Multiple sequence alignment - TraesCS2B01G263600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G263600 chr2B 100.000 6951 0 0 1 6951 354881222 354874272 0.000000e+00 12837.0
1 TraesCS2B01G263600 chr2B 83.784 185 26 4 6562 6743 154925203 154925386 9.270000e-39 172.0
2 TraesCS2B01G263600 chr2B 93.443 61 4 0 6504 6564 354874481 354874421 2.670000e-14 91.6
3 TraesCS2B01G263600 chr2B 93.443 61 4 0 6742 6802 354874719 354874659 2.670000e-14 91.6
4 TraesCS2B01G263600 chr2A 96.817 5750 114 24 832 6541 361380435 361386155 0.000000e+00 9540.0
5 TraesCS2B01G263600 chr2A 95.644 2548 100 6 2515 5058 65246876 65244336 0.000000e+00 4080.0
6 TraesCS2B01G263600 chr2A 92.609 1150 39 13 5043 6169 65244259 65243133 0.000000e+00 1611.0
7 TraesCS2B01G263600 chr2A 86.622 1196 94 30 832 2012 65295149 65294005 0.000000e+00 1262.0
8 TraesCS2B01G263600 chr2A 89.204 741 51 11 1 716 361377774 361378510 0.000000e+00 898.0
9 TraesCS2B01G263600 chr2A 92.141 369 24 4 2096 2462 65294002 65293637 3.720000e-142 516.0
10 TraesCS2B01G263600 chr2A 87.931 174 21 0 6778 6951 361386098 361386271 9.140000e-49 206.0
11 TraesCS2B01G263600 chr2A 80.000 290 34 11 6171 6440 65241591 65241306 7.120000e-45 193.0
12 TraesCS2B01G263600 chr2A 95.652 69 3 0 2457 2525 65271139 65271071 2.050000e-20 111.0
13 TraesCS2B01G263600 chr2D 97.605 5177 92 11 832 5988 294472776 294477940 0.000000e+00 8844.0
14 TraesCS2B01G263600 chr2D 94.003 4402 188 35 2096 6440 63626370 63621988 0.000000e+00 6597.0
15 TraesCS2B01G263600 chr2D 88.042 853 61 14 2 815 294471944 294472794 0.000000e+00 972.0
16 TraesCS2B01G263600 chr2D 95.629 572 19 3 1446 2012 63626943 63626373 0.000000e+00 913.0
17 TraesCS2B01G263600 chr2D 93.796 548 19 5 832 1376 63627477 63626942 0.000000e+00 809.0
18 TraesCS2B01G263600 chr2D 93.750 384 13 6 6014 6390 294477939 294478318 3.640000e-157 566.0
19 TraesCS2B01G263600 chr2D 98.077 156 3 0 6386 6541 294478617 294478772 8.880000e-69 272.0
20 TraesCS2B01G263600 chr2D 90.805 174 16 0 6778 6951 294478715 294478888 4.190000e-57 233.0
21 TraesCS2B01G263600 chr2D 98.889 90 1 0 2009 2098 643235819 643235908 2.010000e-35 161.0
22 TraesCS2B01G263600 chr2D 95.522 67 3 0 6386 6452 294478430 294478496 2.650000e-19 108.0
23 TraesCS2B01G263600 chr2D 97.368 38 1 0 6742 6779 294478735 294478772 1.620000e-06 65.8
24 TraesCS2B01G263600 chr3A 83.386 638 70 16 1 616 7204502 7203879 6.090000e-155 558.0
25 TraesCS2B01G263600 chr3A 86.391 169 17 5 6577 6741 729360750 729360584 5.540000e-41 180.0
26 TraesCS2B01G263600 chrUn 85.336 491 48 8 146 616 222087291 222087777 2.910000e-133 486.0
27 TraesCS2B01G263600 chr7A 82.837 571 66 17 71 616 669400063 669399500 3.770000e-132 483.0
28 TraesCS2B01G263600 chr1D 83.366 505 60 7 134 616 113599971 113599469 4.950000e-121 446.0
29 TraesCS2B01G263600 chr3B 83.015 471 50 14 171 616 611153300 611152835 3.910000e-107 399.0
30 TraesCS2B01G263600 chr3B 82.700 474 55 9 164 616 5054885 5055352 5.050000e-106 396.0
31 TraesCS2B01G263600 chr3B 82.489 474 56 9 164 616 4198471 4198938 2.350000e-104 390.0
32 TraesCS2B01G263600 chr3B 86.061 165 20 3 6579 6741 570037372 570037209 2.580000e-39 174.0
33 TraesCS2B01G263600 chr3B 97.872 94 2 0 2005 2098 200860776 200860683 5.580000e-36 163.0
34 TraesCS2B01G263600 chr3B 97.849 93 1 1 2013 2105 65214141 65214050 7.220000e-35 159.0
35 TraesCS2B01G263600 chr5D 82.456 456 54 12 183 616 504001103 504000652 6.580000e-100 375.0
36 TraesCS2B01G263600 chr5D 88.618 123 11 2 497 616 503878880 503878758 5.620000e-31 147.0
37 TraesCS2B01G263600 chr5D 90.179 112 7 2 2009 2119 334012303 334012195 7.270000e-30 143.0
38 TraesCS2B01G263600 chr1B 82.319 345 37 10 294 616 600906151 600905809 1.910000e-70 278.0
39 TraesCS2B01G263600 chr1B 78.212 358 49 14 282 613 14558951 14558597 1.180000e-47 202.0
40 TraesCS2B01G263600 chr1B 85.714 182 23 3 6562 6741 276266877 276266697 9.200000e-44 189.0
41 TraesCS2B01G263600 chr5A 88.462 156 16 2 6587 6741 708539820 708539974 3.310000e-43 187.0
42 TraesCS2B01G263600 chr1A 86.747 166 18 3 6579 6741 157542342 157542178 1.540000e-41 182.0
43 TraesCS2B01G263600 chr1A 88.710 62 5 1 6890 6951 565327206 565327147 2.690000e-09 75.0
44 TraesCS2B01G263600 chr6D 84.530 181 23 4 6563 6741 335039126 335038949 2.580000e-39 174.0
45 TraesCS2B01G263600 chr4A 85.714 168 21 3 6574 6741 719839742 719839578 2.580000e-39 174.0
46 TraesCS2B01G263600 chr3D 85.294 170 18 5 6574 6741 568100047 568099883 1.200000e-37 169.0
47 TraesCS2B01G263600 chr3D 83.582 67 11 0 420 486 596939055 596939121 5.820000e-06 63.9
48 TraesCS2B01G263600 chr5B 96.809 94 2 1 2006 2099 184285258 184285350 9.330000e-34 156.0
49 TraesCS2B01G263600 chr5B 96.809 94 1 2 2010 2103 264876389 264876298 9.330000e-34 156.0
50 TraesCS2B01G263600 chr7B 89.655 116 8 4 1988 2100 547965496 547965610 2.020000e-30 145.0
51 TraesCS2B01G263600 chr7B 96.875 32 1 0 6898 6929 720980286 720980317 4.000000e-03 54.7
52 TraesCS2B01G263600 chr6B 96.078 51 2 0 86 136 15376298 15376348 4.470000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G263600 chr2B 354874272 354881222 6950 True 12837.000000 12837 100.000000 1 6951 1 chr2B.!!$R1 6950
1 TraesCS2B01G263600 chr2A 361377774 361386271 8497 False 3548.000000 9540 91.317333 1 6951 3 chr2A.!!$F1 6950
2 TraesCS2B01G263600 chr2A 65241306 65246876 5570 True 1961.333333 4080 89.417667 2515 6440 3 chr2A.!!$R2 3925
3 TraesCS2B01G263600 chr2A 65293637 65295149 1512 True 889.000000 1262 89.381500 832 2462 2 chr2A.!!$R3 1630
4 TraesCS2B01G263600 chr2D 63621988 63627477 5489 True 2773.000000 6597 94.476000 832 6440 3 chr2D.!!$R1 5608
5 TraesCS2B01G263600 chr2D 294471944 294478888 6944 False 1580.114286 8844 94.452714 2 6951 7 chr2D.!!$F2 6949
6 TraesCS2B01G263600 chr3A 7203879 7204502 623 True 558.000000 558 83.386000 1 616 1 chr3A.!!$R1 615
7 TraesCS2B01G263600 chr7A 669399500 669400063 563 True 483.000000 483 82.837000 71 616 1 chr7A.!!$R1 545
8 TraesCS2B01G263600 chr1D 113599469 113599971 502 True 446.000000 446 83.366000 134 616 1 chr1D.!!$R1 482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 419 0.030638 CAAAGCAGGTGGTGAAACGG 59.969 55.000 0.00 0.0 38.12 4.44 F
