Multiple sequence alignment - TraesCS2B01G262000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G262000 chr2B 100.000 4169 0 0 1 4169 338773226 338769058 0.000000e+00 7699
1 TraesCS2B01G262000 chr2B 97.924 3709 57 3 462 4169 329480851 329484540 0.000000e+00 6405
2 TraesCS2B01G262000 chr4A 98.815 3712 33 6 462 4169 35615015 35611311 0.000000e+00 6601
3 TraesCS2B01G262000 chr4A 98.313 3735 38 4 460 4169 535873669 535869935 0.000000e+00 6525
4 TraesCS2B01G262000 chr7B 98.706 3709 36 4 462 4169 263144460 263140763 0.000000e+00 6573
5 TraesCS2B01G262000 chr7B 98.553 3733 26 5 462 4169 446152841 446156570 0.000000e+00 6569
6 TraesCS2B01G262000 chr4B 98.463 3709 35 7 462 4169 660455224 660451537 0.000000e+00 6514
7 TraesCS2B01G262000 chr4B 98.248 3711 32 7 462 4169 142053854 142050174 0.000000e+00 6462
8 TraesCS2B01G262000 chr4B 98.059 3710 42 5 462 4169 113965507 113969188 0.000000e+00 6425
9 TraesCS2B01G262000 chr5B 98.073 3737 32 4 461 4169 513600267 513603991 0.000000e+00 6466
10 TraesCS2B01G262000 chr6B 98.892 3520 32 3 654 4169 417231859 417235375 0.000000e+00 6277
11 TraesCS2B01G262000 chr4D 96.289 3719 102 13 461 4169 235487922 235491614 0.000000e+00 6071
12 TraesCS2B01G262000 chr7A 93.458 535 22 6 453 986 424544511 424543989 0.000000e+00 782
13 TraesCS2B01G262000 chr2D 93.846 455 19 6 1 446 249911227 249910773 0.000000e+00 676
14 TraesCS2B01G262000 chr2A 93.750 416 19 2 1 409 310384903 310385318 5.920000e-173 617


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G262000 chr2B 338769058 338773226 4168 True 7699 7699 100.000 1 4169 1 chr2B.!!$R1 4168
1 TraesCS2B01G262000 chr2B 329480851 329484540 3689 False 6405 6405 97.924 462 4169 1 chr2B.!!$F1 3707
2 TraesCS2B01G262000 chr4A 35611311 35615015 3704 True 6601 6601 98.815 462 4169 1 chr4A.!!$R1 3707
3 TraesCS2B01G262000 chr4A 535869935 535873669 3734 True 6525 6525 98.313 460 4169 1 chr4A.!!$R2 3709
4 TraesCS2B01G262000 chr7B 263140763 263144460 3697 True 6573 6573 98.706 462 4169 1 chr7B.!!$R1 3707
5 TraesCS2B01G262000 chr7B 446152841 446156570 3729 False 6569 6569 98.553 462 4169 1 chr7B.!!$F1 3707
6 TraesCS2B01G262000 chr4B 660451537 660455224 3687 True 6514 6514 98.463 462 4169 1 chr4B.!!$R2 3707
7 TraesCS2B01G262000 chr4B 142050174 142053854 3680 True 6462 6462 98.248 462 4169 1 chr4B.!!$R1 3707
8 TraesCS2B01G262000 chr4B 113965507 113969188 3681 False 6425 6425 98.059 462 4169 1 chr4B.!!$F1 3707
9 TraesCS2B01G262000 chr5B 513600267 513603991 3724 False 6466 6466 98.073 461 4169 1 chr5B.!!$F1 3708
10 TraesCS2B01G262000 chr6B 417231859 417235375 3516 False 6277 6277 98.892 654 4169 1 chr6B.!!$F1 3515
11 TraesCS2B01G262000 chr4D 235487922 235491614 3692 False 6071 6071 96.289 461 4169 1 chr4D.!!$F1 3708
12 TraesCS2B01G262000 chr7A 424543989 424544511 522 True 782 782 93.458 453 986 1 chr7A.!!$R1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.037303 CATCAAGACCAGCACCACCT 59.963 55.0 0.00 0.0 0.00 4.00 F
248 249 0.109086 CACATCGACTCTCAGCGGTT 60.109 55.0 0.00 0.0 0.00 4.44 F
250 251 0.171231 CATCGACTCTCAGCGGTTCA 59.829 55.0 0.00 0.0 0.00 3.18 F
1530 1616 0.178068 GGCGCCAATTGGACTCTCTA 59.822 55.0 29.02 0.0 37.39 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1530 1616 0.035317 TGCGACAAACATCAGCTCCT 59.965 50.00 0.0 0.0 0.00 3.69 R
2008 2095 0.617413 CCTGAGGATGGTGCAGAAGT 59.383 55.00 0.0 0.0 0.00 3.01 R
2143 2230 3.569701 ACGGAATTGACAGCACAAAGATT 59.430 39.13 0.0 0.0 33.44 2.40 R
3398 3491 0.603569 ACTCGGTTGTGGCAGTAGAG 59.396 55.00 0.0 0.0 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.658398 AAGGTGGCATCAAGACCAG 57.342 52.632 0.00 0.00 36.38 4.00
19 20 3.595819 GGTGGCATCAAGACCAGC 58.404 61.111 0.00 0.00 46.17 4.85
20 21 4.402851 GTGGCATCAAGACCAGCA 57.597 55.556 0.00 0.00 36.38 4.41
21 22 1.878775 GTGGCATCAAGACCAGCAC 59.121 57.895 0.00 0.00 36.38 4.40
22 23 1.303561 TGGCATCAAGACCAGCACC 60.304 57.895 0.00 0.00 0.00 5.01
23 24 1.303561 GGCATCAAGACCAGCACCA 60.304 57.895 0.00 0.00 0.00 4.17
24 25 1.589716 GGCATCAAGACCAGCACCAC 61.590 60.000 0.00 0.00 0.00 4.16
25 26 1.589716 GCATCAAGACCAGCACCACC 61.590 60.000 0.00 0.00 0.00 4.61
26 27 0.037303 CATCAAGACCAGCACCACCT 59.963 55.000 0.00 0.00 0.00 4.00
27 28 1.278985 CATCAAGACCAGCACCACCTA 59.721 52.381 0.00 0.00 0.00 3.08
28 29 0.685097 TCAAGACCAGCACCACCTAC 59.315 55.000 0.00 0.00 0.00 3.18
29 30 0.687354 CAAGACCAGCACCACCTACT 59.313 55.000 0.00 0.00 0.00 2.57
30 31 0.687354 AAGACCAGCACCACCTACTG 59.313 55.000 0.00 0.00 0.00 2.74
32 33 2.671070 CCAGCACCACCTACTGGG 59.329 66.667 0.19 0.00 45.97 4.45
38 39 3.401032 ACCACCTACTGGGGAGAAG 57.599 57.895 0.00 0.00 45.78 2.85
39 40 0.790993 ACCACCTACTGGGGAGAAGA 59.209 55.000 0.00 0.00 45.78 2.87
40 41 1.151413 ACCACCTACTGGGGAGAAGAA 59.849 52.381 0.00 0.00 45.78 2.52
41 42 2.225908 ACCACCTACTGGGGAGAAGAAT 60.226 50.000 0.00 0.00 45.78 2.40
42 43 3.013648 ACCACCTACTGGGGAGAAGAATA 59.986 47.826 0.00 0.00 45.78 1.75
43 44 3.388350 CCACCTACTGGGGAGAAGAATAC 59.612 52.174 0.00 0.00 39.76 1.89
44 45 4.030913 CACCTACTGGGGAGAAGAATACA 58.969 47.826 0.00 0.00 39.76 2.29
45 46 4.656112 CACCTACTGGGGAGAAGAATACAT 59.344 45.833 0.00 0.00 39.76 2.29
46 47 4.902448 ACCTACTGGGGAGAAGAATACATC 59.098 45.833 0.00 0.00 40.03 3.06
47 48 4.284746 CCTACTGGGGAGAAGAATACATCC 59.715 50.000 0.00 0.00 0.00 3.51
48 49 4.014273 ACTGGGGAGAAGAATACATCCT 57.986 45.455 0.00 0.00 32.18 3.24
49 50 3.713764 ACTGGGGAGAAGAATACATCCTG 59.286 47.826 0.00 0.00 32.18 3.86
50 51 2.439507 TGGGGAGAAGAATACATCCTGC 59.560 50.000 0.00 0.00 32.18 4.85
51 52 2.224646 GGGGAGAAGAATACATCCTGCC 60.225 54.545 0.00 0.00 32.18 4.85
