Multiple sequence alignment - TraesCS2B01G262500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G262500 chr2B 100.000 2682 0 0 1 2682 345289815 345292496 0.000000e+00 4953.0
1 TraesCS2B01G262500 chr2B 92.593 540 39 1 983 1521 340419212 340418673 0.000000e+00 774.0
2 TraesCS2B01G262500 chr7A 88.880 2644 216 38 80 2682 448077351 448074745 0.000000e+00 3182.0
3 TraesCS2B01G262500 chr5A 88.586 2637 237 36 80 2682 40354802 40352196 0.000000e+00 3144.0
4 TraesCS2B01G262500 chr4B 91.374 2052 157 13 643 2682 664312637 664314680 0.000000e+00 2791.0
5 TraesCS2B01G262500 chr4B 90.511 1802 155 13 893 2682 542041063 542039266 0.000000e+00 2366.0
6 TraesCS2B01G262500 chr4B 82.985 1769 245 36 935 2682 187072707 187074440 0.000000e+00 1548.0
7 TraesCS2B01G262500 chr4B 93.636 110 4 2 643 752 542041165 542041059 7.680000e-36 161.0
8 TraesCS2B01G262500 chr4B 97.826 46 0 1 729 774 664312789 664312833 7.960000e-11 78.7
9 TraesCS2B01G262500 chr6B 91.015 2059 154 12 644 2682 57461965 57464012 0.000000e+00 2748.0
10 TraesCS2B01G262500 chr6B 88.889 144 16 0 82 225 57461480 57461623 7.630000e-41 178.0
11 TraesCS2B01G262500 chr5B 90.706 2055 162 17 643 2682 134932576 134930536 0.000000e+00 2710.0
12 TraesCS2B01G262500 chr5B 85.651 453 50 9 80 525 134933066 134932622 1.880000e-126 462.0
13 TraesCS2B01G262500 chr4A 89.892 2038 167 16 670 2682 605072322 605070299 0.000000e+00 2586.0
14 TraesCS2B01G262500 chr2D 90.319 1725 140 15 982 2682 398630156 398628435 0.000000e+00 2235.0
15 TraesCS2B01G262500 chr2D 90.566 477 34 7 516 986 398631995 398631524 2.930000e-174 621.0
16 TraesCS2B01G262500 chr2D 82.998 447 52 7 80 525 398632464 398632041 1.510000e-102 383.0
17 TraesCS2B01G262500 chr2D 97.059 34 1 0 80 113 336346804 336346771 1.040000e-04 58.4
18 TraesCS2B01G262500 chr1A 83.774 567 72 18 80 636 468058810 468058254 1.100000e-143 520.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G262500 chr2B 345289815 345292496 2681 False 4953.000000 4953 100.0000 1 2682 1 chr2B.!!$F1 2681
1 TraesCS2B01G262500 chr2B 340418673 340419212 539 True 774.000000 774 92.5930 983 1521 1 chr2B.!!$R1 538
2 TraesCS2B01G262500 chr7A 448074745 448077351 2606 True 3182.000000 3182 88.8800 80 2682 1 chr7A.!!$R1 2602
3 TraesCS2B01G262500 chr5A 40352196 40354802 2606 True 3144.000000 3144 88.5860 80 2682 1 chr5A.!!$R1 2602
4 TraesCS2B01G262500 chr4B 187072707 187074440 1733 False 1548.000000 1548 82.9850 935 2682 1 chr4B.!!$F1 1747
5 TraesCS2B01G262500 chr4B 664312637 664314680 2043 False 1434.850000 2791 94.6000 643 2682 2 chr4B.!!$F2 2039
6 TraesCS2B01G262500 chr4B 542039266 542041165 1899 True 1263.500000 2366 92.0735 643 2682 2 chr4B.!!$R1 2039
7 TraesCS2B01G262500 chr6B 57461480 57464012 2532 False 1463.000000 2748 89.9520 82 2682 2 chr6B.!!$F1 2600
8 TraesCS2B01G262500 chr5B 134930536 134933066 2530 True 1586.000000 2710 88.1785 80 2682 2 chr5B.!!$R1 2602
9 TraesCS2B01G262500 chr4A 605070299 605072322 2023 True 2586.000000 2586 89.8920 670 2682 1 chr4A.!!$R1 2012
10 TraesCS2B01G262500 chr2D 398628435 398632464 4029 True 1079.666667 2235 87.9610 80 2682 3 chr2D.!!$R2 2602
11 TraesCS2B01G262500 chr1A 468058254 468058810 556 True 520.000000 520 83.7740 80 636 1 chr1A.!!$R1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.179234 TGTCCGCTCAACCTCAACAA 59.821 50.0 0.0 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 3410 1.097232 TCTGCATTATGTGGTGCTGC 58.903 50.0 0.0 0.0 41.78 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.893544 CTTGCCATAGCTCTCCCATG 58.106 55.000 0.00 0.00 40.80 3.66
20 21 1.142465 CTTGCCATAGCTCTCCCATGT 59.858 52.381 0.00 0.00 40.80 3.21
21 22 0.761187 TGCCATAGCTCTCCCATGTC 59.239 55.000 0.00 0.00 40.80 3.06