796 2699 0.404426 GGCTGGGGTTTAACTCCACT 59.596 55.000 13.41 0.0 42.04 4.00 F
1006 2927 1.005037 AGACGAGTCGCAATGCCAA 60.005 52.632 13.59 0.0 34.09 4.52 F
1007 2928 1.132640 GACGAGTCGCAATGCCAAC 59.867 57.895 13.59 0.0 0.00 3.77 F
1009 2930 1.133253 CGAGTCGCAATGCCAACAG 59.867 57.895 0.00 0.0 0.00 3.16 F
2157 4167 1.691434 CTATGTTCTCCTCTCCTGGCC 59.309 57.143 0.00 0.0 0.00 5.36 F
3084 5101 0.681175 GCAAATTGGTTGGGCTGACT 59.319 50.000 0.00 0.0 37.73 3.41 F
4082 6101 0.037326 CACGCCTGTGGAGAAGCTAA 60.037 55.000 0.00 0.0 42.59 3.09 F
4262 6282 4.626042 TGAAAGCGGTGCATTTTTAACAT 58.374 34.783 0.00 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2157 4167 2.148446 TCAAATGCAAGGATCCCAGG 57.852 50.000 8.55 0.0 0.00 4.45 R
2695 4711 4.385754 GGATCAAATTCTGCCTTAGGGTCT 60.386 45.833 0.00 0.0 34.45 3.85 R
2903 4919 3.456277 ACCATCTTAGGTTCATCCTCCAC 59.544 47.826 0.00 0.0 44.42 4.02 R
3037 5053 5.871396 AGGTTAAGAGTCAAGACTTCACA 57.129 39.130 3.96 0.0 42.66 3.58 R
3077 5094 5.985530 AGAAAAATGCTTTAAACAGTCAGCC 59.014 36.000 0.00 0.0 0.00 4.85 R
3978 5997 2.079925 CAGTTTCCTTGCTCCAGCTAC 58.920 52.381 0.00 0.0 42.66 3.58 R
4390 6410 1.423161 GCTCCAGCCCCTATCTCAAAT 59.577 52.381 0.00 0.0 34.31 2.32 R
5307 7437 1.024271 CAGGAACAACCCATATGCCG 58.976 55.000 0.00 0.0 40.05 5.69 R
6110 8282 1.202698 AGGGATTAGAGCCATCGCAAC 60.203 52.381 0.00 0.0 36.33 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 116 4.430441 ACAATAGAGAAGGAGACAAGGGT 58.570 43.478 0.00 0.00 0.00 4.34
163 179 2.363795 CTAGAGCACCACCCCGGA 60.364 66.667 0.73 0.00 38.63 5.14
207 223 0.597568 CAAGCATGGCAAAGTCCGAA 59.402 50.000 0.00 0.00 0.00 4.30
218 234 3.866449 GCAAAGTCCGAATTGAGAGGAGT 60.866 47.826 0.00 0.00 39.23 3.85
358 375 5.106237 GCTCTTGCAGAAGACTTGATGATTT 60.106 40.000 0.00 0.00 39.41 2.17
402 419 0.030638 CAAAGCAGGTGGTGAAACGG 59.969 55.000 0.00 0.00 38.12 4.44
415 432 3.562557 GGTGAAACGGCACTAAAAGAGAA 59.437 43.478 0.00 0.00 38.12 2.87
517 554 6.986817 TGGTGCAGATAGATTAGCTAAGTTTC 59.013 38.462 12.54 4.94 31.66 2.78
533 570 5.520376 AAGTTTCCAAACACTCTTGATGG 57.480 39.130 5.03 0.00 41.30 3.51
541 578 0.467384 CACTCTTGATGGGAGGCGAT 59.533 55.000 0.00 0.00 35.34 4.58
699 743 4.438472 GCTTGGAACGGAGTACTAGTACTG 60.438 50.000 34.67 24.36 45.00 2.74
746 2649 3.394836 GAAGCGCCCCCTCTCACT 61.395 66.667 2.29 0.00 0.00 3.41
779 2682 1.137825 CTCGTCTCCTCTTCACGGC 59.862 63.158 0.00 0.00 34.24 5.68
796 2699 0.404426 GGCTGGGGTTTAACTCCACT 59.596 55.000 13.41 0.00 42.04 4.00
798 2701 2.040679 GGCTGGGGTTTAACTCCACTAA 59.959 50.000 13.41 0.00 42.04 2.24
799 2702 3.308904 GGCTGGGGTTTAACTCCACTAAT 60.309 47.826 13.41 0.00 42.04 1.73
800 2703 4.341487 GCTGGGGTTTAACTCCACTAATT 58.659 43.478 13.41 0.00 42.04 1.40
801 2704 4.398358 GCTGGGGTTTAACTCCACTAATTC 59.602 45.833 13.41 0.00 42.04 2.17
802 2705 4.581868 TGGGGTTTAACTCCACTAATTCG 58.418 43.478 13.41 0.00 42.04 3.34
803 2706 4.041938 TGGGGTTTAACTCCACTAATTCGT 59.958 41.667 13.41 0.00 42.04 3.85
804 2707 4.393990 GGGGTTTAACTCCACTAATTCGTG 59.606 45.833 9.47 3.17 39.07 4.35
805 2708 5.240121 GGGTTTAACTCCACTAATTCGTGA 58.760 41.667 11.46 0.00 37.06 4.35
806 2709 5.121298 GGGTTTAACTCCACTAATTCGTGAC 59.879 44.000 11.46 0.38 37.06 3.67
807 2710 5.121298 GGTTTAACTCCACTAATTCGTGACC 59.879 44.000 11.46 5.59 37.06 4.02
808 2711 3.329929 AACTCCACTAATTCGTGACCC 57.670 47.619 11.46 0.00 37.06 4.46
809 2712 1.203994 ACTCCACTAATTCGTGACCCG 59.796 52.381 11.46 0.00 37.06 5.28
810 2713 1.203994 CTCCACTAATTCGTGACCCGT 59.796 52.381 11.46 0.00 37.06 5.28
811 2714 1.203052 TCCACTAATTCGTGACCCGTC 59.797 52.381 11.46 0.00 37.06 4.79
812 2715 1.636988 CACTAATTCGTGACCCGTCC 58.363 55.000 4.11 0.00 37.06 4.79
813 2716 1.203994 CACTAATTCGTGACCCGTCCT 59.796 52.381 4.11 0.00 37.06 3.85
814 2717 1.897802 ACTAATTCGTGACCCGTCCTT 59.102 47.619 0.00 0.00 37.94 3.36
815 2718 3.091545 ACTAATTCGTGACCCGTCCTTA 58.908 45.455 0.00 0.00 37.94 2.69
816 2719 2.667473 AATTCGTGACCCGTCCTTAG 57.333 50.000 0.00 0.00 37.94 2.18
817 2720 1.843368 ATTCGTGACCCGTCCTTAGA 58.157 50.000 0.00 0.00 37.94 2.10
818 2721 1.843368 TTCGTGACCCGTCCTTAGAT 58.157 50.000 0.00 0.00 37.94 1.98
819 2722 1.386533 TCGTGACCCGTCCTTAGATC 58.613 55.000 0.00 0.00 37.94 2.75
820 2723 1.100510 CGTGACCCGTCCTTAGATCA 58.899 55.000 0.00 0.00 0.00 2.92
821 2724 1.475280 CGTGACCCGTCCTTAGATCAA 59.525 52.381 0.00 0.00 0.00 2.57
822 2725 2.094390 CGTGACCCGTCCTTAGATCAAA 60.094 50.000 0.00 0.00 0.00 2.69
823 2726 3.615592 CGTGACCCGTCCTTAGATCAAAA 60.616 47.826 0.00 0.00 0.00 2.44
824 2727 4.320870 GTGACCCGTCCTTAGATCAAAAA 58.679 43.478 0.00 0.00 0.00 1.94
825 2728 4.941873 GTGACCCGTCCTTAGATCAAAAAT 59.058 41.667 0.00 0.00 0.00 1.82
826 2729 6.110707 GTGACCCGTCCTTAGATCAAAAATA 58.889 40.000 0.00 0.00 0.00 1.40
827 2730 6.596497 GTGACCCGTCCTTAGATCAAAAATAA 59.404 38.462 0.00 0.00 0.00 1.40
828 2731 7.282450 GTGACCCGTCCTTAGATCAAAAATAAT 59.718 37.037 0.00 0.00 0.00 1.28
829 2732 8.487848 TGACCCGTCCTTAGATCAAAAATAATA 58.512 33.333 0.00 0.00 0.00 0.98
830 2733 9.333724 GACCCGTCCTTAGATCAAAAATAATAA 57.666 33.333 0.00 0.00 0.00 1.40
940 2852 1.384191 GCCTGTGGAGGATTTGGGT 59.616 57.895 0.00 0.00 42.93 4.51
1004 2925 2.508891 CGAGACGAGTCGCAATGCC 61.509 63.158 13.59 0.00 32.22 4.40
1005 2926 1.446099 GAGACGAGTCGCAATGCCA 60.446 57.895 13.59 0.00 34.09 4.92
1006 2927 1.005037 AGACGAGTCGCAATGCCAA 60.005 52.632 13.59 0.00 34.09 4.52
1007 2928 1.132640 GACGAGTCGCAATGCCAAC 59.867 57.895 13.59 0.00 0.00 3.77
1008 2929 1.565156 GACGAGTCGCAATGCCAACA 61.565 55.000 13.59 0.00 0.00 3.33
1009 2930 1.133253 CGAGTCGCAATGCCAACAG 59.867 57.895 0.00 0.00 0.00 3.16
1176 3097 4.147449 TGCCAGCTCGACATCCCG 62.147 66.667 0.00 0.00 0.00 5.14
1235 3156 4.821589 GAAGGACGCCGAGCAGGG 62.822 72.222 0.00 0.00 41.48 4.45
1712 3718 4.688879 TCAGTAAGAAGGTGTGCAATTACG 59.311 41.667 0.00 0.00 0.00 3.18
2157 4167 1.691434 CTATGTTCTCCTCTCCTGGCC 59.309 57.143 0.00 0.00 0.00 5.36
2190 4200 3.184541 GCATTTGATGGCTAGCTTGTTG 58.815 45.455 15.72 5.11 0.00 3.33
2207 4217 7.530010 AGCTTGTTGTTGTAGTGCATAATTAG 58.470 34.615 0.00 0.00 0.00 1.73
2903 4919 2.159517 GCAGTTCTTATTCCTTGTGCGG 60.160 50.000 0.00 0.00 0.00 5.69