52 53 2.224646 GGGAGAAGAATACATCCTGCCC 60.225 54.545 0.00 0.00 32.18 5.36
53 54 2.224646 GGAGAAGAATACATCCTGCCCC 60.225 54.545 0.00 0.00 0.00 5.80
54 55 1.777272 AGAAGAATACATCCTGCCCCC 59.223 52.381 0.00 0.00 0.00 5.40
55 56 0.474184 AAGAATACATCCTGCCCCCG 59.526 55.000 0.00 0.00 0.00 5.73
56 57 0.399949 AGAATACATCCTGCCCCCGA 60.400 55.000 0.00 0.00 0.00 5.14
57 58 0.472471 GAATACATCCTGCCCCCGAA 59.528 55.000 0.00 0.00 0.00 4.30
58 59 0.923358 AATACATCCTGCCCCCGAAA 59.077 50.000 0.00 0.00 0.00 3.46
59 60 0.182775 ATACATCCTGCCCCCGAAAC 59.817 55.000 0.00 0.00 0.00 2.78
60 61 1.202099 TACATCCTGCCCCCGAAACA 61.202 55.000 0.00 0.00 0.00 2.83
61 62 1.076777 CATCCTGCCCCCGAAACAT 60.077 57.895 0.00 0.00 0.00 2.71
62 63 0.182537 CATCCTGCCCCCGAAACATA 59.817 55.000 0.00 0.00 0.00 2.29
63 64 0.474184 ATCCTGCCCCCGAAACATAG 59.526 55.000 0.00 0.00 0.00 2.23
64 65 1.152963 CCTGCCCCCGAAACATAGG 60.153 63.158 0.00 0.00 0.00 2.57
65 66 1.632018 CCTGCCCCCGAAACATAGGA 61.632 60.000 0.00 0.00 0.00 2.94
66 67 0.474184 CTGCCCCCGAAACATAGGAT 59.526 55.000 0.00 0.00 0.00 3.24
67 68 1.697432 CTGCCCCCGAAACATAGGATA 59.303 52.381 0.00 0.00 0.00 2.59
68 69 1.418637 TGCCCCCGAAACATAGGATAC 59.581 52.381 0.00 0.00 0.00 2.24
69 70 1.271217 GCCCCCGAAACATAGGATACC 60.271 57.143 0.00 0.00 37.17 2.73
70 71 2.335933 CCCCCGAAACATAGGATACCT 58.664 52.381 0.00 0.00 37.71 3.08
71 72 3.513517 CCCCCGAAACATAGGATACCTA 58.486 50.000 0.00 0.00 40.71 3.08
72 73 4.101856 CCCCCGAAACATAGGATACCTAT 58.898 47.826 4.68 4.68 46.66 2.57
73 74 4.534897 CCCCCGAAACATAGGATACCTATT 59.465 45.833 7.49 0.00 43.60 1.73
74 75 5.013808 CCCCCGAAACATAGGATACCTATTT 59.986 44.000 7.49 2.62 43.60 1.40
75 76 6.214005 CCCCCGAAACATAGGATACCTATTTA 59.786 42.308 7.49 0.00 43.60 1.40
76 77 7.256763 CCCCCGAAACATAGGATACCTATTTAA 60.257 40.741 7.49 0.00 43.60 1.52
77 78 8.326529 CCCCGAAACATAGGATACCTATTTAAT 58.673 37.037 7.49 0.00 43.60 1.40
78 79 9.734984 CCCGAAACATAGGATACCTATTTAATT 57.265 33.333 7.49 2.12 43.60 1.40
84 85 8.621073 ACATAGGATACCTATTTAATTTCCCCC 58.379 37.037 7.49 0.00 43.60 5.40
85 86 8.846804 CATAGGATACCTATTTAATTTCCCCCT 58.153 37.037 7.49 0.00 43.60 4.79
86 87 7.344599 AGGATACCTATTTAATTTCCCCCTC 57.655 40.000 0.00 0.00 28.47 4.30
87 88 6.277283 AGGATACCTATTTAATTTCCCCCTCC 59.723 42.308 0.00 0.00 28.47 4.30
88 89 6.277283 GGATACCTATTTAATTTCCCCCTCCT 59.723 42.308 0.00 0.00 0.00 3.69
89 90 7.463295 GGATACCTATTTAATTTCCCCCTCCTA 59.537 40.741 0.00 0.00 0.00 2.94
90 91 8.839543 ATACCTATTTAATTTCCCCCTCCTAA 57.160 34.615 0.00 0.00 0.00 2.69
91 92 7.548658 ACCTATTTAATTTCCCCCTCCTAAA 57.451 36.000 0.00 0.00 0.00 1.85
92 93 8.138306 ACCTATTTAATTTCCCCCTCCTAAAT 57.862 34.615 0.00 0.00 0.00 1.40
93 94 9.257195 ACCTATTTAATTTCCCCCTCCTAAATA 57.743 33.333 0.00 0.00 0.00 1.40
94 95 9.529823 CCTATTTAATTTCCCCCTCCTAAATAC 57.470 37.037 0.00 0.00 0.00 1.89
96 97 8.777578 ATTTAATTTCCCCCTCCTAAATACAC 57.222 34.615 0.00 0.00 0.00 2.90
97 98 5.806955 AATTTCCCCCTCCTAAATACACA 57.193 39.130 0.00 0.00 0.00 3.72
98 99 4.855298 TTTCCCCCTCCTAAATACACAG 57.145 45.455 0.00 0.00 0.00 3.66
99 100 3.788116 TCCCCCTCCTAAATACACAGA 57.212 47.619 0.00 0.00 0.00 3.41
100 101 4.295905 TCCCCCTCCTAAATACACAGAT 57.704 45.455 0.00 0.00 0.00 2.90
101 102 4.641868 TCCCCCTCCTAAATACACAGATT 58.358 43.478 0.00 0.00 0.00 2.40
102 103 5.043762 TCCCCCTCCTAAATACACAGATTT 58.956 41.667 0.00 0.00 33.60 2.17
103 104 6.214278 TCCCCCTCCTAAATACACAGATTTA 58.786 40.000 0.00 0.00 31.51 1.40
104 105 6.100714 TCCCCCTCCTAAATACACAGATTTAC 59.899 42.308 0.00 0.00 31.51 2.01
105 106 6.126594 CCCCCTCCTAAATACACAGATTTACA 60.127 42.308 0.00 0.00 31.51 2.41
106 107 7.343357 CCCCTCCTAAATACACAGATTTACAA 58.657 38.462 0.00 0.00 31.51 2.41
107 108 7.998964 CCCCTCCTAAATACACAGATTTACAAT 59.001 37.037 0.00 0.00 31.51 2.71
108 109 9.408648 CCCTCCTAAATACACAGATTTACAATT 57.591 33.333 0.00 0.00 31.51 2.32
135 136 9.787435 ATACAGAGTTTACAAATGGTAAGTTGA 57.213 29.630 0.00 0.00 42.63 3.18
136 137 8.154649 ACAGAGTTTACAAATGGTAAGTTGAG 57.845 34.615 0.00 0.00 42.63 3.02
137 138 7.990886 ACAGAGTTTACAAATGGTAAGTTGAGA 59.009 33.333 0.00 0.00 42.63 3.27
138 139 8.836413 CAGAGTTTACAAATGGTAAGTTGAGAA 58.164 33.333 0.00 0.00 42.63 2.87
139 140 9.403583 AGAGTTTACAAATGGTAAGTTGAGAAA 57.596 29.630 0.00 0.00 42.63 2.52
145 146 8.647143 ACAAATGGTAAGTTGAGAAAAATGTG 57.353 30.769 0.00 0.00 34.98 3.21
146 147 7.710475 ACAAATGGTAAGTTGAGAAAAATGTGG 59.290 33.333 0.00 0.00 34.98 4.17
147 148 6.976934 ATGGTAAGTTGAGAAAAATGTGGT 57.023 33.333 0.00 0.00 0.00 4.16
148 149 6.142818 TGGTAAGTTGAGAAAAATGTGGTG 57.857 37.500 0.00 0.00 0.00 4.17
149 150 5.888724 TGGTAAGTTGAGAAAAATGTGGTGA 59.111 36.000 0.00 0.00 0.00 4.02
150 151 6.378564 TGGTAAGTTGAGAAAAATGTGGTGAA 59.621 34.615 0.00 0.00 0.00 3.18
151 152 6.918022 GGTAAGTTGAGAAAAATGTGGTGAAG 59.082 38.462 0.00 0.00 0.00 3.02
152 153 6.773976 AAGTTGAGAAAAATGTGGTGAAGA 57.226 33.333 0.00 0.00 0.00 2.87
153 154 6.136541 AGTTGAGAAAAATGTGGTGAAGAC 57.863 37.500 0.00 0.00 0.00 3.01
154 155 5.888161 AGTTGAGAAAAATGTGGTGAAGACT 59.112 36.000 0.00 0.00 0.00 3.24
155 156 5.756195 TGAGAAAAATGTGGTGAAGACTG 57.244 39.130 0.00 0.00 0.00 3.51
156 157 5.192927 TGAGAAAAATGTGGTGAAGACTGT 58.807 37.500 0.00 0.00 0.00 3.55
157 158 5.296780 TGAGAAAAATGTGGTGAAGACTGTC 59.703 40.000 0.00 0.00 0.00 3.51
158 159 5.192927 AGAAAAATGTGGTGAAGACTGTCA 58.807 37.500 10.88 0.00 0.00 3.58
159 160 5.829924 AGAAAAATGTGGTGAAGACTGTCAT 59.170 36.000 10.88 0.00 0.00 3.06
160 161 6.998074 AGAAAAATGTGGTGAAGACTGTCATA 59.002 34.615 10.88 0.00 0.00 2.15
161 162 7.667219 AGAAAAATGTGGTGAAGACTGTCATAT 59.333 33.333 10.88 0.00 0.00 1.78
