AutoCloner

Multiple sequence alignment - TraesCS2B01G262300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G262300	chr2B	100.000	2120	0	0	1	2120	341621460	341619341	0.000000e+00	3916
1	TraesCS2B01G262300	chr2B	88.235	782	74	10	51	825	398589060	398588290	0.000000e+00	918
2	TraesCS2B01G262300	chr2B	86.289	795	91	12	51	839	297377365	297376583	0.000000e+00	848
3	TraesCS2B01G262300	chr5B	90.992	988	83	4	1139	2120	255727740	255726753	0.000000e+00	1327
4	TraesCS2B01G262300	chr5B	89.525	716	60	5	51	766	255737341	255736641	0.000000e+00	893
5	TraesCS2B01G262300	chr7B	89.426	993	86	7	1139	2120	502572000	502572984	0.000000e+00	1234
6	TraesCS2B01G262300	chr4D	89.347	995	88	9	1139	2117	126728124	126729116	0.000000e+00	1234
7	TraesCS2B01G262300	chr4D	88.933	759	67	10	1375	2117	131706927	131707684	0.000000e+00	920
8	TraesCS2B01G262300	chr5A	89.124	993	94	5	1139	2117	49177183	49178175	0.000000e+00	1223
9	TraesCS2B01G262300	chr5A	85.945	804	84	12	48	843	49176397	49177179	0.000000e+00	832
10	TraesCS2B01G262300	chr6D	88.855	996	95	7	1139	2118	392744064	392745059	0.000000e+00	1210
11	TraesCS2B01G262300	chr6D	88.431	994	96	13	1139	2117	170942266	170943255	0.000000e+00	1181
12	TraesCS2B01G262300	chr6D	86.226	726	80	11	119	843	392743354	392744060	0.000000e+00	769
13	TraesCS2B01G262300	chr6D	85.180	722	81	10	122	837	175417695	175418396	0.000000e+00	717
14	TraesCS2B01G262300	chr1B	88.396	991	99	8	1139	2117	250864344	250865330	0.000000e+00	1179
15	TraesCS2B01G262300	chr1B	88.194	1008	84	8	1139	2120	238267916	238266918	0.000000e+00	1170
16	TraesCS2B01G262300	chr1B	90.621	789	66	2	51	839	238268704	238267924	0.000000e+00	1040
17	TraesCS2B01G262300	chr1B	86.658	802	72	17	48	843	250863568	250864340	0.000000e+00	856
18	TraesCS2B01G262300	chr3A	88.330	994	99	8	1139	2117	214721994	214722985	0.000000e+00	1177
19	TraesCS2B01G262300	chr3A	85.750	800	86	15	49	843	214721214	214721990	0.000000e+00	821
20	TraesCS2B01G262300	chr1A	87.349	996	109	11	1139	2118	232451641	232452635	0.000000e+00	1125
21	TraesCS2B01G262300	chr1A	98.322	298	5	0	848	1145	554465861	554466158	6.700000e-145	523
22	TraesCS2B01G262300	chr1D	86.882	991	118	9	1139	2118	118948969	118947980	0.000000e+00	1099
23	TraesCS2B01G262300	chr1D	98.339	301	5	0	848	1148	394177540	394177240	1.440000e-146	529
24	TraesCS2B01G262300	chr1D	98.007	301	6	0	848	1148	394177024	394176724	6.700000e-145	523
25	TraesCS2B01G262300	chr1D	98.007	301	6	0	848	1148	394178077	394177777	6.700000e-145	523
26	TraesCS2B01G262300	chr1D	97.674	301	7	0	848	1148	254488869	254488569	3.120000e-143	518