3037 5053 4.835615 AGGTCAGTACAGAGTCAGTGATTT 59.164 41.667 0.00 0.00 0.00 2.17
3077 5094 4.335400 ACCTTTACAGCAAATTGGTTGG 57.665 40.909 1.43 0.00 37.73 3.77
3084 5101 0.681175 GCAAATTGGTTGGGCTGACT 59.319 50.000 0.00 0.00 37.73 3.41
3751 5770 4.665833 TCTCCTTTGTTCTTTCTGTCGA 57.334 40.909 0.00 0.00 0.00 4.20
4082 6101 0.037326 CACGCCTGTGGAGAAGCTAA 60.037 55.000 0.00 0.00 42.59 3.09
4262 6282 4.626042 TGAAAGCGGTGCATTTTTAACAT 58.374 34.783 0.00 0.00 0.00 2.71
4390 6410 9.658799 CTCCTAGAAGTCAATAATGAGTTTGAA 57.341 33.333 2.42 0.00 46.72 2.69
5307 7437 7.752686 GCTTGGTTTTGTTCTAGAATTGATCTC 59.247 37.037 8.75 0.00 39.71 2.75
5398 7536 9.959721 AGTTCCTTTATGTGTAAGACAACATAT 57.040 29.630 0.00 0.00 38.36 1.78
5468 7607 6.260936 CCGGAAATGCTTCTACATATCTTGTT 59.739 38.462 0.00 0.00 39.87 2.83
5587 7731 0.108520 GTTCATTCTGTCCGGCGGTA 60.109 55.000 27.32 15.33 0.00 4.02
5653 7797 1.830477 AGGTCAGCTTTGCCAAACAAA 59.170 42.857 0.00 0.00 46.01 2.83
5877 8021 3.133721 AGAGATCAAGGTGAATCTTCCCG 59.866 47.826 0.00 0.00 0.00 5.14
5936 8080 0.947244 GGAATGGCCTAACGCATCTG 59.053 55.000 3.32 0.00 40.31 2.90
5967 8111 0.035739 TGAGTTTGGGCGGAGGTAAC 59.964 55.000 0.00 0.00 0.00 2.50
6110 8282 1.300233 GCTGCTCCGAACCTATCCG 60.300 63.158 0.00 0.00 0.00 4.18
6241 9960 2.125512 CCTCGAGCAAACGGAGGG 60.126 66.667 6.99 0.00 31.88 4.30
6273 10005 1.033574 GTTGATCGATCGGTCTCCCT 58.966 55.000 27.39 0.00 0.00 4.20
6319 10051 0.465824 CTCAGGATCGTAGGTCCCGT 60.466 60.000 0.00 0.00 36.36 5.28
6348 10080 3.126879 CACACACCATGCCGCGAT 61.127 61.111 8.23 0.00 0.00 4.58
6349 10081 2.359850 ACACACCATGCCGCGATT 60.360 55.556 8.23 0.00 0.00 3.34
6350 10082 1.971167 ACACACCATGCCGCGATTT 60.971 52.632 8.23 0.00 0.00 2.17
6351 10083 1.212490 CACACCATGCCGCGATTTT 59.788 52.632 8.23 0.00 0.00 1.82
6352 10084 0.388391 CACACCATGCCGCGATTTTT 60.388 50.000 8.23 0.00 0.00 1.94
6529 10590 2.279851 CCACTCGTGGTCGCAACA 60.280 61.111 7.93 0.00 45.53 3.33
6530 10591 2.594962 CCACTCGTGGTCGCAACAC 61.595 63.158 7.93 0.00 45.53 3.32
6531 10592 2.279918 ACTCGTGGTCGCAACACC 60.280 61.111 0.00 0.00 35.46 4.16
6532 10593 3.403057 CTCGTGGTCGCAACACCG 61.403 66.667 0.00 0.00 39.62 4.94
6533 10594 4.210093 TCGTGGTCGCAACACCGT 62.210 61.111 0.00 0.00 39.62 4.83
6534 10595 3.995669 CGTGGTCGCAACACCGTG 61.996 66.667 0.00 0.00 39.62 4.94
6535 10596 3.645975 GTGGTCGCAACACCGTGG 61.646 66.667 3.03 0.00 39.62 4.94
6536 10597 4.920112 TGGTCGCAACACCGTGGG 62.920 66.667 3.03 0.00 39.62 4.61
6537 10598 4.922026 GGTCGCAACACCGTGGGT 62.922 66.667 3.03 0.00 35.62 4.51
6538 10599 2.898343 GTCGCAACACCGTGGGTT 60.898 61.111 3.03 0.00 31.02 4.11
6539 10600 2.897846 TCGCAACACCGTGGGTTG 60.898 61.111 12.88 12.88 46.41 3.77
6540 10601 3.206246 CGCAACACCGTGGGTTGT 61.206 61.111 16.85 0.51 45.64 3.32
6541 10602 2.766400 CGCAACACCGTGGGTTGTT 61.766 57.895 16.85 5.83 45.64 2.83
6542 10603 1.226831 GCAACACCGTGGGTTGTTG 60.227 57.895 16.85 14.70 45.64 3.33
6543 10604 1.435515 CAACACCGTGGGTTGTTGG 59.564 57.895 12.29 0.00 40.48 3.77
6544 10605 2.419739 AACACCGTGGGTTGTTGGC 61.420 57.895 3.03 0.00 31.02 4.52
6545 10606 3.601685 CACCGTGGGTTGTTGGCC 61.602 66.667 0.00 0.00 31.02 5.36
6546 10607 4.130554 ACCGTGGGTTGTTGGCCA 62.131 61.111 0.00 0.00 27.29 5.36
6547 10608 2.600173 CCGTGGGTTGTTGGCCAT 60.600 61.111 6.09 0.00 0.00 4.40
6548 10609 2.650196 CGTGGGTTGTTGGCCATG 59.350 61.111 6.09 0.00 0.00 3.66
6549 10610 1.900981 CGTGGGTTGTTGGCCATGA 60.901 57.895 6.09 0.00 0.00 3.07
6550 10611 1.250154 CGTGGGTTGTTGGCCATGAT 61.250 55.000 6.09 0.00 0.00 2.45
6551 10612 0.975887 GTGGGTTGTTGGCCATGATT 59.024 50.000 6.09 0.00 0.00 2.57
6552 10613 1.347378 GTGGGTTGTTGGCCATGATTT 59.653 47.619 6.09 0.00 0.00 2.17
6553 10614 1.347050 TGGGTTGTTGGCCATGATTTG 59.653 47.619 6.09 0.00 0.00 2.32
6554 10615 1.347378 GGGTTGTTGGCCATGATTTGT 59.653 47.619 6.09 0.00 0.00 2.83
6555 10616 2.612721 GGGTTGTTGGCCATGATTTGTC 60.613 50.000 6.09 0.00 0.00 3.18
6556 10617 2.036992 GGTTGTTGGCCATGATTTGTCA 59.963 45.455 6.09 0.00 0.00 3.58
6557 10618 3.306919 GGTTGTTGGCCATGATTTGTCAT 60.307 43.478 6.09 0.00 0.00 3.06
6558 10619 3.872511 TGTTGGCCATGATTTGTCATC 57.127 42.857 6.09 0.00 0.00 2.92
6559 10620 2.164017 TGTTGGCCATGATTTGTCATCG 59.836 45.455 6.09 0.00 0.00 3.84
6560 10621 0.740149 TGGCCATGATTTGTCATCGC 59.260 50.000 0.00 0.27 34.28 4.58
6561 10622 0.740149 GGCCATGATTTGTCATCGCA 59.260 50.000 0.00 0.00 36.23 5.10
6562 10623 1.134753 GGCCATGATTTGTCATCGCAA 59.865 47.619 0.00 0.00 36.23 4.85
6563 10624 2.187707 GCCATGATTTGTCATCGCAAC 58.812 47.619 0.00 0.00 34.97 4.17
6564 10625 2.159338 GCCATGATTTGTCATCGCAACT 60.159 45.455 0.00 0.00 34.97 3.16
6565 10626 3.431856 CCATGATTTGTCATCGCAACTG 58.568 45.455 0.00 0.00 0.00 3.16
6566 10627 3.119743 CCATGATTTGTCATCGCAACTGT 60.120 43.478 0.00 0.00 0.00 3.55
6567 10628 4.478699 CATGATTTGTCATCGCAACTGTT 58.521 39.130 0.00 0.00 0.00 3.16
6568 10629 4.566545 TGATTTGTCATCGCAACTGTTT 57.433 36.364 0.00 0.00 0.00 2.83
6569 10630 4.930963 TGATTTGTCATCGCAACTGTTTT 58.069 34.783 0.00 0.00 0.00 2.43
6570 10631 6.066054 TGATTTGTCATCGCAACTGTTTTA 57.934 33.333 0.00 0.00 0.00 1.52
6571 10632 6.499172 TGATTTGTCATCGCAACTGTTTTAA 58.501 32.000 0.00 0.00 0.00 1.52
6572 10633 6.416455 TGATTTGTCATCGCAACTGTTTTAAC 59.584 34.615 0.00 0.00 0.00 2.01
6573 10634 5.493133 TTGTCATCGCAACTGTTTTAACT 57.507 34.783 0.00 0.00 0.00 2.24
6574 10635 6.606234 TTGTCATCGCAACTGTTTTAACTA 57.394 33.333 0.00 0.00 0.00 2.24
6575 10636 6.223138 TGTCATCGCAACTGTTTTAACTAG 57.777 37.500 0.00 0.00 0.00 2.57
6576 10637 5.986741 TGTCATCGCAACTGTTTTAACTAGA 59.013 36.000 0.00 0.00 0.00 2.43
6577 10638 6.145534 TGTCATCGCAACTGTTTTAACTAGAG 59.854 38.462 0.00 0.00 0.00 2.43
6578 10639 6.365247 GTCATCGCAACTGTTTTAACTAGAGA 59.635 38.462 0.00 0.00 0.00 3.10
6579 10640 6.926826 TCATCGCAACTGTTTTAACTAGAGAA 59.073 34.615 0.00 0.00 0.00 2.87
6580 10641 7.439955 TCATCGCAACTGTTTTAACTAGAGAAA 59.560 33.333 0.00 0.00 0.00 2.52
6581 10642 7.173863 TCGCAACTGTTTTAACTAGAGAAAG 57.826 36.000 0.00 0.00 0.00 2.62
6582 10643 6.982141 TCGCAACTGTTTTAACTAGAGAAAGA 59.018 34.615 0.00 0.00 0.00 2.52
6583 10644 7.169308 TCGCAACTGTTTTAACTAGAGAAAGAG 59.831 37.037 0.00 5.00 32.00 2.85
