATACTTGTGGTC 58.654 40.000 0.00 0.00 36.44 4.02
166 167 6.308015 TGGTTATAGCTCAATACTTGTGGT 57.692 37.500 0.00 0.30 38.30 4.16
167 168 8.902540 TTATGGTTATAGCTCAATACTTGTGG 57.097 34.615 0.00 0.00 0.00 4.17
174 175 9.349713 CCCAAGTTTTATGGTTATAGCTCAATA 57.650 33.333 0.00 0.00 36.14 1.90
175 176 7.287696 CCCCAAGTTTTATGGTTATAGCTCAAT 59.712 37.037 0.00 0.00 36.14 2.57
176 177 6.605594 CCCCAAGTTTTATGGTTATAGCTCAA 59.394 38.462 0.00 0.00 36.14 3.02
177 178 6.069323 TCCCCAAGTTTTATGGTTATAGCTCA 60.069 38.462 0.00 0.00 36.14 4.26
178 179 6.362248 TCCCCAAGTTTTATGGTTATAGCTC 58.638 40.000 0.00 0.00 36.14 4.09
179 180 6.069029 ACTCCCCAAGTTTTATGGTTATAGCT 60.069 38.462 0.00 0.00 33.03 3.32
180 181 6.039382 CACTCCCCAAGTTTTATGGTTATAGC 59.961 42.308 0.00 0.00 35.45 2.97
181 182 6.039382 GCACTCCCCAAGTTTTATGGTTATAG 59.961 42.308 0.00 0.00 35.45 1.31
182 183 5.889289 GCACTCCCCAAGTTTTATGGTTATA 59.111 40.000 0.00 0.00 35.45 0.98
183 184 4.709886 GCACTCCCCAAGTTTTATGGTTAT 59.290 41.667 0.00 0.00 35.45 1.89
184 185 4.083565 GCACTCCCCAAGTTTTATGGTTA 58.916 43.478 0.00 0.00 35.45 2.85
185 186 2.897326 GCACTCCCCAAGTTTTATGGTT 59.103 45.455 0.00 0.00 35.45 3.67
186 187 2.525368 GCACTCCCCAAGTTTTATGGT 58.475 47.619 0.00 0.00 35.45 3.55
187 188 1.824852 GGCACTCCCCAAGTTTTATGG 59.175 52.381 0.00 0.00 35.45 2.74
188 189 2.807676 AGGCACTCCCCAAGTTTTATG 58.192 47.619 0.00 0.00 35.45 1.90
203 204 4.789012 TCAATGGATTTTCTTGAGGCAC 57.211 40.909 0.00 0.00 0.00 5.01
204 205 5.804944 TTTCAATGGATTTTCTTGAGGCA 57.195 34.783 0.00 0.00 31.11 4.75
205 206 7.775120 TCTATTTCAATGGATTTTCTTGAGGC 58.225 34.615 0.00 0.00 31.11 4.70
206 207 9.798994 CTTCTATTTCAATGGATTTTCTTGAGG 57.201 33.333 0.00 0.00 31.11 3.86
209 210 9.578439 GGTCTTCTATTTCAATGGATTTTCTTG 57.422 33.333 0.00 0.00 0.00 3.02
210 211 8.753133 GGGTCTTCTATTTCAATGGATTTTCTT 58.247 33.333 0.00 0.00 0.00 2.52
211 212 7.895429 TGGGTCTTCTATTTCAATGGATTTTCT 59.105 33.333 0.00 0.00 0.00 2.52
212 213 8.066612 TGGGTCTTCTATTTCAATGGATTTTC 57.933 34.615 0.00 0.00 0.00 2.29
213 214 7.124750 CCTGGGTCTTCTATTTCAATGGATTTT 59.875 37.037 0.00 0.00 0.00 1.82
214 215 6.608808 CCTGGGTCTTCTATTTCAATGGATTT 59.391 38.462 0.00 0.00 0.00 2.17
215 216 6.131961 CCTGGGTCTTCTATTTCAATGGATT 58.868 40.000 0.00 0.00 0.00 3.01
