Multiple sequence alignment - TraesCS2B01G262700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G262700 chr2B 100.000 3509 0 0 1 3509 347080517 347077009 0.000000e+00 6481
1 TraesCS2B01G262700 chr2B 90.202 347 17 6 336 668 51190063 51190406 1.500000e-118 436
2 TraesCS2B01G262700 chr2B 87.658 316 15 12 368 670 129207524 129207828 2.590000e-91 346
3 TraesCS2B01G262700 chr2B 83.908 348 27 13 336 670 161207539 161207208 4.400000e-79 305
4 TraesCS2B01G262700 chr2D 92.475 2764 132 34 574 3292 245377300 245380032 0.000000e+00 3882
5 TraesCS2B01G262700 chr2D 84.789 355 28 12 339 671 2563411 2563061 2.020000e-87 333
6 TraesCS2B01G262700 chr2D 89.205 176 13 3 3317 3486 245380025 245380200 7.630000e-52 215
7 TraesCS2B01G262700 chr2A 94.341 2138 69 15 671 2791 256125929 256128031 0.000000e+00 3230
8 TraesCS2B01G262700 chr2A 91.045 335 24 2 2789 3123 256128148 256128476 6.910000e-122 448
9 TraesCS2B01G262700 chr5B 93.294 343 19 2 1 340 153187491 153187832 1.450000e-138 503
10 TraesCS2B01G262700 chr5B 92.690 342 22 1 1 339 153261602 153261261 1.130000e-134 490
11 TraesCS2B01G262700 chr5B 87.037 270 16 7 336 589 418539585 418539851 1.590000e-73 287
12 TraesCS2B01G262700 chr5B 93.056 72 5 0 2286 2357 601326507 601326578 4.790000e-19 106
13 TraesCS2B01G262700 chr7B 93.510 339 19 1 1 336 379779889 379779551 5.230000e-138 501
14 TraesCS2B01G262700 chr7B 91.964 336 27 0 1 336 645245809 645246144 4.100000e-129 472
15 TraesCS2B01G262700 chr4B 93.472 337 21 1 1 337 299254519 299254854 1.880000e-137 499
16 TraesCS2B01G262700 chr4B 93.578 327 21 0 2 328 348505965 348506291 4.070000e-134 488
17 TraesCS2B01G262700 chr4B 93.030 330 20 1 2 328 320852251 320852580 2.450000e-131 479
18 TraesCS2B01G262700 chr4B 91.765 340 24 2 1 336 403557021 403557360 1.470000e-128 470
19 TraesCS2B01G262700 chr4B 88.451 355 16 12 339 672 541451413 541451063 4.220000e-109 405
20 TraesCS2B01G262700 chrUn 91.837 343 24 3 1 339 128086173 128085831 3.170000e-130 475
21 TraesCS2B01G262700 chrUn 84.765 361 30 12 336 674 29908376 29908019 4.340000e-89 339
22 TraesCS2B01G262700 chr3B 88.385 353 19 6 336 674 800016722 800017066 4.220000e-109 405
23 TraesCS2B01G262700 chr3B 81.845 336 27 14 341 673 20426561 20426865 5.810000e-63 252
24 TraesCS2B01G262700 chr6A 87.853 354 20 10 342 673 590046436 590046084 9.130000e-106 394
25 TraesCS2B01G262700 chr6A 85.794 359 26 12 336 671 26826032 26826388 1.200000e-94 357
26 TraesCS2B01G262700 chr7A 87.106 349 23 11 336 670 733084572 733084912 3.310000e-100 375
27 TraesCS2B01G262700 chr6D 85.352 355 22 13 336 670 422940425 422940769 1.210000e-89 340
28 TraesCS2B01G262700 chr5A 84.943 352 25 19 342 670 496994007 496993661 7.260000e-87 331
29 TraesCS2B01G262700 chr5A 91.667 72 6 0 2286 2357 609195562 609195633 2.230000e-17 100
30 TraesCS2B01G262700 chr1D 82.000 350 40 17 336 670 457789084 457789425 3.450000e-70 276
31 TraesCS2B01G262700 chr1D 76.758 327 65 7 2416 2732 351918200 351917875 4.660000e-39 172
32 TraesCS2B01G262700 chr1B 76.331 338 67 8 2416 2742 474262707 474262372 6.020000e-38 169
33 TraesCS2B01G262700 chr5D 91.667 72 6 0 2286 2357 488344352 488344423 2.230000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G262700 chr2B 347077009 347080517 3508 True 6481.0 6481 100.000 1 3509 1 chr2B.!!$R2 3508
1 TraesCS2B01G262700 chr2D 245377300 245380200 2900 False 2048.5 3882 90.840 574 3486 2 chr2D.!!$F1 2912
2 TraesCS2B01G262700 chr2A 256125929 256128476 2547 False 1839.0 3230 92.693 671 3123 2 chr2A.!!$F1 2452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 244 0.036448 AGAAGTCACCTCGGTCTCGA 59.964 55.0 0.0 0.0 43.86 4.04 F
963 987 0.105555 CAGGCTCCAGATCTCCCTCT 60.106 60.0 0.0 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1732 1762 0.540597 GGGCTTCTTCCCTGCAAAGT 60.541 55.0 0.00 0.00 43.13 2.66 R
2891 3044 0.835276 TCACAGGCATCTGGATGAGG 59.165 55.0 13.96 5.24 44.99 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.436292 CTGCTGCAGACTCCTGGC 60.436 66.667 24.88 0.00 40.72 4.85
18 19 3.972971 CTGCTGCAGACTCCTGGCC 62.973 68.421 24.88 0.00 40.72 5.36
19 20 4.025858 GCTGCAGACTCCTGGCCA 62.026 66.667 20.43 4.71 40.72 5.36
20 21 2.996395 CTGCAGACTCCTGGCCAT 59.004 61.111 8.42 0.00 40.72 4.40
21 22 1.451567 CTGCAGACTCCTGGCCATG 60.452 63.158 8.42 2.84 40.72 3.66
22 23 2.194388 CTGCAGACTCCTGGCCATGT 62.194 60.000 8.42 5.80 40.72 3.21
23 24 0.909133 TGCAGACTCCTGGCCATGTA 60.909 55.000 5.51 0.00 40.72 2.29
24 25 0.179062 GCAGACTCCTGGCCATGTAG 60.179 60.000 5.51 6.75 40.72 2.74
25 26 1.489481 CAGACTCCTGGCCATGTAGA 58.511 55.000 5.51 0.00 36.77 2.59
26 27 2.045524 CAGACTCCTGGCCATGTAGAT 58.954 52.381 5.51 0.00 36.77 1.98
27 28 2.036992 CAGACTCCTGGCCATGTAGATC 59.963 54.545 5.51 0.00 36.77 2.75
28 29 2.090831 AGACTCCTGGCCATGTAGATCT 60.091 50.000 5.51 0.00 0.00 2.75
29 30 2.298729 GACTCCTGGCCATGTAGATCTC 59.701 54.545 5.51 0.00 0.00 2.75
30 31 1.622811 CTCCTGGCCATGTAGATCTCC 59.377 57.143 5.51 0.00 0.00 3.71
31 32 1.062198 TCCTGGCCATGTAGATCTCCA 60.062 52.381 5.51 0.00 0.00 3.86
32 33 1.347050 CCTGGCCATGTAGATCTCCAG 59.653 57.143 5.51 15.73 40.43 3.86
33 34 1.347050 CTGGCCATGTAGATCTCCAGG 59.653 57.143 5.51 5.59 37.89 4.45
34 35 0.689623 GGCCATGTAGATCTCCAGGG 59.310 60.000 14.14 14.14 35.67 4.45
35 36 0.689623 GCCATGTAGATCTCCAGGGG 59.310 60.000 19.12 11.72 33.25 4.79
36 37 0.689623 CCATGTAGATCTCCAGGGGC 59.310 60.000 10.92 0.00 0.00 5.80
37 38 0.689623 CATGTAGATCTCCAGGGGCC 59.310 60.000 0.00 0.00 0.00 5.80
38 39 0.833834 ATGTAGATCTCCAGGGGCCG 60.834 60.000 0.00 0.00 0.00 6.13
39 40 2.201490 TAGATCTCCAGGGGCCGG 59.799 66.667 0.00 0.00 0.00 6.13
40 41 2.400461 TAGATCTCCAGGGGCCGGA 61.400 63.158 5.05 0.00 0.00 5.14
41 42 1.740649 TAGATCTCCAGGGGCCGGAT 61.741 60.000 5.05 0.00 0.00 4.18
42 43 2.851102 ATCTCCAGGGGCCGGATG 60.851 66.667 5.05 0.00 0.00 3.51
43 44 3.721172 ATCTCCAGGGGCCGGATGT 62.721 63.158 5.05 0.00 0.00 3.06
44 45 3.866582 CTCCAGGGGCCGGATGTC 61.867 72.222 5.05 0.00 0.00 3.06
55 56 3.399181 GGATGTCCGGTGCCTGGA 61.399 66.667 0.00 0.00 0.00 3.86
56 57 2.668632 GATGTCCGGTGCCTGGAA 59.331 61.111 0.00 0.00 37.23 3.53
57 58 1.450312 GATGTCCGGTGCCTGGAAG 60.450 63.158 0.00 0.00 37.23 3.46
58 59 3.628646 ATGTCCGGTGCCTGGAAGC 62.629 63.158 0.00 0.00 37.23 3.86
59 60 4.021925 GTCCGGTGCCTGGAAGCT 62.022 66.667 0.00 0.00 37.23 3.74
60 61 4.020617 TCCGGTGCCTGGAAGCTG 62.021 66.667 0.00 0.00 30.98 4.24
61 62 4.335647 CCGGTGCCTGGAAGCTGT 62.336 66.667 1.76 0.00 0.00 4.40
62 63 2.281761 CGGTGCCTGGAAGCTGTT 60.282 61.111 1.76 0.00 0.00 3.16
63 64 2.328099 CGGTGCCTGGAAGCTGTTC 61.328 63.158 1.76 0.00 0.00 3.18
64 65 1.073897 GGTGCCTGGAAGCTGTTCT 59.926 57.895 0.00 0.00 32.72 3.01
65 66 0.538287 GGTGCCTGGAAGCTGTTCTT 60.538 55.000 0.00 0.00 37.83 2.52
66 67 0.595095 GTGCCTGGAAGCTGTTCTTG 59.405 55.000 0.00 0.00 34.56 3.02
67 68 1.174712 TGCCTGGAAGCTGTTCTTGC 61.175 55.000 0.00 0.00 42.68 4.01
68 69 1.871126 GCCTGGAAGCTGTTCTTGCC 61.871 60.000 0.00 0.00 41.80 4.52
69 70 0.251077 CCTGGAAGCTGTTCTTGCCT 60.251 55.000 0.00 0.00 41.80 4.75
70 71 1.613836 CTGGAAGCTGTTCTTGCCTT 58.386 50.000 0.00 0.00 41.80 4.35
71 72 1.538950 CTGGAAGCTGTTCTTGCCTTC 59.461 52.381 0.00 0.00 41.80 3.46
72 73 1.143684 TGGAAGCTGTTCTTGCCTTCT 59.856 47.619 0.00 0.00 41.80 2.85
73 74 2.234143 GGAAGCTGTTCTTGCCTTCTT 58.766 47.619 0.00 0.00 37.18 2.52
74 75 2.227626 GGAAGCTGTTCTTGCCTTCTTC 59.772 50.000 0.00 0.00 37.18 2.87
75 76 1.902938 AGCTGTTCTTGCCTTCTTCC 58.097 50.000 0.00 0.00 0.00 3.46
76 77 0.519077 GCTGTTCTTGCCTTCTTCCG 59.481 55.000 0.00 0.00 0.00 4.30
77 78 1.884235 CTGTTCTTGCCTTCTTCCGT 58.116 50.000 0.00 0.00 0.00 4.69
78 79 2.222027 CTGTTCTTGCCTTCTTCCGTT 58.778 47.619 0.00 0.00 0.00 4.44
79 80 1.946768 TGTTCTTGCCTTCTTCCGTTG 59.053 47.619 0.00 0.00 0.00 4.10
80 81 1.266989 GTTCTTGCCTTCTTCCGTTGG 59.733 52.381 0.00 0.00 0.00 3.77
81 82 0.472471 TCTTGCCTTCTTCCGTTGGT 59.528 50.000 0.00 0.00 0.00 3.67
82 83 1.133915 TCTTGCCTTCTTCCGTTGGTT 60.134 47.619 0.00 0.00 0.00 3.67
83 84 1.266989 CTTGCCTTCTTCCGTTGGTTC 59.733 52.381 0.00 0.00 0.00 3.62
84 85 0.472471 TGCCTTCTTCCGTTGGTTCT 59.528 50.000 0.00 0.00 0.00 3.01
85 86 1.157585 GCCTTCTTCCGTTGGTTCTC 58.842 55.000 0.00 0.00 0.00 2.87
86 87 1.270893 GCCTTCTTCCGTTGGTTCTCT 60.271 52.381 0.00 0.00 0.00 3.10