6584 10645 7.169308 CGCAACTGTTTTAACTAGAGAAAGAGA 59.831 37.037 15.54 0.00 30.75 3.10
6585 10646 8.827677 GCAACTGTTTTAACTAGAGAAAGAGAA 58.172 33.333 15.54 0.00 30.75 2.87
6595 10656 8.472007 AACTAGAGAAAGAGAAAGACAAGAGA 57.528 34.615 0.00 0.00 0.00 3.10
6596 10657 8.650143 ACTAGAGAAAGAGAAAGACAAGAGAT 57.350 34.615 0.00 0.00 0.00 2.75
6597 10658 9.747898 ACTAGAGAAAGAGAAAGACAAGAGATA 57.252 33.333 0.00 0.00 0.00 1.98
6599 10660 8.877864 AGAGAAAGAGAAAGACAAGAGATAGA 57.122 34.615 0.00 0.00 0.00 1.98
6600 10661 8.960591 AGAGAAAGAGAAAGACAAGAGATAGAG 58.039 37.037 0.00 0.00 0.00 2.43
6601 10662 8.877864 AGAAAGAGAAAGACAAGAGATAGAGA 57.122 34.615 0.00 0.00 0.00 3.10
6602 10663 9.479549 AGAAAGAGAAAGACAAGAGATAGAGAT 57.520 33.333 0.00 0.00 0.00 2.75
6603 10664 9.520204 GAAAGAGAAAGACAAGAGATAGAGATG 57.480 37.037 0.00 0.00 0.00 2.90
6604 10665 8.593945 AAGAGAAAGACAAGAGATAGAGATGT 57.406 34.615 0.00 0.00 0.00 3.06
6605 10666 9.693739 AAGAGAAAGACAAGAGATAGAGATGTA 57.306 33.333 0.00 0.00 0.00 2.29
6606 10667 9.693739 AGAGAAAGACAAGAGATAGAGATGTAA 57.306 33.333 0.00 0.00 0.00 2.41
6610 10671 9.868277 AAAGACAAGAGATAGAGATGTAAAGTG 57.132 33.333 0.00 0.00 0.00 3.16
6611 10672 8.815565 AGACAAGAGATAGAGATGTAAAGTGA 57.184 34.615 0.00 0.00 0.00 3.41
6612 10673 9.249053 AGACAAGAGATAGAGATGTAAAGTGAA 57.751 33.333 0.00 0.00 0.00 3.18
6614 10675 9.814899 ACAAGAGATAGAGATGTAAAGTGAATG 57.185 33.333 0.00 0.00 0.00 2.67
6615 10676 9.258826 CAAGAGATAGAGATGTAAAGTGAATGG 57.741 37.037 0.00 0.00 0.00 3.16
6616 10677 8.546083 AGAGATAGAGATGTAAAGTGAATGGT 57.454 34.615 0.00 0.00 0.00 3.55
6617 10678 8.986991 AGAGATAGAGATGTAAAGTGAATGGTT 58.013 33.333 0.00 0.00 0.00 3.67
6623 10684 9.606631 AGAGATGTAAAGTGAATGGTTATTCTC 57.393 33.333 0.00 0.00 42.56 2.87
6624 10685 9.383519 GAGATGTAAAGTGAATGGTTATTCTCA 57.616 33.333 0.00 0.00 42.56 3.27
6625 10686 9.911788 AGATGTAAAGTGAATGGTTATTCTCAT 57.088 29.630 0.00 0.00 42.56 2.90
6628 10689 9.513906 TGTAAAGTGAATGGTTATTCTCATTGA 57.486 29.630 0.00 0.00 42.56 2.57
6629 10690 9.774742 GTAAAGTGAATGGTTATTCTCATTGAC 57.225 33.333 0.00 0.00 42.56 3.18
6630 10691 6.668541 AGTGAATGGTTATTCTCATTGACG 57.331 37.500 0.00 0.00 40.59 4.35
6631 10692 6.406370 AGTGAATGGTTATTCTCATTGACGA 58.594 36.000 0.00 0.00 40.59 4.20
6632 10693 7.050377 AGTGAATGGTTATTCTCATTGACGAT 58.950 34.615 0.00 0.00 40.59 3.73
6633 10694 7.011763 AGTGAATGGTTATTCTCATTGACGATG 59.988 37.037 0.00 0.00 40.59 3.84
6634 10695 6.260714 TGAATGGTTATTCTCATTGACGATGG 59.739 38.462 2.75 0.00 42.56 3.51
6635 10696 4.450976 TGGTTATTCTCATTGACGATGGG 58.549 43.478 2.75 0.00 37.60 4.00
6636 10697 4.163268 TGGTTATTCTCATTGACGATGGGA 59.837 41.667 0.61 0.61 43.56 4.37
6637 10698 5.163205 TGGTTATTCTCATTGACGATGGGAT 60.163 40.000 6.06 0.43 44.60 3.85
6638 10699 5.765182 GGTTATTCTCATTGACGATGGGATT 59.235 40.000 6.06 5.73 44.60 3.01
6639 10700 6.934645 GGTTATTCTCATTGACGATGGGATTA 59.065 38.462 6.06 4.80 44.60 1.75
6640 10701 7.095187 GGTTATTCTCATTGACGATGGGATTAC 60.095 40.741 6.06 5.21 44.60 1.89
6641 10702 5.351948 TTCTCATTGACGATGGGATTACA 57.648 39.130 6.06 0.00 44.60 2.41
6642 10703 4.693283 TCTCATTGACGATGGGATTACAC 58.307 43.478 0.61 0.00 40.37 2.90
6643 10704 4.161377 TCTCATTGACGATGGGATTACACA 59.839 41.667 0.61 0.00 40.37 3.72
6644 10705 5.034852 TCATTGACGATGGGATTACACAT 57.965 39.130 2.75 0.00 43.47 3.21
6645 10706 6.041523 TCTCATTGACGATGGGATTACACATA 59.958 38.462 0.61 0.00 40.37 2.29
6646 10707 6.768483 TCATTGACGATGGGATTACACATAT 58.232 36.000 2.75 0.00 40.57 1.78
6647 10708 7.902087 TCATTGACGATGGGATTACACATATA 58.098 34.615 2.75 0.00 40.57 0.86
6648 10709 8.539544 TCATTGACGATGGGATTACACATATAT 58.460 33.333 2.75 0.00 40.57 0.86
6649 10710 9.816354 CATTGACGATGGGATTACACATATATA 57.184 33.333 0.00 0.00 40.57 0.86
6653 10714 9.627395 GACGATGGGATTACACATATATATAGC 57.373 37.037 0.00 0.00 40.57 2.97
6654 10715 8.585881 ACGATGGGATTACACATATATATAGCC 58.414 37.037 0.00 0.00 40.57 3.93
6655 10716 8.035394 CGATGGGATTACACATATATATAGCCC 58.965 40.741 8.32 8.32 40.57 5.19
6656 10717 9.105844 GATGGGATTACACATATATATAGCCCT 57.894 37.037 14.16 3.63 40.57 5.19
6657 10718 8.869986 TGGGATTACACATATATATAGCCCTT 57.130 34.615 14.16 0.00 0.00 3.95
6658 10719 8.713971 TGGGATTACACATATATATAGCCCTTG 58.286 37.037 14.16 0.00 0.00 3.61
6659 10720 8.934697 GGGATTACACATATATATAGCCCTTGA 58.065 37.037 8.08 0.00 0.00 3.02
6671 10732 4.821935 CCTTGAAGGGGGTGTGTC 57.178 61.111 2.50 0.00 0.00 3.67
6672 10733 1.074951 CCTTGAAGGGGGTGTGTCC 59.925 63.158 2.50 0.00 0.00 4.02
6673 10734 1.302511 CTTGAAGGGGGTGTGTCCG 60.303 63.158 0.00 0.00 37.00 4.79
6674 10735 1.764571 CTTGAAGGGGGTGTGTCCGA 61.765 60.000 0.00 0.00 37.00 4.55
6675 10736 1.346479 TTGAAGGGGGTGTGTCCGAA 61.346 55.000 0.00 0.00 37.00 4.30
6676 10737 1.003718 GAAGGGGGTGTGTCCGAAG 60.004 63.158 0.00 0.00 37.00 3.79
6690 10751 2.471255 CGAAGGGACATGAGGCAAC 58.529 57.895 0.00 0.00 0.00 4.17
6691 10752 1.026718 CGAAGGGACATGAGGCAACC 61.027 60.000 0.00 0.00 37.17 3.77
6692 10753 1.002134 AAGGGACATGAGGCAACCG 60.002 57.895 0.00 0.00 37.17 4.44
6693 10754 3.134127 GGGACATGAGGCAACCGC 61.134 66.667 0.00 0.00 37.44 5.68
6703 10764 3.744559 GCAACCGCCTTTGTCAGA 58.255 55.556 0.00 0.00 0.00 3.27
6704 10765 2.029743 GCAACCGCCTTTGTCAGAA 58.970 52.632 0.00 0.00 0.00 3.02
6705 10766 0.383949 GCAACCGCCTTTGTCAGAAA 59.616 50.000 0.00 0.00 0.00 2.52
6706 10767 1.202359 GCAACCGCCTTTGTCAGAAAA 60.202 47.619 0.00 0.00 0.00 2.29
6707 10768 2.737039 GCAACCGCCTTTGTCAGAAAAA 60.737 45.455 0.00 0.00 0.00 1.94
6708 10769 3.115554 CAACCGCCTTTGTCAGAAAAAG 58.884 45.455 6.13 6.13 34.94 2.27
6709 10770 1.067060 ACCGCCTTTGTCAGAAAAAGC 59.933 47.619 7.51 3.21 34.03 3.51
6710 10771 1.066908 CCGCCTTTGTCAGAAAAAGCA 59.933 47.619 7.51 0.00 34.03 3.91
6711 10772 2.388121 CGCCTTTGTCAGAAAAAGCAG 58.612 47.619 7.51 0.56 34.03 4.24
6712 10773 2.747436 GCCTTTGTCAGAAAAAGCAGG 58.253 47.619 7.51 0.00 34.03 4.85
6713 10774 2.546584 GCCTTTGTCAGAAAAAGCAGGG 60.547 50.000 7.51 0.00 34.03 4.45
6714 10775 2.958355 CCTTTGTCAGAAAAAGCAGGGA 59.042 45.455 7.51 0.00 34.03 4.20
6715 10776 3.575687 CCTTTGTCAGAAAAAGCAGGGAT 59.424 43.478 7.51 0.00 34.03 3.85