22 23 0.761187 GCCATAGCTCTCCCATGTCA 59.239 55.000 0.00 0.00 35.50 3.58
23 24 1.141657 GCCATAGCTCTCCCATGTCAA 59.858 52.381 0.00 0.00 35.50 3.18
24 25 2.843701 CCATAGCTCTCCCATGTCAAC 58.156 52.381 0.00 0.00 0.00 3.18
25 26 2.437281 CCATAGCTCTCCCATGTCAACT 59.563 50.000 0.00 0.00 0.00 3.16
26 27 3.464907 CATAGCTCTCCCATGTCAACTG 58.535 50.000 0.00 0.00 0.00 3.16
27 28 1.356124 AGCTCTCCCATGTCAACTGT 58.644 50.000 0.00 0.00 0.00 3.55
28 29 1.277557 AGCTCTCCCATGTCAACTGTC 59.722 52.381 0.00 0.00 0.00 3.51
29 30 1.277557 GCTCTCCCATGTCAACTGTCT 59.722 52.381 0.00 0.00 0.00 3.41
30 31 2.497675 GCTCTCCCATGTCAACTGTCTA 59.502 50.000 0.00 0.00 0.00 2.59
31 32 3.055819 GCTCTCCCATGTCAACTGTCTAA 60.056 47.826 0.00 0.00 0.00 2.10
32 33 4.499183 CTCTCCCATGTCAACTGTCTAAC 58.501 47.826 0.00 0.00 0.00 2.34
33 34 3.901222 TCTCCCATGTCAACTGTCTAACA 59.099 43.478 0.00 0.00 0.00 2.41
34 35 4.346709 TCTCCCATGTCAACTGTCTAACAA 59.653 41.667 0.00 0.00 0.00 2.83
35 36 4.385825 TCCCATGTCAACTGTCTAACAAC 58.614 43.478 0.00 0.00 0.00 3.32
36 37 3.502211 CCCATGTCAACTGTCTAACAACC 59.498 47.826 0.00 0.00 0.00 3.77
37 38 3.186409 CCATGTCAACTGTCTAACAACCG 59.814 47.826 0.00 0.00 0.00 4.44
38 39 2.828877 TGTCAACTGTCTAACAACCGG 58.171 47.619 0.00 0.00 0.00 5.28
39 40 2.431419 TGTCAACTGTCTAACAACCGGA 59.569 45.455 9.46 0.00 0.00 5.14
40 41 3.057734 GTCAACTGTCTAACAACCGGAG 58.942 50.000 9.46 1.96 0.00 4.63
41 42 2.696707 TCAACTGTCTAACAACCGGAGT 59.303 45.455 9.46 2.78 0.00 3.85
42 43 3.890756 TCAACTGTCTAACAACCGGAGTA 59.109 43.478 9.46 0.00 0.00 2.59
43 44 3.930634 ACTGTCTAACAACCGGAGTAC 57.069 47.619 9.46 2.31 0.00 2.73
44 45 2.560105 ACTGTCTAACAACCGGAGTACC 59.440 50.000 9.46 0.00 0.00 3.34
45 46 2.824341 CTGTCTAACAACCGGAGTACCT 59.176 50.000 9.46 0.00 0.00 3.08
46 47 2.821969 TGTCTAACAACCGGAGTACCTC 59.178 50.000 9.46 0.00 0.00 3.85
47 48 2.165234 GTCTAACAACCGGAGTACCTCC 59.835 54.545 9.46 0.00 46.44 4.30
54 55 2.904131 GGAGTACCTCCCAGCTGC 59.096 66.667 8.66 0.00 44.36 5.25
55 56 2.736826 GGAGTACCTCCCAGCTGCC 61.737 68.421 8.66 0.00 44.36 4.85
56 57 2.689034 AGTACCTCCCAGCTGCCC 60.689 66.667 8.66 0.00 0.00 5.36
57 58 3.798511 GTACCTCCCAGCTGCCCC 61.799 72.222 8.66 0.00 0.00 5.80
58 59 4.346889 TACCTCCCAGCTGCCCCA 62.347 66.667 8.66 0.00 0.00 4.96
59 60 3.658346 TACCTCCCAGCTGCCCCAT 62.658 63.158 8.66 0.00 0.00 4.00
60 61 4.517934 CCTCCCAGCTGCCCCATG 62.518 72.222 8.66 0.00 0.00 3.66
64 65 4.772231 CCAGCTGCCCCATGCCTT 62.772 66.667 8.66 0.00 40.16 4.35
65 66 3.458163 CAGCTGCCCCATGCCTTG 61.458 66.667 0.00 0.00 40.16 3.61
66 67 3.988678 AGCTGCCCCATGCCTTGT 61.989 61.111 0.00 0.00 40.16 3.16
67 68 2.999063 GCTGCCCCATGCCTTGTT 60.999 61.111 0.00 0.00 40.16 2.83
68 69 2.586293 GCTGCCCCATGCCTTGTTT 61.586 57.895 0.00 0.00 40.16 2.83
69 70 1.257055 GCTGCCCCATGCCTTGTTTA 61.257 55.000 0.00 0.00 40.16 2.01
70 71 0.819582 CTGCCCCATGCCTTGTTTAG 59.180 55.000 0.00 0.00 40.16 1.85
71 72 0.407528 TGCCCCATGCCTTGTTTAGA 59.592 50.000 0.00 0.00 40.16 2.10
72 73 0.817654 GCCCCATGCCTTGTTTAGAC 59.182 55.000 0.00 0.00 0.00 2.59
73 74 1.890573 GCCCCATGCCTTGTTTAGACA 60.891 52.381 0.00 0.00 0.00 3.41
74 75 2.524306 CCCCATGCCTTGTTTAGACAA 58.476 47.619 0.00 0.00 43.23 3.18
114 115 3.148279 GACGTCGAGGAGGCCCAT 61.148 66.667 12.85 0.00 33.88 4.00
157 158 0.179234 TGTCCGCTCAACCTCAACAA 59.821 50.000 0.00 0.00 0.00 2.83
158 159 1.202758 TGTCCGCTCAACCTCAACAAT 60.203 47.619 0.00 0.00 0.00 2.71
159 160 1.197721 GTCCGCTCAACCTCAACAATG 59.802 52.381 0.00 0.00 0.00 2.82
164 165 2.586425 CTCAACCTCAACAATGGTGGT 58.414 47.619 0.00 0.00 36.57 4.16
172 173 2.092158 TCAACAATGGTGGTTGAGGACA 60.092 45.455 0.00 0.00 46.95 4.02
177 178 3.814504 ATGGTGGTTGAGGACAATCTT 57.185 42.857 0.00 0.00 37.92 2.40