216 217 5.194537 ACCTGGGTCTTCTATTTCAATGGAT 59.805 40.000 0.00 0.00 0.00 3.41
217 218 4.540099 ACCTGGGTCTTCTATTTCAATGGA 59.460 41.667 0.00 0.00 0.00 3.41
218 219 4.860022 ACCTGGGTCTTCTATTTCAATGG 58.140 43.478 0.00 0.00 0.00 3.16
219 220 5.711976 ACAACCTGGGTCTTCTATTTCAATG 59.288 40.000 0.00 0.00 0.00 2.82
220 221 5.892348 ACAACCTGGGTCTTCTATTTCAAT 58.108 37.500 0.00 0.00 0.00 2.57
221 222 5.319043 ACAACCTGGGTCTTCTATTTCAA 57.681 39.130 0.00 0.00 0.00 2.69
222 223 4.993705 ACAACCTGGGTCTTCTATTTCA 57.006 40.909 0.00 0.00 0.00 2.69
223 224 6.318900 CCATTACAACCTGGGTCTTCTATTTC 59.681 42.308 0.00 0.00 0.00 2.17
224 225 6.011981 TCCATTACAACCTGGGTCTTCTATTT 60.012 38.462 0.00 0.00 33.13 1.40
225 226 5.491078 TCCATTACAACCTGGGTCTTCTATT 59.509 40.000 0.00 0.00 33.13 1.73
226 227 5.036916 TCCATTACAACCTGGGTCTTCTAT 58.963 41.667 0.00 0.00 33.13 1.98
227 228 4.431378 TCCATTACAACCTGGGTCTTCTA 58.569 43.478 0.00 0.00 33.13 2.10
228 229 3.256704 TCCATTACAACCTGGGTCTTCT 58.743 45.455 0.00 0.00 33.13 2.85
229 230 3.713826 TCCATTACAACCTGGGTCTTC 57.286 47.619 0.00 0.00 33.13 2.87
230 231 3.139397 TGTTCCATTACAACCTGGGTCTT 59.861 43.478 0.00 0.00 33.13 3.01
231 232 2.714250 TGTTCCATTACAACCTGGGTCT 59.286 45.455 0.00 0.00 33.13 3.85
232 233 3.081804 CTGTTCCATTACAACCTGGGTC 58.918 50.000 0.00 0.00 33.13 4.46
233 234 2.714250 TCTGTTCCATTACAACCTGGGT 59.286 45.455 0.00 0.00 33.13 4.51
234 235 3.081804 GTCTGTTCCATTACAACCTGGG 58.918 50.000 0.00 0.00 33.13 4.45
235 236 3.750371 TGTCTGTTCCATTACAACCTGG 58.250 45.455 0.00 0.00 0.00 4.45
236 237 5.278463 CCTTTGTCTGTTCCATTACAACCTG 60.278 44.000 0.00 0.00 31.92 4.00
237 238 4.827284 CCTTTGTCTGTTCCATTACAACCT 59.173 41.667 0.00 0.00 31.92 3.50
238 239 4.583073 ACCTTTGTCTGTTCCATTACAACC 59.417 41.667 0.00 0.00 31.92 3.77
239 240 5.767816 ACCTTTGTCTGTTCCATTACAAC 57.232 39.130 0.00 0.00 31.92 3.32
240 241 5.888724 TCAACCTTTGTCTGTTCCATTACAA 59.111 36.000 0.00 0.00 0.00 2.41
241 242 5.441500 TCAACCTTTGTCTGTTCCATTACA 58.558 37.500 0.00 0.00 0.00 2.41
242 243 6.262273 TCTTCAACCTTTGTCTGTTCCATTAC 59.738 38.462 0.00 0.00 0.00 1.89
243 244 6.361433 TCTTCAACCTTTGTCTGTTCCATTA 58.639 36.000 0.00 0.00 0.00 1.90
244 245 5.200483 TCTTCAACCTTTGTCTGTTCCATT 58.800 37.500 0.00 0.00 0.00 3.16