6716 10777 4.039609 CCTTTGTCAGAAAAAGCAGGGATT 59.960 41.667 7.51 0.00 34.03 3.01
6717 10778 5.243730 CCTTTGTCAGAAAAAGCAGGGATTA 59.756 40.000 7.51 0.00 34.03 1.75
6718 10779 6.239289 CCTTTGTCAGAAAAAGCAGGGATTAA 60.239 38.462 7.51 0.00 34.03 1.40
6719 10780 6.916360 TTGTCAGAAAAAGCAGGGATTAAT 57.084 33.333 0.00 0.00 0.00 1.40
6720 10781 8.415950 TTTGTCAGAAAAAGCAGGGATTAATA 57.584 30.769 0.00 0.00 0.00 0.98
6721 10782 7.630242 TGTCAGAAAAAGCAGGGATTAATAG 57.370 36.000 0.00 0.00 0.00 1.73
6722 10783 6.603201 TGTCAGAAAAAGCAGGGATTAATAGG 59.397 38.462 0.00 0.00 0.00 2.57
6723 10784 6.828785 GTCAGAAAAAGCAGGGATTAATAGGA 59.171 38.462 0.00 0.00 0.00 2.94
6724 10785 7.503902 GTCAGAAAAAGCAGGGATTAATAGGAT 59.496 37.037 0.00 0.00 0.00 3.24
6725 10786 8.061304 TCAGAAAAAGCAGGGATTAATAGGATT 58.939 33.333 0.00 0.00 0.00 3.01
6726 10787 9.354673 CAGAAAAAGCAGGGATTAATAGGATTA 57.645 33.333 0.00 0.00 0.00 1.75
6727 10788 9.936329 AGAAAAAGCAGGGATTAATAGGATTAA 57.064 29.630 0.00 0.00 0.00 1.40
6748 10809 9.237846 GATTAATTAAATCCTAACAGCAACAGC 57.762 33.333 1.21 0.00 38.47 4.40
6749 10810 6.588719 AATTAAATCCTAACAGCAACAGCA 57.411 33.333 0.00 0.00 0.00 4.41
6750 10811 3.923017 AAATCCTAACAGCAACAGCAC 57.077 42.857 0.00 0.00 0.00 4.40
6751 10812 1.826385 ATCCTAACAGCAACAGCACC 58.174 50.000 0.00 0.00 0.00 5.01
6752 10813 0.472044 TCCTAACAGCAACAGCACCA 59.528 50.000 0.00 0.00 0.00 4.17
6753 10814 0.593128 CCTAACAGCAACAGCACCAC 59.407 55.000 0.00 0.00 0.00 4.16
6754 10815 1.597742 CTAACAGCAACAGCACCACT 58.402 50.000 0.00 0.00 0.00 4.00
6755 10816 1.532868 CTAACAGCAACAGCACCACTC 59.467 52.381 0.00 0.00 0.00 3.51
6756 10817 1.439353 AACAGCAACAGCACCACTCG 61.439 55.000 0.00 0.00 0.00 4.18
6757 10818 1.889105 CAGCAACAGCACCACTCGT 60.889 57.895 0.00 0.00 0.00 4.18
6758 10819 1.889105 AGCAACAGCACCACTCGTG 60.889 57.895 0.00 0.00 46.03 4.35
6767 10828 2.279851 CCACTCGTGGTCGCAACA 60.280 61.111 7.93 0.00 45.53 3.33
6768 10829 2.594962 CCACTCGTGGTCGCAACAC 61.595 63.158 7.93 0.00 45.53 3.32
6769 10830 1.591594 CACTCGTGGTCGCAACACT 60.592 57.895 3.43 0.00 36.71 3.55
6770 10831 1.591594 ACTCGTGGTCGCAACACTG 60.592 57.895 3.43 0.00 36.71 3.66
6771 10832 1.591594 CTCGTGGTCGCAACACTGT 60.592 57.895 3.43 0.00 36.71 3.55
6772 10833 1.821241 CTCGTGGTCGCAACACTGTG 61.821 60.000 6.19 6.19 36.71 3.66
6773 10834 2.881266 CGTGGTCGCAACACTGTGG 61.881 63.158 13.09 0.00 36.71 4.17
6774 10835 2.899838 TGGTCGCAACACTGTGGC 60.900 61.111 13.09 5.88 36.92 5.01
6775 10836 2.591715 GGTCGCAACACTGTGGCT 60.592 61.111 13.09 0.00 37.81 4.75
6776 10837 2.186826 GGTCGCAACACTGTGGCTT 61.187 57.895 13.09 0.00 37.81 4.35
6777 10838 1.009675 GTCGCAACACTGTGGCTTG 60.010 57.895 13.09 9.49 34.73 4.01
6778 10839 1.451207 TCGCAACACTGTGGCTTGT 60.451 52.632 13.09 0.00 33.62 3.16
6779 10840 1.029408 TCGCAACACTGTGGCTTGTT 61.029 50.000 13.09 0.00 36.35 2.83
6781 10842 2.962089 CAACACTGTGGCTTGTTGC 58.038 52.632 13.09 0.00 44.42 4.17
6794 10855 4.439305 GCTTGTTGCCTATGATTTGTCA 57.561 40.909 0.00 0.00 35.15 3.58
6795 10856 5.002464 GCTTGTTGCCTATGATTTGTCAT 57.998 39.130 0.00 0.00 35.15 3.06
6796 10857 5.039333 GCTTGTTGCCTATGATTTGTCATC 58.961 41.667 0.00 0.00 35.15 2.92
6797 10858 4.880886 TGTTGCCTATGATTTGTCATCG 57.119 40.909 0.00 0.00 0.00 3.84
6798 10859 3.065233 TGTTGCCTATGATTTGTCATCGC 59.935 43.478 0.00 0.00 0.00 4.58
6799 10860 2.916640 TGCCTATGATTTGTCATCGCA 58.083 42.857 8.26 8.26 34.92 5.10
6800 10861 3.277715 TGCCTATGATTTGTCATCGCAA 58.722 40.909 9.37 0.00 34.61 4.85
6801 10862 3.065233 TGCCTATGATTTGTCATCGCAAC 59.935 43.478 9.37 0.00 34.61 4.17
6802 10863 3.065233 GCCTATGATTTGTCATCGCAACA 59.935 43.478 0.00 0.00 0.00 3.33
6803 10864 4.438608 GCCTATGATTTGTCATCGCAACAA 60.439 41.667 0.00 0.00 34.93 2.83
6804 10865 5.030295 CCTATGATTTGTCATCGCAACAAC 58.970 41.667 0.00 0.00 36.41 3.32
6805 10866 3.978718 TGATTTGTCATCGCAACAACA 57.021 38.095 0.00 0.00 36.41 3.33
6806 10867 3.626977 TGATTTGTCATCGCAACAACAC 58.373 40.909 0.00 0.00 36.41 3.32
6807 10868 2.483583 TTTGTCATCGCAACAACACC 57.516 45.000 0.00 0.00 36.41 4.16
6808 10869 1.383523 TTGTCATCGCAACAACACCA 58.616 45.000 0.00 0.00 31.90 4.17
6809 10870 0.660488 TGTCATCGCAACAACACCAC 59.340 50.000 0.00 0.00 0.00 4.16
6810 10871 0.944386 GTCATCGCAACAACACCACT 59.056 50.000 0.00 0.00 0.00 4.00
6811 10872 1.069906 GTCATCGCAACAACACCACTC 60.070 52.381 0.00 0.00 0.00 3.51
6812 10873 0.110688 CATCGCAACAACACCACTCG 60.111 55.000 0.00 0.00 0.00 4.18
6813 10874 0.531974 ATCGCAACAACACCACTCGT 60.532 50.000 0.00 0.00 0.00 4.18
6861 10922 5.165676 TCAGTAACGCGAACACATAAATCT 58.834 37.500 15.93 0.00 0.00 2.40
6865 10926 3.585862 ACGCGAACACATAAATCTCACT 58.414 40.909 15.93 0.00 0.00 3.41
6871 10932 6.255670 GCGAACACATAAATCTCACTGATACA 59.744 38.462 0.00 0.00 34.45 2.29
6930 10991 8.945481 TCATCATTTTGAAAAAGTGTCAATGT 57.055 26.923 0.00 0.00 35.03 2.71
6938 10999 6.015918 TGAAAAAGTGTCAATGTGGGGATAT 58.984 36.000 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 116 3.071457 TGTTCTTCTGATCTCAGTTGGCA 59.929 43.478 7.07 0.00 44.12 4.92
163 179 5.895636 TCGACATGGATTTTTGCATAACT 57.104 34.783 0.00 0.00 0.00 2.24
207 223 1.342819 GCGGATGCTACTCCTCTCAAT 59.657 52.381 0.00 0.00 38.39 2.57
218 234 2.125147 GGCACACTGCGGATGCTA 60.125 61.111 20.71 0.00 46.21 3.49
402 419 6.869388 AGTGCTACTAGTTTCTCTTTTAGTGC 59.131 38.462 0.00 0.00 0.00 4.40
415 432 8.074613 TGATACAACCATAAGTGCTACTAGTT 57.925 34.615 0.00 0.00 0.00 2.24
489 525 6.778069 ACTTAGCTAATCTATCTGCACCAGTA 59.222 38.462 6.64 0.00 32.61 2.74
504 540 7.719633 TCAAGAGTGTTTGGAAACTTAGCTAAT 59.280 33.333 6.64 0.00 39.59 1.73
517 554 2.440409 CCTCCCATCAAGAGTGTTTGG 58.560 52.381 0.00 0.00 0.00 3.28
533 570 4.442192 GGATGAACCATAGATATCGCCTCC 60.442 50.000 0.00 0.00 38.79 4.30
651 695 5.915196 GTGTTGAACACCTAGAAGAATTTGC 59.085 40.000 17.24 0.00 43.05 3.68
676 720 3.693578 AGTACTAGTACTCCGTTCCAAGC 59.306 47.826 26.61 0.42 42.30 4.01
679 723 3.009473 ACCAGTACTAGTACTCCGTTCCA 59.991 47.826 28.86 0.00 43.98 3.53
699 743 2.644676 GGGTTTATGGCAGAGAAGACC 58.355 52.381 0.00 0.00 0.00 3.85
746 2649 2.683933 GAGGCCTCGAGGGGTTGA 60.684 66.667 32.06 0.00 35.18 3.18
765 2668 1.984570 CCCAGCCGTGAAGAGGAGA 60.985 63.158 0.00 0.00 0.00 3.71