162 163 6.992063 AAATGTGGTGAAGACTGTCATATC 57.008 37.500 10.88 6.01 0.00 1.63
163 164 5.946942 ATGTGGTGAAGACTGTCATATCT 57.053 39.130 10.88 0.00 0.00 1.98
164 165 5.077134 TGTGGTGAAGACTGTCATATCTG 57.923 43.478 10.88 0.00 0.00 2.90
165 166 3.868077 GTGGTGAAGACTGTCATATCTGC 59.132 47.826 10.88 3.59 0.00 4.26
166 167 3.118629 TGGTGAAGACTGTCATATCTGCC 60.119 47.826 10.88 11.24 0.00 4.85
167 168 3.462021 GTGAAGACTGTCATATCTGCCC 58.538 50.000 10.88 0.00 0.00 5.36
168 169 3.106827 TGAAGACTGTCATATCTGCCCA 58.893 45.455 10.88 0.00 0.00 5.36
169 170 3.519107 TGAAGACTGTCATATCTGCCCAA 59.481 43.478 10.88 0.00 0.00 4.12
170 171 3.550437 AGACTGTCATATCTGCCCAAC 57.450 47.619 10.88 0.00 0.00 3.77
171 172 3.110705 AGACTGTCATATCTGCCCAACT 58.889 45.455 10.88 0.00 0.00 3.16
172 173 3.521126 AGACTGTCATATCTGCCCAACTT 59.479 43.478 10.88 0.00 0.00 2.66
173 174 3.614092 ACTGTCATATCTGCCCAACTTG 58.386 45.455 0.00 0.00 0.00 3.16
174 175 2.947652 CTGTCATATCTGCCCAACTTGG 59.052 50.000 0.12 0.12 37.25 3.61
175 176 2.575735 TGTCATATCTGCCCAACTTGGA 59.424 45.455 9.61 0.00 40.96 3.53
176 177 3.010027 TGTCATATCTGCCCAACTTGGAA 59.990 43.478 9.61 0.00 40.96 3.53
177 178 4.016444 GTCATATCTGCCCAACTTGGAAA 58.984 43.478 9.61 0.00 40.96 3.13
191 192 3.864789 TTGGAAAGAGGCTCTTCAGTT 57.135 42.857 28.69 14.29 35.27 3.16
192 193 3.409026 TGGAAAGAGGCTCTTCAGTTC 57.591 47.619 28.69 21.24 35.27 3.01
193 194 2.975489 TGGAAAGAGGCTCTTCAGTTCT 59.025 45.455 28.69 13.15 35.27 3.01
194 195 3.392616 TGGAAAGAGGCTCTTCAGTTCTT 59.607 43.478 28.69 12.40 35.27 2.52
195 196 4.141390 TGGAAAGAGGCTCTTCAGTTCTTT 60.141 41.667 28.69 11.65 35.27 2.52
196 197 4.215185 GGAAAGAGGCTCTTCAGTTCTTTG 59.785 45.833 28.69 0.00 35.27 2.77
197 198 3.415457 AGAGGCTCTTCAGTTCTTTGG 57.585 47.619 12.24 0.00 0.00 3.28
198 199 1.809547 GAGGCTCTTCAGTTCTTTGGC 59.190 52.381 7.40 0.00 0.00 4.52
199 200 1.143684 AGGCTCTTCAGTTCTTTGGCA 59.856 47.619 0.00 0.00 0.00 4.92
200 201 1.268079 GGCTCTTCAGTTCTTTGGCAC 59.732 52.381 0.00 0.00 0.00 5.01
201 202 2.225467 GCTCTTCAGTTCTTTGGCACT 58.775 47.619 0.00 0.00 0.00 4.40
202 203 3.403038 GCTCTTCAGTTCTTTGGCACTA 58.597 45.455 0.00 0.00 0.00 2.74
203 204 4.006319 GCTCTTCAGTTCTTTGGCACTAT 58.994 43.478 0.00 0.00 0.00 2.12
204 205 4.094146 GCTCTTCAGTTCTTTGGCACTATC 59.906 45.833 0.00 0.00 0.00 2.08
205 206 5.227569 TCTTCAGTTCTTTGGCACTATCA 57.772 39.130 0.00 0.00 0.00 2.15
206 207 5.620206 TCTTCAGTTCTTTGGCACTATCAA 58.380 37.500 0.00 0.00 0.00 2.57
207 208 5.470098 TCTTCAGTTCTTTGGCACTATCAAC 59.530 40.000 0.00 0.00 0.00 3.18
208 209 4.713553 TCAGTTCTTTGGCACTATCAACA 58.286 39.130 0.00 0.00 0.00 3.33
209 210 5.129634 TCAGTTCTTTGGCACTATCAACAA 58.870 37.500 0.00 0.00 0.00 2.83
210 211 5.239306 TCAGTTCTTTGGCACTATCAACAAG 59.761 40.000 0.00 0.00 0.00 3.16
211 212 5.239306 CAGTTCTTTGGCACTATCAACAAGA 59.761 40.000 0.00 0.00 0.00 3.02
212 213 5.827797 AGTTCTTTGGCACTATCAACAAGAA 59.172 36.000 3.33 3.33 0.00 2.52
213 214 6.321181 AGTTCTTTGGCACTATCAACAAGAAA 59.679 34.615 7.96 0.00 28.79 2.52
214 215 6.072112 TCTTTGGCACTATCAACAAGAAAC 57.928 37.500 0.00 0.00 0.00 2.78
215 216 5.827797 TCTTTGGCACTATCAACAAGAAACT 59.172 36.000 0.00 0.00 0.00 2.66
216 217 5.437289 TTGGCACTATCAACAAGAAACTG 57.563 39.130 0.00 0.00 0.00 3.16
217 218 3.820467 TGGCACTATCAACAAGAAACTGG 59.180 43.478 0.00 0.00 0.00 4.00
218 219 3.821033 GGCACTATCAACAAGAAACTGGT 59.179 43.478 0.00 0.00 0.00 4.00
219 220 4.083271 GGCACTATCAACAAGAAACTGGTC 60.083 45.833 0.00 0.00 0.00 4.02
220 221 4.377431 GCACTATCAACAAGAAACTGGTCG 60.377 45.833 0.00 0.00 0.00 4.79
221 222 4.988540 CACTATCAACAAGAAACTGGTCGA 59.011 41.667 0.00 0.00 0.00 4.20
222 223 5.119279 CACTATCAACAAGAAACTGGTCGAG 59.881 44.000 0.00 0.00 0.00 4.04
223 224 3.536956 TCAACAAGAAACTGGTCGAGT 57.463 42.857 0.00 0.00 35.94 4.18
224 225 4.659111 TCAACAAGAAACTGGTCGAGTA 57.341 40.909 0.00 0.00 33.09 2.59
225 226 4.365723 TCAACAAGAAACTGGTCGAGTAC 58.634 43.478 0.00 0.00 33.09 2.73
226 227 4.116961 CAACAAGAAACTGGTCGAGTACA 58.883 43.478 0.00 0.00 33.09 2.90
227 228 3.978687 ACAAGAAACTGGTCGAGTACAG 58.021 45.455 9.44 9.44 40.48 2.74
228 229 2.726832 AGAAACTGGTCGAGTACAGC 57.273 50.000 10.61 0.00 38.25 4.40
229 230 1.272769 AGAAACTGGTCGAGTACAGCC 59.727 52.381 10.61 0.00 38.25 4.85
230 231 1.000506 GAAACTGGTCGAGTACAGCCA 59.999 52.381 10.61 1.36 38.25 4.75
231 232 0.317479 AACTGGTCGAGTACAGCCAC 59.683 55.000 10.61 0.00 38.25 5.01
232 233 0.826256 ACTGGTCGAGTACAGCCACA 60.826 55.000 10.61 0.00 38.25 4.17
233 234 0.532573 CTGGTCGAGTACAGCCACAT 59.467 55.000 0.00 0.00 0.00 3.21
234 235 0.530744 TGGTCGAGTACAGCCACATC 59.469 55.000 0.00 0.00 0.00 3.06
235 236 0.525668 GGTCGAGTACAGCCACATCG 60.526 60.000 0.00 0.00 34.80 3.84
236 237 0.450583 GTCGAGTACAGCCACATCGA 59.549 55.000 0.00 0.00 39.85 3.59
237 238 0.450583 TCGAGTACAGCCACATCGAC 59.549 55.000 0.00 0.00 37.48 4.20
238 239 0.452184 CGAGTACAGCCACATCGACT 59.548 55.000 0.00 0.00 35.47 4.18
239 240 1.532090 CGAGTACAGCCACATCGACTC 60.532 57.143 0.00 0.00 35.47 3.36
240 241 1.746220 GAGTACAGCCACATCGACTCT 59.254 52.381 0.00 0.00 32.41 3.24
241 242 1.746220 AGTACAGCCACATCGACTCTC 59.254 52.381 0.00 0.00 0.00 3.20
242 243 1.472878 GTACAGCCACATCGACTCTCA 59.527 52.381 0.00 0.00 0.00 3.27
243 244 0.529833 ACAGCCACATCGACTCTCAG 59.470 55.000 0.00 0.00 0.00 3.35
244 245 0.805322 CAGCCACATCGACTCTCAGC 60.805 60.000 0.00 0.00 0.00 4.26
245 246 1.875813 GCCACATCGACTCTCAGCG 60.876 63.158 0.00 0.00 0.00 5.18
246 247 1.226802 CCACATCGACTCTCAGCGG 60.227 63.158 0.00 0.00 0.00 5.52
247 248 1.508545 CACATCGACTCTCAGCGGT 59.491 57.895 0.00 0.00 0.00 5.68
248 249 0.109086 CACATCGACTCTCAGCGGTT 60.109 55.000 0.00 0.00 0.00 4.44