245 246 4.792068 TCTTCAACCTTTGTCTGTTCCAT 58.208 39.130 0.00 0.00 0.00 3.41
246 247 4.229304 TCTTCAACCTTTGTCTGTTCCA 57.771 40.909 0.00 0.00 0.00 3.53
247 248 4.881850 TCTTCTTCAACCTTTGTCTGTTCC 59.118 41.667 0.00 0.00 0.00 3.62
248 249 5.220873 GGTCTTCTTCAACCTTTGTCTGTTC 60.221 44.000 0.00 0.00 32.54 3.18
249 250 4.640647 GGTCTTCTTCAACCTTTGTCTGTT 59.359 41.667 0.00 0.00 32.54 3.16
250 251 4.200092 GGTCTTCTTCAACCTTTGTCTGT 58.800 43.478 0.00 0.00 32.54 3.41
251 252 4.199310 TGGTCTTCTTCAACCTTTGTCTG 58.801 43.478 0.00 0.00 36.47 3.51
252 253 4.455606 CTGGTCTTCTTCAACCTTTGTCT 58.544 43.478 0.00 0.00 36.47 3.41
253 254 3.003793 GCTGGTCTTCTTCAACCTTTGTC 59.996 47.826 0.00 0.00 36.47 3.18
254 255 2.952310 GCTGGTCTTCTTCAACCTTTGT 59.048 45.455 0.00 0.00 36.47 2.83
255 256 2.951642 TGCTGGTCTTCTTCAACCTTTG 59.048 45.455 0.00 0.00 36.47 2.77
256 257 3.217626 CTGCTGGTCTTCTTCAACCTTT 58.782 45.455 0.00 0.00 36.47 3.11
257 258 2.487986 CCTGCTGGTCTTCTTCAACCTT 60.488 50.000 0.51 0.00 36.47 3.50
258 259 1.072965 CCTGCTGGTCTTCTTCAACCT 59.927 52.381 0.51 0.00 36.47 3.50
259 260 1.072331 TCCTGCTGGTCTTCTTCAACC 59.928 52.381 9.73 0.00 36.03 3.77
260 261 2.550830 TCCTGCTGGTCTTCTTCAAC 57.449 50.000 9.73 0.00 34.23 3.18
261 262 2.224621 CCTTCCTGCTGGTCTTCTTCAA 60.225 50.000 9.73 0.00 34.23 2.69
262 263 1.349026 CCTTCCTGCTGGTCTTCTTCA 59.651 52.381 9.73 0.00 34.23 3.02
263 264 1.339535 CCCTTCCTGCTGGTCTTCTTC 60.340 57.143 9.73 0.00 34.23 2.87
264 265 0.695347 CCCTTCCTGCTGGTCTTCTT 59.305 55.000 9.73 0.00 34.23 2.52
265 266 0.474660 ACCCTTCCTGCTGGTCTTCT 60.475 55.000 9.73 0.00 34.23 2.85
266 267 0.322008 CACCCTTCCTGCTGGTCTTC 60.322 60.000 9.73 0.00 34.23 2.87
267 268 1.062488 ACACCCTTCCTGCTGGTCTT 61.062 55.000 9.73 0.00 34.23 3.01
268 269 1.462238 ACACCCTTCCTGCTGGTCT 60.462 57.895 9.73 0.00 34.23 3.85
269 270 1.302832 CACACCCTTCCTGCTGGTC 60.303 63.158 9.73 0.00 34.23 4.02
270 271 2.839098 CACACCCTTCCTGCTGGT 59.161 61.111 9.73 0.00 34.23 4.00
271 272 2.674380 GCACACCCTTCCTGCTGG 60.674 66.667 2.58 2.58 0.00 4.85
272 273 1.673665 GAGCACACCCTTCCTGCTG 60.674 63.158 0.00 0.00 41.40 4.41
273 274 2.149383 TGAGCACACCCTTCCTGCT 61.149 57.895 0.00 0.00 44.04 4.24
274 275 1.968540 GTGAGCACACCCTTCCTGC 60.969 63.158 2.45 0.00 40.74 4.85