779 2682 4.634443 CGAATTAGTGGAGTTAAACCCCAG 59.366 45.833 0.00 0.00 0.00 4.45
802 2705 3.604875 TTTGATCTAAGGACGGGTCAC 57.395 47.619 0.75 0.00 0.00 3.67
803 2706 4.627284 TTTTTGATCTAAGGACGGGTCA 57.373 40.909 0.75 0.00 0.00 4.02
804 2707 7.803279 ATTATTTTTGATCTAAGGACGGGTC 57.197 36.000 0.00 0.00 0.00 4.46
805 2708 9.862149 ATTATTATTTTTGATCTAAGGACGGGT 57.138 29.630 0.00 0.00 0.00 5.28
822 2725 9.807921 AGGATGGGTCACGAATTATTATTATTT 57.192 29.630 0.00 0.00 0.00 1.40
823 2726 9.807921 AAGGATGGGTCACGAATTATTATTATT 57.192 29.630 0.00 0.00 0.00 1.40
824 2727 9.807921 AAAGGATGGGTCACGAATTATTATTAT 57.192 29.630 0.00 0.00 0.00 1.28
825 2728 9.280174 GAAAGGATGGGTCACGAATTATTATTA 57.720 33.333 0.00 0.00 0.00 0.98
826 2729 7.230712 GGAAAGGATGGGTCACGAATTATTATT 59.769 37.037 0.00 0.00 0.00 1.40
827 2730 6.715264 GGAAAGGATGGGTCACGAATTATTAT 59.285 38.462 0.00 0.00 0.00 1.28
828 2731 6.059484 GGAAAGGATGGGTCACGAATTATTA 58.941 40.000 0.00 0.00 0.00 0.98
829 2732 4.887655 GGAAAGGATGGGTCACGAATTATT 59.112 41.667 0.00 0.00 0.00 1.40
830 2733 4.461198 GGAAAGGATGGGTCACGAATTAT 58.539 43.478 0.00 0.00 0.00 1.28
844 2747 1.141185 GGAATCGGAGGGGAAAGGAT 58.859 55.000 0.00 0.00 0.00 3.24
1176 3097 4.459089 GAGACGCTGAGCACCCCC 62.459 72.222 4.88 0.00 0.00 5.40
1404 3325 4.523173 CAGTACCCGGATCATACACTACAT 59.477 45.833 0.73 0.00 0.00 2.29
1712 3718 3.858247 ACCTATCGCACAAAGGAACTAC 58.142 45.455 0.00 0.00 38.49 2.73
2000 4009 4.142204 CGGAGGGAGTACTTTTCTTCCTAC 60.142 50.000 15.58 8.75 40.68 3.18
2157 4167 2.148446 TCAAATGCAAGGATCCCAGG 57.852 50.000 8.55 0.00 0.00 4.45
2465 4481 5.728049 CGTAGACAAATAAATGTGTGCTTCG 59.272 40.000 0.00 0.00 32.57 3.79
2525 4541 8.482943 TGAAGCATAGAAGTATAGCCTTGTTAA 58.517 33.333 0.00 0.00 0.00 2.01
2695 4711 4.385754 GGATCAAATTCTGCCTTAGGGTCT 60.386 45.833 0.00 0.00 34.45 3.85
2903 4919 3.456277 ACCATCTTAGGTTCATCCTCCAC 59.544 47.826 0.00 0.00 44.42 4.02
3037 5053 5.871396 AGGTTAAGAGTCAAGACTTCACA 57.129 39.130 3.96 0.00 42.66 3.58
3077 5094 5.985530 AGAAAAATGCTTTAAACAGTCAGCC 59.014 36.000 0.00 0.00 0.00 4.85
3084 5101 8.194104 TCTGCAGTAAGAAAAATGCTTTAAACA 58.806 29.630 14.67 0.00 39.42 2.83
3527 5546 7.453752 TCCTAAAAGGTAGAGAAAAGCAGTCTA 59.546 37.037 0.00 0.00 36.53 2.59
3544 5563 5.176592 CGAGAAAGGGTAGTTCCTAAAAGG 58.823 45.833 0.00 0.00 35.80 3.11
3751 5770 2.393646 GGTTCTGATAGCCTCTGGAGT 58.606 52.381 0.00 0.00 0.00 3.85
3978 5997 2.079925 CAGTTTCCTTGCTCCAGCTAC 58.920 52.381 0.00 0.00 42.66 3.58
4082 6101 4.685575 GCCATCAGTGCTCTTAGGAAGATT 60.686 45.833 2.93 0.00 36.82 2.40
4247 6266 7.548780 ACCATCAATGTATGTTAAAAATGCACC 59.451 33.333 0.00 0.00 0.00 5.01
4262 6282 4.883585 GCCAGAATCTTGACCATCAATGTA 59.116 41.667 0.00 0.00 35.59 2.29
4323 6343 4.470462 CTTCATAAACAGCTGAACACTGC 58.530 43.478 23.35 0.00 38.79 4.40
4390 6410 1.423161 GCTCCAGCCCCTATCTCAAAT 59.577 52.381 0.00 0.00 34.31 2.32
5307 7437 1.024271 CAGGAACAACCCATATGCCG 58.976 55.000 0.00 0.00 40.05 5.69
5398 7536 5.209818 ACTGATTACAAACGTCCTTCAGA 57.790 39.130 14.02 0.00 34.62 3.27
5587 7731 2.693074 GTTGGGTGTGGAAACAATGAGT 59.307 45.455 0.00 0.00 46.06 3.41
5653 7797 2.301583 GTCTTGTTCCTGCTCCTCTTCT 59.698 50.000 0.00 0.00 0.00 2.85
5751 7895 3.474486 TTGTGGCTTGCAGCGAGGA 62.474 57.895 11.92 0.00 43.62 3.71
5877 8021 1.795286 GATGCGAATCATCCTCGTTCC 59.205 52.381 0.00 0.00 44.54 3.62
5936 8080 2.609737 CCCAAACTCAGTGAGACGGTAC 60.610 54.545 26.86 0.00 33.32 3.34
6110 8282 1.202698 AGGGATTAGAGCCATCGCAAC 60.203 52.381 0.00 0.00 36.33 4.17
6351 10083 3.751175 CGACATAACAGCTGGAGGAAAAA 59.249 43.478 19.93 0.00 0.00 1.94
6352 10084 3.334691 CGACATAACAGCTGGAGGAAAA 58.665 45.455 19.93 0.00 0.00 2.29
6353 10085 2.935238 GCGACATAACAGCTGGAGGAAA 60.935 50.000 19.93 0.00 0.00 3.13
6527 10588 2.831284 GCCAACAACCCACGGTGT 60.831 61.111 7.45 0.00 35.34 4.16
6528 10589 3.601685 GGCCAACAACCCACGGTG 61.602 66.667 0.00 0.00 35.34 4.94
6529 10590 3.444818 ATGGCCAACAACCCACGGT 62.445 57.895 10.96 0.00 37.65 4.83
6530 10591 2.600173 ATGGCCAACAACCCACGG 60.600 61.111 10.96 0.00 33.17 4.94
6531 10592 1.250154 ATCATGGCCAACAACCCACG 61.250 55.000 10.96 0.00 33.17 4.94
6532 10593 0.975887 AATCATGGCCAACAACCCAC 59.024 50.000 10.96 0.00 33.17 4.61
6533 10594 1.347050 CAAATCATGGCCAACAACCCA 59.653 47.619 10.96 0.00 35.21 4.51
6534 10595 1.347378 ACAAATCATGGCCAACAACCC 59.653 47.619 10.96 0.00 0.00 4.11
6535 10596 2.036992 TGACAAATCATGGCCAACAACC 59.963 45.455 10.96 0.00 35.52 3.77
6536 10597 3.383620 TGACAAATCATGGCCAACAAC 57.616 42.857 10.96 0.00 35.52 3.32
6537 10598 3.367190 CGATGACAAATCATGGCCAACAA 60.367 43.478 10.96 0.00 46.01 2.83
6538 10599 2.164017 CGATGACAAATCATGGCCAACA 59.836 45.455 10.96 0.00 46.01 3.33
6539 10600 2.801063 CGATGACAAATCATGGCCAAC 58.199 47.619 10.96 0.00 46.01 3.77
6544 10605 3.119743 ACAGTTGCGATGACAAATCATGG 60.120 43.478 0.00 0.00 46.01 3.66
6545 10606 4.087510 ACAGTTGCGATGACAAATCATG 57.912 40.909 0.00 0.00 46.01 3.07
6547 10608 4.566545 AAACAGTTGCGATGACAAATCA 57.433 36.364 0.00 0.00 39.83 2.57
6548 10609 6.636850 AGTTAAAACAGTTGCGATGACAAATC 59.363 34.615 0.00 0.00 0.00 2.17
6549 10610 6.503524 AGTTAAAACAGTTGCGATGACAAAT 58.496 32.000 0.00 0.00 0.00 2.32
6550 10611 5.885881 AGTTAAAACAGTTGCGATGACAAA 58.114 33.333 0.00 0.00 0.00 2.83
6551 10612 5.493133 AGTTAAAACAGTTGCGATGACAA 57.507 34.783 0.00 0.00 0.00 3.18
6552 10613 5.986741 TCTAGTTAAAACAGTTGCGATGACA 59.013 36.000 0.00 0.00 0.00 3.58
6553 10614 6.365247 TCTCTAGTTAAAACAGTTGCGATGAC 59.635 38.462 0.00 0.00 0.00 3.06
6554 10615 6.452242 TCTCTAGTTAAAACAGTTGCGATGA 58.548 36.000 0.00 0.00 0.00 2.92
6555 10616 6.706055 TCTCTAGTTAAAACAGTTGCGATG 57.294 37.500 0.00 0.00 0.00 3.84
6556 10617 7.656137 TCTTTCTCTAGTTAAAACAGTTGCGAT 59.344 33.333 0.00 0.00 0.00 4.58
6557 10618 6.982141 TCTTTCTCTAGTTAAAACAGTTGCGA 59.018 34.615 0.00 0.00 0.00 5.10
6558 10619 7.169308 TCTCTTTCTCTAGTTAAAACAGTTGCG 59.831 37.037 0.00 0.00 0.00 4.85
6559 10620 8.366671 TCTCTTTCTCTAGTTAAAACAGTTGC 57.633 34.615 0.00 0.00 0.00 4.17
6569 10630 9.575868 TCTCTTGTCTTTCTCTTTCTCTAGTTA 57.424 33.333 0.00 0.00 0.00 2.24
6570 10631 8.472007 TCTCTTGTCTTTCTCTTTCTCTAGTT 57.528 34.615 0.00 0.00 0.00 2.24