27	TraesCS2B01G262300	chr3B	89.837	797	68	10	51	843	165265726	165264939	0.000000e+00	1011
28	TraesCS2B01G262300	chr6B	86.908	802	88	12	49	847	354657166	354656379	0.000000e+00	883
29	TraesCS2B01G262300	chr7D	84.341	728	89	14	119	843	468298166	468297461	0.000000e+00	689
30	TraesCS2B01G262300	chrUn	98.322	298	5	0	848	1145	405771390	405771687	6.700000e-145	523
31	TraesCS2B01G262300	chr2D	98.007	301	6	0	848	1148	628284845	628284545	6.700000e-145	523
32	TraesCS2B01G262300	chr2D	98.007	301	6	0	848	1148	628288092	628287792	6.700000e-145	523
33	TraesCS2B01G262300	chr2D	88.806	402	31	7	1728	2117	219178754	219179153	4.090000e-132	481
34	TraesCS2B01G262300	chr3D	97.674	301	7	0	848	1148	21896729	21896429	3.120000e-143	518
35	TraesCS2B01G262300	chr7A	87.195	164	19	2	685	847	422955850	422956012	3.590000e-43	185

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G262300	chr2B	341619341	341621460	2119	True	3916.0	3916	100.000000	1	2120	1	chr2B.!!$R2	2119
1	TraesCS2B01G262300	chr2B	398588290	398589060	770	True	918.0	918	88.235000	51	825	1	chr2B.!!$R3	774
2	TraesCS2B01G262300	chr2B	297376583	297377365	782	True	848.0	848	86.289000	51	839	1	chr2B.!!$R1	788
3	TraesCS2B01G262300	chr5B	255726753	255727740	987	True	1327.0	1327	90.992000	1139	2120	1	chr5B.!!$R1	981
4	TraesCS2B01G262300	chr5B	255736641	255737341	700	True	893.0	893	89.525000	51	766	1	chr5B.!!$R2	715
5	TraesCS2B01G262300	chr7B	502572000	502572984	984	False	1234.0	1234	89.426000	1139	2120	1	chr7B.!!$F1	981
6	TraesCS2B01G262300	chr4D	126728124	126729116	992	False	1234.0	1234	89.347000	1139	2117	1	chr4D.!!$F1	978
7	TraesCS2B01G262300	chr4D	131706927	131707684	757	False	920.0	920	88.933000	1375	2117	1	chr4D.!!$F2	742
8	TraesCS2B01G262300	chr5A	49176397	49178175	1778	False	1027.5	1223	87.534500	48	2117	2	chr5A.!!$F1	2069
9	TraesCS2B01G262300	chr6D	170942266	170943255	989	False	1181.0	1181	88.431000	1139	2117	1	chr6D.!!$F1	978
10	TraesCS2B01G262300	chr6D	392743354	392745059	1705	False	989.5	1210	87.540500	119	2118	2	chr6D.!!$F3	1999
11	TraesCS2B01G262300	chr6D	175417695	175418396	701	False	717.0	717	85.180000	122	837	1	chr6D.!!$F2	715
12	TraesCS2B01G262300	chr1B	238266918	238268704	1786	True	1105.0	1170	89.407500	51	2120	2	chr1B.!!$R1	2069
13	TraesCS2B01G262300	chr1B	250863568	250865330	1762	False	1017.5	1179	87.527000	48	2117	2	chr1B.!!$F1	2069
14	TraesCS2B01G262300	chr3A	214721214	214722985	1771	False	999.0	1177	87.040000	49	2117	2	chr3A.!!$F1	2068
15	TraesCS2B01G262300	chr1A	232451641	232452635	994	False	1125.0	1125	87.349000	1139	2118	1	chr1A.!!$F1	979