196 203 2.359850 GACAAGATGGCACCGGCA 60.360 61.111 0.00 0.00 43.71 5.69
200 207 3.628646 AAGATGGCACCGGCAGGAC 62.629 63.158 10.86 0.43 42.43 3.85
228 235 3.036084 GTGCCGACACCGACACTG 61.036 66.667 0.00 0.00 44.12 3.66
229 236 3.220658 TGCCGACACCGACACTGA 61.221 61.111 0.00 0.00 38.22 3.41
230 237 2.261671 GCCGACACCGACACTGAT 59.738 61.111 0.00 0.00 38.22 2.90
233 240 1.372872 CGACACCGACACTGATGCA 60.373 57.895 0.00 0.00 38.22 3.96
253 260 3.368531 GCATTCGTCTACCTCCAAGAACT 60.369 47.826 0.00 0.00 0.00 3.01
257 264 2.288825 CGTCTACCTCCAAGAACTTGCA 60.289 50.000 8.81 0.00 39.16 4.08
258 265 3.740115 GTCTACCTCCAAGAACTTGCAA 58.260 45.455 8.81 0.00 39.16 4.08
267 274 2.689983 CAAGAACTTGCAACTCCAACCT 59.310 45.455 0.00 0.00 33.45 3.50
277 284 1.420430 ACTCCAACCTCCTTCAACGA 58.580 50.000 0.00 0.00 0.00 3.85
287 294 1.623311 TCCTTCAACGAGGCAGAATCA 59.377 47.619 0.00 0.00 36.71 2.57
292 299 0.620556 AACGAGGCAGAATCATGGGT 59.379 50.000 0.00 0.00 0.00 4.51
300 307 2.514592 AATCATGGGTGCCGCTCG 60.515 61.111 0.00 0.00 0.00 5.03
312 319 1.654954 GCCGCTCGAACTCCTCTACA 61.655 60.000 0.00 0.00 0.00 2.74
329 336 1.756024 CACCCGGTTACAAGGTGGA 59.244 57.895 13.24 0.00 46.01 4.02
337 344 1.072266 TTACAAGGTGGACCATGGCT 58.928 50.000 13.04 0.00 38.92 4.75
341 348 3.064324 GGTGGACCATGGCTGTGC 61.064 66.667 13.04 0.00 35.64 4.57
407 414 3.071206 TCCTGCTCCTGCGAGGAC 61.071 66.667 1.25 1.10 40.06 3.85
417 424 1.378646 TGCGAGGACCAGATCGACT 60.379 57.895 5.85 0.00 41.40 4.18
426 433 1.607801 CCAGATCGACTCCACCAGCA 61.608 60.000 0.00 0.00 0.00 4.41
457 464 1.203052 CAAAGCATCCAAAGCGGTGAT 59.797 47.619 0.00 0.00 37.01 3.06
515 523 7.148356 GCATGAACTGATCTGTTTGATTCTGTA 60.148 37.037 17.78 0.20 35.14 2.74
517 525 8.260270 TGAACTGATCTGTTTGATTCTGTATG 57.740 34.615 17.78 0.00 35.14 2.39
518 526 7.879677 TGAACTGATCTGTTTGATTCTGTATGT 59.120 33.333 17.78 0.00 35.14 2.29
524 538 9.317936 GATCTGTTTGATTCTGTATGTGTATGA 57.682 33.333 0.00 0.00 35.14 2.15
638 704 9.740710 AGGATAGAAGTTTTATATACCCATTGC 57.259 33.333 0.00 0.00 0.00 3.56
639 705 8.957466 GGATAGAAGTTTTATATACCCATTGCC 58.043 37.037 0.00 0.00 0.00 4.52
640 706 9.740710 GATAGAAGTTTTATATACCCATTGCCT 57.259 33.333 0.00 0.00 0.00 4.75
653 719 3.592059 CCATTGCCTTGAATTGGAACAG 58.408 45.455 0.00 0.00 42.39 3.16
684 750 2.295349 GGAGTTAGAATGCCATGCCATG 59.705 50.000 0.00 0.00 0.00 3.66
697 763 5.124645 GCCATGCCATGAATTTATTTCCAA 58.875 37.500 6.18 0.00 33.04 3.53
854 925 8.067784 TCTGTAACTTTTACAAAGCGATTTCTG 58.932 33.333 0.00 0.00 0.00 3.02
870 941 6.584954 CGATTTCTGTGACTGTTTCTGTAAG 58.415 40.000 0.00 0.00 0.00 2.34
871 942 6.201044 CGATTTCTGTGACTGTTTCTGTAAGT 59.799 38.462 0.00 0.00 33.76 2.24
929 1000 8.144478 TCTGGTTGTGCTATATAGAGAATTGTC 58.856 37.037 14.16 0.00 0.00 3.18
956 1039 3.902261 CTTGTGCAGTGATACAAGCAA 57.098 42.857 20.58 1.72 44.81 3.91
957 1040 4.430137 CTTGTGCAGTGATACAAGCAAT 57.570 40.909 20.58 0.00 44.81 3.56
958 1041 3.835378 TGTGCAGTGATACAAGCAATG 57.165 42.857 0.00 0.00 38.91 2.82
959 1042 2.488937 TGTGCAGTGATACAAGCAATGG 59.511 45.455 0.00 0.00 38.91 3.16
960 1043 1.473677 TGCAGTGATACAAGCAATGGC 59.526 47.619 0.00 0.00 41.61 4.40
961 1044 1.202336 GCAGTGATACAAGCAATGGCC 60.202 52.381 0.00 0.00 42.56 5.36
962 1045 1.064505 CAGTGATACAAGCAATGGCCG 59.935 52.381 0.00 0.00 42.56 6.13
963 1046 1.065491 AGTGATACAAGCAATGGCCGA 60.065 47.619 0.00 0.00 42.56 5.54
964 1047 1.742831 GTGATACAAGCAATGGCCGAA 59.257 47.619 0.00 0.00 42.56 4.30
965 1048 2.016318 TGATACAAGCAATGGCCGAAG 58.984 47.619 0.00 0.00 42.56 3.79
966 1049 0.740737 ATACAAGCAATGGCCGAAGC 59.259 50.000 0.00 0.79 42.56 3.86
979 1062 1.506493 CCGAAGCCATGTAGATGAGC 58.494 55.000 0.46 3.52 0.00 4.26