87 88 2.810767 GCCTTCTTCCGTTGGTTCTCTT 60.811 50.000 0.00 0.00 0.00 2.85
88 89 3.067833 CCTTCTTCCGTTGGTTCTCTTC 58.932 50.000 0.00 0.00 0.00 2.87
89 90 3.244249 CCTTCTTCCGTTGGTTCTCTTCT 60.244 47.826 0.00 0.00 0.00 2.85
90 91 4.381411 CTTCTTCCGTTGGTTCTCTTCTT 58.619 43.478 0.00 0.00 0.00 2.52
91 92 4.417426 TCTTCCGTTGGTTCTCTTCTTT 57.583 40.909 0.00 0.00 0.00 2.52
92 93 4.377897 TCTTCCGTTGGTTCTCTTCTTTC 58.622 43.478 0.00 0.00 0.00 2.62
93 94 2.750948 TCCGTTGGTTCTCTTCTTTCG 58.249 47.619 0.00 0.00 0.00 3.46
94 95 2.101917 TCCGTTGGTTCTCTTCTTTCGT 59.898 45.455 0.00 0.00 0.00 3.85
95 96 2.221055 CCGTTGGTTCTCTTCTTTCGTG 59.779 50.000 0.00 0.00 0.00 4.35
96 97 2.221055 CGTTGGTTCTCTTCTTTCGTGG 59.779 50.000 0.00 0.00 0.00 4.94
97 98 3.463944 GTTGGTTCTCTTCTTTCGTGGA 58.536 45.455 0.00 0.00 0.00 4.02
98 99 3.107642 TGGTTCTCTTCTTTCGTGGAC 57.892 47.619 0.00 0.00 0.00 4.02
99 100 2.698797 TGGTTCTCTTCTTTCGTGGACT 59.301 45.455 0.00 0.00 0.00 3.85
100 101 3.134081 TGGTTCTCTTCTTTCGTGGACTT 59.866 43.478 0.00 0.00 0.00 3.01
101 102 3.495001 GGTTCTCTTCTTTCGTGGACTTG 59.505 47.826 0.00 0.00 0.00 3.16
102 103 3.386768 TCTCTTCTTTCGTGGACTTGG 57.613 47.619 0.00 0.00 0.00 3.61
103 104 2.698797 TCTCTTCTTTCGTGGACTTGGT 59.301 45.455 0.00 0.00 0.00 3.67
104 105 2.802816 CTCTTCTTTCGTGGACTTGGTG 59.197 50.000 0.00 0.00 0.00 4.17
105 106 1.873591 CTTCTTTCGTGGACTTGGTGG 59.126 52.381 0.00 0.00 0.00 4.61
106 107 0.534203 TCTTTCGTGGACTTGGTGGC 60.534 55.000 0.00 0.00 0.00 5.01
107 108 0.535102 CTTTCGTGGACTTGGTGGCT 60.535 55.000 0.00 0.00 0.00 4.75
108 109 0.106918 TTTCGTGGACTTGGTGGCTT 60.107 50.000 0.00 0.00 0.00 4.35
109 110 0.817634 TTCGTGGACTTGGTGGCTTG 60.818 55.000 0.00 0.00 0.00 4.01
110 111 1.227823 CGTGGACTTGGTGGCTTGA 60.228 57.895 0.00 0.00 0.00 3.02
111 112 1.507141 CGTGGACTTGGTGGCTTGAC 61.507 60.000 0.00 0.00 0.00 3.18
112 113 1.150536 TGGACTTGGTGGCTTGACC 59.849 57.895 0.00 0.00 39.84 4.02
122 123 2.885135 TGGCTTGACCATCTTCATGT 57.115 45.000 0.00 0.00 46.36 3.21
123 124 2.439409 TGGCTTGACCATCTTCATGTG 58.561 47.619 0.00 0.00 46.36 3.21
124 125 1.133790 GGCTTGACCATCTTCATGTGC 59.866 52.381 0.00 0.00 38.86 4.57
125 126 1.814394 GCTTGACCATCTTCATGTGCA 59.186 47.619 0.00 0.00 0.00 4.57
126 127 2.426024 GCTTGACCATCTTCATGTGCAT 59.574 45.455 0.00 0.00 0.00 3.96
127 128 3.488721 GCTTGACCATCTTCATGTGCATC 60.489 47.826 0.00 0.00 0.00 3.91
128 129 2.646930 TGACCATCTTCATGTGCATCC 58.353 47.619 0.00 0.00 0.00 3.51
129 130 2.240414 TGACCATCTTCATGTGCATCCT 59.760 45.455 0.00 0.00 0.00 3.24
130 131 2.877168 GACCATCTTCATGTGCATCCTC 59.123 50.000 0.00 0.00 0.00 3.71
131 132 1.871676 CCATCTTCATGTGCATCCTCG 59.128 52.381 0.00 0.00 0.00 4.63
132 133 1.871676 CATCTTCATGTGCATCCTCGG 59.128 52.381 0.00 0.00 0.00 4.63
133 134 0.178767 TCTTCATGTGCATCCTCGGG 59.821 55.000 0.00 0.00 0.00 5.14
134 135 0.178767 CTTCATGTGCATCCTCGGGA 59.821 55.000 0.00 0.00 35.55 5.14
135 136 0.178767 TTCATGTGCATCCTCGGGAG 59.821 55.000 0.00 0.00 34.05 4.30
144 145 2.364961 CCTCGGGAGGGTCCTCTT 59.635 66.667 15.74 0.00 44.87 2.85
145 146 2.060980 CCTCGGGAGGGTCCTCTTG 61.061 68.421 15.74 9.21 44.87 3.02
146 147 2.038975 TCGGGAGGGTCCTCTTGG 59.961 66.667 15.74 6.58 42.38 3.61
147 148 2.284699 CGGGAGGGTCCTCTTGGT 60.285 66.667 15.74 0.00 42.38 3.67
148 149 1.001248 CGGGAGGGTCCTCTTGGTA 59.999 63.158 15.74 0.00 42.38 3.25
149 150 1.328430 CGGGAGGGTCCTCTTGGTAC 61.328 65.000 15.74 0.00 42.38 3.34
150 151 0.981801 GGGAGGGTCCTCTTGGTACC 60.982 65.000 15.74 4.43 42.38 3.34
151 152 0.042881 GGAGGGTCCTCTTGGTACCT 59.957 60.000 14.36 0.00 42.38 3.08
152 153 1.290130 GGAGGGTCCTCTTGGTACCTA 59.710 57.143 14.36 4.36 42.38 3.08
153 154 2.292719 GGAGGGTCCTCTTGGTACCTAA 60.293 54.545 14.36 5.09 42.38 2.69
154 155 3.632906 GGAGGGTCCTCTTGGTACCTAAT 60.633 52.174 14.36 0.00 42.38 1.73
155 156 3.642377 GAGGGTCCTCTTGGTACCTAATC 59.358 52.174 14.36 0.00 39.39 1.75
156 157 3.013648 AGGGTCCTCTTGGTACCTAATCA 59.986 47.826 14.36 0.00 38.24 2.57
157 158 3.974642 GGGTCCTCTTGGTACCTAATCAT 59.025 47.826 14.36 0.00 35.36 2.45
158 159 4.202367 GGGTCCTCTTGGTACCTAATCATG 60.202 50.000 14.36 0.00 35.36 3.07
159 160 4.381411 GTCCTCTTGGTACCTAATCATGC 58.619 47.826 14.36 0.00 34.23 4.06
160 161 4.037222 TCCTCTTGGTACCTAATCATGCA 58.963 43.478 14.36 0.00 34.23 3.96
161 162 4.130118 CCTCTTGGTACCTAATCATGCAC 58.870 47.826 14.36 0.00 0.00 4.57
162 163 4.384098 CCTCTTGGTACCTAATCATGCACA 60.384 45.833 14.36 0.00 0.00 4.57
163 164 5.172687 TCTTGGTACCTAATCATGCACAA 57.827 39.130 14.36 0.00 0.00 3.33
164 165 4.941263 TCTTGGTACCTAATCATGCACAAC 59.059 41.667 14.36 0.00 0.00 3.32
165 166 4.293662 TGGTACCTAATCATGCACAACA 57.706 40.909 14.36 0.00 0.00 3.33
166 167 4.854173 TGGTACCTAATCATGCACAACAT 58.146 39.130 14.36 0.00 40.66 2.71
167 168 5.260424 TGGTACCTAATCATGCACAACATT 58.740 37.500 14.36 0.00 36.64 2.71
168 169 5.356751 TGGTACCTAATCATGCACAACATTC 59.643 40.000 14.36 0.00 36.64 2.67
169 170 4.989279 ACCTAATCATGCACAACATTCC 57.011 40.909 0.00 0.00 36.64 3.01
170 171 3.378112 ACCTAATCATGCACAACATTCCG 59.622 43.478 0.00 0.00 36.64 4.30
171 172 3.627123 CCTAATCATGCACAACATTCCGA 59.373 43.478 0.00 0.00 36.64 4.55
172 173 4.096231 CCTAATCATGCACAACATTCCGAA 59.904 41.667 0.00 0.00 36.64 4.30
173 174 2.987413 TCATGCACAACATTCCGAAC 57.013 45.000 0.00 0.00 36.64 3.95
174 175 2.503331 TCATGCACAACATTCCGAACT 58.497 42.857 0.00 0.00 36.64 3.01
175 176 2.884012 TCATGCACAACATTCCGAACTT 59.116 40.909 0.00 0.00 36.64 2.66
176 177 4.068599 TCATGCACAACATTCCGAACTTA 58.931 39.130 0.00 0.00 36.64 2.24
177 178 4.154015 TCATGCACAACATTCCGAACTTAG 59.846 41.667 0.00 0.00 36.64 2.18
178 179 2.811431 TGCACAACATTCCGAACTTAGG 59.189 45.455 0.00 0.00 0.00 2.69
179 180 2.812011 GCACAACATTCCGAACTTAGGT 59.188 45.455 0.00 0.00 0.00 3.08
180 181 3.998341 GCACAACATTCCGAACTTAGGTA 59.002 43.478 0.00 0.00 0.00 3.08
181 182 4.092968 GCACAACATTCCGAACTTAGGTAG 59.907 45.833 0.00 0.00 0.00 3.18
182 183 5.235516 CACAACATTCCGAACTTAGGTAGT 58.764 41.667 0.00 0.00 39.32 2.73
183 184 6.392354 CACAACATTCCGAACTTAGGTAGTA 58.608 40.000 0.00 0.00 35.54 1.82
184 185 6.530534 CACAACATTCCGAACTTAGGTAGTAG 59.469 42.308 0.00 0.00 35.54 2.57
185 186 5.259832 ACATTCCGAACTTAGGTAGTAGC 57.740 43.478 0.00 0.00 35.54 3.58
186 187 4.099113 ACATTCCGAACTTAGGTAGTAGCC 59.901 45.833 0.00 0.00 35.54 3.93
187 188 3.370840 TCCGAACTTAGGTAGTAGCCA 57.629 47.619 0.00 0.00 35.54 4.75
188 189 3.907221 TCCGAACTTAGGTAGTAGCCAT 58.093 45.455 0.00 0.00 35.54 4.40
189 190 3.635373 TCCGAACTTAGGTAGTAGCCATG 59.365 47.826 0.00 0.00 35.54 3.66
190 191 3.383825 CCGAACTTAGGTAGTAGCCATGT 59.616 47.826 0.00 0.00 35.54 3.21
191 192 4.499357 CCGAACTTAGGTAGTAGCCATGTC 60.499 50.000 0.00 0.00 35.54 3.06
192 193 4.338682 CGAACTTAGGTAGTAGCCATGTCT 59.661 45.833 0.00 0.00 35.54 3.41
193 194 5.505985 CGAACTTAGGTAGTAGCCATGTCTC 60.506 48.000 0.00 0.00 35.54 3.36
194 195 3.884091 ACTTAGGTAGTAGCCATGTCTCG 59.116 47.826 0.00 0.00 34.56 4.04
195 196 2.438800 AGGTAGTAGCCATGTCTCGT 57.561 50.000 0.00 0.00 0.00 4.18
196 197 2.025155 AGGTAGTAGCCATGTCTCGTG 58.975 52.381 0.00 0.00 0.00 4.35
197 198 2.022195 GGTAGTAGCCATGTCTCGTGA 58.978 52.381 0.00 0.00 0.00 4.35
198 199 2.033550 GGTAGTAGCCATGTCTCGTGAG 59.966 54.545 0.00 0.00 0.00 3.51
199 200 1.107114 AGTAGCCATGTCTCGTGAGG 58.893 55.000 0.00 0.00 0.00 3.86
200 201 1.103803 GTAGCCATGTCTCGTGAGGA 58.896 55.000 0.00 0.00 0.00 3.71
201 202 1.683917 GTAGCCATGTCTCGTGAGGAT 59.316 52.381 0.00 0.00 0.00 3.24
202 203 1.198713 AGCCATGTCTCGTGAGGATT 58.801 50.000 0.00 0.00 0.00 3.01
203 204 2.388735 AGCCATGTCTCGTGAGGATTA 58.611 47.619 0.00 0.00 0.00 1.75
204 205 2.968574 AGCCATGTCTCGTGAGGATTAT 59.031 45.455 0.00 0.00 0.00 1.28
205 206 4.152647 AGCCATGTCTCGTGAGGATTATA 58.847 43.478 0.00 0.00 0.00 0.98
206 207 4.774726 AGCCATGTCTCGTGAGGATTATAT 59.225 41.667 0.00 0.00 0.00 0.86
207 208 4.867047 GCCATGTCTCGTGAGGATTATATG 59.133 45.833 0.00 0.00 0.00 1.78
208 209 5.336770 GCCATGTCTCGTGAGGATTATATGA 60.337 44.000 0.00 0.00 0.00 2.15
209 210 6.328714 CCATGTCTCGTGAGGATTATATGAG 58.671 44.000 0.00 0.00 0.00 2.90
210 211 6.151817 CCATGTCTCGTGAGGATTATATGAGA 59.848 42.308 0.00 0.00 34.92 3.27
211 212 7.147932 CCATGTCTCGTGAGGATTATATGAGAT 60.148 40.741 0.00 0.00 38.37 2.75
212 213 8.897752 CATGTCTCGTGAGGATTATATGAGATA 58.102 37.037 0.00 0.00 38.37 1.98