6571 10632 8.650143 ATCTCTTGTCTTTCTCTTTCTCTAGT 57.350 34.615 0.00 0.00 0.00 2.57
6573 10634 9.967451 TCTATCTCTTGTCTTTCTCTTTCTCTA 57.033 33.333 0.00 0.00 0.00 2.43
6574 10635 8.877864 TCTATCTCTTGTCTTTCTCTTTCTCT 57.122 34.615 0.00 0.00 0.00 3.10
6575 10636 8.956426 TCTCTATCTCTTGTCTTTCTCTTTCTC 58.044 37.037 0.00 0.00 0.00 2.87
6576 10637 8.877864 TCTCTATCTCTTGTCTTTCTCTTTCT 57.122 34.615 0.00 0.00 0.00 2.52
6577 10638 9.520204 CATCTCTATCTCTTGTCTTTCTCTTTC 57.480 37.037 0.00 0.00 0.00 2.62
6578 10639 9.034800 ACATCTCTATCTCTTGTCTTTCTCTTT 57.965 33.333 0.00 0.00 0.00 2.52
6579 10640 8.593945 ACATCTCTATCTCTTGTCTTTCTCTT 57.406 34.615 0.00 0.00 0.00 2.85
6580 10641 9.693739 TTACATCTCTATCTCTTGTCTTTCTCT 57.306 33.333 0.00 0.00 0.00 3.10
6584 10645 9.868277 CACTTTACATCTCTATCTCTTGTCTTT 57.132 33.333 0.00 0.00 0.00 2.52
6585 10646 9.249053 TCACTTTACATCTCTATCTCTTGTCTT 57.751 33.333 0.00 0.00 0.00 3.01
6586 10647 8.815565 TCACTTTACATCTCTATCTCTTGTCT 57.184 34.615 0.00 0.00 0.00 3.41
6588 10649 9.814899 CATTCACTTTACATCTCTATCTCTTGT 57.185 33.333 0.00 0.00 0.00 3.16
6589 10650 9.258826 CCATTCACTTTACATCTCTATCTCTTG 57.741 37.037 0.00 0.00 0.00 3.02
6590 10651 8.986991 ACCATTCACTTTACATCTCTATCTCTT 58.013 33.333 0.00 0.00 0.00 2.85
6591 10652 8.546083 ACCATTCACTTTACATCTCTATCTCT 57.454 34.615 0.00 0.00 0.00 3.10
6597 10658 9.606631 GAGAATAACCATTCACTTTACATCTCT 57.393 33.333 0.65 0.00 42.66 3.10
6598 10659 9.383519 TGAGAATAACCATTCACTTTACATCTC 57.616 33.333 0.65 0.00 42.66 2.75
6599 10660 9.911788 ATGAGAATAACCATTCACTTTACATCT 57.088 29.630 0.65 0.00 42.66 2.90
6602 10663 9.513906 TCAATGAGAATAACCATTCACTTTACA 57.486 29.630 0.65 0.00 42.66 2.41
6603 10664 9.774742 GTCAATGAGAATAACCATTCACTTTAC 57.225 33.333 0.65 0.00 42.66 2.01
6604 10665 8.664798 CGTCAATGAGAATAACCATTCACTTTA 58.335 33.333 0.65 0.00 42.66 1.85
6605 10666 7.390440 TCGTCAATGAGAATAACCATTCACTTT 59.610 33.333 0.65 0.00 42.66 2.66
6606 10667 6.878923 TCGTCAATGAGAATAACCATTCACTT 59.121 34.615 0.65 0.00 42.66 3.16
6607 10668 6.406370 TCGTCAATGAGAATAACCATTCACT 58.594 36.000 0.65 0.00 42.66 3.41
6608 10669 6.662414 TCGTCAATGAGAATAACCATTCAC 57.338 37.500 0.65 0.00 42.66 3.18
6609 10670 6.260714 CCATCGTCAATGAGAATAACCATTCA 59.739 38.462 0.65 0.00 38.01 2.57
6610 10671 6.293626 CCCATCGTCAATGAGAATAACCATTC 60.294 42.308 0.00 0.00 37.59 2.67
6611 10672 5.532406 CCCATCGTCAATGAGAATAACCATT 59.468 40.000 0.00 0.00 37.59 3.16
6612 10673 5.065914 CCCATCGTCAATGAGAATAACCAT 58.934 41.667 0.00 0.00 37.59 3.55
6613 10674 4.163268 TCCCATCGTCAATGAGAATAACCA 59.837 41.667 0.00 0.00 37.59 3.67
6614 10675 4.703897 TCCCATCGTCAATGAGAATAACC 58.296 43.478 0.00 0.00 37.59 2.85
6615 10676 6.867662 AATCCCATCGTCAATGAGAATAAC 57.132 37.500 0.00 0.00 37.59 1.89
6616 10677 7.441157 GTGTAATCCCATCGTCAATGAGAATAA 59.559 37.037 0.00 0.00 37.59 1.40
6617 10678 6.929049 GTGTAATCCCATCGTCAATGAGAATA 59.071 38.462 0.00 0.00 37.59 1.75
6618 10679 5.760253 GTGTAATCCCATCGTCAATGAGAAT 59.240 40.000 0.00 0.00 37.59 2.40
6619 10680 5.116180 GTGTAATCCCATCGTCAATGAGAA 58.884 41.667 0.00 0.00 37.59 2.87
6620 10681 4.161377 TGTGTAATCCCATCGTCAATGAGA 59.839 41.667 0.00 0.00 37.59 3.27
6621 10682 4.441792 TGTGTAATCCCATCGTCAATGAG 58.558 43.478 0.00 0.00 37.59 2.90
6622 10683 4.479786 TGTGTAATCCCATCGTCAATGA 57.520 40.909 0.00 0.00 37.59 2.57
6623 10684 8.722480 ATATATGTGTAATCCCATCGTCAATG 57.278 34.615 0.00 0.00 34.93 2.82
6627 10688 9.627395 GCTATATATATGTGTAATCCCATCGTC 57.373 37.037 5.44 0.00 0.00 4.20
6628 10689 8.585881 GGCTATATATATGTGTAATCCCATCGT 58.414 37.037 5.44 0.00 0.00 3.73
6629 10690 8.035394 GGGCTATATATATGTGTAATCCCATCG 58.965 40.741 5.44 0.00 0.00 3.84
6630 10691 9.105844 AGGGCTATATATATGTGTAATCCCATC 57.894 37.037 5.44 0.00 0.00 3.51
6631 10692 9.465704 AAGGGCTATATATATGTGTAATCCCAT 57.534 33.333 5.44 2.61 0.00 4.00
6632 10693 8.713971 CAAGGGCTATATATATGTGTAATCCCA 58.286 37.037 5.44 0.00 0.00 4.37
6633 10694 8.934697 TCAAGGGCTATATATATGTGTAATCCC 58.065 37.037 5.44 0.01 0.00 3.85
6654 10715 1.074951 GGACACACCCCCTTCAAGG 59.925 63.158 0.00 0.00 34.30 3.61
6655 10716 1.302511 CGGACACACCCCCTTCAAG 60.303 63.158 0.00 0.00 34.64 3.02
6656 10717 1.346479 TTCGGACACACCCCCTTCAA 61.346 55.000 0.00 0.00 34.64 2.69
6657 10718 1.764571 CTTCGGACACACCCCCTTCA 61.765 60.000 0.00 0.00 34.64 3.02
6658 10719 1.003718 CTTCGGACACACCCCCTTC 60.004 63.158 0.00 0.00 34.64 3.46
6659 10720 2.526046 CCTTCGGACACACCCCCTT 61.526 63.158 0.00 0.00 34.64 3.95
6660 10721 2.928396 CCTTCGGACACACCCCCT 60.928 66.667 0.00 0.00 34.64 4.79
6661 10722 4.029809 CCCTTCGGACACACCCCC 62.030 72.222 0.00 0.00 34.64 5.40
6662 10723 2.926242 TCCCTTCGGACACACCCC 60.926 66.667 0.00 0.00 31.13 4.95
6670 10731 1.198094 TTGCCTCATGTCCCTTCGGA 61.198 55.000 0.00 0.00 35.01 4.55
6671 10732 1.026718 GTTGCCTCATGTCCCTTCGG 61.027 60.000 0.00 0.00 0.00 4.30
6672 10733 1.026718 GGTTGCCTCATGTCCCTTCG 61.027 60.000 0.00 0.00 0.00 3.79
6673 10734 1.026718 CGGTTGCCTCATGTCCCTTC 61.027 60.000 0.00 0.00 0.00 3.46
6674 10735 1.002134 CGGTTGCCTCATGTCCCTT 60.002 57.895 0.00 0.00 0.00 3.95
6675 10736 2.671070 CGGTTGCCTCATGTCCCT 59.329 61.111 0.00 0.00 0.00 4.20
6676 10737 3.134127 GCGGTTGCCTCATGTCCC 61.134 66.667 0.00 0.00 33.98 4.46
6686 10747 0.383949 TTTCTGACAAAGGCGGTTGC 59.616 50.000 4.17 0.00 41.71 4.17
6687 10748 2.861462 TTTTCTGACAAAGGCGGTTG 57.139 45.000 2.87 2.87 34.52 3.77
6688 10749 2.481276 GCTTTTTCTGACAAAGGCGGTT 60.481 45.455 15.77 0.00 32.66 4.44
6689 10750 1.067060 GCTTTTTCTGACAAAGGCGGT 59.933 47.619 15.77 0.00 32.66 5.68
6690 10751 1.066908 TGCTTTTTCTGACAAAGGCGG 59.933 47.619 15.77 0.00 40.66 6.13
6691 10752 2.388121 CTGCTTTTTCTGACAAAGGCG 58.612 47.619 15.77 7.28 40.66 5.52
6692 10753 2.546584 CCCTGCTTTTTCTGACAAAGGC 60.547 50.000 15.77 12.74 38.80 4.35
6693 10754 2.958355 TCCCTGCTTTTTCTGACAAAGG 59.042 45.455 15.77 2.90 32.66 3.11
6694 10755 4.861102 ATCCCTGCTTTTTCTGACAAAG 57.139 40.909 11.06 11.06 34.80 2.77
6695 10756 6.723298 TTAATCCCTGCTTTTTCTGACAAA 57.277 33.333 0.00 0.00 0.00 2.83
6696 10757 6.916360 ATTAATCCCTGCTTTTTCTGACAA 57.084 33.333 0.00 0.00 0.00 3.18
6697 10758 6.603201 CCTATTAATCCCTGCTTTTTCTGACA 59.397 38.462 0.00 0.00 0.00 3.58