998 2465 1.301637 CCATGGACACAGCGACACA 60.302 57.895 5.56 0.00 0.00 3.72
999 2466 1.568612 CCATGGACACAGCGACACAC 61.569 60.000 5.56 0.00 0.00 3.82
1005 2472 0.179059 ACACAGCGACACACATGGAA 60.179 50.000 0.00 0.00 0.00 3.53
1034 2501 5.128205 TGGAGATCATGTTAGCATTTCAGG 58.872 41.667 0.00 0.00 31.99 3.86
1089 2556 0.249489 ATCCGCATCAACCGTCTAGC 60.249 55.000 0.00 0.00 0.00 3.42
1091 2558 1.141881 CGCATCAACCGTCTAGCCT 59.858 57.895 0.00 0.00 0.00 4.58
1107 2574 2.301577 GCCTCAAGCTCACGTCTAAT 57.698 50.000 0.00 0.00 38.99 1.73
1136 2603 4.478206 TGGACATGAAGAAGATGAGGAC 57.522 45.455 0.00 0.00 0.00 3.85
1178 2645 7.447374 CCAAGTGTAATTGGTGTCATAAGAA 57.553 36.000 3.07 0.00 44.01 2.52
1187 2654 5.217978 TGGTGTCATAAGAAACTTACCGT 57.782 39.130 0.00 0.00 32.29 4.83
1216 2683 9.620259 GATCAAGGAATGGTACTAAGAATCTTT 57.380 33.333 0.00 0.00 0.00 2.52
1275 2742 6.204108 TGAAGACGAAGGATGGTAAAACTTTC 59.796 38.462 0.00 0.00 0.00 2.62
1302 2769 1.956636 GCCTCATTGAAGGTGATGGCA 60.957 52.381 6.09 0.00 38.56 4.92
1331 2798 1.003580 TGGGAAAGTGAGCATGGAGAC 59.996 52.381 0.00 0.00 0.00 3.36
1361 2828 7.968956 CACTTTTAATCAAGAGTACGCTAGAGA 59.031 37.037 0.00 0.00 28.51 3.10
1365 2832 6.952773 AATCAAGAGTACGCTAGAGAAGAT 57.047 37.500 0.00 0.00 0.00 2.40
1371 2838 4.783055 AGTACGCTAGAGAAGATCTTGGA 58.217 43.478 14.00 0.00 39.64 3.53
1392 2859 2.798976 ACATGTTGGTGTTGCATGAC 57.201 45.000 10.22 0.00 41.62 3.06
1393 2860 1.001487 ACATGTTGGTGTTGCATGACG 60.001 47.619 10.22 0.00 41.62 4.35
1401 2868 3.006940 GGTGTTGCATGACGATCCTTTA 58.993 45.455 0.00 0.00 0.00 1.85
1449 2917 3.243501 GGAGATTTGTTGCTGCACTTCAA 60.244 43.478 0.00 5.93 0.00 2.69
1552 3060 5.964758 TCTTGTTTCTCTTGTGCAAACAAT 58.035 33.333 10.18 0.00 44.75 2.71
1558 3066 7.978414 TGTTTCTCTTGTGCAAACAATATTGAA 59.022 29.630 22.16 3.15 37.14 2.69
1613 3121 8.500753 TGACATTGTGGAAAGGTATAACATAC 57.499 34.615 0.00 0.00 0.00 2.39
1673 3181 3.936203 GGGTCGCAGTCACCACCA 61.936 66.667 0.00 0.00 35.35 4.17
1680 3188 2.498078 TCGCAGTCACCACCAATATGTA 59.502 45.455 0.00 0.00 0.00 2.29
1691 3199 5.721960 ACCACCAATATGTAGACTTCTGACT 59.278 40.000 0.00 0.00 0.00 3.41
1696 3204 6.286758 CAATATGTAGACTTCTGACTGCCAT 58.713 40.000 0.00 0.00 0.00 4.40
1745 3254 5.607477 CCCATTTCATTGATGATTCTTGGG 58.393 41.667 12.58 12.58 36.46 4.12
1780 3289 9.935241 AACATTCTCATGAGGTATATACATGTC 57.065 33.333 22.42 8.33 41.14 3.06
1781 3290 9.319060 ACATTCTCATGAGGTATATACATGTCT 57.681 33.333 22.42 0.00 41.14 3.41
1782 3291 9.583765 CATTCTCATGAGGTATATACATGTCTG 57.416 37.037 22.42 5.06 41.14 3.51
1793 3302 9.038803 GGTATATACATGTCTGCACATCATATG 57.961 37.037 14.70 0.00 41.69 1.78
1835 3361 7.936496 TCATCATACCATTAAGCTTTTGTCA 57.064 32.000 3.20 0.00 0.00 3.58
1836 3362 8.347004 TCATCATACCATTAAGCTTTTGTCAA 57.653 30.769 3.20 0.00 0.00 3.18
1837 3363 8.243426 TCATCATACCATTAAGCTTTTGTCAAC 58.757 33.333 3.20 0.00 0.00 3.18
1838 3364 7.759489 TCATACCATTAAGCTTTTGTCAACT 57.241 32.000 3.20 0.00 0.00 3.16
1839 3365 8.856153 TCATACCATTAAGCTTTTGTCAACTA 57.144 30.769 3.20 0.00 0.00 2.24
1840 3366 9.461312 TCATACCATTAAGCTTTTGTCAACTAT 57.539 29.630 3.20 0.00 0.00 2.12
1841 3367 9.722056 CATACCATTAAGCTTTTGTCAACTATC 57.278 33.333 3.20 0.00 0.00 2.08
1842 3368 9.686683 ATACCATTAAGCTTTTGTCAACTATCT 57.313 29.630 3.20 0.00 0.00 1.98
1851 3377 9.167311 AGCTTTTGTCAACTATCTAACTATTGG 57.833 33.333 0.00 0.00 0.00 3.16
1867 3393 7.710676 AACTATTGGGTTTGTGTGCATATTA 57.289 32.000 0.00 0.00 0.00 0.98
1914 3440 5.530171 CCACATAATGCAGAAGTGATAGCTT 59.470 40.000 11.49 0.00 32.14 3.74
1964 3490 6.550938 TGGAATCTTGATGAGAAGCTCTTA 57.449 37.500 0.00 0.00 38.06 2.10
1968 3494 8.200792 GGAATCTTGATGAGAAGCTCTTAACTA 58.799 37.037 0.00 0.00 38.06 2.24
1989 3515 5.645929 ACTATGACCGTTGATAATTGCAACA 59.354 36.000 19.46 0.00 44.37 3.33