213 214 9.639563 ATGTCTCGTGAGGATTATATGAGATAT 57.360 33.333 0.00 0.00 38.37 1.63
214 215 9.114952 TGTCTCGTGAGGATTATATGAGATATC 57.885 37.037 0.00 0.00 38.37 1.63
215 216 9.114952 GTCTCGTGAGGATTATATGAGATATCA 57.885 37.037 5.32 0.00 38.37 2.15
216 217 9.114952 TCTCGTGAGGATTATATGAGATATCAC 57.885 37.037 5.32 0.00 32.98 3.06
217 218 9.119418 CTCGTGAGGATTATATGAGATATCACT 57.881 37.037 5.32 0.00 30.79 3.41
230 231 8.635765 ATGAGATATCACTAAGGAGAGAAGTC 57.364 38.462 5.32 0.00 0.00 3.01
231 232 7.578203 TGAGATATCACTAAGGAGAGAAGTCA 58.422 38.462 5.32 0.00 0.00 3.41
232 233 7.500892 TGAGATATCACTAAGGAGAGAAGTCAC 59.499 40.741 5.32 0.00 0.00 3.67
233 234 6.775629 AGATATCACTAAGGAGAGAAGTCACC 59.224 42.308 5.32 0.00 33.74 4.02
234 235 4.390129 TCACTAAGGAGAGAAGTCACCT 57.610 45.455 0.00 0.00 45.07 4.00
235 236 4.337145 TCACTAAGGAGAGAAGTCACCTC 58.663 47.826 0.00 0.00 42.54 3.85
236 237 3.127895 CACTAAGGAGAGAAGTCACCTCG 59.872 52.174 0.00 0.00 42.54 4.63
237 238 1.551452 AAGGAGAGAAGTCACCTCGG 58.449 55.000 0.00 0.00 42.54 4.63
238 239 0.406361 AGGAGAGAAGTCACCTCGGT 59.594 55.000 0.00 0.00 39.43 4.69
239 240 0.812549 GGAGAGAAGTCACCTCGGTC 59.187 60.000 0.00 0.00 35.88 4.79
240 241 1.614850 GGAGAGAAGTCACCTCGGTCT 60.615 57.143 0.00 0.00 35.88 3.85
241 242 1.741145 GAGAGAAGTCACCTCGGTCTC 59.259 57.143 0.00 0.00 35.88 3.36
242 243 0.448593 GAGAAGTCACCTCGGTCTCG 59.551 60.000 0.00 0.00 37.82 4.04
243 244 0.036448 AGAAGTCACCTCGGTCTCGA 59.964 55.000 0.00 0.00 43.86 4.04
252 253 3.671262 TCGGTCTCGAGAGCTCTAG 57.329 57.895 34.34 22.37 40.88 2.43
253 254 0.531090 TCGGTCTCGAGAGCTCTAGC 60.531 60.000 34.34 14.47 40.88 3.42
254 255 0.531974 CGGTCTCGAGAGCTCTAGCT 60.532 60.000 34.34 3.65 46.99 3.32
271 272 1.093159 GCTCTTGCTCTTGTCATGGG 58.907 55.000 0.00 0.00 36.03 4.00
272 273 1.612726 GCTCTTGCTCTTGTCATGGGT 60.613 52.381 0.00 0.00 36.03 4.51
273 274 2.354259 CTCTTGCTCTTGTCATGGGTC 58.646 52.381 0.00 0.00 0.00 4.46
274 275 1.003580 TCTTGCTCTTGTCATGGGTCC 59.996 52.381 0.00 0.00 0.00 4.46
275 276 1.004044 CTTGCTCTTGTCATGGGTCCT 59.996 52.381 0.00 0.00 0.00 3.85
276 277 0.615331 TGCTCTTGTCATGGGTCCTC 59.385 55.000 0.00 0.00 0.00 3.71
277 278 0.908198 GCTCTTGTCATGGGTCCTCT 59.092 55.000 0.00 0.00 0.00 3.69
278 279 1.280421 GCTCTTGTCATGGGTCCTCTT 59.720 52.381 0.00 0.00 0.00 2.85
279 280 2.938756 GCTCTTGTCATGGGTCCTCTTG 60.939 54.545 0.00 0.00 0.00 3.02
280 281 2.568956 CTCTTGTCATGGGTCCTCTTGA 59.431 50.000 0.00 0.00 0.00 3.02
281 282 3.184628 TCTTGTCATGGGTCCTCTTGAT 58.815 45.455 0.00 0.00 0.00 2.57
282 283 3.054875 TCTTGTCATGGGTCCTCTTGATG 60.055 47.826 0.00 0.00 0.00 3.07
283 284 2.269023 TGTCATGGGTCCTCTTGATGT 58.731 47.619 0.00 0.00 0.00 3.06
284 285 2.644299 TGTCATGGGTCCTCTTGATGTT 59.356 45.455 0.00 0.00 0.00 2.71
285 286 3.074390 TGTCATGGGTCCTCTTGATGTTT 59.926 43.478 0.00 0.00 0.00 2.83
286 287 3.441572 GTCATGGGTCCTCTTGATGTTTG 59.558 47.826 0.00 0.00 0.00 2.93
287 288 2.584835 TGGGTCCTCTTGATGTTTGG 57.415 50.000 0.00 0.00 0.00 3.28
288 289 1.780309 TGGGTCCTCTTGATGTTTGGT 59.220 47.619 0.00 0.00 0.00 3.67
289 290 2.162681 GGGTCCTCTTGATGTTTGGTG 58.837 52.381 0.00 0.00 0.00 4.17
290 291 2.224769 GGGTCCTCTTGATGTTTGGTGA 60.225 50.000 0.00 0.00 0.00 4.02
291 292 3.077359 GGTCCTCTTGATGTTTGGTGAG 58.923 50.000 0.00 0.00 0.00 3.51
292 293 3.244561 GGTCCTCTTGATGTTTGGTGAGA 60.245 47.826 0.00 0.00 0.00 3.27
293 294 3.748568 GTCCTCTTGATGTTTGGTGAGAC 59.251 47.826 0.00 0.00 0.00 3.36
294 295 3.390967 TCCTCTTGATGTTTGGTGAGACA 59.609 43.478 0.00 0.00 0.00 3.41
295 296 4.136796 CCTCTTGATGTTTGGTGAGACAA 58.863 43.478 0.00 0.00 0.00 3.18
296 297 4.023707 CCTCTTGATGTTTGGTGAGACAAC 60.024 45.833 0.00 0.00 0.00 3.32
297 298 3.559655 TCTTGATGTTTGGTGAGACAACG 59.440 43.478 0.00 0.00 0.00 4.10
298 299 2.217750 TGATGTTTGGTGAGACAACGG 58.782 47.619 0.00 0.00 0.00 4.44
299 300 2.218603 GATGTTTGGTGAGACAACGGT 58.781 47.619 0.00 0.00 0.00 4.83
300 301 2.983907 TGTTTGGTGAGACAACGGTA 57.016 45.000 0.00 0.00 0.00 4.02
301 302 2.828877 TGTTTGGTGAGACAACGGTAG 58.171 47.619 0.00 0.00 0.00 3.18
302 303 2.431419 TGTTTGGTGAGACAACGGTAGA 59.569 45.455 0.00 0.00 0.00 2.59
303 304 3.070446 TGTTTGGTGAGACAACGGTAGAT 59.930 43.478 0.00 0.00 0.00 1.98
304 305 3.587797 TTGGTGAGACAACGGTAGATC 57.412 47.619 0.00 0.00 0.00 2.75
305 306 1.822990 TGGTGAGACAACGGTAGATCC 59.177 52.381 0.00 0.00 0.00 3.36
306 307 1.822990 GGTGAGACAACGGTAGATCCA 59.177 52.381 0.00 0.00 35.57 3.41
307 308 2.431057 GGTGAGACAACGGTAGATCCAT 59.569 50.000 0.00 0.00 35.57 3.41
308 309 3.448686 GTGAGACAACGGTAGATCCATG 58.551 50.000 0.00 0.00 35.57 3.66
309 310 2.430694 TGAGACAACGGTAGATCCATGG 59.569 50.000 4.97 4.97 35.57 3.66
310 311 1.762957 AGACAACGGTAGATCCATGGG 59.237 52.381 13.02 0.00 35.57 4.00
311 312 0.837272 ACAACGGTAGATCCATGGGG 59.163 55.000 13.02 0.00 35.57 4.96
320 321 4.490266 TCCATGGGGATGACCGAA 57.510 55.556 13.02 0.00 38.64 4.30
321 322 2.220953 TCCATGGGGATGACCGAAG 58.779 57.895 13.02 0.00 38.64 3.79
323 324 1.344953 CCATGGGGATGACCGAAGGA 61.345 60.000 2.85 0.00 46.09 3.36
324 325 2.666066 CCATGGGGATGACCGAAGGAT 61.666 57.143 2.85 0.00 46.09 3.24
325 326 4.779748 CCATGGGGATGACCGAAGGATG 62.780 59.091 2.85 0.00 46.09 3.51
348 349 7.354025 TGCTTTGCATCAGAAACATTTATTG 57.646 32.000 0.00 0.00 31.71 1.90
349 350 7.153315 TGCTTTGCATCAGAAACATTTATTGA 58.847 30.769 0.00 0.00 31.71 2.57
350 351 7.656542 TGCTTTGCATCAGAAACATTTATTGAA 59.343 29.630 0.00 0.00 31.71 2.69
351 352 8.497554 GCTTTGCATCAGAAACATTTATTGAAA 58.502 29.630 0.00 0.00 0.00 2.69
352 353 9.801714 CTTTGCATCAGAAACATTTATTGAAAC 57.198 29.630 0.00 0.00 0.00 2.78
353 354 9.545105 TTTGCATCAGAAACATTTATTGAAACT 57.455 25.926 0.00 0.00 0.00 2.66
354 355 8.746922 TGCATCAGAAACATTTATTGAAACTC 57.253 30.769 0.00 0.00 0.00 3.01
355 356 8.358895 TGCATCAGAAACATTTATTGAAACTCA 58.641 29.630 0.00 0.00 0.00 3.41
356 357 9.362539 GCATCAGAAACATTTATTGAAACTCAT 57.637 29.630 0.00 0.00 0.00 2.90
395 396 8.746328 AAACGAACATTTTTCTTAAATTTGCG 57.254 26.923 0.00 0.00 0.00 4.85
396 397 7.687005 ACGAACATTTTTCTTAAATTTGCGA 57.313 28.000 0.00 0.00 0.00 5.10
397 398 8.121167 ACGAACATTTTTCTTAAATTTGCGAA 57.879 26.923 0.00 0.60 0.00 4.70
398 399 8.053653 ACGAACATTTTTCTTAAATTTGCGAAC 58.946 29.630 0.00 0.00 0.00 3.95
399 400 8.053072 CGAACATTTTTCTTAAATTTGCGAACA 58.947 29.630 0.00 0.00 0.00 3.18
400 401 9.695884 GAACATTTTTCTTAAATTTGCGAACAA 57.304 25.926 0.00 3.61 0.00 2.83
412 413 4.935885 TTGCGAACAAATTTTGCAAAGT 57.064 31.818 12.41 6.68 42.04 2.66
413 414 4.935885 TGCGAACAAATTTTGCAAAGTT 57.064 31.818 13.60 13.60 31.69 2.66
414 415 4.645956 TGCGAACAAATTTTGCAAAGTTG 58.354 34.783 24.86 24.86 31.69 3.16
415 416 4.153117 TGCGAACAAATTTTGCAAAGTTGT 59.847 33.333 25.80 25.80 32.63 3.32
416 417 4.491591 GCGAACAAATTTTGCAAAGTTGTG 59.508 37.500 29.20 23.76 32.06 3.33
417 418 5.669848 GCGAACAAATTTTGCAAAGTTGTGA 60.670 36.000 29.20 11.50 32.06 3.58
418 419 6.302615 CGAACAAATTTTGCAAAGTTGTGAA 58.697 32.000 29.20 10.89 32.06 3.18
419 420 6.794158 CGAACAAATTTTGCAAAGTTGTGAAA 59.206 30.769 29.20 10.27 32.06 2.69
420 421 7.481169 CGAACAAATTTTGCAAAGTTGTGAAAT 59.519 29.630 29.20 19.90 32.06 2.17
421 422 9.127006 GAACAAATTTTGCAAAGTTGTGAAATT 57.873 25.926 29.20 19.65 36.89 1.82
422 423 9.473640 AACAAATTTTGCAAAGTTGTGAAATTT 57.526 22.222 29.20 19.56 40.72 1.82
423 424 9.473640 ACAAATTTTGCAAAGTTGTGAAATTTT 57.526 22.222 28.50 11.96 39.62 1.82
424 425 9.728774 CAAATTTTGCAAAGTTGTGAAATTTTG 57.271 25.926 19.16 7.85 39.62 2.44
425 426 9.688592 AAATTTTGCAAAGTTGTGAAATTTTGA 57.311 22.222 19.16 0.00 39.18 2.69
426 427 9.688592 AATTTTGCAAAGTTGTGAAATTTTGAA 57.311 22.222 17.96 0.00 34.40 2.69
427 428 9.688592 ATTTTGCAAAGTTGTGAAATTTTGAAA 57.311 22.222 12.41 3.89 33.50 2.69
428 429 9.520204 TTTTGCAAAGTTGTGAAATTTTGAAAA 57.480 22.222 12.41 8.78 36.67 2.29
429 430 9.520204 TTTGCAAAGTTGTGAAATTTTGAAAAA 57.480 22.222 8.05 6.78 35.94 1.94
511 512 6.399639 AAAATAGAAAGCCGAAAAGAACCA 57.600 33.333 0.00 0.00 0.00 3.67
512 513 5.629079 AATAGAAAGCCGAAAAGAACCAG 57.371 39.130 0.00 0.00 0.00 4.00
513 514 3.208747 AGAAAGCCGAAAAGAACCAGA 57.791 42.857 0.00 0.00 0.00 3.86
514 515 3.551846 AGAAAGCCGAAAAGAACCAGAA 58.448 40.909 0.00 0.00 0.00 3.02
515 516 3.951680 AGAAAGCCGAAAAGAACCAGAAA 59.048 39.130 0.00 0.00 0.00 2.52