275 276 0.321122 GAGTGAGCACACCCTTCCTG 60.321 60.000 10.88 0.00 46.99 3.86
276 277 0.472734 AGAGTGAGCACACCCTTCCT 60.473 55.000 10.88 0.00 46.99 3.36
277 278 0.398318 AAGAGTGAGCACACCCTTCC 59.602 55.000 10.88 0.00 40.15 3.46
278 279 1.202698 ACAAGAGTGAGCACACCCTTC 60.203 52.381 8.04 1.34 41.78 3.46
279 280 0.839946 ACAAGAGTGAGCACACCCTT 59.160 50.000 10.88 7.97 43.86 3.95
280 281 0.839946 AACAAGAGTGAGCACACCCT 59.160 50.000 10.88 0.90 46.99 4.34
281 282 0.947244 CAACAAGAGTGAGCACACCC 59.053 55.000 10.88 0.00 46.99 4.61
282 283 1.869767 CTCAACAAGAGTGAGCACACC 59.130 52.381 10.88 2.87 46.99 4.16
293 294 5.877564 TGTAATGTGTGTCAACTCAACAAGA 59.122 36.000 0.00 0.00 33.76 3.02
294 295 6.117911 TGTAATGTGTGTCAACTCAACAAG 57.882 37.500 0.00 0.00 33.76 3.16
295 296 5.645929 ACTGTAATGTGTGTCAACTCAACAA 59.354 36.000 0.00 0.00 33.76 2.83
296 297 5.064579 CACTGTAATGTGTGTCAACTCAACA 59.935 40.000 0.00 0.00 33.76 3.33
297 298 5.293324 TCACTGTAATGTGTGTCAACTCAAC 59.707 40.000 0.00 0.00 38.90 3.18
298 299 5.423886 TCACTGTAATGTGTGTCAACTCAA 58.576 37.500 0.00 0.00 38.90 3.02
299 300 5.017294 TCACTGTAATGTGTGTCAACTCA 57.983 39.130 0.00 0.00 38.90 3.41
300 301 5.753438 TCTTCACTGTAATGTGTGTCAACTC 59.247 40.000 0.00 0.00 38.90 3.01
301 302 5.670485 TCTTCACTGTAATGTGTGTCAACT 58.330 37.500 0.00 0.00 38.90 3.16
302 303 5.984233 TCTTCACTGTAATGTGTGTCAAC 57.016 39.130 0.00 0.00 38.90 3.18
303 304 5.877564 TGTTCTTCACTGTAATGTGTGTCAA 59.122 36.000 0.00 0.00 38.90 3.18
304 305 5.423886 TGTTCTTCACTGTAATGTGTGTCA 58.576 37.500 0.00 0.00 38.90 3.58
305 306 5.984233 TGTTCTTCACTGTAATGTGTGTC 57.016 39.130 0.00 0.00 38.90 3.67
306 307 6.374333 AGTTTGTTCTTCACTGTAATGTGTGT 59.626 34.615 0.00 0.00 38.90 3.72
307 308 6.688385 CAGTTTGTTCTTCACTGTAATGTGTG 59.312 38.462 0.00 0.00 38.90 3.82
308 309 6.183360 CCAGTTTGTTCTTCACTGTAATGTGT 60.183 38.462 0.00 0.00 38.90 3.72
309 310 6.183360 ACCAGTTTGTTCTTCACTGTAATGTG 60.183 38.462 0.00 0.00 39.15 3.21
310 311 5.885912 ACCAGTTTGTTCTTCACTGTAATGT 59.114 36.000 0.00 0.00 0.00 2.71
311 312 6.377327 ACCAGTTTGTTCTTCACTGTAATG 57.623 37.500 0.00 0.00 0.00 1.90
312 313 5.531287 GGACCAGTTTGTTCTTCACTGTAAT 59.469 40.000 0.00 0.00 0.00 1.89
313 314 4.879545 GGACCAGTTTGTTCTTCACTGTAA 59.120 41.667 0.00 0.00 0.00 2.41