2022 3548 1.894466 CAATTGTGGAGATTGTGGGCA 59.106 47.619 0.00 0.00 31.47 5.36
2041 3567 5.600484 TGGGCAAAGATTGGAAAAAGTAAGA 59.400 36.000 0.00 0.00 0.00 2.10
2044 3570 8.311109 GGGCAAAGATTGGAAAAAGTAAGATTA 58.689 33.333 0.00 0.00 0.00 1.75
2122 3648 3.126831 GTGAAGGATGGCTTAGATGTCG 58.873 50.000 0.00 0.00 0.00 4.35
2123 3649 3.031013 TGAAGGATGGCTTAGATGTCGA 58.969 45.455 0.00 0.00 0.00 4.20
2213 3739 2.629617 AGTTTGAGGAAATGGCCAAGTG 59.370 45.455 10.96 0.00 0.00 3.16
2321 3848 6.530120 TGCCTTATAGACTTGTCTTTGAACA 58.470 36.000 8.66 0.00 0.00 3.18
2327 3854 4.925068 AGACTTGTCTTTGAACATGCAAC 58.075 39.130 0.00 0.00 0.00 4.17
2354 3881 4.725790 AAGAAAAGCAATATGAGTGGCC 57.274 40.909 0.00 0.00 0.00 5.36
2355 3882 3.700538 AGAAAAGCAATATGAGTGGCCA 58.299 40.909 0.00 0.00 0.00 5.36
2368 3895 2.038557 GAGTGGCCACCTAGTTCAGAAA 59.961 50.000 32.29 0.00 0.00 2.52
2380 3907 5.243730 CCTAGTTCAGAAAAATGGGCTTTCA 59.756 40.000 0.64 0.00 35.62 2.69
2392 3919 4.901197 TGGGCTTTCACTGTAGATGTTA 57.099 40.909 0.00 0.00 0.00 2.41
2440 3967 8.593945 TGAAATAACCAAGCTATTTTCTGGAT 57.406 30.769 6.87 0.00 30.80 3.41
2450 3977 7.684937 AGCTATTTTCTGGATCTGATTATGC 57.315 36.000 0.00 0.00 0.00 3.14
2461 3988 3.133691 TCTGATTATGCGACTGCCAATC 58.866 45.455 0.00 5.31 41.78 2.67
2463 3990 4.039124 TCTGATTATGCGACTGCCAATCTA 59.961 41.667 10.85 1.24 39.98 1.98
2553 4080 9.415544 ACTATCAAAGAAATGACAAAAAGCATC 57.584 29.630 0.00 0.00 30.82 3.91
2555 4082 8.665643 ATCAAAGAAATGACAAAAAGCATCAA 57.334 26.923 0.00 0.00 30.82 2.57
2556 4083 8.133754 TCAAAGAAATGACAAAAAGCATCAAG 57.866 30.769 0.00 0.00 0.00 3.02
2562 4089 8.454570 AAATGACAAAAAGCATCAAGGAAAAT 57.545 26.923 0.00 0.00 0.00 1.82
2600 4127 2.420129 GCGACATCCAAGGTCTAATGGT 60.420 50.000 0.00 0.00 37.94 3.55
2627 4154 4.404073 AGCTACACTTCTTGATCCTCGATT 59.596 41.667 0.00 0.00 0.00 3.34
2663 4190 0.244450 GTAGCTTGCTTTGCCATGCA 59.756 50.000 0.00 0.00 38.08 3.96
2678 4205 1.304630 TGCACCATGGCATTGAGCT 60.305 52.632 18.77 0.00 44.79 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.142465 ACATGGGAGAGCTATGGCAAG 59.858 52.381 3.10 0.00 41.70 4.01
1 2 1.141657 GACATGGGAGAGCTATGGCAA 59.858 52.381 3.10 0.00 41.70 4.52
2 3 0.761187 GACATGGGAGAGCTATGGCA 59.239 55.000 3.10 0.00 41.70 4.92
3 4 0.761187 TGACATGGGAGAGCTATGGC 59.239 55.000 0.00 0.00 39.06 4.40
4 5 2.437281 AGTTGACATGGGAGAGCTATGG 59.563 50.000 0.00 0.00 0.00 2.74
5 6 3.118482 ACAGTTGACATGGGAGAGCTATG 60.118 47.826 0.00 0.00 0.00 2.23
6 7 3.110705 ACAGTTGACATGGGAGAGCTAT 58.889 45.455 0.00 0.00 0.00 2.97
7 8 2.497675 GACAGTTGACATGGGAGAGCTA 59.502 50.000 0.00 0.00 0.00 3.32
8 9 1.277557 GACAGTTGACATGGGAGAGCT 59.722 52.381 0.00 0.00 0.00 4.09
9 10 1.277557 AGACAGTTGACATGGGAGAGC 59.722 52.381 0.00 0.00 0.00 4.09
10 11 4.021104 TGTTAGACAGTTGACATGGGAGAG 60.021 45.833 0.00 0.00 0.00 3.20
11 12 3.901222 TGTTAGACAGTTGACATGGGAGA 59.099 43.478 0.00 0.00 0.00 3.71
12 13 4.271696 TGTTAGACAGTTGACATGGGAG 57.728 45.455 0.00 0.00 0.00 4.30
13 14 4.385825 GTTGTTAGACAGTTGACATGGGA 58.614 43.478 0.00 0.00 0.00 4.37
14 15 3.502211 GGTTGTTAGACAGTTGACATGGG 59.498 47.826 0.00 0.00 0.00 4.00
15 16 3.186409 CGGTTGTTAGACAGTTGACATGG 59.814 47.826 0.00 0.00 0.00 3.66
16 17 3.186409 CCGGTTGTTAGACAGTTGACATG 59.814 47.826 0.00 0.00 0.00 3.21
17 18 3.070446 TCCGGTTGTTAGACAGTTGACAT 59.930 43.478 0.00 0.00 0.00 3.06
18 19 2.431419 TCCGGTTGTTAGACAGTTGACA 59.569 45.455 0.00 0.00 0.00 3.58
19 20 3.057734 CTCCGGTTGTTAGACAGTTGAC 58.942 50.000 0.00 0.00 0.00 3.18
20 21 2.696707 ACTCCGGTTGTTAGACAGTTGA 59.303 45.455 0.00 0.00 0.00 3.18
21 22 3.107642 ACTCCGGTTGTTAGACAGTTG 57.892 47.619 0.00 0.00 0.00 3.16
22 23 3.006217 GGTACTCCGGTTGTTAGACAGTT 59.994 47.826 0.00 0.00 0.00 3.16