516 517 4.401202 AGAAAGCCGAAAAGAACCAGAAAA 59.599 37.500 0.00 0.00 0.00 2.29
517 518 4.729227 AAGCCGAAAAGAACCAGAAAAA 57.271 36.364 0.00 0.00 0.00 1.94
552 553 2.447408 AAAACGGTTCAGGGAAAGGT 57.553 45.000 0.00 0.00 0.00 3.50
553 554 2.447408 AAACGGTTCAGGGAAAGGTT 57.553 45.000 0.00 0.00 0.00 3.50
554 555 1.977056 AACGGTTCAGGGAAAGGTTC 58.023 50.000 0.00 0.00 0.00 3.62
564 565 0.677288 GGAAAGGTTCCCAAAACCGG 59.323 55.000 0.00 0.00 44.30 5.28
565 566 1.405872 GAAAGGTTCCCAAAACCGGT 58.594 50.000 0.00 0.00 44.82 5.28
566 567 1.758280 GAAAGGTTCCCAAAACCGGTT 59.242 47.619 15.86 15.86 44.82 4.44
567 568 2.752075 AAGGTTCCCAAAACCGGTTA 57.248 45.000 22.60 0.29 44.82 2.85
568 569 1.985473 AGGTTCCCAAAACCGGTTAC 58.015 50.000 22.60 13.74 44.82 2.50
569 570 1.214923 AGGTTCCCAAAACCGGTTACA 59.785 47.619 22.60 0.00 44.82 2.41
570 571 1.337703 GGTTCCCAAAACCGGTTACAC 59.662 52.381 22.60 10.62 0.00 2.90
571 572 1.002576 GTTCCCAAAACCGGTTACACG 60.003 52.381 22.60 9.11 0.00 4.49
572 573 1.165284 TCCCAAAACCGGTTACACGC 61.165 55.000 22.60 0.00 0.00 5.34
573 574 1.445716 CCCAAAACCGGTTACACGCA 61.446 55.000 22.60 0.00 0.00 5.24
574 575 0.317186 CCAAAACCGGTTACACGCAC 60.317 55.000 22.60 0.00 0.00 5.34
575 576 0.658897 CAAAACCGGTTACACGCACT 59.341 50.000 22.60 0.00 0.00 4.40
576 577 1.865970 CAAAACCGGTTACACGCACTA 59.134 47.619 22.60 0.00 0.00 2.74
577 578 2.460757 AAACCGGTTACACGCACTAT 57.539 45.000 22.60 0.00 0.00 2.12
578 579 2.460757 AACCGGTTACACGCACTATT 57.539 45.000 20.78 0.00 0.00 1.73
579 580 2.460757 ACCGGTTACACGCACTATTT 57.539 45.000 0.00 0.00 0.00 1.40
583 584 3.679025 CCGGTTACACGCACTATTTGTAA 59.321 43.478 0.00 0.00 34.17 2.41
584 585 4.201647 CCGGTTACACGCACTATTTGTAAG 60.202 45.833 0.00 0.00 36.60 2.34
647 650 2.703409 CCTCGAAATTCGCCGCAG 59.297 61.111 10.93 2.71 40.21 5.18
648 651 1.809619 CCTCGAAATTCGCCGCAGA 60.810 57.895 10.93 0.00 40.21 4.26
665 668 1.000283 CAGAGAGCGGCGAATAGGATT 60.000 52.381 12.98 0.00 0.00 3.01
669 672 1.531578 GAGCGGCGAATAGGATTTTCC 59.468 52.381 12.98 0.00 36.58 3.13
678 684 6.363473 GCGAATAGGATTTTCCTTTGTATCG 58.637 40.000 0.59 6.58 46.91 2.92
679 685 6.565999 GCGAATAGGATTTTCCTTTGTATCGG 60.566 42.308 0.59 0.00 46.91 4.18
726 732 5.585047 GGCTGGTTACAGTTAAGATACCTTG 59.415 44.000 0.00 0.00 46.62 3.61
753 759 0.767375 TTCTGAGCCCAACAGAAGCT 59.233 50.000 0.00 0.00 45.44 3.74
886 910 2.295349 TGTGTCCTCACCGTACTTCTTC 59.705 50.000 0.00 0.00 43.26 2.87
895 919 5.295152 TCACCGTACTTCTTCCTTTTCTTC 58.705 41.667 0.00 0.00 0.00 2.87
903 927 5.600069 ACTTCTTCCTTTTCTTCCTTGCATT 59.400 36.000 0.00 0.00 0.00 3.56
963 987 0.105555 CAGGCTCCAGATCTCCCTCT 60.106 60.000 0.00 0.00 0.00 3.69
964 988 0.188342 AGGCTCCAGATCTCCCTCTC 59.812 60.000 0.00 0.00 0.00 3.20
973 997 0.476338 ATCTCCCTCTCTCGCAGCTA 59.524 55.000 0.00 0.00 0.00 3.32
1044 1068 1.166531 AAACCTTGGCACTGCTCGTC 61.167 55.000 0.00 0.00 0.00 4.20
1116 1140 8.422973 ACGTGTTGTTATCTTGTTTGTAACTA 57.577 30.769 0.00 0.00 31.37 2.24
1212 1236 1.670791 TTGTCGTTGGTTGGTCTTCC 58.329 50.000 0.00 0.00 0.00 3.46
1250 1274 3.386078 ACACATGTGTTATTTGTTGGGCA 59.614 39.130 25.76 0.00 41.83 5.36
1254 1278 5.469421 ACATGTGTTATTTGTTGGGCATTTG 59.531 36.000 0.00 0.00 0.00 2.32
1261 1285 7.038302 TGTTATTTGTTGGGCATTTGGGTATTA 60.038 33.333 0.00 0.00 0.00 0.98
1294 1318 9.294030 GAATGATTTTATTCTGCAAGTAGTTGG 57.706 33.333 12.19 0.00 34.87 3.77
1314 1338 4.585879 TGGGAAGCAGATTGTTTAGTACC 58.414 43.478 0.00 0.00 0.00 3.34
1335 1359 6.751514 ACCAGTTGCGTTCATGATTATTAA 57.248 33.333 0.00 0.00 0.00 1.40
1405 1434 2.095567 ACTCTGCTTGCAAATTACAGCG 60.096 45.455 0.00 3.98 0.00 5.18
1452 1482 7.906611 TGTGATTTTACACTTTTGAACGATG 57.093 32.000 0.00 0.00 40.87 3.84
1495 1525 4.154195 GGTGCAAGATAGTTGTGGTACTTG 59.846 45.833 0.00 0.00 38.07 3.16
1517 1547 6.494666 TGATTGTTTAATCTCGTATCCCCT 57.505 37.500 0.00 0.00 42.56 4.79
1524 1554 2.691409 TCTCGTATCCCCTGCAAAAG 57.309 50.000 0.00 0.00 0.00 2.27
1525 1555 2.184533 TCTCGTATCCCCTGCAAAAGA 58.815 47.619 0.00 0.00 0.00 2.52
1631 1661 5.215160 AGAAAACTAACAGCTTGAATTGCG 58.785 37.500 0.00 0.00 35.28 4.85
1632 1662 3.559238 AACTAACAGCTTGAATTGCGG 57.441 42.857 0.00 0.00 35.28 5.69
1633 1663 2.504367 ACTAACAGCTTGAATTGCGGT 58.496 42.857 0.00 0.00 40.27 5.68
1697 1727 4.217118 CCTCTGTTCTTTATGCTTGCTGTT 59.783 41.667 0.00 0.00 0.00 3.16
1706 1736 1.629013 TGCTTGCTGTTCTCGTATCG 58.371 50.000 0.00 0.00 0.00 2.92
1732 1762 7.335171 GTGCTATTCATGCCATGAGTTATCATA 59.665 37.037 8.06 1.75 44.58 2.15
1773 1803 2.521708 ACCAGTTGTTGCCCCAGC 60.522 61.111 0.00 0.00 40.48 4.85
2082 2112 8.819974 GCCAATTTGTAATGTTCCATCTTATTG 58.180 33.333 0.00 0.00 0.00 1.90
2157 2188 1.549203 ATTGCCGGAGAATGCACTTT 58.451 45.000 5.05 0.00 37.18 2.66
2218 2249 9.699703 TTGTCTTGTAAGTTGTTTTAGCTTTTT 57.300 25.926 0.00 0.00 31.79 1.94
2284 2315 7.148086 TGTGTTGATATTAACATGCTTTCCTCC 60.148 37.037 15.28 0.98 42.02 4.30
2351 2382 0.931662 GCTGCTCTTGCGTTGTTGTG 60.932 55.000 0.00 0.00 43.34 3.33
2372 2403 9.601217 GTTGTGAAGGTGACAAATCTACTATAT 57.399 33.333 0.00 0.00 35.15 0.86
2570 2601 7.629652 GCATTTTGGTCCTCGGTTTCATTTATA 60.630 37.037 0.00 0.00 0.00 0.98
2597 2628 1.136305 TCTCGGGCTTCCTATTGTTCG 59.864 52.381 0.00 0.00 0.00 3.95
2630 2661 2.554462 GTGAGCCTAGCAGATATCGTCA 59.446 50.000 0.00 0.00 0.00 4.35
2781 2812 6.215121 TCCATTTGACATCATTGTGTTTGTC 58.785 36.000 0.00 0.00 39.11 3.18
2787 2818 5.415389 TGACATCATTGTGTTTGTCCCTATG 59.585 40.000 0.00 0.00 38.12 2.23
2808 2958 7.822334 CCTATGACTTATATTTGGTTATGGCGA 59.178 37.037 0.00 0.00 0.00 5.54
2813 2963 8.044060 ACTTATATTTGGTTATGGCGATGATG 57.956 34.615 0.00 0.00 0.00 3.07
2822 2973 6.597672 TGGTTATGGCGATGATGGTATAAATC 59.402 38.462 0.00 0.00 0.00 2.17
2859 3010 3.311966 GCTCCAAATTGTTTGAGCTGAC 58.688 45.455 13.10 0.00 43.26 3.51
2863 3014 1.632589 AATTGTTTGAGCTGACCCCC 58.367 50.000 0.00 0.00 0.00 5.40
2891 3044 5.300969 TCAGTGTGCATTTAAGATGCTTC 57.699 39.130 17.58 13.01 44.79 3.86
2897 3050 5.066893 TGTGCATTTAAGATGCTTCCTCATC 59.933 40.000 17.58 0.00 44.79 2.92
2898 3051 4.581824 TGCATTTAAGATGCTTCCTCATCC 59.418 41.667 17.58 0.00 44.79 3.51
2971 3124 4.703379 TTGGGCTCCAAATTGTTTGAAT 57.297 36.364 4.37 0.00 40.92 2.57
2973 3126 4.640364 TGGGCTCCAAATTGTTTGAATTC 58.360 39.130 0.00 0.00 43.26 2.17
3038 3191 9.855021 TTTAGCTGCTATTTTCTTGATTTTACC 57.145 29.630 10.64 0.00 0.00 2.85
3039 3192 7.709149 AGCTGCTATTTTCTTGATTTTACCT 57.291 32.000 0.00 0.00 0.00 3.08
3040 3193 8.127150 AGCTGCTATTTTCTTGATTTTACCTT 57.873 30.769 0.00 0.00 0.00 3.50
3087 3240 5.637810 GTGAATTTGTACACGAGAATCCTCA 59.362 40.000 0.00 0.00 39.39 3.86
3115 3268 8.980143 ATATGCTGTAAATTTGTACAAACCAC 57.020 30.769 22.78 18.87 33.66 4.16
3119 3272 7.063544 TGCTGTAAATTTGTACAAACCACAAAC 59.936 33.333 22.78 18.16 45.74 2.93
3125 3278 3.887352 TGTACAAACCACAAACTGCCTA 58.113 40.909 0.00 0.00 0.00 3.93
3127 3280 5.622180 TGTACAAACCACAAACTGCCTATA 58.378 37.500 0.00 0.00 0.00 1.31
3130 3283 5.570320 ACAAACCACAAACTGCCTATAGAT 58.430 37.500 0.00 0.00 0.00 1.98
3134 3287 3.562973 CCACAAACTGCCTATAGATGCTG 59.437 47.826 0.00 3.99 0.00 4.41
3158 3311 5.975988 AGACATTTCTAGGCTTCCCATAA 57.024 39.130 0.00 0.00 0.00 1.90
3160 3313 6.915786 AGACATTTCTAGGCTTCCCATAAAT 58.084 36.000 0.00 0.00 0.00 1.40
3171 3324 4.339530 GCTTCCCATAAATGTTCCTTCTCC 59.660 45.833 0.00 0.00 0.00 3.71
3172 3325 5.760131 CTTCCCATAAATGTTCCTTCTCCT 58.240 41.667 0.00 0.00 0.00 3.69
3173 3326 5.796502 TCCCATAAATGTTCCTTCTCCTT 57.203 39.130 0.00 0.00 0.00 3.36
3183 3336 9.601810 AAATGTTCCTTCTCCTTAAACCTAAAT 57.398 29.630 0.00 0.00 0.00 1.40
3192 3345 8.562949 TCTCCTTAAACCTAAATGCCTATACT 57.437 34.615 0.00 0.00 0.00 2.12
3195 3348 9.984590 TCCTTAAACCTAAATGCCTATACTTTT 57.015 29.630 0.00 0.00 0.00 2.27
3201 3354 9.984590 AACCTAAATGCCTATACTTTTTCCTTA 57.015 29.630 0.00 0.00 0.00 2.69
3202 3355 9.984590 ACCTAAATGCCTATACTTTTTCCTTAA 57.015 29.630 0.00 0.00 0.00 1.85
3268 3432 7.840342 TGCACACATTTCAACAAAATTTAGT 57.160 28.000 0.00 0.00 35.32 2.24
3338 3502 9.598517 TTAGAGTCCAAACGAAGTAAAACTAAA 57.401 29.630 0.00 0.00 45.00 1.85
3412 3576 4.262164 GGCAAACAAGATCAATGTGAGGTT 60.262 41.667 5.09 0.00 0.00 3.50
3429 3593 0.240945 GTTTGGCTCCACGTCATTGG 59.759 55.000 0.00 0.00 38.10 3.16
3434 3598 0.729116 GCTCCACGTCATTGGTGATG 59.271 55.000 0.00 0.00 45.08 3.07
3457 3621 4.757019 ATGTTCTCATGATCTGCTCACT 57.243 40.909 0.00 0.00 36.48 3.41