249 250 0.171455 ACATCGACTCTCAGCGGTTC 59.829 55.000 0.00 0.00 0.00 3.62
250 251 0.171231 CATCGACTCTCAGCGGTTCA 59.829 55.000 0.00 0.00 0.00 3.18
251 252 0.453793 ATCGACTCTCAGCGGTTCAG 59.546 55.000 0.00 0.00 0.00 3.02
252 253 0.605589 TCGACTCTCAGCGGTTCAGA 60.606 55.000 0.00 0.00 0.00 3.27
253 254 0.241213 CGACTCTCAGCGGTTCAGAA 59.759 55.000 0.00 0.00 0.00 3.02
254 255 1.730772 CGACTCTCAGCGGTTCAGAAG 60.731 57.143 0.00 0.00 0.00 2.85
255 256 1.542030 GACTCTCAGCGGTTCAGAAGA 59.458 52.381 0.00 0.00 0.00 2.87
256 257 1.543802 ACTCTCAGCGGTTCAGAAGAG 59.456 52.381 0.00 0.00 0.00 2.85
257 258 1.543802 CTCTCAGCGGTTCAGAAGAGT 59.456 52.381 0.00 0.00 0.00 3.24
258 259 1.964223 TCTCAGCGGTTCAGAAGAGTT 59.036 47.619 0.00 0.00 0.00 3.01
259 260 2.365617 TCTCAGCGGTTCAGAAGAGTTT 59.634 45.455 0.00 0.00 0.00 2.66
260 261 2.478134 CTCAGCGGTTCAGAAGAGTTTG 59.522 50.000 0.00 0.00 0.00 2.93
261 262 1.069636 CAGCGGTTCAGAAGAGTTTGC 60.070 52.381 0.00 0.00 0.00 3.68
262 263 0.238553 GCGGTTCAGAAGAGTTTGCC 59.761 55.000 0.00 0.00 0.00 4.52
263 264 1.884235 CGGTTCAGAAGAGTTTGCCT 58.116 50.000 0.00 0.00 0.00 4.75
264 265 1.532868 CGGTTCAGAAGAGTTTGCCTG 59.467 52.381 0.00 0.00 0.00 4.85
265 266 1.268079 GGTTCAGAAGAGTTTGCCTGC 59.732 52.381 0.00 0.00 0.00 4.85
266 267 1.949525 GTTCAGAAGAGTTTGCCTGCA 59.050 47.619 0.00 0.00 0.00 4.41
267 268 2.346766 TCAGAAGAGTTTGCCTGCAA 57.653 45.000 0.00 0.00 0.00 4.08
268 269 2.867624 TCAGAAGAGTTTGCCTGCAAT 58.132 42.857 5.25 0.00 35.70 3.56
269 270 3.225104 TCAGAAGAGTTTGCCTGCAATT 58.775 40.909 5.25 0.00 35.70 2.32
270 271 4.397420 TCAGAAGAGTTTGCCTGCAATTA 58.603 39.130 5.25 0.00 35.70 1.40
271 272 5.012239 TCAGAAGAGTTTGCCTGCAATTAT 58.988 37.500 5.25 0.00 35.70 1.28
272 273 5.477984 TCAGAAGAGTTTGCCTGCAATTATT 59.522 36.000 5.25 1.44 35.70 1.40
273 274 6.015180 TCAGAAGAGTTTGCCTGCAATTATTT 60.015 34.615 5.25 0.00 35.70 1.40
274 275 6.309737 CAGAAGAGTTTGCCTGCAATTATTTC 59.690 38.462 5.25 8.09 35.70 2.17
275 276 5.726980 AGAGTTTGCCTGCAATTATTTCA 57.273 34.783 5.25 0.00 35.70 2.69
276 277 5.717119 AGAGTTTGCCTGCAATTATTTCAG 58.283 37.500 5.25 0.00 35.70 3.02
284 285 4.110482 CTGCAATTATTTCAGGAAGCTGC 58.890 43.478 0.00 0.00 0.00 5.25
285 286 3.765511 TGCAATTATTTCAGGAAGCTGCT 59.234 39.130 0.00 0.00 0.00 4.24
286 287 4.221262 TGCAATTATTTCAGGAAGCTGCTT 59.779 37.500 15.92 15.92 0.00 3.91
287 288 5.418524 TGCAATTATTTCAGGAAGCTGCTTA 59.581 36.000 15.95 0.00 0.00 3.09
288 289 6.097270 TGCAATTATTTCAGGAAGCTGCTTAT 59.903 34.615 15.95 6.60 0.00 1.73
289 290 6.982724 GCAATTATTTCAGGAAGCTGCTTATT 59.017 34.615 15.95 5.22 0.00 1.40
290 291 8.137437 GCAATTATTTCAGGAAGCTGCTTATTA 58.863 33.333 15.95 0.00 0.00 0.98
295 296 7.701539 TTTCAGGAAGCTGCTTATTATTTCA 57.298 32.000 15.95 0.00 0.00 2.69
296 297 7.701539 TTCAGGAAGCTGCTTATTATTTCAA 57.298 32.000 15.95 0.00 0.00 2.69
297 298 7.325660 TCAGGAAGCTGCTTATTATTTCAAG 57.674 36.000 15.95 0.00 0.00 3.02
298 299 6.886459 TCAGGAAGCTGCTTATTATTTCAAGT 59.114 34.615 15.95 0.00 0.00 3.16
299 300 8.046708 TCAGGAAGCTGCTTATTATTTCAAGTA 58.953 33.333 15.95 0.00 0.00 2.24
300 301 8.677300 CAGGAAGCTGCTTATTATTTCAAGTAA 58.323 33.333 15.95 0.00 0.00 2.24
301 302 9.243105 AGGAAGCTGCTTATTATTTCAAGTAAA 57.757 29.630 15.95 0.00 0.00 2.01
314 315 9.897744 TTATTTCAAGTAAATGAACTCAAGCTG 57.102 29.630 0.00 0.00 38.95 4.24
315 316 6.942532 TTCAAGTAAATGAACTCAAGCTGT 57.057 33.333 0.00 0.00 34.50 4.40
316 317 8.445275 TTTCAAGTAAATGAACTCAAGCTGTA 57.555 30.769 0.00 0.00 38.95 2.74
317 318 7.421530 TCAAGTAAATGAACTCAAGCTGTAC 57.578 36.000 0.00 0.00 0.00 2.90
318 319 6.145534 TCAAGTAAATGAACTCAAGCTGTACG 59.854 38.462 0.00 0.00 0.00 3.67
319 320 5.539048 AGTAAATGAACTCAAGCTGTACGT 58.461 37.500 0.00 0.00 0.00 3.57
320 321 4.732285 AAATGAACTCAAGCTGTACGTG 57.268 40.909 0.00 0.00 0.00 4.49
321 322 2.882927 TGAACTCAAGCTGTACGTGT 57.117 45.000 0.00 0.00 0.00 4.49
322 323 2.739292 TGAACTCAAGCTGTACGTGTC 58.261 47.619 0.00 0.00 0.00 3.67
323 324 2.100087 TGAACTCAAGCTGTACGTGTCA 59.900 45.455 0.00 0.00 0.00 3.58
324 325 3.243737 TGAACTCAAGCTGTACGTGTCAT 60.244 43.478 0.00 0.00 0.00 3.06
325 326 3.386768 ACTCAAGCTGTACGTGTCATT 57.613 42.857 0.00 0.00 0.00 2.57
326 327 3.728845 ACTCAAGCTGTACGTGTCATTT 58.271 40.909 0.00 0.00 0.00 2.32
327 328 4.878439 ACTCAAGCTGTACGTGTCATTTA 58.122 39.130 0.00 0.00 0.00 1.40
328 329 4.684703 ACTCAAGCTGTACGTGTCATTTAC 59.315 41.667 0.00 0.00 0.00 2.01
329 330 4.623002 TCAAGCTGTACGTGTCATTTACA 58.377 39.130 0.00 0.00 35.06 2.41
330 331 5.234752 TCAAGCTGTACGTGTCATTTACAT 58.765 37.500 0.00 0.00 41.10 2.29
331 332 5.347635 TCAAGCTGTACGTGTCATTTACATC 59.652 40.000 0.00 0.00 41.10 3.06
332 333 4.816392 AGCTGTACGTGTCATTTACATCA 58.184 39.130 0.00 0.00 41.10 3.07
333 334 4.864806 AGCTGTACGTGTCATTTACATCAG 59.135 41.667 0.00 0.00 41.10 2.90
334 335 4.625742 GCTGTACGTGTCATTTACATCAGT 59.374 41.667 0.00 0.00 41.10 3.41
335 336 5.220228 GCTGTACGTGTCATTTACATCAGTC 60.220 44.000 0.00 0.00 41.10 3.51
336 337 4.854839 TGTACGTGTCATTTACATCAGTCG 59.145 41.667 0.00 0.00 41.10 4.18
337 338 2.666508 ACGTGTCATTTACATCAGTCGC 59.333 45.455 0.00 0.00 41.10 5.19
338 339 2.666022 CGTGTCATTTACATCAGTCGCA 59.334 45.455 0.00 0.00 41.10 5.10
339 340 3.122780 CGTGTCATTTACATCAGTCGCAA 59.877 43.478 0.00 0.00 41.10 4.85
340 341 4.376920 CGTGTCATTTACATCAGTCGCAAA 60.377 41.667 0.00 0.00 41.10 3.68
341 342 4.846137 GTGTCATTTACATCAGTCGCAAAC 59.154 41.667 0.00 0.00 41.10 2.93
342 343 4.081761 GTCATTTACATCAGTCGCAAACG 58.918 43.478 0.00 0.00 42.01 3.60
343 344 6.527788 TGTCATTTACATCAGTCGCAAACGA 61.528 40.000 0.00 0.00 38.61 3.85
344 345 7.933715 TGTCATTTACATCAGTCGCAAACGAA 61.934 38.462 0.00 0.00 41.20 3.85