23 24 2.560105 GGTACTCCGGTTGTTAGACAGT 59.440 50.000 0.00 0.00 0.00 3.55
24 25 2.824341 AGGTACTCCGGTTGTTAGACAG 59.176 50.000 0.00 0.00 39.05 3.51
25 26 2.880443 AGGTACTCCGGTTGTTAGACA 58.120 47.619 0.00 0.00 39.05 3.41
40 41 3.798511 GGGGCAGCTGGGAGGTAC 61.799 72.222 17.12 0.00 0.00 3.34
41 42 3.658346 ATGGGGCAGCTGGGAGGTA 62.658 63.158 17.12 0.00 0.00 3.08
43 44 4.517934 CATGGGGCAGCTGGGAGG 62.518 72.222 17.12 0.00 0.00 4.30
52 53 4.486547 TGTCTAAACAAGGCATGGGGCA 62.487 50.000 0.00 0.00 43.24 5.36
53 54 0.817654 GTCTAAACAAGGCATGGGGC 59.182 55.000 0.00 0.00 43.74 5.80
54 55 2.214376 TGTCTAAACAAGGCATGGGG 57.786 50.000 0.00 0.00 33.94 4.96
63 64 6.293407 CGCTCTCCATTTTCTTGTCTAAACAA 60.293 38.462 0.00 0.00 43.06 2.83
64 65 5.179368 CGCTCTCCATTTTCTTGTCTAAACA 59.821 40.000 0.00 0.00 0.00 2.83
65 66 5.390991 CCGCTCTCCATTTTCTTGTCTAAAC 60.391 44.000 0.00 0.00 0.00 2.01
66 67 4.695455 CCGCTCTCCATTTTCTTGTCTAAA 59.305 41.667 0.00 0.00 0.00 1.85
67 68 4.253685 CCGCTCTCCATTTTCTTGTCTAA 58.746 43.478 0.00 0.00 0.00 2.10
68 69 3.260884 ACCGCTCTCCATTTTCTTGTCTA 59.739 43.478 0.00 0.00 0.00 2.59
69 70 2.039084 ACCGCTCTCCATTTTCTTGTCT 59.961 45.455 0.00 0.00 0.00 3.41
70 71 2.416893 GACCGCTCTCCATTTTCTTGTC 59.583 50.000 0.00 0.00 0.00 3.18
71 72 2.427506 GACCGCTCTCCATTTTCTTGT 58.572 47.619 0.00 0.00 0.00 3.16
72 73 1.740025 GGACCGCTCTCCATTTTCTTG 59.260 52.381 0.00 0.00 0.00 3.02
73 74 1.351017 TGGACCGCTCTCCATTTTCTT 59.649 47.619 0.00 0.00 35.23 2.52
74 75 0.984230 TGGACCGCTCTCCATTTTCT 59.016 50.000 0.00 0.00 35.23 2.52
75 76 1.066143 TCTGGACCGCTCTCCATTTTC 60.066 52.381 0.00 0.00 39.72 2.29
76 77 0.984230 TCTGGACCGCTCTCCATTTT 59.016 50.000 0.00 0.00 39.72 1.82
77 78 0.539051 CTCTGGACCGCTCTCCATTT 59.461 55.000 0.00 0.00 39.72 2.32
78 79 1.333636 CCTCTGGACCGCTCTCCATT 61.334 60.000 0.00 0.00 39.72 3.16
114 115 1.219664 CCCATCCACGCCGAAGTAA 59.780 57.895 0.00 0.00 0.00 2.24
157 158 3.424703 CAAGATTGTCCTCAACCACCAT 58.575 45.455 0.00 0.00 36.33 3.55
158 159 2.488891 CCAAGATTGTCCTCAACCACCA 60.489 50.000 0.00 0.00 36.33 4.17
159 160 2.162681 CCAAGATTGTCCTCAACCACC 58.837 52.381 0.00 0.00 36.33 4.61
164 165 4.705110 TCTTGTCCAAGATTGTCCTCAA 57.295 40.909 5.64 0.00 42.06 3.02
177 178 2.350895 CCGGTGCCATCTTGTCCA 59.649 61.111 0.00 0.00 0.00 4.02
196 203 1.484444 GGCACCTGAGAACCAGTCCT 61.484 60.000 0.00 0.00 41.33 3.85
200 207 1.374758 GTCGGCACCTGAGAACCAG 60.375 63.158 0.00 0.00 42.55 4.00
215 222 0.737367 ATGCATCAGTGTCGGTGTCG 60.737 55.000 0.00 0.00 37.82 4.35
225 232 2.101582 GGAGGTAGACGAATGCATCAGT 59.898 50.000 0.00 2.73 0.00 3.41
226 233 2.101415 TGGAGGTAGACGAATGCATCAG 59.899 50.000 0.00 0.00 0.00 2.90
227 234 2.107366 TGGAGGTAGACGAATGCATCA 58.893 47.619 0.00 0.00 0.00 3.07
228 235 2.890808 TGGAGGTAGACGAATGCATC 57.109 50.000 0.00 0.00 0.00 3.91
229 236 2.766263 TCTTGGAGGTAGACGAATGCAT 59.234 45.455 0.00 0.00 0.00 3.96
230 237 2.176045 TCTTGGAGGTAGACGAATGCA 58.824 47.619 0.00 0.00 0.00 3.96
233 240 4.822026 CAAGTTCTTGGAGGTAGACGAAT 58.178 43.478 4.80 0.00 0.00 3.34
253 260 1.214175 TGAAGGAGGTTGGAGTTGCAA 59.786 47.619 0.00 0.00 0.00 4.08
257 264 1.766496 TCGTTGAAGGAGGTTGGAGTT 59.234 47.619 0.00 0.00 0.00 3.01
258 265 1.344763 CTCGTTGAAGGAGGTTGGAGT 59.655 52.381 6.99 0.00 0.00 3.85
267 274 1.623311 TGATTCTGCCTCGTTGAAGGA 59.377 47.619 0.00 0.00 38.87 3.36
277 284 1.076485 GGCACCCATGATTCTGCCT 60.076 57.895 12.89 0.00 44.99 4.75
287 294 3.665675 GAGTTCGAGCGGCACCCAT 62.666 63.158 1.45 0.00 0.00 4.00
292 299 1.378119 TAGAGGAGTTCGAGCGGCA 60.378 57.895 1.45 0.00 0.00 5.69
300 307 1.264295 AACCGGGTGTAGAGGAGTTC 58.736 55.000 6.32 0.00 0.00 3.01
306 313 1.897802 ACCTTGTAACCGGGTGTAGAG 59.102 52.381 0.00 0.00 31.48 2.43