3473 3643 3.054655 GCTCACTTGGGTCCCAATACTTA 60.055 47.826 24.03 7.36 43.07 2.24
3476 3646 6.147437 TCACTTGGGTCCCAATACTTAATT 57.853 37.500 24.03 0.00 43.07 1.40
3486 3656 4.027572 CAATACTTAATTGGGCCGTGTG 57.972 45.455 0.00 0.00 41.19 3.82
3487 3657 2.116827 TACTTAATTGGGCCGTGTGG 57.883 50.000 0.00 0.00 38.77 4.17
3497 3667 2.478746 CCGTGTGGCCGATTTTCG 59.521 61.111 0.00 0.00 40.07 3.46
3498 3668 2.322081 CCGTGTGGCCGATTTTCGT 61.322 57.895 0.00 0.00 38.40 3.85
3499 3669 1.154488 CGTGTGGCCGATTTTCGTG 60.154 57.895 0.00 0.00 38.40 4.35
3500 3670 1.837538 CGTGTGGCCGATTTTCGTGT 61.838 55.000 0.00 0.00 38.40 4.49
3501 3671 0.309612 GTGTGGCCGATTTTCGTGTT 59.690 50.000 0.00 0.00 38.40 3.32
3502 3672 1.025812 TGTGGCCGATTTTCGTGTTT 58.974 45.000 0.00 0.00 38.40 2.83
3503 3673 1.405821 TGTGGCCGATTTTCGTGTTTT 59.594 42.857 0.00 0.00 38.40 2.43
3504 3674 1.784283 GTGGCCGATTTTCGTGTTTTG 59.216 47.619 0.00 0.00 38.40 2.44
3505 3675 1.676529 TGGCCGATTTTCGTGTTTTGA 59.323 42.857 0.00 0.00 38.40 2.69
3506 3676 2.048498 GGCCGATTTTCGTGTTTTGAC 58.952 47.619 0.00 0.00 38.40 3.18
3507 3677 2.541999 GGCCGATTTTCGTGTTTTGACA 60.542 45.455 0.00 0.00 38.40 3.58
3508 3678 2.466205 GCCGATTTTCGTGTTTTGACAC 59.534 45.455 0.00 0.00 38.40 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.436292 GCCAGGAGTCTGCAGCAG 60.436 66.667 17.10 17.10 39.61 4.24
1 2 4.025858 GGCCAGGAGTCTGCAGCA 62.026 66.667 9.47 0.00 39.61 4.41
2 3 3.341202 ATGGCCAGGAGTCTGCAGC 62.341 63.158 13.05 4.26 39.61 5.25
3 4 1.451567 CATGGCCAGGAGTCTGCAG 60.452 63.158 13.35 7.63 39.61 4.41
5 6 0.179062 CTACATGGCCAGGAGTCTGC 60.179 60.000 26.87 0.00 39.61 4.26
6 7 1.489481 TCTACATGGCCAGGAGTCTG 58.511 55.000 26.87 12.74 40.59 3.51
7 8 2.090831 AGATCTACATGGCCAGGAGTCT 60.091 50.000 26.87 16.98 0.00 3.24
8 9 2.298729 GAGATCTACATGGCCAGGAGTC 59.701 54.545 26.87 15.05 0.00 3.36
9 10 2.324541 GAGATCTACATGGCCAGGAGT 58.675 52.381 26.87 18.36 0.00 3.85
10 11 1.622811 GGAGATCTACATGGCCAGGAG 59.377 57.143 26.87 15.90 0.00 3.69
11 12 1.062198 TGGAGATCTACATGGCCAGGA 60.062 52.381 26.87 13.40 0.00 3.86
12 13 1.347050 CTGGAGATCTACATGGCCAGG 59.653 57.143 17.55 17.55 39.30 4.45
13 14 1.347050 CCTGGAGATCTACATGGCCAG 59.653 57.143 13.05 13.00 41.88 4.85
14 15 1.427809 CCTGGAGATCTACATGGCCA 58.572 55.000 8.56 8.56 0.00 5.36
15 16 0.689623 CCCTGGAGATCTACATGGCC 59.310 60.000 15.56 0.00 0.00 5.36
16 17 0.689623 CCCCTGGAGATCTACATGGC 59.310 60.000 20.97 0.00 28.93 4.40
17 18 0.689623 GCCCCTGGAGATCTACATGG 59.310 60.000 19.76 19.76 0.00 3.66
18 19 0.689623 GGCCCCTGGAGATCTACATG 59.310 60.000 8.45 5.58 0.00 3.21
19 20 0.833834 CGGCCCCTGGAGATCTACAT 60.834 60.000 8.45 0.00 0.00 2.29
20 21 1.457643 CGGCCCCTGGAGATCTACA 60.458 63.158 7.60 7.60 0.00 2.74
21 22 2.210711 CCGGCCCCTGGAGATCTAC 61.211 68.421 0.00 0.00 0.00 2.59
22 23 1.740649 ATCCGGCCCCTGGAGATCTA 61.741 60.000 0.00 0.00 39.30 1.98
23 24 3.106859 ATCCGGCCCCTGGAGATCT 62.107 63.158 0.00 0.00 39.30 2.75
24 25 2.527875 ATCCGGCCCCTGGAGATC 60.528 66.667 0.00 0.00 39.30 2.75
25 26 2.851102 CATCCGGCCCCTGGAGAT 60.851 66.667 0.00 0.00 39.30 2.75
26 27 4.414956 ACATCCGGCCCCTGGAGA 62.415 66.667 0.00 0.00 39.30 3.71
27 28 3.866582 GACATCCGGCCCCTGGAG 61.867 72.222 0.00 0.00 39.30 3.86
38 39 2.876368 CTTCCAGGCACCGGACATCC 62.876 65.000 9.46 2.87 30.29 3.51
39 40 1.450312 CTTCCAGGCACCGGACATC 60.450 63.158 9.46 0.00 30.29 3.06
40 41 2.671070 CTTCCAGGCACCGGACAT 59.329 61.111 9.46 0.00 30.29 3.06
41 42 4.329545 GCTTCCAGGCACCGGACA 62.330 66.667 9.46 0.00 30.29 4.02
42 43 4.021925 AGCTTCCAGGCACCGGAC 62.022 66.667 9.46 0.00 30.29 4.79
43 44 4.020617 CAGCTTCCAGGCACCGGA 62.021 66.667 9.46 0.00 34.17 5.14
44 45 3.850098 AACAGCTTCCAGGCACCGG 62.850 63.158 0.00 0.00 34.17 5.28
45 46 2.281761 AACAGCTTCCAGGCACCG 60.282 61.111 0.00 0.00 34.17 4.94
46 47 0.538287 AAGAACAGCTTCCAGGCACC 60.538 55.000 0.00 0.00 28.17 5.01
47 48 0.595095 CAAGAACAGCTTCCAGGCAC 59.405 55.000 0.00 0.00 33.60 5.01
48 49 1.174712 GCAAGAACAGCTTCCAGGCA 61.175 55.000 0.00 0.00 33.60 4.75
49 50 1.583477 GCAAGAACAGCTTCCAGGC 59.417 57.895 0.00 0.00 33.60 4.85
50 51 0.251077 AGGCAAGAACAGCTTCCAGG 60.251 55.000 0.00 0.00 33.60 4.45
51 52 1.538950 GAAGGCAAGAACAGCTTCCAG 59.461 52.381 0.00 0.00 33.60 3.86
52 53 1.143684 AGAAGGCAAGAACAGCTTCCA 59.856 47.619 0.00 0.00 33.60 3.53
53 54 1.902938 AGAAGGCAAGAACAGCTTCC 58.097 50.000 0.00 0.00 33.60 3.46
54 55 2.227626 GGAAGAAGGCAAGAACAGCTTC 59.772 50.000 0.00 0.00 33.60 3.86
55 56 2.234143 GGAAGAAGGCAAGAACAGCTT 58.766 47.619 0.00 0.00 37.29 3.74
56 57 1.879796 CGGAAGAAGGCAAGAACAGCT 60.880 52.381 0.00 0.00 0.00 4.24
57 58 0.519077 CGGAAGAAGGCAAGAACAGC 59.481 55.000 0.00 0.00 0.00 4.40
58 59 1.884235 ACGGAAGAAGGCAAGAACAG 58.116 50.000 0.00 0.00 0.00 3.16
59 60 1.946768 CAACGGAAGAAGGCAAGAACA 59.053 47.619 0.00 0.00 0.00 3.18
60 61 1.266989 CCAACGGAAGAAGGCAAGAAC 59.733 52.381 0.00 0.00 0.00 3.01
61 62 1.133915 ACCAACGGAAGAAGGCAAGAA 60.134 47.619 0.00 0.00 33.12 2.52
62 63 0.472471 ACCAACGGAAGAAGGCAAGA 59.528 50.000 0.00 0.00 33.12 3.02
63 64 1.266989 GAACCAACGGAAGAAGGCAAG 59.733 52.381 0.00 0.00 33.12 4.01
64 65 1.133915 AGAACCAACGGAAGAAGGCAA 60.134 47.619 0.00 0.00 33.12 4.52
65 66 0.472471 AGAACCAACGGAAGAAGGCA 59.528 50.000 0.00 0.00 33.12 4.75
66 67 1.157585 GAGAACCAACGGAAGAAGGC 58.842 55.000 0.00 0.00 33.12 4.35
67 68 2.841442 AGAGAACCAACGGAAGAAGG 57.159 50.000 0.00 0.00 35.33 3.46
68 69 3.996480 AGAAGAGAACCAACGGAAGAAG 58.004 45.455 0.00 0.00 0.00 2.85
69 70 4.417426 AAGAAGAGAACCAACGGAAGAA 57.583 40.909 0.00 0.00 0.00 2.52
70 71 4.377897 GAAAGAAGAGAACCAACGGAAGA 58.622 43.478 0.00 0.00 0.00 2.87
71 72 3.184581 CGAAAGAAGAGAACCAACGGAAG 59.815 47.826 0.00 0.00 0.00 3.46
72 73 3.128349 CGAAAGAAGAGAACCAACGGAA 58.872 45.455 0.00 0.00 0.00 4.30
73 74 2.101917 ACGAAAGAAGAGAACCAACGGA 59.898 45.455 0.00 0.00 0.00 4.69
74 75 2.221055 CACGAAAGAAGAGAACCAACGG 59.779 50.000 0.00 0.00 0.00 4.44
75 76 2.221055 CCACGAAAGAAGAGAACCAACG 59.779 50.000 0.00 0.00 0.00 4.10
76 77 3.247886 GTCCACGAAAGAAGAGAACCAAC 59.752 47.826 0.00 0.00 0.00 3.77
77 78 3.134081 AGTCCACGAAAGAAGAGAACCAA 59.866 43.478 0.00 0.00 0.00 3.67
78 79 2.698797 AGTCCACGAAAGAAGAGAACCA 59.301 45.455 0.00 0.00 0.00 3.67
79 80 3.388345 AGTCCACGAAAGAAGAGAACC 57.612 47.619 0.00 0.00 0.00 3.62
80 81 3.495001 CCAAGTCCACGAAAGAAGAGAAC 59.505 47.826 0.00 0.00 0.00 3.01
81 82 3.134081 ACCAAGTCCACGAAAGAAGAGAA 59.866 43.478 0.00 0.00 0.00 2.87
82 83 2.698797 ACCAAGTCCACGAAAGAAGAGA 59.301 45.455 0.00 0.00 0.00 3.10
83 84 2.802816 CACCAAGTCCACGAAAGAAGAG 59.197 50.000 0.00 0.00 0.00 2.85
84 85 2.484770 CCACCAAGTCCACGAAAGAAGA 60.485 50.000 0.00 0.00 0.00 2.87
85 86 1.873591 CCACCAAGTCCACGAAAGAAG 59.126 52.381 0.00 0.00 0.00 2.85
86 87 1.961793 CCACCAAGTCCACGAAAGAA 58.038 50.000 0.00 0.00 0.00 2.52
87 88 0.534203 GCCACCAAGTCCACGAAAGA 60.534 55.000 0.00 0.00 0.00 2.52
88 89 0.535102 AGCCACCAAGTCCACGAAAG 60.535 55.000 0.00 0.00 0.00 2.62
89 90 0.106918 AAGCCACCAAGTCCACGAAA 60.107 50.000 0.00 0.00 0.00 3.46
90 91 0.817634 CAAGCCACCAAGTCCACGAA 60.818 55.000 0.00 0.00 0.00 3.85
91 92 1.227823 CAAGCCACCAAGTCCACGA 60.228 57.895 0.00 0.00 0.00 4.35
92 93 1.227823 TCAAGCCACCAAGTCCACG 60.228 57.895 0.00 0.00 0.00 4.94
93 94 1.172812 GGTCAAGCCACCAAGTCCAC 61.173 60.000 0.00 0.00 36.32 4.02
94 95 1.150536 GGTCAAGCCACCAAGTCCA 59.849 57.895 0.00 0.00 36.32 4.02
95 96 1.150536 TGGTCAAGCCACCAAGTCC 59.849 57.895 0.00 0.00 43.88 3.85
96 97 4.898607 TGGTCAAGCCACCAAGTC 57.101 55.556 0.00 0.00 43.88 3.01
104 105 1.133790 GCACATGAAGATGGTCAAGCC 59.866 52.381 0.00 0.00 33.39 4.35
105 106 1.814394 TGCACATGAAGATGGTCAAGC 59.186 47.619 0.00 0.00 33.39 4.01
106 107 3.066342 GGATGCACATGAAGATGGTCAAG 59.934 47.826 0.00 0.00 33.39 3.02
107 108 3.018856 GGATGCACATGAAGATGGTCAA 58.981 45.455 0.00 0.00 33.39 3.18
108 109 2.240414 AGGATGCACATGAAGATGGTCA 59.760 45.455 0.00 0.00 33.39 4.02
109 110 2.877168 GAGGATGCACATGAAGATGGTC 59.123 50.000 0.00 0.00 33.39 4.02
110 111 2.744166 CGAGGATGCACATGAAGATGGT 60.744 50.000 0.00 0.00 33.39 3.55
111 112 1.871676 CGAGGATGCACATGAAGATGG 59.128 52.381 0.00 0.00 33.39 3.51
112 113 1.871676 CCGAGGATGCACATGAAGATG 59.128 52.381 0.00 0.00 35.49 2.90
113 114 1.202734 CCCGAGGATGCACATGAAGAT 60.203 52.381 0.00 0.00 0.00 2.40