345 346 9.310282 TGTCATTTACATCAGTCGCAAACGAAA 62.310 37.037 0.00 0.00 41.20 3.46
355 356 2.492001 CGCAAACGAAACAATACTCCG 58.508 47.619 0.00 0.00 43.93 4.63
356 357 2.096614 CGCAAACGAAACAATACTCCGT 60.097 45.455 0.00 0.00 43.93 4.69
357 358 3.605231 CGCAAACGAAACAATACTCCGTT 60.605 43.478 0.00 0.00 43.98 4.44
360 361 5.488645 AAACGAAACAATACTCCGTTTGT 57.511 34.783 9.84 0.00 46.97 2.83
361 362 5.488645 AACGAAACAATACTCCGTTTGTT 57.511 34.783 0.00 0.00 45.39 2.83
366 367 4.911514 ACAATACTCCGTTTGTTTTGCT 57.088 36.364 0.00 0.00 32.28 3.91
367 368 6.380095 AACAATACTCCGTTTGTTTTGCTA 57.620 33.333 0.00 0.00 41.90 3.49
368 369 6.569179 ACAATACTCCGTTTGTTTTGCTAT 57.431 33.333 0.00 0.00 32.28 2.97
369 370 7.675962 ACAATACTCCGTTTGTTTTGCTATA 57.324 32.000 0.00 0.00 32.28 1.31
370 371 8.276252 ACAATACTCCGTTTGTTTTGCTATAT 57.724 30.769 0.00 0.00 32.28 0.86
371 372 8.181573 ACAATACTCCGTTTGTTTTGCTATATG 58.818 33.333 0.00 0.00 32.28 1.78
372 373 7.859325 ATACTCCGTTTGTTTTGCTATATGT 57.141 32.000 0.00 0.00 0.00 2.29
373 374 6.178239 ACTCCGTTTGTTTTGCTATATGTC 57.822 37.500 0.00 0.00 0.00 3.06
374 375 5.703592 ACTCCGTTTGTTTTGCTATATGTCA 59.296 36.000 0.00 0.00 0.00 3.58
375 376 6.374333 ACTCCGTTTGTTTTGCTATATGTCAT 59.626 34.615 0.00 0.00 0.00 3.06
376 377 6.550843 TCCGTTTGTTTTGCTATATGTCATG 58.449 36.000 0.00 0.00 0.00 3.07
377 378 6.150307 TCCGTTTGTTTTGCTATATGTCATGT 59.850 34.615 0.00 0.00 0.00 3.21
378 379 6.806249 CCGTTTGTTTTGCTATATGTCATGTT 59.194 34.615 0.00 0.00 0.00 2.71
379 380 7.328249 CCGTTTGTTTTGCTATATGTCATGTTT 59.672 33.333 0.00 0.00 0.00 2.83
380 381 9.335891 CGTTTGTTTTGCTATATGTCATGTTTA 57.664 29.630 0.00 0.00 0.00 2.01
384 385 9.715123 TGTTTTGCTATATGTCATGTTTATTCG 57.285 29.630 0.00 0.00 0.00 3.34
385 386 9.716507 GTTTTGCTATATGTCATGTTTATTCGT 57.283 29.630 0.00 0.00 0.00 3.85
393 394 9.882996 ATATGTCATGTTTATTCGTAATTGCTG 57.117 29.630 0.00 0.00 0.00 4.41
394 395 7.139896 TGTCATGTTTATTCGTAATTGCTGT 57.860 32.000 0.00 0.00 0.00 4.40
395 396 7.589395 TGTCATGTTTATTCGTAATTGCTGTT 58.411 30.769 0.00 0.00 0.00 3.16
396 397 8.079203 TGTCATGTTTATTCGTAATTGCTGTTT 58.921 29.630 0.00 0.00 0.00 2.83
397 398 8.575454 GTCATGTTTATTCGTAATTGCTGTTTC 58.425 33.333 0.00 0.00 0.00 2.78
398 399 8.293157 TCATGTTTATTCGTAATTGCTGTTTCA 58.707 29.630 0.00 0.00 0.00 2.69
399 400 7.845617 TGTTTATTCGTAATTGCTGTTTCAC 57.154 32.000 0.00 0.00 0.00 3.18
400 401 6.575572 TGTTTATTCGTAATTGCTGTTTCACG 59.424 34.615 0.00 0.00 0.00 4.35
401 402 6.469139 TTATTCGTAATTGCTGTTTCACGA 57.531 33.333 0.00 0.00 36.70 4.35
402 403 5.545658 ATTCGTAATTGCTGTTTCACGAT 57.454 34.783 0.00 0.00 38.12 3.73
403 404 6.656314 ATTCGTAATTGCTGTTTCACGATA 57.344 33.333 0.00 0.00 38.12 2.92
404 405 6.469139 TTCGTAATTGCTGTTTCACGATAA 57.531 33.333 0.00 0.00 38.12 1.75
405 406 6.656314 TCGTAATTGCTGTTTCACGATAAT 57.344 33.333 0.00 0.00 33.88 1.28
406 407 7.067532 TCGTAATTGCTGTTTCACGATAATT 57.932 32.000 0.00 0.00 33.88 1.40
407 408 6.958752 TCGTAATTGCTGTTTCACGATAATTG 59.041 34.615 0.00 0.00 33.88 2.32
408 409 6.740905 CGTAATTGCTGTTTCACGATAATTGT 59.259 34.615 0.00 0.00 0.00 2.71
409 410 6.932901 AATTGCTGTTTCACGATAATTGTG 57.067 33.333 0.00 0.00 38.70 3.33
410 411 3.820689 TGCTGTTTCACGATAATTGTGC 58.179 40.909 0.00 0.00 37.26 4.57
411 412 3.171277 GCTGTTTCACGATAATTGTGCC 58.829 45.455 0.00 0.00 37.26 5.01
412 413 3.758300 CTGTTTCACGATAATTGTGCCC 58.242 45.455 0.00 0.00 37.26 5.36
413 414 3.149981 TGTTTCACGATAATTGTGCCCA 58.850 40.909 0.00 0.00 37.26 5.36
414 415 3.761218 TGTTTCACGATAATTGTGCCCAT 59.239 39.130 0.00 0.00 37.26 4.00
415 416 4.142491 TGTTTCACGATAATTGTGCCCATC 60.142 41.667 0.00 0.00 37.26 3.51
416 417 3.274095 TCACGATAATTGTGCCCATCA 57.726 42.857 0.00 0.00 37.26 3.07
417 418 3.205338 TCACGATAATTGTGCCCATCAG 58.795 45.455 0.00 0.00 37.26 2.90
418 419 2.945008 CACGATAATTGTGCCCATCAGT 59.055 45.455 0.00 0.00 0.00 3.41
419 420 3.378112 CACGATAATTGTGCCCATCAGTT 59.622 43.478 0.00 0.00 0.00 3.16
420 421 4.574421 CACGATAATTGTGCCCATCAGTTA 59.426 41.667 0.00 0.00 0.00 2.24
421 422 4.816385 ACGATAATTGTGCCCATCAGTTAG 59.184 41.667 0.00 0.00 0.00 2.34
422 423 5.056480 CGATAATTGTGCCCATCAGTTAGA 58.944 41.667 0.00 0.00 0.00 2.10
423 424 5.702670 CGATAATTGTGCCCATCAGTTAGAT 59.297 40.000 0.00 0.00 37.48 1.98
424 425 6.873605 CGATAATTGTGCCCATCAGTTAGATA 59.126 38.462 0.00 0.00 34.43 1.98
425 426 7.387673 CGATAATTGTGCCCATCAGTTAGATAA 59.612 37.037 0.00 0.00 34.43 1.75
426 427 8.995027 ATAATTGTGCCCATCAGTTAGATAAA 57.005 30.769 0.00 0.00 34.43 1.40
427 428 7.716799 AATTGTGCCCATCAGTTAGATAAAA 57.283 32.000 0.00 0.00 34.43 1.52
428 429 7.716799 ATTGTGCCCATCAGTTAGATAAAAA 57.283 32.000 0.00 0.00 34.43 1.94
453 454 9.511272 AAAAGGGTTGTTAATTACTACTACAGG 57.489 33.333 4.89 0.00 33.68 4.00
454 455 7.803487 AGGGTTGTTAATTACTACTACAGGT 57.197 36.000 4.89 0.00 33.68 4.00
455 456 7.845037 AGGGTTGTTAATTACTACTACAGGTC 58.155 38.462 4.89 0.00 33.68 3.85
456 457 7.455638 AGGGTTGTTAATTACTACTACAGGTCA 59.544 37.037 4.89 0.00 33.68 4.02
457 458 7.547019 GGGTTGTTAATTACTACTACAGGTCAC 59.453 40.741 4.89 0.00 33.68 3.67
683 706 1.142748 CGCCGCTCCTCTCTTCATT 59.857 57.895 0.00 0.00 0.00 2.57
707 730 1.007721 CCTCTCCCCTCTTCTTCCTGA 59.992 57.143 0.00 0.00 0.00 3.86
873 959 1.069204 TGCTGCTCTTCTTCAACGAGT 59.931 47.619 0.00 0.00 0.00 4.18
898 984 1.788258 CTGCTGCTCTTCTTCAACGA 58.212 50.000 0.00 0.00 0.00 3.85
900 986 1.069204 TGCTGCTCTTCTTCAACGAGT 59.931 47.619 0.00 0.00 0.00 4.18
901 987 2.139118 GCTGCTCTTCTTCAACGAGTT 58.861 47.619 0.00 0.00 0.00 3.01
959 1045 1.194121 TCAAGCTGTGCCTCCTGCTA 61.194 55.000 0.00 0.00 38.50 3.49
1046 1132 1.229051 TCCCAGTCCCACGATGTCA 60.229 57.895 0.00 0.00 0.00 3.58