312 319 1.756665 GTCCACCTTGTAACCGGGT 59.243 57.895 6.32 0.00 0.00 5.28
407 414 1.142748 GCTGGTGGAGTCGATCTGG 59.857 63.158 0.00 0.00 0.00 3.86
417 424 1.075674 TGCCCTTTTTGCTGGTGGA 60.076 52.632 0.00 0.00 0.00 4.02
426 433 1.072173 GGATGCTTTGGTGCCCTTTTT 59.928 47.619 0.00 0.00 0.00 1.94
586 646 9.273016 TGAACTAGAACGAGAAAAATCTGATTT 57.727 29.630 9.76 9.76 0.00 2.17
598 658 6.416415 ACTTCTATCCTGAACTAGAACGAGA 58.584 40.000 0.00 0.00 32.15 4.04
599 659 6.687081 ACTTCTATCCTGAACTAGAACGAG 57.313 41.667 0.00 0.00 32.15 4.18
601 661 9.804758 ATAAAACTTCTATCCTGAACTAGAACG 57.195 33.333 0.00 0.00 32.15 3.95
636 702 0.968405 GCCTGTTCCAATTCAAGGCA 59.032 50.000 7.11 0.00 40.37 4.75
637 703 0.968405 TGCCTGTTCCAATTCAAGGC 59.032 50.000 5.05 5.05 40.97 4.35
638 704 3.749665 TTTGCCTGTTCCAATTCAAGG 57.250 42.857 0.00 0.00 0.00 3.61
639 705 5.049267 CCAAATTTGCCTGTTCCAATTCAAG 60.049 40.000 12.92 0.00 0.00 3.02
640 706 4.820716 CCAAATTTGCCTGTTCCAATTCAA 59.179 37.500 12.92 0.00 0.00 2.69
641 707 4.387598 CCAAATTTGCCTGTTCCAATTCA 58.612 39.130 12.92 0.00 0.00 2.57
653 719 4.183865 GCATTCTAACTCCCAAATTTGCC 58.816 43.478 12.92 0.00 0.00 4.52
921 992 5.126061 ACTGCACAAGAAAGTTGACAATTCT 59.874 36.000 0.00 0.00 35.00 2.40
929 1000 5.422666 TGTATCACTGCACAAGAAAGTTG 57.577 39.130 0.00 0.00 0.00 3.16
959 1042 1.506493 CTCATCTACATGGCTTCGGC 58.494 55.000 0.00 0.00 40.88 5.54
960 1043 1.506493 GCTCATCTACATGGCTTCGG 58.494 55.000 0.00 0.00 0.00 4.30
961 1044 1.506493 GGCTCATCTACATGGCTTCG 58.494 55.000 0.00 0.00 0.00 3.79
962 1045 1.141657 TGGGCTCATCTACATGGCTTC 59.858 52.381 0.00 0.00 0.00 3.86
963 1046 1.216064 TGGGCTCATCTACATGGCTT 58.784 50.000 0.00 0.00 0.00 4.35
964 1047 1.073444 CATGGGCTCATCTACATGGCT 59.927 52.381 0.00 0.00 37.61 4.75
965 1048 1.531423 CATGGGCTCATCTACATGGC 58.469 55.000 0.00 0.00 37.61 4.40
969 1052 1.486310 GTGTCCATGGGCTCATCTACA 59.514 52.381 19.09 6.21 0.00 2.74
979 1062 2.034879 GTGTCGCTGTGTCCATGGG 61.035 63.158 13.02 0.00 0.00 4.00
998 2465 5.132312 ACATGATCTCCATCTTCTTCCATGT 59.868 40.000 0.00 0.00 37.74 3.21
999 2466 5.622180 ACATGATCTCCATCTTCTTCCATG 58.378 41.667 0.00 0.00 36.08 3.66
1005 2472 5.883685 TGCTAACATGATCTCCATCTTCT 57.116 39.130 0.00 0.00 31.94 2.85
1034 2501 2.363680 TCATCCTCTTCTCCTTCATCGC 59.636 50.000 0.00 0.00 0.00 4.58
1089 2556 3.238108 ACATTAGACGTGAGCTTGAGG 57.762 47.619 0.00 0.00 0.00 3.86
1091 2558 3.745975 CCAAACATTAGACGTGAGCTTGA 59.254 43.478 0.00 0.00 0.00 3.02
1107 2574 4.531854 TCTTCTTCATGTCCAACCAAACA 58.468 39.130 0.00 0.00 0.00 2.83
1136 2603 2.459644 TGGCCTTCCATTCTCCATTTG 58.540 47.619 3.32 0.00 37.47 2.32
1178 2645 5.396436 CCATTCCTTGATCCTACGGTAAGTT 60.396 44.000 0.00 0.00 0.00 2.66
1187 2654 8.798975 ATTCTTAGTACCATTCCTTGATCCTA 57.201 34.615 0.00 0.00 0.00 2.94
1275 2742 3.760151 TCACCTTCAATGAGGCTTGATTG 59.240 43.478 1.45 1.45 40.65 2.67
1302 2769 3.265221 TGCTCACTTTCCCATCATTCTCT 59.735 43.478 0.00 0.00 0.00 3.10
1331 2798 6.812160 AGCGTACTCTTGATTAAAAGTGTAGG 59.188 38.462 12.86 12.86 40.95 3.18
1361 2828 4.895297 ACACCAACATGTTTCCAAGATCTT 59.105 37.500 8.77 0.88 0.00 2.40
1365 2832 3.430098 GCAACACCAACATGTTTCCAAGA 60.430 43.478 8.77 0.00 40.89 3.02
1371 2838 3.456280 GTCATGCAACACCAACATGTTT 58.544 40.909 8.77 0.00 40.89 2.83
1392 2859 4.283467 TGGTCCACCATAGATAAAGGATCG 59.717 45.833 0.00 0.00 42.01 3.69
1393 2860 5.825593 TGGTCCACCATAGATAAAGGATC 57.174 43.478 0.00 0.00 42.01 3.36
1449 2917 3.424703 AGTATGCAGCTTGAACAATGGT 58.575 40.909 0.00 0.00 0.00 3.55
1525 3033 4.014847 TGCACAAGAGAAACAAGAAACG 57.985 40.909 0.00 0.00 0.00 3.60
1613 3121 3.077359 ACTCGATGGCCTTCTTCTTTTG 58.923 45.455 16.03 0.00 0.00 2.44
1673 3181 5.939764 TGGCAGTCAGAAGTCTACATATT 57.060 39.130 0.00 0.00 0.00 1.28