114 115 0.178767 CCCGAGGATGCACATGAAGA 59.821 55.000 0.00 0.00 0.00 2.87
115 116 0.178767 TCCCGAGGATGCACATGAAG 59.821 55.000 0.00 0.00 0.00 3.02
116 117 0.178767 CTCCCGAGGATGCACATGAA 59.821 55.000 0.00 0.00 0.00 2.57
117 118 1.825341 CTCCCGAGGATGCACATGA 59.175 57.895 0.00 0.00 0.00 3.07
118 119 4.451241 CTCCCGAGGATGCACATG 57.549 61.111 0.00 0.00 0.00 3.21
128 129 2.060980 CCAAGAGGACCCTCCCGAG 61.061 68.421 12.19 0.99 43.70 4.63
129 130 1.512201 TACCAAGAGGACCCTCCCGA 61.512 60.000 12.19 0.00 43.70 5.14
130 131 1.001248 TACCAAGAGGACCCTCCCG 59.999 63.158 12.19 4.20 43.70 5.14
131 132 0.981801 GGTACCAAGAGGACCCTCCC 60.982 65.000 7.15 2.22 43.70 4.30
132 133 0.042881 AGGTACCAAGAGGACCCTCC 59.957 60.000 15.94 0.00 43.70 4.30
133 134 2.842645 TAGGTACCAAGAGGACCCTC 57.157 55.000 15.94 7.98 43.03 4.30
134 135 3.013648 TGATTAGGTACCAAGAGGACCCT 59.986 47.826 15.94 0.00 40.21 4.34
135 136 3.381335 TGATTAGGTACCAAGAGGACCC 58.619 50.000 15.94 0.00 36.39 4.46
136 137 4.743955 GCATGATTAGGTACCAAGAGGACC 60.744 50.000 15.94 0.00 38.69 4.46
137 138 4.141711 TGCATGATTAGGTACCAAGAGGAC 60.142 45.833 15.94 0.00 38.69 3.85
138 139 4.037222 TGCATGATTAGGTACCAAGAGGA 58.963 43.478 15.94 0.00 38.69 3.71
139 140 4.130118 GTGCATGATTAGGTACCAAGAGG 58.870 47.826 15.94 0.00 42.21 3.69
140 141 4.769688 TGTGCATGATTAGGTACCAAGAG 58.230 43.478 15.94 0.00 0.00 2.85
141 142 4.835284 TGTGCATGATTAGGTACCAAGA 57.165 40.909 15.94 0.00 0.00 3.02
142 143 4.699735 TGTTGTGCATGATTAGGTACCAAG 59.300 41.667 15.94 0.00 0.00 3.61
143 144 4.657013 TGTTGTGCATGATTAGGTACCAA 58.343 39.130 15.94 6.95 0.00 3.67
144 145 4.293662 TGTTGTGCATGATTAGGTACCA 57.706 40.909 15.94 0.00 0.00 3.25
145 146 5.221048 GGAATGTTGTGCATGATTAGGTACC 60.221 44.000 2.73 2.73 37.96 3.34
146 147 5.504010 CGGAATGTTGTGCATGATTAGGTAC 60.504 44.000 0.00 0.00 37.96 3.34
147 148 4.574421 CGGAATGTTGTGCATGATTAGGTA 59.426 41.667 0.00 0.00 37.96 3.08
148 149 3.378112 CGGAATGTTGTGCATGATTAGGT 59.622 43.478 0.00 0.00 37.96 3.08
149 150 3.627123 TCGGAATGTTGTGCATGATTAGG 59.373 43.478 0.00 0.00 37.96 2.69
150 151 4.880886 TCGGAATGTTGTGCATGATTAG 57.119 40.909 0.00 0.00 37.96 1.73
151 152 4.699735 AGTTCGGAATGTTGTGCATGATTA 59.300 37.500 0.00 0.00 37.96 1.75
152 153 3.507233 AGTTCGGAATGTTGTGCATGATT 59.493 39.130 0.00 0.00 37.96 2.57
153 154 3.084039 AGTTCGGAATGTTGTGCATGAT 58.916 40.909 0.00 0.00 37.96 2.45
154 155 2.503331 AGTTCGGAATGTTGTGCATGA 58.497 42.857 0.00 0.00 37.96 3.07
155 156 2.995466 AGTTCGGAATGTTGTGCATG 57.005 45.000 0.00 0.00 37.96 4.06
156 157 3.440173 CCTAAGTTCGGAATGTTGTGCAT 59.560 43.478 0.00 0.00 40.03 3.96
157 158 2.811431 CCTAAGTTCGGAATGTTGTGCA 59.189 45.455 0.00 0.00 0.00 4.57
158 159 2.812011 ACCTAAGTTCGGAATGTTGTGC 59.188 45.455 0.00 0.00 0.00 4.57
159 160 5.235516 ACTACCTAAGTTCGGAATGTTGTG 58.764 41.667 0.00 0.00 33.35 3.33
160 161 5.479124 ACTACCTAAGTTCGGAATGTTGT 57.521 39.130 0.00 0.00 33.35 3.32
161 162 5.519206 GCTACTACCTAAGTTCGGAATGTTG 59.481 44.000 0.00 0.00 39.80 3.33
162 163 5.394993 GGCTACTACCTAAGTTCGGAATGTT 60.395 44.000 0.00 0.00 39.80 2.71
163 164 4.099113 GGCTACTACCTAAGTTCGGAATGT 59.901 45.833 0.00 0.00 39.80 2.71
164 165 4.098960 TGGCTACTACCTAAGTTCGGAATG 59.901 45.833 0.00 0.00 39.80 2.67
165 166 4.284178 TGGCTACTACCTAAGTTCGGAAT 58.716 43.478 0.00 0.00 39.80 3.01
166 167 3.700538 TGGCTACTACCTAAGTTCGGAA 58.299 45.455 0.00 0.00 39.80 4.30
167 168 3.370840 TGGCTACTACCTAAGTTCGGA 57.629 47.619 0.00 0.00 39.80 4.55
168 169 3.383825 ACATGGCTACTACCTAAGTTCGG 59.616 47.826 0.00 0.00 39.80 4.30
169 170 4.338682 AGACATGGCTACTACCTAAGTTCG 59.661 45.833 0.00 0.00 39.80 3.95
170 171 5.505985 CGAGACATGGCTACTACCTAAGTTC 60.506 48.000 0.00 0.00 39.80 3.01
171 172 4.338682 CGAGACATGGCTACTACCTAAGTT 59.661 45.833 0.00 0.00 39.80 2.66
172 173 3.884091 CGAGACATGGCTACTACCTAAGT 59.116 47.826 0.00 0.00 42.62 2.24
173 174 3.884091 ACGAGACATGGCTACTACCTAAG 59.116 47.826 0.00 0.00 0.00 2.18
174 175 3.630769 CACGAGACATGGCTACTACCTAA 59.369 47.826 0.00 0.00 0.00 2.69
175 176 3.118149 TCACGAGACATGGCTACTACCTA 60.118 47.826 0.00 0.00 0.00 3.08
176 177 2.025155 CACGAGACATGGCTACTACCT 58.975 52.381 0.00 0.00 0.00 3.08
177 178 2.022195 TCACGAGACATGGCTACTACC 58.978 52.381 0.00 0.00 0.00 3.18
178 179 2.033550 CCTCACGAGACATGGCTACTAC 59.966 54.545 0.00 0.00 0.00 2.73
179 180 2.092592 TCCTCACGAGACATGGCTACTA 60.093 50.000 0.00 0.00 0.00 1.82
180 181 1.107114 CCTCACGAGACATGGCTACT 58.893 55.000 0.00 0.00 0.00 2.57
181 182 1.103803 TCCTCACGAGACATGGCTAC 58.896 55.000 0.00 0.00 0.00 3.58
182 183 2.073252 ATCCTCACGAGACATGGCTA 57.927 50.000 0.00 0.00 0.00 3.93
183 184 1.198713 AATCCTCACGAGACATGGCT 58.801 50.000 0.00 0.00 0.00 4.75
184 185 2.890808 TAATCCTCACGAGACATGGC 57.109 50.000 0.00 0.00 0.00 4.40
185 186 6.151817 TCTCATATAATCCTCACGAGACATGG 59.848 42.308 0.00 0.00 0.00 3.66
186 187 7.150783 TCTCATATAATCCTCACGAGACATG 57.849 40.000 0.00 0.00 0.00 3.21
187 188 7.953005 ATCTCATATAATCCTCACGAGACAT 57.047 36.000 0.00 0.00 31.36 3.06
188 189 9.114952 GATATCTCATATAATCCTCACGAGACA 57.885 37.037 0.00 0.00 31.36 3.41
189 190 9.114952 TGATATCTCATATAATCCTCACGAGAC 57.885 37.037 3.98 0.00 31.36 3.36
190 191 9.114952 GTGATATCTCATATAATCCTCACGAGA 57.885 37.037 3.98 0.00 32.98 4.04
191 192 9.119418 AGTGATATCTCATATAATCCTCACGAG 57.881 37.037 3.98 0.00 32.98 4.18
204 205 9.733556 GACTTCTCTCCTTAGTGATATCTCATA 57.266 37.037 3.98 0.00 32.98 2.15
205 206 8.224025 TGACTTCTCTCCTTAGTGATATCTCAT 58.776 37.037 3.98 0.00 32.98 2.90
206 207 7.500892 GTGACTTCTCTCCTTAGTGATATCTCA 59.499 40.741 3.98 0.00 0.00 3.27
207 208 7.040686 GGTGACTTCTCTCCTTAGTGATATCTC 60.041 44.444 3.98 0.00 0.00 2.75
208 209 6.775629 GGTGACTTCTCTCCTTAGTGATATCT 59.224 42.308 3.98 0.00 0.00 1.98
209 210 6.775629 AGGTGACTTCTCTCCTTAGTGATATC 59.224 42.308 0.00 0.00 37.12 1.63
210 211 6.678547 AGGTGACTTCTCTCCTTAGTGATAT 58.321 40.000 0.00 0.00 37.12 1.63
211 212 6.080969 AGGTGACTTCTCTCCTTAGTGATA 57.919 41.667 0.00 0.00 37.12 2.15
212 213 4.941713 AGGTGACTTCTCTCCTTAGTGAT 58.058 43.478 0.00 0.00 37.12 3.06
213 214 4.337145 GAGGTGACTTCTCTCCTTAGTGA 58.663 47.826 0.00 0.00 44.43 3.41
214 215 3.127895 CGAGGTGACTTCTCTCCTTAGTG 59.872 52.174 0.00 0.00 44.43 2.74
215 216 3.349022 CGAGGTGACTTCTCTCCTTAGT 58.651 50.000 0.00 0.00 44.43 2.24
216 217 2.685897 CCGAGGTGACTTCTCTCCTTAG 59.314 54.545 0.00 0.00 44.43 2.18
217 218 2.041350 ACCGAGGTGACTTCTCTCCTTA 59.959 50.000 0.00 0.00 44.43 2.69
218 219 1.203075 ACCGAGGTGACTTCTCTCCTT 60.203 52.381 0.00 0.00 44.43 3.36
219 220 0.406361 ACCGAGGTGACTTCTCTCCT 59.594 55.000 0.00 0.00 44.43 3.69
220 221 0.812549 GACCGAGGTGACTTCTCTCC 59.187 60.000 0.00 0.00 44.43 3.71
221 222 1.741145 GAGACCGAGGTGACTTCTCTC 59.259 57.143 0.00 0.00 44.43 3.20
222 223 1.828979 GAGACCGAGGTGACTTCTCT 58.171 55.000 0.00 0.00 44.43 3.10
223 224 0.448593 CGAGACCGAGGTGACTTCTC 59.551 60.000 0.00 0.00 44.43 2.87
224 225 0.036448 TCGAGACCGAGGTGACTTCT 59.964 55.000 0.00 0.00 44.43 2.85
225 226 2.552802 TCGAGACCGAGGTGACTTC 58.447 57.895 0.00 0.00 44.43 3.01
226 227 4.815489 TCGAGACCGAGGTGACTT 57.185 55.556 0.00 0.00 44.43 3.01
234 235 0.531090 GCTAGAGCTCTCGAGACCGA 60.531 60.000 22.17 0.00 39.27 4.69
235 236 1.938861 GCTAGAGCTCTCGAGACCG 59.061 63.158 22.17 3.93 34.79 4.79
252 253 1.093159 CCCATGACAAGAGCAAGAGC 58.907 55.000 0.00 0.00 42.56 4.09
253 254 2.354259 GACCCATGACAAGAGCAAGAG 58.646 52.381 0.00 0.00 0.00 2.85
254 255 1.003580 GGACCCATGACAAGAGCAAGA 59.996 52.381 0.00 0.00 0.00 3.02
255 256 1.004044 AGGACCCATGACAAGAGCAAG 59.996 52.381 0.00 0.00 0.00 4.01
256 257 1.003580 GAGGACCCATGACAAGAGCAA 59.996 52.381 0.00 0.00 0.00 3.91
257 258 0.615331 GAGGACCCATGACAAGAGCA 59.385 55.000 0.00 0.00 0.00 4.26
258 259 0.908198 AGAGGACCCATGACAAGAGC 59.092 55.000 0.00 0.00 0.00 4.09
259 260 2.568956 TCAAGAGGACCCATGACAAGAG 59.431 50.000 0.00 0.00 0.00 2.85
260 261 2.619931 TCAAGAGGACCCATGACAAGA 58.380 47.619 0.00 0.00 0.00 3.02
261 262 3.276857 CATCAAGAGGACCCATGACAAG 58.723 50.000 0.00 0.00 0.00 3.16
262 263 2.644299 ACATCAAGAGGACCCATGACAA 59.356 45.455 0.00 0.00 0.00 3.18
263 264 2.269023 ACATCAAGAGGACCCATGACA 58.731 47.619 0.00 0.00 0.00 3.58
264 265 3.356529 AACATCAAGAGGACCCATGAC 57.643 47.619 0.00 0.00 0.00 3.06
265 266 3.561960 CCAAACATCAAGAGGACCCATGA 60.562 47.826 0.00 0.00 0.00 3.07