16	TraesCS2B01G262300	chr1D	118947980	118948969	989	True	1099.0	1099	86.882000	1139	2118	1	chr1D.!!$R1	979
17	TraesCS2B01G262300	chr1D	394176724	394178077	1353	True	525.0	529	98.117667	848	1148	3	chr1D.!!$R3	300
18	TraesCS2B01G262300	chr3B	165264939	165265726	787	True	1011.0	1011	89.837000	51	843	1	chr3B.!!$R1	792
19	TraesCS2B01G262300	chr6B	354656379	354657166	787	True	883.0	883	86.908000	49	847	1	chr6B.!!$R1	798
20	TraesCS2B01G262300	chr7D	468297461	468298166	705	True	689.0	689	84.341000	119	843	1	chr7D.!!$R1	724
21	TraesCS2B01G262300	chr2D	628284545	628288092	3547	True	523.0	523	98.007000	848	1148	2	chr2D.!!$R1	300

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
771	805	0.667993	CAGCCATTGAAACACGTGGT	59.332	50.0	21.57	11.47	34.23	4.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1640	2931	3.503827	TCACCTAGTATGTGCAACTCG	57.496	47.619	0.98	0.0	38.04	4.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	7.502120	AACTACATAAGCAAATAGAGCATGG	57.498	36.000	0.00	0.00	0.00	3.66
26	27	6.595682	ACTACATAAGCAAATAGAGCATGGT	58.404	36.000	0.00	0.00	0.00	3.55
27	28	6.708054	ACTACATAAGCAAATAGAGCATGGTC	59.292	38.462	17.19	17.19	0.00	4.02
28	29	5.688807	ACATAAGCAAATAGAGCATGGTCT	58.311	37.500	28.82	28.82	0.00	3.85
29	30	5.762218	ACATAAGCAAATAGAGCATGGTCTC	59.238	40.000	29.62	15.54	0.00	3.36
30	31	4.500499	AAGCAAATAGAGCATGGTCTCT	57.500	40.909	29.62	18.24	44.88	3.10
31	32	4.070630	AGCAAATAGAGCATGGTCTCTC	57.929	45.455	29.62	15.02	42.11	3.20
32	33	3.710677	AGCAAATAGAGCATGGTCTCTCT	59.289	43.478	29.62	16.84	42.11	3.10
33	34	4.057432	GCAAATAGAGCATGGTCTCTCTC	58.943	47.826	29.62	13.14	42.11	3.20
34	35	4.202243	GCAAATAGAGCATGGTCTCTCTCT	60.202	45.833	29.62	15.80	42.11	3.10
35	36	5.531634	CAAATAGAGCATGGTCTCTCTCTC	58.468	45.833	29.62	7.60	42.11	3.20
36	37	4.729552	ATAGAGCATGGTCTCTCTCTCT	57.270	45.455	29.62	14.42	42.11	3.10
37	38	2.936202	AGAGCATGGTCTCTCTCTCTC	58.064	52.381	21.55	1.70	39.05	3.20
38	39	2.511218	AGAGCATGGTCTCTCTCTCTCT	59.489	50.000	21.55	4.09	39.05	3.10
39	40	2.880890	GAGCATGGTCTCTCTCTCTCTC	59.119	54.545	17.59	0.00	0.00	3.20
40	41	2.511218	AGCATGGTCTCTCTCTCTCTCT	59.489	50.000	0.00	0.00	0.00	3.10
41	42	2.880890	GCATGGTCTCTCTCTCTCTCTC	59.119	54.545	0.00	0.00	0.00	3.20
42	43	3.434167	GCATGGTCTCTCTCTCTCTCTCT	60.434	52.174	0.00	0.00	0.00	3.10
43	44	4.202357	GCATGGTCTCTCTCTCTCTCTCTA	60.202	50.000	0.00	0.00	0.00	2.43
44	45	5.513788	GCATGGTCTCTCTCTCTCTCTCTAT	60.514	48.000	0.00	0.00	0.00	1.98
45	46	6.295859	GCATGGTCTCTCTCTCTCTCTCTATA	60.296	46.154	0.00	0.00	0.00	1.31
46	47	7.582242	GCATGGTCTCTCTCTCTCTCTCTATAT	60.582	44.444	0.00	0.00	0.00	0.86