6698 10759 6.828785 TCCTATTAATCCCTGCTTTTTCTGAC 59.171 38.462 0.00 0.00 0.00 3.51
6699 10760 6.969043 TCCTATTAATCCCTGCTTTTTCTGA 58.031 36.000 0.00 0.00 0.00 3.27
6700 10761 7.830099 ATCCTATTAATCCCTGCTTTTTCTG 57.170 36.000 0.00 0.00 0.00 3.02
6701 10762 9.936329 TTAATCCTATTAATCCCTGCTTTTTCT 57.064 29.630 0.00 0.00 0.00 2.52
6722 10783 9.237846 GCTGTTGCTGTTAGGATTTAATTAATC 57.762 33.333 0.00 0.00 38.06 1.75
6723 10784 8.748412 TGCTGTTGCTGTTAGGATTTAATTAAT 58.252 29.630 0.00 0.00 40.48 1.40
6724 10785 8.026607 GTGCTGTTGCTGTTAGGATTTAATTAA 58.973 33.333 0.00 0.00 40.48 1.40
6725 10786 7.362574 GGTGCTGTTGCTGTTAGGATTTAATTA 60.363 37.037 0.00 0.00 40.48 1.40
6726 10787 6.389906 GTGCTGTTGCTGTTAGGATTTAATT 58.610 36.000 0.00 0.00 40.48 1.40
6727 10788 5.105756 GGTGCTGTTGCTGTTAGGATTTAAT 60.106 40.000 0.00 0.00 40.48 1.40
6728 10789 4.217550 GGTGCTGTTGCTGTTAGGATTTAA 59.782 41.667 0.00 0.00 40.48 1.52
6729 10790 3.756434 GGTGCTGTTGCTGTTAGGATTTA 59.244 43.478 0.00 0.00 40.48 1.40
6730 10791 2.558359 GGTGCTGTTGCTGTTAGGATTT 59.442 45.455 0.00 0.00 40.48 2.17
6731 10792 2.162681 GGTGCTGTTGCTGTTAGGATT 58.837 47.619 0.00 0.00 40.48 3.01
6732 10793 1.073763 TGGTGCTGTTGCTGTTAGGAT 59.926 47.619 0.00 0.00 40.48 3.24
6733 10794 0.472044 TGGTGCTGTTGCTGTTAGGA 59.528 50.000 0.00 0.00 40.48 2.94
6734 10795 0.593128 GTGGTGCTGTTGCTGTTAGG 59.407 55.000 0.00 0.00 40.48 2.69
6735 10796 1.532868 GAGTGGTGCTGTTGCTGTTAG 59.467 52.381 0.00 0.00 40.48 2.34
6736 10797 1.593196 GAGTGGTGCTGTTGCTGTTA 58.407 50.000 0.00 0.00 40.48 2.41
6737 10798 1.439353 CGAGTGGTGCTGTTGCTGTT 61.439 55.000 0.00 0.00 40.48 3.16
6738 10799 1.889105 CGAGTGGTGCTGTTGCTGT 60.889 57.895 0.00 0.00 40.48 4.40
6739 10800 1.889105 ACGAGTGGTGCTGTTGCTG 60.889 57.895 0.00 0.00 40.48 4.41
6740 10801 1.889105 CACGAGTGGTGCTGTTGCT 60.889 57.895 0.00 0.00 40.33 3.91
6741 10802 2.633657 CACGAGTGGTGCTGTTGC 59.366 61.111 0.00 0.00 40.33 4.17
6742 10803 3.333414 CCACGAGTGGTGCTGTTG 58.667 61.111 13.82 0.00 45.62 3.33
6751 10812 1.591594 AGTGTTGCGACCACGAGTG 60.592 57.895 0.45 0.00 42.66 3.51
6752 10813 1.591594 CAGTGTTGCGACCACGAGT 60.592 57.895 0.45 0.00 42.66 4.18
6753 10814 1.591594 ACAGTGTTGCGACCACGAG 60.592 57.895 0.45 2.05 42.66 4.18
6754 10815 1.880796 CACAGTGTTGCGACCACGA 60.881 57.895 0.45 0.00 42.66 4.35
6755 10816 2.625906 CACAGTGTTGCGACCACG 59.374 61.111 0.45 0.00 37.88 4.94
6756 10817 3.022287 CCACAGTGTTGCGACCAC 58.978 61.111 0.45 0.17 0.00 4.16
6757 10818 2.884997 AAGCCACAGTGTTGCGACCA 62.885 55.000 13.18 0.00 29.20 4.02
6758 10819 2.186826 AAGCCACAGTGTTGCGACC 61.187 57.895 13.18 0.00 29.20 4.79
6759 10820 1.009675 CAAGCCACAGTGTTGCGAC 60.010 57.895 13.18 0.00 29.20 5.19
6760 10821 1.029408 AACAAGCCACAGTGTTGCGA 61.029 50.000 13.18 0.00 36.62 5.10
6761 10822 0.866906 CAACAAGCCACAGTGTTGCG 60.867 55.000 13.18 3.51 45.70 4.85
6762 10823 2.962089 CAACAAGCCACAGTGTTGC 58.038 52.632 11.28 11.28 45.70 4.17
6773 10834 4.439305 TGACAAATCATAGGCAACAAGC 57.561 40.909 0.00 0.00 44.65 4.01
6774 10835 5.268544 CGATGACAAATCATAGGCAACAAG 58.731 41.667 0.00 0.00 46.01 3.16
6775 10836 4.438608 GCGATGACAAATCATAGGCAACAA 60.439 41.667 7.53 0.00 46.01 2.83
6776 10837 3.065233 GCGATGACAAATCATAGGCAACA 59.935 43.478 7.53 0.00 46.01 3.33
6777 10838 3.065233 TGCGATGACAAATCATAGGCAAC 59.935 43.478 11.09 0.00 46.01 4.17
6778 10839 3.277715 TGCGATGACAAATCATAGGCAA 58.722 40.909 11.09 0.07 46.01 4.52
6779 10840 2.916640 TGCGATGACAAATCATAGGCA 58.083 42.857 9.98 9.98 46.01 4.75
6780 10841 3.065233 TGTTGCGATGACAAATCATAGGC 59.935 43.478 0.00 6.07 46.01 3.93
6781 10842 4.880886 TGTTGCGATGACAAATCATAGG 57.119 40.909 0.00 0.00 46.01 2.57
6782 10843 5.509272 GTGTTGTTGCGATGACAAATCATAG 59.491 40.000 0.00 0.00 46.01 2.23
6783 10844 5.389778 GTGTTGTTGCGATGACAAATCATA 58.610 37.500 0.00 0.00 46.01 2.15
6785 10846 3.549827 GGTGTTGTTGCGATGACAAATCA 60.550 43.478 0.00 0.00 38.60 2.57
6786 10847 2.979813 GGTGTTGTTGCGATGACAAATC 59.020 45.455 0.00 0.00 38.60 2.17
6787 10848 2.360483 TGGTGTTGTTGCGATGACAAAT 59.640 40.909 0.00 0.00 38.60 2.32
6788 10849 1.745653 TGGTGTTGTTGCGATGACAAA 59.254 42.857 0.00 0.00 38.60 2.83
6789 10850 1.064803 GTGGTGTTGTTGCGATGACAA 59.935 47.619 0.00 0.00 34.83 3.18
6790 10851 0.660488 GTGGTGTTGTTGCGATGACA 59.340 50.000 0.00 0.00 0.00 3.58
6791 10852 0.944386 AGTGGTGTTGTTGCGATGAC 59.056 50.000 0.00 0.00 0.00 3.06
6792 10853 1.225855 GAGTGGTGTTGTTGCGATGA 58.774 50.000 0.00 0.00 0.00 2.92
6793 10854 0.110688 CGAGTGGTGTTGTTGCGATG 60.111 55.000 0.00 0.00 0.00 3.84
6794 10855 0.531974 ACGAGTGGTGTTGTTGCGAT 60.532 50.000 0.00 0.00 0.00 4.58
6795 10856 1.153529 ACGAGTGGTGTTGTTGCGA 60.154 52.632 0.00 0.00 0.00 5.10
6796 10857 1.011242 CACGAGTGGTGTTGTTGCG 60.011 57.895 0.00 0.00 41.89 4.85
6797 10858 1.355210 CCACGAGTGGTGTTGTTGC 59.645 57.895 13.82 0.00 45.52 4.17
6807 10868 2.594962 GGTGTTGCGACCACGAGTG 61.595 63.158 0.45 0.00 42.66 3.51
6808 10869 2.279918 GGTGTTGCGACCACGAGT 60.280 61.111 0.45 0.00 42.66 4.18
6809 10870 3.403057 CGGTGTTGCGACCACGAG 61.403 66.667 10.95 0.80 42.66 4.18
6810 10871 4.210093 ACGGTGTTGCGACCACGA 62.210 61.111 20.27 0.00 42.66 4.35
6811 10872 3.995669 CACGGTGTTGCGACCACG 61.996 66.667 13.93 13.93 42.93 4.94
6812 10873 3.645975 CCACGGTGTTGCGACCAC 61.646 66.667 7.45 0.00 35.50 4.16
6815 10876 3.276846 AAGCCACGGTGTTGCGAC 61.277 61.111 7.45 0.00 29.20 5.19
6816 10877 3.276091 CAAGCCACGGTGTTGCGA 61.276 61.111 7.45 0.00 29.20 5.10
6817 10878 3.521308 GACAAGCCACGGTGTTGCG 62.521 63.158 7.45 0.00 29.20 4.85
6818 10879 2.331451 GACAAGCCACGGTGTTGC 59.669 61.111 7.45 4.33 0.00 4.17
6819 10880 2.631428 CGACAAGCCACGGTGTTG 59.369 61.111 7.45 8.48 0.00 3.33
6820 10881 3.276846 GCGACAAGCCACGGTGTT 61.277 61.111 7.45 0.00 40.81 3.32
6861 10922 7.710907 GTCTTATGCCAATACTTGTATCAGTGA 59.289 37.037 0.00 0.00 0.00 3.41
6871 10932 7.534723 TCCGTATAGTCTTATGCCAATACTT 57.465 36.000 0.00 0.00 0.00 2.24
6907 10968 7.227116 CCCACATTGACACTTTTTCAAAATGAT 59.773 33.333 2.88 0.00 36.57 2.45
6908 10969 6.538021 CCCACATTGACACTTTTTCAAAATGA 59.462 34.615 2.88 0.00 36.57 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.