266 267 2.756760 CCAAACATCAAGAGGACCCATG 59.243 50.000 0.00 0.00 0.00 3.66
267 268 2.379907 ACCAAACATCAAGAGGACCCAT 59.620 45.455 0.00 0.00 0.00 4.00
268 269 1.780309 ACCAAACATCAAGAGGACCCA 59.220 47.619 0.00 0.00 0.00 4.51
269 270 2.162681 CACCAAACATCAAGAGGACCC 58.837 52.381 0.00 0.00 0.00 4.46
270 271 3.077359 CTCACCAAACATCAAGAGGACC 58.923 50.000 0.00 0.00 0.00 4.46
271 272 3.748568 GTCTCACCAAACATCAAGAGGAC 59.251 47.826 0.00 0.00 0.00 3.85
272 273 3.390967 TGTCTCACCAAACATCAAGAGGA 59.609 43.478 0.00 0.00 0.00 3.71
273 274 3.743521 TGTCTCACCAAACATCAAGAGG 58.256 45.455 0.00 0.00 0.00 3.69
274 275 4.319046 CGTTGTCTCACCAAACATCAAGAG 60.319 45.833 0.00 0.00 0.00 2.85
275 276 3.559655 CGTTGTCTCACCAAACATCAAGA 59.440 43.478 0.00 0.00 0.00 3.02
276 277 3.303990 CCGTTGTCTCACCAAACATCAAG 60.304 47.826 0.00 0.00 0.00 3.02
277 278 2.616376 CCGTTGTCTCACCAAACATCAA 59.384 45.455 0.00 0.00 0.00 2.57
278 279 2.217750 CCGTTGTCTCACCAAACATCA 58.782 47.619 0.00 0.00 0.00 3.07
279 280 2.218603 ACCGTTGTCTCACCAAACATC 58.781 47.619 0.00 0.00 0.00 3.06
280 281 2.341846 ACCGTTGTCTCACCAAACAT 57.658 45.000 0.00 0.00 0.00 2.71
281 282 2.431419 TCTACCGTTGTCTCACCAAACA 59.569 45.455 0.00 0.00 0.00 2.83
282 283 3.102052 TCTACCGTTGTCTCACCAAAC 57.898 47.619 0.00 0.00 0.00 2.93
283 284 3.306502 GGATCTACCGTTGTCTCACCAAA 60.307 47.826 0.00 0.00 0.00 3.28
284 285 2.232941 GGATCTACCGTTGTCTCACCAA 59.767 50.000 0.00 0.00 0.00 3.67
285 286 1.822990 GGATCTACCGTTGTCTCACCA 59.177 52.381 0.00 0.00 0.00 4.17
286 287 1.822990 TGGATCTACCGTTGTCTCACC 59.177 52.381 0.00 0.00 42.61 4.02
287 288 3.448686 CATGGATCTACCGTTGTCTCAC 58.551 50.000 0.00 0.00 42.61 3.51
288 289 2.430694 CCATGGATCTACCGTTGTCTCA 59.569 50.000 5.56 0.00 42.61 3.27
289 290 2.224066 CCCATGGATCTACCGTTGTCTC 60.224 54.545 15.22 0.00 42.61 3.36
290 291 1.762957 CCCATGGATCTACCGTTGTCT 59.237 52.381 15.22 0.00 42.61 3.41
291 292 1.202651 CCCCATGGATCTACCGTTGTC 60.203 57.143 15.22 0.00 42.61 3.18
292 293 0.837272 CCCCATGGATCTACCGTTGT 59.163 55.000 15.22 0.00 42.61 3.32
293 294 1.128200 TCCCCATGGATCTACCGTTG 58.872 55.000 15.22 0.00 42.61 4.10
294 295 3.646932 TCCCCATGGATCTACCGTT 57.353 52.632 15.22 0.00 42.61 4.44
304 305 1.149174 CCTTCGGTCATCCCCATGG 59.851 63.158 4.14 4.14 0.00 3.66
305 306 0.767375 ATCCTTCGGTCATCCCCATG 59.233 55.000 0.00 0.00 0.00 3.66
306 307 0.767375 CATCCTTCGGTCATCCCCAT 59.233 55.000 0.00 0.00 0.00 4.00
307 308 1.983119 GCATCCTTCGGTCATCCCCA 61.983 60.000 0.00 0.00 0.00 4.96
308 309 1.227973 GCATCCTTCGGTCATCCCC 60.228 63.158 0.00 0.00 0.00 4.81
309 310 0.181350 AAGCATCCTTCGGTCATCCC 59.819 55.000 0.00 0.00 0.00 3.85
310 311 1.672881 CAAAGCATCCTTCGGTCATCC 59.327 52.381 0.00 0.00 0.00 3.51
311 312 1.064654 GCAAAGCATCCTTCGGTCATC 59.935 52.381 0.00 0.00 0.00 2.92
312 313 1.098050 GCAAAGCATCCTTCGGTCAT 58.902 50.000 0.00 0.00 0.00 3.06
313 314 0.250684 TGCAAAGCATCCTTCGGTCA 60.251 50.000 0.00 0.00 31.71 4.02
314 315 2.555123 TGCAAAGCATCCTTCGGTC 58.445 52.632 0.00 0.00 31.71 4.79
315 316 4.819783 TGCAAAGCATCCTTCGGT 57.180 50.000 0.00 0.00 31.71 4.69
324 325 7.153315 TCAATAAATGTTTCTGATGCAAAGCA 58.847 30.769 0.00 0.00 44.86 3.91
325 326 7.585286 TCAATAAATGTTTCTGATGCAAAGC 57.415 32.000 0.00 0.00 0.00 3.51
326 327 9.801714 GTTTCAATAAATGTTTCTGATGCAAAG 57.198 29.630 0.00 0.00 0.00 2.77
327 328 9.545105 AGTTTCAATAAATGTTTCTGATGCAAA 57.455 25.926 0.00 0.00 0.00 3.68
328 329 9.195411 GAGTTTCAATAAATGTTTCTGATGCAA 57.805 29.630 0.00 0.00 0.00 4.08
329 330 8.358895 TGAGTTTCAATAAATGTTTCTGATGCA 58.641 29.630 0.00 0.00 0.00 3.96
330 331 8.746922 TGAGTTTCAATAAATGTTTCTGATGC 57.253 30.769 0.00 0.00 0.00 3.91
369 370 9.204792 CGCAAATTTAAGAAAAATGTTCGTTTT 57.795 25.926 0.00 0.00 32.94 2.43
370 371 8.596380 TCGCAAATTTAAGAAAAATGTTCGTTT 58.404 25.926 0.00 0.00 0.00 3.60
371 372 8.121167 TCGCAAATTTAAGAAAAATGTTCGTT 57.879 26.923 0.00 0.00 0.00 3.85
372 373 7.687005 TCGCAAATTTAAGAAAAATGTTCGT 57.313 28.000 0.00 0.00 0.00 3.85
373 374 8.053072 TGTTCGCAAATTTAAGAAAAATGTTCG 58.947 29.630 8.50 0.00 0.00 3.95
374 375 9.695884 TTGTTCGCAAATTTAAGAAAAATGTTC 57.304 25.926 8.50 0.00 33.58 3.18
391 392 4.935885 ACTTTGCAAAATTTGTTCGCAA 57.064 31.818 13.84 11.39 40.59 4.85
392 393 4.153117 ACAACTTTGCAAAATTTGTTCGCA 59.847 33.333 23.67 0.00 0.00 5.10
393 394 4.491591 CACAACTTTGCAAAATTTGTTCGC 59.508 37.500 25.54 0.00 0.00 4.70
394 395 5.852005 TCACAACTTTGCAAAATTTGTTCG 58.148 33.333 25.54 18.86 0.00 3.95
395 396 8.672214 ATTTCACAACTTTGCAAAATTTGTTC 57.328 26.923 25.54 0.00 0.00 3.18
396 397 9.473640 AAATTTCACAACTTTGCAAAATTTGTT 57.526 22.222 25.54 17.92 40.34 2.83
397 398 9.473640 AAAATTTCACAACTTTGCAAAATTTGT 57.526 22.222 23.67 23.67 40.62 2.83
398 399 9.728774 CAAAATTTCACAACTTTGCAAAATTTG 57.271 25.926 22.71 22.71 40.62 2.32
399 400 9.688592 TCAAAATTTCACAACTTTGCAAAATTT 57.311 22.222 13.84 10.30 41.79 1.82
400 401 9.688592 TTCAAAATTTCACAACTTTGCAAAATT 57.311 22.222 13.84 6.70 37.27 1.82
401 402 9.688592 TTTCAAAATTTCACAACTTTGCAAAAT 57.311 22.222 13.84 0.00 31.17 1.82
402 403 9.520204 TTTTCAAAATTTCACAACTTTGCAAAA 57.480 22.222 13.84 0.00 0.00 2.44
403 404 9.520204 TTTTTCAAAATTTCACAACTTTGCAAA 57.480 22.222 12.14 12.14 0.00 3.68
487 488 6.811954 TGGTTCTTTTCGGCTTTCTATTTTT 58.188 32.000 0.00 0.00 0.00 1.94
488 489 6.264518 TCTGGTTCTTTTCGGCTTTCTATTTT 59.735 34.615 0.00 0.00 0.00 1.82
489 490 5.768164 TCTGGTTCTTTTCGGCTTTCTATTT 59.232 36.000 0.00 0.00 0.00 1.40
490 491 5.313712 TCTGGTTCTTTTCGGCTTTCTATT 58.686 37.500 0.00 0.00 0.00 1.73
491 492 4.906618 TCTGGTTCTTTTCGGCTTTCTAT 58.093 39.130 0.00 0.00 0.00 1.98
492 493 4.345859 TCTGGTTCTTTTCGGCTTTCTA 57.654 40.909 0.00 0.00 0.00 2.10
493 494 3.208747 TCTGGTTCTTTTCGGCTTTCT 57.791 42.857 0.00 0.00 0.00 2.52
494 495 3.982576 TTCTGGTTCTTTTCGGCTTTC 57.017 42.857 0.00 0.00 0.00 2.62
495 496 4.729227 TTTTCTGGTTCTTTTCGGCTTT 57.271 36.364 0.00 0.00 0.00 3.51
496 497 4.729227 TTTTTCTGGTTCTTTTCGGCTT 57.271 36.364 0.00 0.00 0.00 4.35
532 533 2.742348 ACCTTTCCCTGAACCGTTTTT 58.258 42.857 0.00 0.00 0.00 1.94
533 534 2.447408 ACCTTTCCCTGAACCGTTTT 57.553 45.000 0.00 0.00 0.00 2.43
534 535 2.304092 GAACCTTTCCCTGAACCGTTT 58.696 47.619 0.00 0.00 0.00 3.60
535 536 1.478105 GGAACCTTTCCCTGAACCGTT 60.478 52.381 0.00 0.00 44.30 4.44
536 537 0.109913 GGAACCTTTCCCTGAACCGT 59.890 55.000 0.00 0.00 44.30 4.83
537 538 2.942641 GGAACCTTTCCCTGAACCG 58.057 57.895 0.00 0.00 44.30 4.44
551 552 1.002576 CGTGTAACCGGTTTTGGGAAC 60.003 52.381 27.64 16.74 0.00 3.62
552 553 1.307097 CGTGTAACCGGTTTTGGGAA 58.693 50.000 27.64 2.44 0.00 3.97
553 554 1.165284 GCGTGTAACCGGTTTTGGGA 61.165 55.000 27.64 3.34 0.00 4.37
554 555 1.283487 GCGTGTAACCGGTTTTGGG 59.717 57.895 27.64 13.91 0.00 4.12
555 556 0.317186 GTGCGTGTAACCGGTTTTGG 60.317 55.000 27.64 13.54 0.00 3.28
556 557 0.658897 AGTGCGTGTAACCGGTTTTG 59.341 50.000 27.64 13.74 0.00 2.44
557 558 2.237393 TAGTGCGTGTAACCGGTTTT 57.763 45.000 27.64 4.12 0.00 2.43
558 559 2.460757 ATAGTGCGTGTAACCGGTTT 57.539 45.000 27.64 9.90 0.00 3.27
559 560 2.460757 AATAGTGCGTGTAACCGGTT 57.539 45.000 25.64 25.64 0.00 4.44
560 561 2.070783 CAAATAGTGCGTGTAACCGGT 58.929 47.619 0.00 0.00 0.00 5.28
561 562 2.070783 ACAAATAGTGCGTGTAACCGG 58.929 47.619 0.00 0.00 0.00 5.28
562 563 4.386652 ACTTACAAATAGTGCGTGTAACCG 59.613 41.667 0.00 0.00 34.77 4.44
563 564 5.390145 CCACTTACAAATAGTGCGTGTAACC 60.390 44.000 0.00 0.00 41.28 2.85
564 565 5.390145 CCCACTTACAAATAGTGCGTGTAAC 60.390 44.000 0.00 0.00 41.28 2.50
565 566 4.691685 CCCACTTACAAATAGTGCGTGTAA 59.308 41.667 0.00 0.00 41.28 2.41
566 567 4.247258 CCCACTTACAAATAGTGCGTGTA 58.753 43.478 0.00 0.00 41.28 2.90
567 568 3.071479 CCCACTTACAAATAGTGCGTGT 58.929 45.455 0.00 0.00 41.28 4.49
568 569 2.159572 GCCCACTTACAAATAGTGCGTG 60.160 50.000 0.00 0.00 41.28 5.34
569 570 2.081462 GCCCACTTACAAATAGTGCGT 58.919 47.619 0.00 0.00 41.28 5.24
570 571 1.400494 GGCCCACTTACAAATAGTGCG 59.600 52.381 0.00 0.00 41.28 5.34
571 572 1.400494 CGGCCCACTTACAAATAGTGC 59.600 52.381 0.00 0.00 41.28 4.40
572 573 2.014128 CCGGCCCACTTACAAATAGTG 58.986 52.381 0.00 0.00 42.06 2.74
573 574 1.680860 GCCGGCCCACTTACAAATAGT 60.681 52.381 18.11 0.00 0.00 2.12
574 575 1.021968 GCCGGCCCACTTACAAATAG 58.978 55.000 18.11 0.00 0.00 1.73
575 576 0.394625 GGCCGGCCCACTTACAAATA 60.395 55.000 36.64 0.00 0.00 1.40