314 315 4.080807 TGGACCAGTTTGTTCTTCACTGTA 60.081 41.667 0.00 0.00 0.00 2.74
315 316 3.279434 GGACCAGTTTGTTCTTCACTGT 58.721 45.455 0.00 0.00 0.00 3.55
316 317 3.278574 TGGACCAGTTTGTTCTTCACTG 58.721 45.455 0.00 0.00 0.00 3.66
317 318 3.644966 TGGACCAGTTTGTTCTTCACT 57.355 42.857 0.00 0.00 0.00 3.41
318 319 3.882888 TCATGGACCAGTTTGTTCTTCAC 59.117 43.478 0.00 0.00 0.00 3.18
319 320 4.163441 TCATGGACCAGTTTGTTCTTCA 57.837 40.909 0.00 0.00 0.00 3.02
320 321 7.121168 TCAATATCATGGACCAGTTTGTTCTTC 59.879 37.037 0.00 0.00 0.00 2.87
321 322 6.947733 TCAATATCATGGACCAGTTTGTTCTT 59.052 34.615 0.00 0.00 0.00 2.52
322 323 6.484288 TCAATATCATGGACCAGTTTGTTCT 58.516 36.000 0.00 0.00 0.00 3.01
323 324 6.757897 TCAATATCATGGACCAGTTTGTTC 57.242 37.500 0.00 0.00 0.00 3.18
324 325 7.537596 TTTCAATATCATGGACCAGTTTGTT 57.462 32.000 0.00 0.00 0.00 2.83
325 326 7.722949 ATTTCAATATCATGGACCAGTTTGT 57.277 32.000 0.00 0.00 0.00 2.83
353 354 9.970395 AACATCCGTACAAAATCTATTATCGTA 57.030 29.630 0.00 0.00 0.00 3.43
354 355 8.882415 AACATCCGTACAAAATCTATTATCGT 57.118 30.769 0.00 0.00 0.00 3.73
367 368 9.409312 CGGTATAATATGTTAACATCCGTACAA 57.591 33.333 24.00 5.91 37.76 2.41
368 369 8.028354 CCGGTATAATATGTTAACATCCGTACA 58.972 37.037 28.16 13.60 37.76 2.90
369 370 8.243426 TCCGGTATAATATGTTAACATCCGTAC 58.757 37.037 28.16 22.36 37.76 3.67
370 371 8.347004 TCCGGTATAATATGTTAACATCCGTA 57.653 34.615 28.16 18.35 37.76 4.02
371 372 7.230849 TCCGGTATAATATGTTAACATCCGT 57.769 36.000 28.16 17.69 37.76 4.69
372 373 8.537049 TTTCCGGTATAATATGTTAACATCCG 57.463 34.615 25.76 25.76 37.76 4.18
373 374 8.943002 CCTTTCCGGTATAATATGTTAACATCC 58.057 37.037 24.00 16.22 37.76 3.51
374 375 9.498176 ACCTTTCCGGTATAATATGTTAACATC 57.502 33.333 24.00 9.03 46.73 3.06
375 376 9.280174 CACCTTTCCGGTATAATATGTTAACAT 57.720 33.333 23.80 23.80 46.94 2.71
376 377 8.484575 TCACCTTTCCGGTATAATATGTTAACA 58.515 33.333 11.41 11.41 46.94 2.41
377 378 8.891671 TCACCTTTCCGGTATAATATGTTAAC 57.108 34.615 0.00 0.00 46.94 2.01
378 379 9.902684 TTTCACCTTTCCGGTATAATATGTTAA 57.097 29.630 0.00 0.00 46.94 2.01
379 380 9.550406 CTTTCACCTTTCCGGTATAATATGTTA 57.450 33.333 0.00 0.00 46.94 2.41
380 381 8.269317 TCTTTCACCTTTCCGGTATAATATGTT 58.731 33.333 0.00 0.00 46.94 2.71