1237 1323 5.163824 CGTGAGATGCTAGATGCTTTTGAAA 60.164 40.000 0.00 0.00 43.37 2.69
1442 1528 4.020307 TGCCATGTATCTCTCTGTTGTTCA 60.020 41.667 0.00 0.00 0.00 3.18
1530 1616 0.178068 GGCGCCAATTGGACTCTCTA 59.822 55.000 29.02 0.00 37.39 2.43
2008 2095 3.303761 TTGCTGCGCCGCCTTACTA 62.304 57.895 21.42 0.00 0.00 1.82
2143 2230 3.055891 CCACATGACACCACACAGAGATA 60.056 47.826 0.00 0.00 0.00 1.98
2264 2354 1.698506 TTTCATGTCCCTGCCGTTTT 58.301 45.000 0.00 0.00 0.00 2.43
2372 2462 3.057104 TGTTGTGTTCAGGATCGTCGTAT 60.057 43.478 0.00 0.00 0.00 3.06
2552 2642 4.790766 GCATCATCGATTGGGTCACATTTC 60.791 45.833 0.00 0.00 0.00 2.17
3265 3358 3.119884 CGCACCAAATTGACTGCTCAATA 60.120 43.478 11.85 0.00 44.93 1.90
3319 3412 1.874872 GCACAAAGGTTACCGTTGCTA 59.125 47.619 25.50 0.00 44.58 3.49
3398 3491 2.362717 CTCCTTCTACCCTCGTCATTCC 59.637 54.545 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.610232 GCTGGTCTTGATGCCACCTT 60.610 55.000 0.00 0.00 0.00 3.50
1 2 1.001641 GCTGGTCTTGATGCCACCT 60.002 57.895 0.00 0.00 0.00 4.00
2 3 1.303561 TGCTGGTCTTGATGCCACC 60.304 57.895 0.00 0.00 0.00 4.61
3 4 1.589716 GGTGCTGGTCTTGATGCCAC 61.590 60.000 0.00 0.00 0.00 5.01
4 5 1.303561 GGTGCTGGTCTTGATGCCA 60.304 57.895 0.00 0.00 0.00 4.92
5 6 1.303561 TGGTGCTGGTCTTGATGCC 60.304 57.895 0.00 0.00 0.00 4.40
6 7 1.589716 GGTGGTGCTGGTCTTGATGC 61.590 60.000 0.00 0.00 0.00 3.91
7 8 0.037303 AGGTGGTGCTGGTCTTGATG 59.963 55.000 0.00 0.00 0.00 3.07
8 9 1.279271 GTAGGTGGTGCTGGTCTTGAT 59.721 52.381 0.00 0.00 0.00 2.57
9 10 0.685097 GTAGGTGGTGCTGGTCTTGA 59.315 55.000 0.00 0.00 0.00 3.02
10 11 0.687354 AGTAGGTGGTGCTGGTCTTG 59.313 55.000 0.00 0.00 0.00 3.02
11 12 0.687354 CAGTAGGTGGTGCTGGTCTT 59.313 55.000 0.00 0.00 35.33 3.01
12 13 2.366469 CAGTAGGTGGTGCTGGTCT 58.634 57.895 0.00 0.00 35.33 3.85
16 17 1.903877 CTCCCCAGTAGGTGGTGCTG 61.904 65.000 0.00 0.00 46.37 4.41
17 18 1.613630 CTCCCCAGTAGGTGGTGCT 60.614 63.158 0.00 0.00 46.37 4.40
18 19 1.198759 TTCTCCCCAGTAGGTGGTGC 61.199 60.000 0.00 0.00 46.37 5.01
19 20 0.905357 CTTCTCCCCAGTAGGTGGTG 59.095 60.000 0.00 0.00 46.37 4.17
20 21 0.790993 TCTTCTCCCCAGTAGGTGGT 59.209 55.000 0.00 0.00 46.37 4.16
22 23 4.030913 TGTATTCTTCTCCCCAGTAGGTG 58.969 47.826 0.00 0.00 0.00 4.00
23 24 4.348020 TGTATTCTTCTCCCCAGTAGGT 57.652 45.455 0.00 0.00 0.00 3.08
24 25 4.284746 GGATGTATTCTTCTCCCCAGTAGG 59.715 50.000 0.00 0.00 0.00 3.18
25 26 5.011533 CAGGATGTATTCTTCTCCCCAGTAG 59.988 48.000 0.00 0.00 0.00 2.57
26 27 4.901849 CAGGATGTATTCTTCTCCCCAGTA 59.098 45.833 0.00 0.00 0.00 2.74
27 28 3.713764 CAGGATGTATTCTTCTCCCCAGT 59.286 47.826 0.00 0.00 0.00 4.00
28 29 3.495806 GCAGGATGTATTCTTCTCCCCAG 60.496 52.174 0.00 0.00 39.31 4.45
29 30 2.439507 GCAGGATGTATTCTTCTCCCCA 59.560 50.000 0.00 0.00 39.31 4.96
30 31 2.224646 GGCAGGATGTATTCTTCTCCCC 60.225 54.545 0.00 0.00 39.31 4.81
31 32 2.224646 GGGCAGGATGTATTCTTCTCCC 60.225 54.545 0.00 0.00 39.31 4.30
32 33 2.224646 GGGGCAGGATGTATTCTTCTCC 60.225 54.545 0.00 0.00 39.31 3.71
33 34 2.224646 GGGGGCAGGATGTATTCTTCTC 60.225 54.545 0.00 0.00 39.31 2.87
34 35 1.777272 GGGGGCAGGATGTATTCTTCT 59.223 52.381 0.00 0.00 39.31 2.85
35 36 1.543429 CGGGGGCAGGATGTATTCTTC 60.543 57.143 0.00 0.00 39.31 2.87
36 37 0.474184 CGGGGGCAGGATGTATTCTT 59.526 55.000 0.00 0.00 39.31 2.52
37 38 0.399949 TCGGGGGCAGGATGTATTCT 60.400 55.000 0.00 0.00 39.31 2.40
38 39 0.472471 TTCGGGGGCAGGATGTATTC 59.528 55.000 0.00 0.00 39.31 1.75
39 40 0.923358 TTTCGGGGGCAGGATGTATT 59.077 50.000 0.00 0.00 39.31 1.89
40 41 0.182775 GTTTCGGGGGCAGGATGTAT 59.817 55.000 0.00 0.00 39.31 2.29
41 42 1.202099 TGTTTCGGGGGCAGGATGTA 61.202 55.000 0.00 0.00 39.31 2.29
42 43 1.863155 ATGTTTCGGGGGCAGGATGT 61.863 55.000 0.00 0.00 39.31 3.06
43 44 0.182537 TATGTTTCGGGGGCAGGATG 59.817 55.000 0.00 0.00 40.87 3.51
44 45 0.474184 CTATGTTTCGGGGGCAGGAT 59.526 55.000 0.00 0.00 0.00 3.24
45 46 1.632018 CCTATGTTTCGGGGGCAGGA 61.632 60.000 0.00 0.00 0.00 3.86
46 47 1.152963 CCTATGTTTCGGGGGCAGG 60.153 63.158 0.00 0.00 0.00 4.85
47 48 0.474184 ATCCTATGTTTCGGGGGCAG 59.526 55.000 0.00 0.00 0.00 4.85
48 49 1.418637 GTATCCTATGTTTCGGGGGCA 59.581 52.381 0.00 0.00 0.00 5.36
49 50 1.271217 GGTATCCTATGTTTCGGGGGC 60.271 57.143 0.00 0.00 0.00 5.80
50 51 2.335933 AGGTATCCTATGTTTCGGGGG 58.664 52.381 0.00 0.00 28.47 5.40
51 52 5.757099 AATAGGTATCCTATGTTTCGGGG 57.243 43.478 8.79 0.00 45.14 5.73
52 53 9.734984 AATTAAATAGGTATCCTATGTTTCGGG 57.265 33.333 8.79 0.00 45.14 5.14
58 59 8.621073 GGGGGAAATTAAATAGGTATCCTATGT 58.379 37.037 8.79 6.43 45.14 2.29
59 60 8.846804 AGGGGGAAATTAAATAGGTATCCTATG 58.153 37.037 8.79 0.00 45.14 2.23
61 62 7.463295 GGAGGGGGAAATTAAATAGGTATCCTA 59.537 40.741 0.00 0.00 40.71 2.94
62 63 6.277283 GGAGGGGGAAATTAAATAGGTATCCT 59.723 42.308 0.00 0.00 37.71 3.24
63 64 6.277283 AGGAGGGGGAAATTAAATAGGTATCC 59.723 42.308 0.00 0.00 0.00 2.59
64 65 7.344599 AGGAGGGGGAAATTAAATAGGTATC 57.655 40.000 0.00 0.00 0.00 2.24
65 66 8.839543 TTAGGAGGGGGAAATTAAATAGGTAT 57.160 34.615 0.00 0.00 0.00 2.73
66 67 8.656231 TTTAGGAGGGGGAAATTAAATAGGTA 57.344 34.615 0.00 0.00 0.00 3.08
67 68 7.548658 TTTAGGAGGGGGAAATTAAATAGGT 57.451 36.000 0.00 0.00 0.00 3.08
68 69 9.529823 GTATTTAGGAGGGGGAAATTAAATAGG 57.470 37.037 0.00 0.00 0.00 2.57
70 71 9.871175 GTGTATTTAGGAGGGGGAAATTAAATA 57.129 33.333 0.00 0.00 0.00 1.40
71 72 8.348354 TGTGTATTTAGGAGGGGGAAATTAAAT 58.652 33.333 0.00 0.00 0.00 1.40
72 73 7.710579 TGTGTATTTAGGAGGGGGAAATTAAA 58.289 34.615 0.00 0.00 0.00 1.52
73 74 7.184936 TCTGTGTATTTAGGAGGGGGAAATTAA 59.815 37.037 0.00 0.00 0.00 1.40
74 75 6.679303 TCTGTGTATTTAGGAGGGGGAAATTA 59.321 38.462 0.00 0.00 0.00 1.40