1680 3188 4.081198 CCTTCTTATGGCAGTCAGAAGTCT 60.081 45.833 22.05 0.00 43.21 3.24
1719 3228 6.041182 CCAAGAATCATCAATGAAATGGGCTA 59.959 38.462 0.00 0.00 40.69 3.93
1745 3254 4.133078 CTCATGAGAATGTTCCTTAGCCC 58.867 47.826 18.34 0.00 0.00 5.19
1780 3289 7.307694 AGTACAACAAAACATATGATGTGCAG 58.692 34.615 10.38 2.04 44.07 4.41
1781 3290 7.213216 AGTACAACAAAACATATGATGTGCA 57.787 32.000 10.38 0.00 44.07 4.57
1782 3291 9.787532 ATAAGTACAACAAAACATATGATGTGC 57.212 29.630 10.38 7.81 44.07 4.57
1814 3337 7.759489 AGTTGACAAAAGCTTAATGGTATGA 57.241 32.000 14.58 0.00 0.00 2.15
1818 3341 9.515226 TTAGATAGTTGACAAAAGCTTAATGGT 57.485 29.630 14.58 4.88 0.00 3.55
1831 3357 8.380099 ACAAACCCAATAGTTAGATAGTTGACA 58.620 33.333 0.00 0.00 0.00 3.58
1835 3361 7.120726 GCACACAAACCCAATAGTTAGATAGTT 59.879 37.037 0.00 0.00 0.00 2.24
1836 3362 6.598064 GCACACAAACCCAATAGTTAGATAGT 59.402 38.462 0.00 0.00 0.00 2.12
1837 3363 6.597672 TGCACACAAACCCAATAGTTAGATAG 59.402 38.462 0.00 0.00 0.00 2.08
1838 3364 6.477253 TGCACACAAACCCAATAGTTAGATA 58.523 36.000 0.00 0.00 0.00 1.98
1839 3365 5.321102 TGCACACAAACCCAATAGTTAGAT 58.679 37.500 0.00 0.00 0.00 1.98
1840 3366 4.720046 TGCACACAAACCCAATAGTTAGA 58.280 39.130 0.00 0.00 0.00 2.10
1841 3367 5.643379 ATGCACACAAACCCAATAGTTAG 57.357 39.130 0.00 0.00 0.00 2.34
1842 3368 7.710676 AATATGCACACAAACCCAATAGTTA 57.289 32.000 0.00 0.00 0.00 2.24
1867 3393 6.379703 TGGTGCTGCAACATAAATAAACCTAT 59.620 34.615 17.83 0.00 0.00 2.57
1884 3410 1.097232 TCTGCATTATGTGGTGCTGC 58.903 50.000 0.00 0.00 41.78 5.25
1914 3440 4.922206 ACCAATGTTTCATGGAGCTTCTA 58.078 39.130 0.00 0.00 39.12 2.10
1929 3455 6.438108 TCATCAAGATTCCATTCAACCAATGT 59.562 34.615 0.00 0.00 40.51 2.71
1964 3490 6.150307 TGTTGCAATTATCAACGGTCATAGTT 59.850 34.615 0.59 0.00 44.88 2.24
1968 3494 5.125257 TGATGTTGCAATTATCAACGGTCAT 59.875 36.000 20.43 8.23 44.88 3.06
1989 3515 3.833650 TCCACAATTGCCTTGTCATTGAT 59.166 39.130 5.05 0.00 44.99 2.57
2008 3534 2.827322 CAATCTTTGCCCACAATCTCCA 59.173 45.455 0.00 0.00 35.21 3.86
2044 3570 8.514594 CATGTGATGTAAAGTACCTTCACAAAT 58.485 33.333 16.70 5.18 45.47 2.32
2264 3791 8.854614 ATCAAGCATTACAAAAGTAGAGTTCT 57.145 30.769 0.00 0.00 0.00 3.01
2292 3819 5.746990 AGACAAGTCTATAAGGCAACACT 57.253 39.130 0.00 0.00 38.35 3.55
2294 3821 6.530120 TCAAAGACAAGTCTATAAGGCAACA 58.470 36.000 2.72 0.00 39.39 3.33
2295 3822 7.041372 TGTTCAAAGACAAGTCTATAAGGCAAC 60.041 37.037 2.72 1.89 39.39 4.17
2321 3848 6.930667 ATTGCTTTTCTTTTTCTGTTGCAT 57.069 29.167 0.00 0.00 0.00 3.96
2327 3854 7.148689 GCCACTCATATTGCTTTTCTTTTTCTG 60.149 37.037 0.00 0.00 0.00 3.02
2354 3881 4.082125 AGCCCATTTTTCTGAACTAGGTG 58.918 43.478 0.00 0.00 0.00 4.00
2355 3882 4.388577 AGCCCATTTTTCTGAACTAGGT 57.611 40.909 0.00 0.00 0.00 3.08
2368 3895 4.666512 ACATCTACAGTGAAAGCCCATTT 58.333 39.130 0.00 0.00 0.00 2.32
2425 3952 7.094890 CGCATAATCAGATCCAGAAAATAGCTT 60.095 37.037 0.00 0.00 0.00 3.74
2440 3967 2.689553 TTGGCAGTCGCATAATCAGA 57.310 45.000 0.00 0.00 41.24 3.27
2450 3977 3.322254 AGGGAAGTATAGATTGGCAGTCG 59.678 47.826 4.23 0.00 0.00 4.18
2489 4016 2.827322 TCCCACTGCCTCATTTTCATTG 59.173 45.455 0.00 0.00 0.00 2.82
2524 4051 9.677567 GCTTTTTGTCATTTCTTTGATAGTGTA 57.322 29.630 0.00 0.00 0.00 2.90
2555 4082 8.190784 CGCTCCAATACTTATCAAAATTTTCCT 58.809 33.333 0.00 0.00 0.00 3.36
2556 4083 8.188139 TCGCTCCAATACTTATCAAAATTTTCC 58.812 33.333 0.00 0.00 0.00 3.13
2562 4089 6.260050 GGATGTCGCTCCAATACTTATCAAAA 59.740 38.462 0.00 0.00 35.24 2.44
2600 4127 6.771267 TCGAGGATCAAGAAGTGTAGCTATAA 59.229 38.462 0.00 0.00 33.17 0.98
2627 4154 6.735694 GCAAGCTACCAACATTTTCTTCTTGA 60.736 38.462 0.00 0.00 31.61 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.