381 382 7.798071 TCTTTCACCTTTCCGGTATAATATGT 58.202 34.615 0.00 0.00 46.94 2.29
382 383 8.848474 ATCTTTCACCTTTCCGGTATAATATG 57.152 34.615 0.00 0.00 46.94 1.78
384 385 8.591072 CCTATCTTTCACCTTTCCGGTATAATA 58.409 37.037 0.00 0.00 46.94 0.98
385 386 7.291651 TCCTATCTTTCACCTTTCCGGTATAAT 59.708 37.037 0.00 0.00 46.94 1.28
386 387 6.612456 TCCTATCTTTCACCTTTCCGGTATAA 59.388 38.462 0.00 0.00 46.94 0.98
387 388 6.138263 TCCTATCTTTCACCTTTCCGGTATA 58.862 40.000 0.00 0.00 46.94 1.47
388 389 4.966805 TCCTATCTTTCACCTTTCCGGTAT 59.033 41.667 0.00 0.00 46.94 2.73
389 390 4.355549 TCCTATCTTTCACCTTTCCGGTA 58.644 43.478 0.00 0.00 46.94 4.02
391 392 3.906720 TCCTATCTTTCACCTTTCCGG 57.093 47.619 0.00 0.00 39.35 5.14
392 393 5.914033 TGTATCCTATCTTTCACCTTTCCG 58.086 41.667 0.00 0.00 0.00 4.30
393 394 9.442047 CATATGTATCCTATCTTTCACCTTTCC 57.558 37.037 0.00 0.00 0.00 3.13
477 478 9.753674 TGAGGAAAACAAATATCTCCACTTTAT 57.246 29.630 0.00 0.00 0.00 1.40
478 479 9.010029 GTGAGGAAAACAAATATCTCCACTTTA 57.990 33.333 0.00 0.00 0.00 1.85
479 480 7.725844 AGTGAGGAAAACAAATATCTCCACTTT 59.274 33.333 0.00 0.00 0.00 2.66
480 481 7.234355 AGTGAGGAAAACAAATATCTCCACTT 58.766 34.615 0.00 0.00 0.00 3.16
481 482 6.784031 AGTGAGGAAAACAAATATCTCCACT 58.216 36.000 0.00 0.00 0.00 4.00
482 483 6.881602 AGAGTGAGGAAAACAAATATCTCCAC 59.118 38.462 0.00 0.00 0.00 4.02
483 484 7.020827 AGAGTGAGGAAAACAAATATCTCCA 57.979 36.000 0.00 0.00 0.00 3.86
484 485 7.607991 TCAAGAGTGAGGAAAACAAATATCTCC 59.392 37.037 0.00 0.00 0.00 3.71
485 486 8.553459 TCAAGAGTGAGGAAAACAAATATCTC 57.447 34.615 0.00 0.00 0.00 2.75
486 487 8.558973 CTCAAGAGTGAGGAAAACAAATATCT 57.441 34.615 0.00 0.00 46.55 1.98
899 900 6.796426 TCTTCTGGAATCGTATAACTGTCAG 58.204 40.000 0.00 0.00 0.00 3.51
982 983 7.327975 ACAATCATACGTAGATGAGTTTTGGA 58.672 34.615 13.63 0.00 39.18 3.53
1049 1050 4.019792 ACAGCATCACATTTGACACCTA 57.980 40.909 0.00 0.00 33.38 3.08
1267 1268 0.745845 CCCTCACCCGAGAATTGCAG 60.746 60.000 0.00 0.00 42.34 4.41
1950 2852 1.134907 CCCACCGCGAATACACTAAGT 60.135 52.381 8.23 0.00 0.00 2.24
1961 2863 0.174845 CTAAGATTCACCCACCGCGA 59.825 55.000 8.23 0.00 0.00 5.87
2222 3491 4.517285 CTTGCTGTCCCTAAGCTGATAAA 58.483 43.478 0.00 0.00 41.42 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.