576 577 1.680989 GGCCGGCCCACTTACAAAT 60.681 57.895 36.64 0.00 0.00 2.32
577 578 2.282603 GGCCGGCCCACTTACAAA 60.283 61.111 36.64 0.00 0.00 2.83
615 617 1.067250 GAGGGATCGCACAGAGAGC 59.933 63.158 12.83 0.00 0.00 4.09
616 618 1.098129 TCGAGGGATCGCACAGAGAG 61.098 60.000 12.83 0.00 0.00 3.20
627 629 1.887707 GCGGCGAATTTCGAGGGAT 60.888 57.895 22.25 0.00 43.74 3.85
629 631 2.813179 CTGCGGCGAATTTCGAGGG 61.813 63.158 22.25 10.67 43.74 4.30
630 632 1.756375 CTCTGCGGCGAATTTCGAGG 61.756 60.000 22.25 12.99 43.74 4.63
647 650 2.156343 AAATCCTATTCGCCGCTCTC 57.844 50.000 0.00 0.00 0.00 3.20
648 651 2.484889 GAAAATCCTATTCGCCGCTCT 58.515 47.619 0.00 0.00 0.00 4.09
665 668 0.393267 CCGGGCCGATACAAAGGAAA 60.393 55.000 30.79 0.00 0.00 3.13
669 672 1.881252 CGACCGGGCCGATACAAAG 60.881 63.158 30.79 11.41 0.00 2.77
679 685 3.956317 AAAAACGCACGACCGGGC 61.956 61.111 6.32 0.00 41.95 6.13
886 910 6.101650 AGGTTAAATGCAAGGAAGAAAAGG 57.898 37.500 0.00 0.00 0.00 3.11
895 919 4.552767 CGATTAGCGAGGTTAAATGCAAGG 60.553 45.833 0.00 0.00 44.57 3.61
963 987 2.045242 ACCGAGGTAGCTGCGAGA 60.045 61.111 0.00 0.00 0.00 4.04
964 988 2.103143 CACCGAGGTAGCTGCGAG 59.897 66.667 0.00 0.82 0.00 5.03
973 997 2.852075 TCCAAAGGCCACCGAGGT 60.852 61.111 5.01 0.00 40.61 3.85
1019 1043 1.600413 GCAGTGCCAAGGTTTCTTTCG 60.600 52.381 2.85 0.00 0.00 3.46
1044 1068 3.931468 CCACTGCAATCAAGACTACAGAG 59.069 47.826 0.00 0.00 0.00 3.35
1212 1236 6.150976 ACACATGTGTATCAGTGTTAATTGGG 59.849 38.462 29.66 0.00 42.06 4.12
1279 1303 2.158682 TGCTTCCCAACTACTTGCAGAA 60.159 45.455 0.00 0.00 0.00 3.02
1294 1318 5.246307 ACTGGTACTAAACAATCTGCTTCC 58.754 41.667 0.00 0.00 0.00 3.46
1405 1434 1.745653 GAGGGCACACTATTGAAAGCC 59.254 52.381 0.00 0.00 37.71 4.35
1495 1525 5.179555 GCAGGGGATACGAGATTAAACAATC 59.820 44.000 0.00 0.00 37.60 2.67
1542 1572 7.148086 CCAGCATGTTACATTAACCTACATGTT 60.148 37.037 2.30 11.50 44.80 2.71
1543 1573 6.318648 CCAGCATGTTACATTAACCTACATGT 59.681 38.462 2.69 2.69 44.80 3.21
1551 1581 5.878116 TCAGGTACCAGCATGTTACATTAAC 59.122 40.000 15.94 0.00 39.11 2.01
1631 1661 7.042992 GCAGTTTAAAAATCTGTGTTTACCACC 60.043 37.037 6.27 0.00 43.85 4.61
1632 1662 7.704899 AGCAGTTTAAAAATCTGTGTTTACCAC 59.295 33.333 6.27 0.00 44.78 4.16
1633 1663 7.704472 CAGCAGTTTAAAAATCTGTGTTTACCA 59.296 33.333 6.27 0.00 0.00 3.25
1697 1727 3.565516 GCATGAATAGCACGATACGAGA 58.434 45.455 0.00 0.00 0.00 4.04
1706 1736 5.471116 TGATAACTCATGGCATGAATAGCAC 59.529 40.000 28.50 18.27 39.11 4.40
1731 1761 1.271926 GGGCTTCTTCCCTGCAAAGTA 60.272 52.381 0.00 0.00 43.13 2.24
1732 1762 0.540597 GGGCTTCTTCCCTGCAAAGT 60.541 55.000 0.00 0.00 43.13 2.66
1773 1803 3.470888 CCGGGGTAGGTGCCTCTG 61.471 72.222 0.00 0.00 0.00 3.35
2082 2112 6.912591 GTGGAATACATGCTGCAATTAAGTAC 59.087 38.462 6.36 0.00 0.00 2.73
2218 2249 7.976826 ACAAACGTGAAGAATAACTACAACAA 58.023 30.769 0.00 0.00 0.00 2.83
2219 2250 7.515528 CGACAAACGTGAAGAATAACTACAACA 60.516 37.037 0.00 0.00 37.22 3.33
2220 2251 6.784227 CGACAAACGTGAAGAATAACTACAAC 59.216 38.462 0.00 0.00 37.22 3.32
2222 2253 6.442487 CGACAAACGTGAAGAATAACTACA 57.558 37.500 0.00 0.00 37.22 2.74
2372 2403 5.030147 ACCTGTCCTTTGGTCATATCAGTA 58.970 41.667 0.00 0.00 29.18 2.74
2380 2411 3.662759 AAGAAACCTGTCCTTTGGTCA 57.337 42.857 0.00 0.00 35.17 4.02
2570 2601 5.104485 ACAATAGGAAGCCCGAGAATAAAGT 60.104 40.000 0.00 0.00 37.58 2.66
2580 2611 1.933853 CTTCGAACAATAGGAAGCCCG 59.066 52.381 0.00 0.00 37.58 6.13
2597 2628 3.187432 GCTAGGCTCACACTTGAAACTTC 59.813 47.826 0.00 0.00 0.00 3.01
2630 2661 4.546674 ACAAAGGTTCAGAGGTCCAAATT 58.453 39.130 0.00 0.00 0.00 1.82
2674 2705 5.262588 TCAGCTCTTGATGATTTACGCTA 57.737 39.130 0.00 0.00 33.24 4.26
2732 2763 1.533756 GCAACAGCGACAGAGCAAAAA 60.534 47.619 0.00 0.00 40.15 1.94
2781 2812 7.065803 CGCCATAACCAAATATAAGTCATAGGG 59.934 40.741 0.00 0.00 0.00 3.53
2787 2818 7.667043 TCATCGCCATAACCAAATATAAGTC 57.333 36.000 0.00 0.00 0.00 3.01
2813 2963 7.113544 GCGCTATTTCTTTTGCTGATTTATACC 59.886 37.037 0.00 0.00 0.00 2.73
2822 2973 2.162208 TGGAGCGCTATTTCTTTTGCTG 59.838 45.455 11.50 0.00 31.88 4.41
2863 3014 6.183360 GCATCTTAAATGCACACTGAATTTGG 60.183 38.462 14.05 0.00 44.00 3.28
2876 3029 4.581824 TGGATGAGGAAGCATCTTAAATGC 59.418 41.667 12.09 12.09 43.25 3.56
2891 3044 0.835276 TCACAGGCATCTGGATGAGG 59.165 55.000 13.96 5.24 44.99 3.86
2897 3050 2.082231 CAGAACTTCACAGGCATCTGG 58.918 52.381 0.00 0.00 44.99 3.86
2898 3051 3.001414 CTCAGAACTTCACAGGCATCTG 58.999 50.000 0.00 0.00 46.10 2.90
3038 3191 3.801050 CACATATGCTCCTTCTCGTGAAG 59.199 47.826 18.13 18.13 46.82 3.02
3039 3192 3.785486 CACATATGCTCCTTCTCGTGAA 58.215 45.455 1.58 0.00 0.00 3.18
3040 3193 3.443099 CACATATGCTCCTTCTCGTGA 57.557 47.619 1.58 0.00 0.00 4.35
3063 3216 5.637810 TGAGGATTCTCGTGTACAAATTCAC 59.362 40.000 0.00 0.00 42.79 3.18
3092 3245 6.810911 TGTGGTTTGTACAAATTTACAGCAT 58.189 32.000 23.11 0.00 33.50 3.79
3113 3266 4.445453 TCAGCATCTATAGGCAGTTTGTG 58.555 43.478 0.00 0.00 33.96 3.33
3115 3268 5.236047 GTCTTCAGCATCTATAGGCAGTTTG 59.764 44.000 0.00 0.00 33.96 2.93
3119 3272 4.597404 TGTCTTCAGCATCTATAGGCAG 57.403 45.455 0.00 0.00 33.96 4.85
3125 3278 6.043012 AGCCTAGAAATGTCTTCAGCATCTAT 59.957 38.462 0.00 0.00 35.12 1.98
3127 3280 4.163839 AGCCTAGAAATGTCTTCAGCATCT 59.836 41.667 0.00 0.00 35.12 2.90
3130 3283 3.988976 AGCCTAGAAATGTCTTCAGCA 57.011 42.857 0.00 0.00 35.12 4.41
3134 3287 4.222124 TGGGAAGCCTAGAAATGTCTTC 57.778 45.455 0.00 0.00 35.12 2.87
3158 3311 9.025041 CATTTAGGTTTAAGGAGAAGGAACATT 57.975 33.333 0.00 0.00 0.00 2.71
3160 3313 6.433093 GCATTTAGGTTTAAGGAGAAGGAACA 59.567 38.462 0.00 0.00 0.00 3.18
3173 3326 9.984590 AGGAAAAAGTATAGGCATTTAGGTTTA 57.015 29.630 0.00 0.00 0.00 2.01
3242 3406 8.550376 ACTAAATTTTGTTGAAATGTGTGCATC 58.450 29.630 0.00 0.00 37.98 3.91
3294 3458 9.927668 GGACTCTAATTTCCATTTCAATTTGAA 57.072 29.630 7.74 7.74 34.03 2.69
3295 3459 9.087871 TGGACTCTAATTTCCATTTCAATTTGA 57.912 29.630 0.00 0.00 36.96 2.69
3296 3460 9.709495 TTGGACTCTAATTTCCATTTCAATTTG 57.291 29.630 0.00 0.00 41.65 2.32
3298 3462 9.710900 GTTTGGACTCTAATTTCCATTTCAATT 57.289 29.630 0.00 0.00 41.65 2.32
3299 3463 8.028938 CGTTTGGACTCTAATTTCCATTTCAAT 58.971 33.333 0.00 0.00 41.65 2.57
3300 3464 7.229707 TCGTTTGGACTCTAATTTCCATTTCAA 59.770 33.333 0.00 0.00 41.65 2.69
3301 3465 6.712998 TCGTTTGGACTCTAATTTCCATTTCA 59.287 34.615 0.00 0.00 41.65 2.69
3302 3466 7.141100 TCGTTTGGACTCTAATTTCCATTTC 57.859 36.000 0.00 0.00 41.65 2.17
3303 3467 7.230712 ACTTCGTTTGGACTCTAATTTCCATTT 59.769 33.333 0.00 0.00 41.65 2.32
3304 3468 6.715264 ACTTCGTTTGGACTCTAATTTCCATT 59.285 34.615 0.00 0.00 41.65 3.16
3305 3469 6.238648 ACTTCGTTTGGACTCTAATTTCCAT 58.761 36.000 0.00 0.00 41.65 3.41
3306 3470 5.617252 ACTTCGTTTGGACTCTAATTTCCA 58.383 37.500 0.00 0.00 40.30 3.53
3307 3471 7.662604 TTACTTCGTTTGGACTCTAATTTCC 57.337 36.000 0.00 0.00 0.00 3.13
3308 3472 9.378597 GTTTTACTTCGTTTGGACTCTAATTTC 57.621 33.333 0.00 0.00 0.00 2.17
3309 3473 9.117183 AGTTTTACTTCGTTTGGACTCTAATTT 57.883 29.630 0.00 0.00 0.00 1.82
3310 3474 8.672823 AGTTTTACTTCGTTTGGACTCTAATT 57.327 30.769 0.00 0.00 0.00 1.40
3311 3475 9.768662 TTAGTTTTACTTCGTTTGGACTCTAAT 57.231 29.630 0.00 0.00 0.00 1.73
3312 3476 9.598517 TTTAGTTTTACTTCGTTTGGACTCTAA 57.401 29.630 0.00 0.00 0.00 2.10
3313 3477 9.598517 TTTTAGTTTTACTTCGTTTGGACTCTA 57.401 29.630 0.00 0.00 0.00 2.43
3314 3478 8.496707 TTTTAGTTTTACTTCGTTTGGACTCT 57.503 30.769 0.00 0.00 0.00 3.24
3315 3479 9.726232 ATTTTTAGTTTTACTTCGTTTGGACTC 57.274 29.630 0.00 0.00 0.00 3.36
3346 3510 6.959671 TCTTGCTTTTGTGTTTTTACCAAG 57.040 33.333 0.00 0.00 0.00 3.61
3347 3511 6.931840 AGTTCTTGCTTTTGTGTTTTTACCAA 59.068 30.769 0.00 0.00 0.00 3.67
3349 3513 6.961359 AGTTCTTGCTTTTGTGTTTTTACC 57.039 33.333 0.00 0.00 0.00 2.85
3400 3564 1.144708 TGGAGCCAAACCTCACATTGA 59.855 47.619 0.00 0.00 33.47 2.57
3412 3576 0.888736 CACCAATGACGTGGAGCCAA 60.889 55.000 0.00 0.00 41.65 4.52
3450 3614 3.667476 TTGGGACCCAAGTGAGCA 58.333 55.556 22.74 0.00 38.75 4.26
3482 3652 0.309612 AACACGAAAATCGGCCACAC 59.690 50.000 2.24 0.00 45.59 3.82
3486 3656 2.048498 GTCAAAACACGAAAATCGGCC 58.952 47.619 4.66 0.00 45.59 6.13
3487 3657 2.466205 GTGTCAAAACACGAAAATCGGC 59.534 45.455 4.66 0.00 45.84 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.