138	148	9.282247	GCAATATACATTTCAGAAGTTCAACTG	57.718	33.333	5.50	0.00	35.72	3.16
139	149	9.778993	CAATATACATTTCAGAAGTTCAACTGG	57.221	33.333	5.50	0.00	35.20	4.00
151	161	4.426704	AGTTCAACTGGGTCTACATAGGT	58.573	43.478	0.00	0.00	0.00	3.08
189	199	5.488341	TGACCAGAAGTTAAGATGCTTACC	58.512	41.667	0.00	0.00	0.00	2.85
255	268	8.412456	CACCAAGGCATTAAAATCATGTATACA	58.588	33.333	8.27	8.27	0.00	2.29
282	299	7.355778	AGAAGTTCAGCTAATTTCTTCAAACG	58.644	34.615	5.50	0.00	40.22	3.60
297	314	9.932207	TTTCTTCAAACGTATATCCAGAAGTTA	57.068	29.630	0.00	0.00	34.28	2.24
337	355	7.812306	AGGCAGTAATACCATATAAACCAAGT	58.188	34.615	0.00	0.00	0.00	3.16
497	528	1.523258	AGCAGCAGCATCATCGTCC	60.523	57.895	3.17	0.00	45.49	4.79
583	617	5.814705	TCTTGCAACCCTTGTTAACATTTTG	59.185	36.000	9.56	10.94	32.09	2.44
631	665	4.207165	GCATTTCTTGCCCTTACCAGATA	58.793	43.478	0.00	0.00	46.15	1.98
662	696	1.185618	AGCAGACAAGGTGTAGGCGA	61.186	55.000	0.00	0.00	35.47	5.54
680	714	2.177531	CGCAGTGGCAAGCACATC	59.822	61.111	12.79	0.00	41.24	3.06
688	722	1.350684	TGGCAAGCACATCAGGACTAA	59.649	47.619	0.00	0.00	0.00	2.24
757	791	2.113774	CACTTGGTCCTGCAGCCA	59.886	61.111	8.66	8.76	0.00	4.75
771	805	0.667993	CAGCCATTGAAACACGTGGT	59.332	50.000	21.57	11.47	34.23	4.16
778	812	1.116308	TGAAACACGTGGTCTCCTCA	58.884	50.000	21.57	11.23	0.00	3.86
843	877	9.225436	GTCTTCTTGAATTTCTTCTTCATAGGT	57.775	33.333	0.00	0.00	32.94	3.08
846	880	6.942005	TCTTGAATTTCTTCTTCATAGGTGCA	59.058	34.615	0.00	0.00	32.94	4.57
907	941	4.163458	TCCTAGGCCAAACGAGTATTTCAT	59.837	41.667	5.01	0.00	0.00	2.57
914	948	5.335661	GCCAAACGAGTATTTCATGGAAAGT	60.336	40.000	0.00	0.00	34.92	2.66
929	1500	3.181449	TGGAAAGTCGACAAGGAATTCCA	60.181	43.478	26.22	20.70	39.73	3.53
1121	2208	4.678509	TGCAGTTCATCCAACGATAAAC	57.321	40.909	0.00	0.00	40.32	2.01
1194	2281	1.888018	CAACAGAGCCATGCCCAAG	59.112	57.895	0.00	0.00	0.00	3.61
1203	2290	0.896940	CCATGCCCAAGTGTGAGCTT	60.897	55.000	0.00	0.00	0.00	3.74
1226	2314	2.681848	GCAACATCACCAGATTCAGGAG	59.318	50.000	1.57	0.00	30.20	3.69
1230	2318	2.704464	TCACCAGATTCAGGAGCATG	57.296	50.000	1.57	0.00	0.00	4.06
1286	2489	6.949352	TGTCAAAATCTTCTTGCTTCTTCT	57.051	33.333	0.00	0.00	0.00	2.85
1327	2606	0.034670	GAAGCTGAAGGGGCACATCT	60.035	55.000	0.00	0.00	0.00	2.90
1348	2627	2.349590	TCATCTTGCATGACAGGTTCG	58.650	47.619	4.14	0.00	0.00	3.95
1379	2658	2.836636	AGACTGGGACTGCATCTCTA	57.163	50.000	0.00	0.00	0.00	2.43
1444	2723	3.943137	AACTGATGGAGCCCCCGGA	62.943	63.158	0.73	0.00	37.93	5.14
1467	2746	0.031178	GCCACAGCAGTGTTTTCTGG	59.969	55.000	8.55	0.00	44.39	3.86
1474	2754	1.102154	CAGTGTTTTCTGGCACACCA	58.898	50.000	1.98	0.00	43.78	4.17