75 76 5.494706 TCTGTGTATTTAGGAGGGGGAAATT 59.505 40.000 0.00 0.00 0.00 1.82
76 77 5.043762 TCTGTGTATTTAGGAGGGGGAAAT 58.956 41.667 0.00 0.00 0.00 2.17
77 78 4.440808 TCTGTGTATTTAGGAGGGGGAAA 58.559 43.478 0.00 0.00 0.00 3.13
78 79 4.083080 TCTGTGTATTTAGGAGGGGGAA 57.917 45.455 0.00 0.00 0.00 3.97
79 80 3.788116 TCTGTGTATTTAGGAGGGGGA 57.212 47.619 0.00 0.00 0.00 4.81
80 81 5.388599 AAATCTGTGTATTTAGGAGGGGG 57.611 43.478 0.00 0.00 0.00 5.40
81 82 6.895782 TGTAAATCTGTGTATTTAGGAGGGG 58.104 40.000 0.00 0.00 33.19 4.79
82 83 8.980481 ATTGTAAATCTGTGTATTTAGGAGGG 57.020 34.615 0.00 0.00 33.19 4.30
109 110 9.787435 TCAACTTACCATTTGTAAACTCTGTAT 57.213 29.630 0.00 0.00 38.91 2.29
110 111 9.268268 CTCAACTTACCATTTGTAAACTCTGTA 57.732 33.333 0.00 0.00 38.91 2.74
111 112 7.990886 TCTCAACTTACCATTTGTAAACTCTGT 59.009 33.333 0.00 0.00 38.91 3.41
112 113 8.378172 TCTCAACTTACCATTTGTAAACTCTG 57.622 34.615 0.00 0.00 38.91 3.35
113 114 8.974060 TTCTCAACTTACCATTTGTAAACTCT 57.026 30.769 0.00 0.00 38.91 3.24
119 120 9.743057 CACATTTTTCTCAACTTACCATTTGTA 57.257 29.630 0.00 0.00 0.00 2.41
120 121 7.710475 CCACATTTTTCTCAACTTACCATTTGT 59.290 33.333 0.00 0.00 0.00 2.83
121 122 7.710475 ACCACATTTTTCTCAACTTACCATTTG 59.290 33.333 0.00 0.00 0.00 2.32
122 123 7.710475 CACCACATTTTTCTCAACTTACCATTT 59.290 33.333 0.00 0.00 0.00 2.32
123 124 7.069331 TCACCACATTTTTCTCAACTTACCATT 59.931 33.333 0.00 0.00 0.00 3.16
124 125 6.549364 TCACCACATTTTTCTCAACTTACCAT 59.451 34.615 0.00 0.00 0.00 3.55
125 126 5.888724 TCACCACATTTTTCTCAACTTACCA 59.111 36.000 0.00 0.00 0.00 3.25
126 127 6.385649 TCACCACATTTTTCTCAACTTACC 57.614 37.500 0.00 0.00 0.00 2.85
127 128 7.644157 GTCTTCACCACATTTTTCTCAACTTAC 59.356 37.037 0.00 0.00 0.00 2.34
128 129 7.556275 AGTCTTCACCACATTTTTCTCAACTTA 59.444 33.333 0.00 0.00 0.00 2.24
129 130 6.378280 AGTCTTCACCACATTTTTCTCAACTT 59.622 34.615 0.00 0.00 0.00 2.66
130 131 5.888161 AGTCTTCACCACATTTTTCTCAACT 59.112 36.000 0.00 0.00 0.00 3.16
131 132 5.973565 CAGTCTTCACCACATTTTTCTCAAC 59.026 40.000 0.00 0.00 0.00 3.18
132 133 5.652014 ACAGTCTTCACCACATTTTTCTCAA 59.348 36.000 0.00 0.00 0.00 3.02
133 134 5.192927 ACAGTCTTCACCACATTTTTCTCA 58.807 37.500 0.00 0.00 0.00 3.27
134 135 5.296780 TGACAGTCTTCACCACATTTTTCTC 59.703 40.000 1.31 0.00 0.00 2.87
135 136 5.192927 TGACAGTCTTCACCACATTTTTCT 58.807 37.500 1.31 0.00 0.00 2.52
136 137 5.499139 TGACAGTCTTCACCACATTTTTC 57.501 39.130 1.31 0.00 0.00 2.29
137 138 7.667219 AGATATGACAGTCTTCACCACATTTTT 59.333 33.333 1.31 0.00 0.00 1.94
138 139 7.120285 CAGATATGACAGTCTTCACCACATTTT 59.880 37.037 1.31 0.00 0.00 1.82
139 140 6.596888 CAGATATGACAGTCTTCACCACATTT 59.403 38.462 1.31 0.00 0.00 2.32
140 141 6.111382 CAGATATGACAGTCTTCACCACATT 58.889 40.000 1.31 0.00 0.00 2.71
141 142 5.668471 CAGATATGACAGTCTTCACCACAT 58.332 41.667 1.31 0.00 0.00 3.21
142 143 4.621510 GCAGATATGACAGTCTTCACCACA 60.622 45.833 1.31 0.00 0.00 4.17
143 144 3.868077 GCAGATATGACAGTCTTCACCAC 59.132 47.826 1.31 0.00 0.00 4.16
144 145 3.118629 GGCAGATATGACAGTCTTCACCA 60.119 47.826 1.31 0.00 0.00 4.17
145 146 3.462021 GGCAGATATGACAGTCTTCACC 58.538 50.000 1.31 0.00 0.00 4.02
146 147 3.118629 TGGGCAGATATGACAGTCTTCAC 60.119 47.826 1.31 0.00 0.00 3.18
147 148 3.106827 TGGGCAGATATGACAGTCTTCA 58.893 45.455 1.31 0.00 0.00 3.02
148 149 3.827008 TGGGCAGATATGACAGTCTTC 57.173 47.619 1.31 0.00 0.00 2.87
149 150 3.521126 AGTTGGGCAGATATGACAGTCTT 59.479 43.478 1.31 0.00 0.00 3.01
150 151 3.110705 AGTTGGGCAGATATGACAGTCT 58.889 45.455 1.31 0.00 0.00 3.24
151 152 3.550437 AGTTGGGCAGATATGACAGTC 57.450 47.619 0.00 0.00 0.00 3.51
152 153 3.614092 CAAGTTGGGCAGATATGACAGT 58.386 45.455 0.00 0.00 0.00 3.55
153 154 2.947652 CCAAGTTGGGCAGATATGACAG 59.052 50.000 14.64 0.00 32.67 3.51
154 155 2.575735 TCCAAGTTGGGCAGATATGACA 59.424 45.455 21.85 0.00 38.32 3.58
155 156 3.281727 TCCAAGTTGGGCAGATATGAC 57.718 47.619 21.85 0.00 38.32 3.06
156 157 4.018506 TCTTTCCAAGTTGGGCAGATATGA 60.019 41.667 21.85 6.61 38.32 2.15
157 158 4.272489 TCTTTCCAAGTTGGGCAGATATG 58.728 43.478 21.85 4.55 38.32 1.78
158 159 4.530875 CTCTTTCCAAGTTGGGCAGATAT 58.469 43.478 21.85 0.00 38.32 1.63
159 160 3.308402 CCTCTTTCCAAGTTGGGCAGATA 60.308 47.826 21.85 0.00 38.32 1.98
160 161 2.556114 CCTCTTTCCAAGTTGGGCAGAT 60.556 50.000 21.85 0.00 38.32 2.90
161 162 1.202927 CCTCTTTCCAAGTTGGGCAGA 60.203 52.381 21.85 19.56 38.32 4.26
162 163 1.251251 CCTCTTTCCAAGTTGGGCAG 58.749 55.000 21.85 16.66 38.32 4.85
163 164 0.827507 GCCTCTTTCCAAGTTGGGCA 60.828 55.000 21.85 6.34 38.32 5.36
164 165 0.540597 AGCCTCTTTCCAAGTTGGGC 60.541 55.000 21.85 15.23 38.32 5.36
165 166 1.074566 AGAGCCTCTTTCCAAGTTGGG 59.925 52.381 21.85 6.19 38.32 4.12
166 167 2.575805 AGAGCCTCTTTCCAAGTTGG 57.424 50.000 16.36 16.36 39.43 3.77
167 168 3.480470 TGAAGAGCCTCTTTCCAAGTTG 58.520 45.455 8.66 0.00 36.73 3.16
168 169 3.137360 ACTGAAGAGCCTCTTTCCAAGTT 59.863 43.478 8.66 0.00 36.73 2.66
169 170 2.708325 ACTGAAGAGCCTCTTTCCAAGT 59.292 45.455 8.66 7.65 36.73 3.16
170 171 3.415457 ACTGAAGAGCCTCTTTCCAAG 57.585 47.619 8.66 7.06 36.73 3.61
171 172 3.392616 AGAACTGAAGAGCCTCTTTCCAA 59.607 43.478 8.66 0.00 36.73 3.53
172 173 2.975489 AGAACTGAAGAGCCTCTTTCCA 59.025 45.455 8.66 2.09 36.73 3.53
173 174 3.694043 AGAACTGAAGAGCCTCTTTCC 57.306 47.619 8.66 0.00 36.73 3.13
174 175 4.215185 CCAAAGAACTGAAGAGCCTCTTTC 59.785 45.833 8.66 2.09 36.73 2.62
175 176 4.140536 CCAAAGAACTGAAGAGCCTCTTT 58.859 43.478 8.66 0.00 36.73 2.52
176 177 3.749226 CCAAAGAACTGAAGAGCCTCTT 58.251 45.455 6.69 6.69 39.87 2.85
177 178 2.551938 GCCAAAGAACTGAAGAGCCTCT 60.552 50.000 0.00 0.00 0.00 3.69
178 179 1.809547 GCCAAAGAACTGAAGAGCCTC 59.190 52.381 0.00 0.00 0.00 4.70