1527	2807	4.467795	CAGAACTTCCTCCTCTGTGGATAA	59.532	45.833	0.00	0.00	45.16	1.75
1618	2903	7.986889	ACAAGAACAAGTTCAAAAATATGGCTT	59.013	29.630	14.69	0.00	41.84	4.35
1789	3080	7.440198	TCAGATCTTGGAGCATCAGTATTAAG	58.560	38.462	0.00	0.00	36.25	1.85
1807	3098	8.982723	AGTATTAAGTTCTGAAGCTCCATCTTA	58.017	33.333	0.00	0.00	0.00	2.10
1808	3099	9.771534	GTATTAAGTTCTGAAGCTCCATCTTAT	57.228	33.333	0.00	0.00	0.00	1.73
1914	3590	7.713942	CACAAACCTACACTAAAGGAAGTACTT	59.286	37.037	8.13	8.13	37.57	2.24
2027	3716	4.534797	ACACCAGAGGGAGTACTACATAC	58.465	47.826	7.57	0.00	36.11	2.39

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	7.557719	ACCATGCTCTATTTGCTTATGTAGTTT	59.442	33.333	0.00	0.00	0.00	2.66
2	3	6.595682	ACCATGCTCTATTTGCTTATGTAGT	58.404	36.000	0.00	0.00	0.00	2.73
3	4	6.933521	AGACCATGCTCTATTTGCTTATGTAG	59.066	38.462	0.00	0.00	0.00	2.74
6	7	5.996513	AGAGACCATGCTCTATTTGCTTATG	59.003	40.000	1.38	0.00	43.19	1.90
7	8	6.043012	AGAGAGACCATGCTCTATTTGCTTAT	59.957	38.462	3.16	0.00	44.92	1.73
8	9	5.365025	AGAGAGACCATGCTCTATTTGCTTA	59.635	40.000	3.16	0.00	44.92	3.09
9	10	4.163839	AGAGAGACCATGCTCTATTTGCTT	59.836	41.667	3.16	0.00	44.92	3.91
10	11	3.710677	AGAGAGACCATGCTCTATTTGCT	59.289	43.478	3.16	0.00	44.92	3.91
11	12	4.057432	GAGAGAGACCATGCTCTATTTGC	58.943	47.826	3.16	0.00	44.92	3.68
12	13	5.302568	AGAGAGAGAGACCATGCTCTATTTG	59.697	44.000	3.16	0.00	44.92	2.32
13	14	5.457686	AGAGAGAGAGACCATGCTCTATTT	58.542	41.667	3.16	0.00	44.92	1.40
14	15	5.065613	AGAGAGAGAGACCATGCTCTATT	57.934	43.478	3.16	0.00	44.92	1.73
15	16	4.352001	AGAGAGAGAGAGACCATGCTCTAT	59.648	45.833	3.16	0.55	44.92	1.98
16	17	3.716353	AGAGAGAGAGAGACCATGCTCTA	59.284	47.826	3.16	0.00	44.92	2.43
18	19	2.880890	GAGAGAGAGAGAGACCATGCTC	59.119	54.545	0.00	0.00	35.11	4.26
19	20	2.511218	AGAGAGAGAGAGAGACCATGCT	59.489	50.000	0.00	0.00	0.00	3.79
20	21	2.880890	GAGAGAGAGAGAGAGACCATGC	59.119	54.545	0.00	0.00	0.00	4.06
21	22	4.428294	AGAGAGAGAGAGAGAGACCATG	57.572	50.000	0.00	0.00	0.00	3.66
22	23	9.735362	ATATATAGAGAGAGAGAGAGAGACCAT	57.265	37.037	0.00	0.00	0.00	3.55
138	148	5.203528	TGGTTGTACTACCTATGTAGACCC	58.796	45.833	24.01	4.92	46.18	4.46
139	149	6.323225	ACATGGTTGTACTACCTATGTAGACC	59.677	42.308	26.53	8.87	46.03	3.85
151	161	6.439375	ACTTCTGGTCATACATGGTTGTACTA	59.561	38.462	0.00	0.00	41.02	1.82
210	220	3.074412	GTGTACATGGTTGAACCTCTGG	58.926	50.000	16.33	4.91	39.58	3.86
215	225	2.556622	CCTTGGTGTACATGGTTGAACC	59.443	50.000	7.57	7.57	39.07	3.62
255	268	9.521503	GTTTGAAGAAATTAGCTGAACTTCTTT	57.478	29.630	15.66	0.00	36.67	2.52
297	314	7.996098	ATTACTGCCTTTGTGTACATACTTT	57.004	32.000	0.00	0.00	0.00	2.66
300	317	6.819649	TGGTATTACTGCCTTTGTGTACATAC	59.180	38.462	0.00	0.00	0.00	2.39
497	528	0.820226	TCAACGCTGATGAGGAGGAG	59.180	55.000	0.00	0.00	0.00	3.69
631	665	1.526917	GTCTGCTTGGTGCTGGTGT	60.527	57.895	0.00	0.00	43.37	4.16
649	683	2.048597	TGCGTCGCCTACACCTTG	60.049	61.111	15.88	0.00	0.00	3.61
662	696	2.595463	ATGTGCTTGCCACTGCGT	60.595	55.556	0.00	0.00	44.92	5.24
680	714	2.094854	GGTACACCACGTCTTAGTCCTG	60.095	54.545	0.00	0.00	35.64	3.86
704	738	3.249805	TGGAAGGCCAAGTCTGCA	58.750	55.556	5.01	0.00	42.49	4.41
757	791	2.104111	TGAGGAGACCACGTGTTTCAAT	59.896	45.455	15.65	1.89	29.74	2.57
778	812	2.702748	AGTTGGTGAAGTTACTCCCCT	58.297	47.619	0.00	0.00	0.00	4.79
843	877	2.264005	AAACCCGTACTGACAATGCA	57.736	45.000	0.00	0.00	0.00	3.96
846	880	3.975168	AGCTAAACCCGTACTGACAAT	57.025	42.857	0.00	0.00	0.00	2.71
907	941	3.181449	TGGAATTCCTTGTCGACTTTCCA	60.181	43.478	24.73	19.07	36.82	3.53
914	948	6.259167	CGGTTATTAATGGAATTCCTTGTCGA	59.741	38.462	24.73	4.16	37.87	4.20
929	1500	7.619964	AGAATCAAAACGGTCGGTTATTAAT	57.380	32.000	0.00	0.00	38.08	1.40
1121	2208	6.461509	GGCATGGTTCTATAGTTGGAATTTGG	60.462	42.308	0.00	0.00	0.00	3.28
1162	2249	3.501445	GCTCTGTTGCTGAAGAAGATGTT	59.499	43.478	0.00	0.00	0.00	2.71
1194	2281	2.160417	GGTGATGTTGCTAAGCTCACAC	59.840	50.000	0.00	0.00	38.33	3.82
1203	2290	3.519107	TCCTGAATCTGGTGATGTTGCTA	59.481	43.478	6.07	0.00	32.44	3.49
1286	2489	4.462834	TCTTCTAGAGGATCAACGCAAGAA	59.537	41.667	0.00	0.00	38.40	2.52
1327	2606	2.743664	CGAACCTGTCATGCAAGATGAA	59.256	45.455	0.00	0.00	0.00	2.57
1348	2627	3.967987	AGTCCCAGTCTATTGATGGTACC	59.032	47.826	4.43	4.43	31.85	3.34
1379	2658	4.070716	CCTTTGTGCTCTCTTCAGATGTT	58.929	43.478	0.00	0.00	0.00	2.71
1451	2730	0.740737	GTGCCAGAAAACACTGCTGT	59.259	50.000	0.00	0.00	36.67	4.40
1467	2746	4.566004	TGTACTATCTGACTTTGGTGTGC	58.434	43.478	0.00	0.00	0.00	4.57
1474	2754	8.489489	ACCATCAATGATGTACTATCTGACTTT	58.511	33.333	20.39	0.00	38.28	2.66
1527	2807	5.581126	TGTTTTCTGTGTTCTTGCAGATT	57.419	34.783	0.00	0.00	40.83	2.40
1543	2823	8.454894	TGCTATTTCCCTTTTTGTTTTGTTTTC	58.545	29.630	0.00	0.00	0.00	2.29
1640	2931	3.503827	TCACCTAGTATGTGCAACTCG	57.496	47.619	0.98	0.00	38.04	4.18
1789	3080	5.877012	TGTGAATAAGATGGAGCTTCAGAAC	59.123	40.000	0.00	0.00	0.00	3.01
1914	3590	8.100164	TGTTGAACTTCTGGACATTGATGTATA	58.900	33.333	0.00	0.00	41.95	1.47
1925	3613	6.708949	TGTTAGGTATTGTTGAACTTCTGGAC	59.291	38.462	0.00	0.00	0.00	4.02
2027	3716	6.506147	TGTTGAACTTTTGGACATTCATCTG	58.494	36.000	0.00	0.00	31.45	2.90

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.