179 180 1.143684 TGCCAAAGAACTGAAGAGCCT 59.856 47.619 0.00 0.00 0.00 4.58
180 181 1.268079 GTGCCAAAGAACTGAAGAGCC 59.732 52.381 0.00 0.00 0.00 4.70
181 182 2.225467 AGTGCCAAAGAACTGAAGAGC 58.775 47.619 0.00 0.00 0.00 4.09
182 183 5.240891 TGATAGTGCCAAAGAACTGAAGAG 58.759 41.667 0.00 0.00 0.00 2.85
183 184 5.227569 TGATAGTGCCAAAGAACTGAAGA 57.772 39.130 0.00 0.00 0.00 2.87
184 185 5.239306 TGTTGATAGTGCCAAAGAACTGAAG 59.761 40.000 0.00 0.00 0.00 3.02
185 186 5.129634 TGTTGATAGTGCCAAAGAACTGAA 58.870 37.500 0.00 0.00 0.00 3.02
186 187 4.713553 TGTTGATAGTGCCAAAGAACTGA 58.286 39.130 0.00 0.00 0.00 3.41
187 188 5.239306 TCTTGTTGATAGTGCCAAAGAACTG 59.761 40.000 0.00 0.00 0.00 3.16
188 189 5.376625 TCTTGTTGATAGTGCCAAAGAACT 58.623 37.500 0.00 0.00 0.00 3.01
189 190 5.689383 TCTTGTTGATAGTGCCAAAGAAC 57.311 39.130 0.00 0.00 0.00 3.01
190 191 6.321181 AGTTTCTTGTTGATAGTGCCAAAGAA 59.679 34.615 0.00 0.00 0.00 2.52
191 192 5.827797 AGTTTCTTGTTGATAGTGCCAAAGA 59.172 36.000 0.00 0.00 0.00 2.52
192 193 5.916883 CAGTTTCTTGTTGATAGTGCCAAAG 59.083 40.000 0.00 0.00 0.00 2.77
193 194 5.221224 CCAGTTTCTTGTTGATAGTGCCAAA 60.221 40.000 0.00 0.00 0.00 3.28
194 195 4.278170 CCAGTTTCTTGTTGATAGTGCCAA 59.722 41.667 0.00 0.00 0.00 4.52
195 196 3.820467 CCAGTTTCTTGTTGATAGTGCCA 59.180 43.478 0.00 0.00 0.00 4.92
196 197 3.821033 ACCAGTTTCTTGTTGATAGTGCC 59.179 43.478 0.00 0.00 0.00 5.01
197 198 4.377431 CGACCAGTTTCTTGTTGATAGTGC 60.377 45.833 0.00 0.00 0.00 4.40
198 199 4.988540 TCGACCAGTTTCTTGTTGATAGTG 59.011 41.667 0.00 0.00 0.00 2.74
199 200 5.209818 TCGACCAGTTTCTTGTTGATAGT 57.790 39.130 0.00 0.00 0.00 2.12
200 201 5.230942 ACTCGACCAGTTTCTTGTTGATAG 58.769 41.667 0.00 0.00 26.56 2.08
201 202 5.209818 ACTCGACCAGTTTCTTGTTGATA 57.790 39.130 0.00 0.00 26.56 2.15
202 203 4.073293 ACTCGACCAGTTTCTTGTTGAT 57.927 40.909 0.00 0.00 26.56 2.57
203 204 3.536956 ACTCGACCAGTTTCTTGTTGA 57.463 42.857 0.00 0.00 26.56 3.18
204 205 4.116961 TGTACTCGACCAGTTTCTTGTTG 58.883 43.478 0.00 0.00 36.43 3.33
205 206 4.369182 CTGTACTCGACCAGTTTCTTGTT 58.631 43.478 0.00 0.00 36.43 2.83
206 207 3.799232 GCTGTACTCGACCAGTTTCTTGT 60.799 47.826 0.00 0.00 36.43 3.16
207 208 2.731976 GCTGTACTCGACCAGTTTCTTG 59.268 50.000 0.00 0.00 36.43 3.02
208 209 2.288886 GGCTGTACTCGACCAGTTTCTT 60.289 50.000 0.00 0.00 36.43 2.52
209 210 1.272769 GGCTGTACTCGACCAGTTTCT 59.727 52.381 0.00 0.00 36.43 2.52
210 211 1.000506 TGGCTGTACTCGACCAGTTTC 59.999 52.381 0.00 0.00 36.43 2.78
211 212 1.045407 TGGCTGTACTCGACCAGTTT 58.955 50.000 0.00 0.00 36.43 2.66
212 213 0.317479 GTGGCTGTACTCGACCAGTT 59.683 55.000 0.00 0.00 36.43 3.16
213 214 0.826256 TGTGGCTGTACTCGACCAGT 60.826 55.000 0.00 0.00 39.41 4.00
214 215 0.532573 ATGTGGCTGTACTCGACCAG 59.467 55.000 0.00 0.00 31.46 4.00
215 216 0.530744 GATGTGGCTGTACTCGACCA 59.469 55.000 0.00 0.00 0.00 4.02
216 217 0.525668 CGATGTGGCTGTACTCGACC 60.526 60.000 0.00 0.00 0.00 4.79
217 218 0.450583 TCGATGTGGCTGTACTCGAC 59.549 55.000 0.00 0.00 33.80 4.20
218 219 0.450583 GTCGATGTGGCTGTACTCGA 59.549 55.000 0.00 0.00 36.14 4.04
219 220 0.452184 AGTCGATGTGGCTGTACTCG 59.548 55.000 0.00 0.00 0.00 4.18
220 221 1.746220 AGAGTCGATGTGGCTGTACTC 59.254 52.381 0.00 0.00 34.85 2.59
221 222 1.746220 GAGAGTCGATGTGGCTGTACT 59.254 52.381 0.00 0.00 0.00 2.73
222 223 1.472878 TGAGAGTCGATGTGGCTGTAC 59.527 52.381 0.00 0.00 0.00 2.90
223 224 1.745653 CTGAGAGTCGATGTGGCTGTA 59.254 52.381 0.00 0.00 0.00 2.74
224 225 0.529833 CTGAGAGTCGATGTGGCTGT 59.470 55.000 0.00 0.00 0.00 4.40
225 226 0.805322 GCTGAGAGTCGATGTGGCTG 60.805 60.000 0.00 0.00 0.00 4.85
226 227 1.515020 GCTGAGAGTCGATGTGGCT 59.485 57.895 0.00 0.00 0.00 4.75
227 228 1.875813 CGCTGAGAGTCGATGTGGC 60.876 63.158 0.00 0.00 0.00 5.01
228 229 1.226802 CCGCTGAGAGTCGATGTGG 60.227 63.158 0.00 0.00 0.00 4.17
229 230 0.109086 AACCGCTGAGAGTCGATGTG 60.109 55.000 0.00 0.00 0.00 3.21
230 231 0.171455 GAACCGCTGAGAGTCGATGT 59.829 55.000 0.00 0.00 0.00 3.06
231 232 0.171231 TGAACCGCTGAGAGTCGATG 59.829 55.000 0.00 0.00 0.00 3.84
232 233 0.453793 CTGAACCGCTGAGAGTCGAT 59.546 55.000 0.00 0.00 0.00 3.59
233 234 0.605589 TCTGAACCGCTGAGAGTCGA 60.606 55.000 0.00 0.00 0.00 4.20
234 235 0.241213 TTCTGAACCGCTGAGAGTCG 59.759 55.000 0.00 0.00 0.00 4.18
235 236 1.542030 TCTTCTGAACCGCTGAGAGTC 59.458 52.381 0.00 0.00 0.00 3.36
236 237 1.543802 CTCTTCTGAACCGCTGAGAGT 59.456 52.381 0.00 0.00 0.00 3.24
237 238 1.543802 ACTCTTCTGAACCGCTGAGAG 59.456 52.381 9.70 5.06 0.00 3.20
238 239 1.621992 ACTCTTCTGAACCGCTGAGA 58.378 50.000 9.70 0.00 0.00 3.27
239 240 2.447244 AACTCTTCTGAACCGCTGAG 57.553 50.000 3.00 3.00 0.00 3.35
240 241 2.483876 CAAACTCTTCTGAACCGCTGA 58.516 47.619 0.00 0.00 0.00 4.26
241 242 1.069636 GCAAACTCTTCTGAACCGCTG 60.070 52.381 0.00 0.00 0.00 5.18
242 243 1.230324 GCAAACTCTTCTGAACCGCT 58.770 50.000 0.00 0.00 0.00 5.52
243 244 0.238553 GGCAAACTCTTCTGAACCGC 59.761 55.000 0.00 0.00 0.00 5.68
244 245 1.532868 CAGGCAAACTCTTCTGAACCG 59.467 52.381 0.00 0.00 0.00 4.44
245 246 1.268079 GCAGGCAAACTCTTCTGAACC 59.732 52.381 0.00 0.00 0.00 3.62
246 247 1.949525 TGCAGGCAAACTCTTCTGAAC 59.050 47.619 0.00 0.00 0.00 3.18
247 248 2.346766 TGCAGGCAAACTCTTCTGAA 57.653 45.000 0.00 0.00 0.00 3.02
248 249 2.346766 TTGCAGGCAAACTCTTCTGA 57.653 45.000 3.86 0.00 32.44 3.27
249 250 3.655276 AATTGCAGGCAAACTCTTCTG 57.345 42.857 11.10 0.00 39.55 3.02
250 251 5.990120 AATAATTGCAGGCAAACTCTTCT 57.010 34.783 11.10 0.00 39.55 2.85
251 252 6.158598 TGAAATAATTGCAGGCAAACTCTTC 58.841 36.000 11.10 11.59 39.55 2.87
252 253 6.100404 TGAAATAATTGCAGGCAAACTCTT 57.900 33.333 11.10 3.49 39.55 2.85
253 254 5.337009 CCTGAAATAATTGCAGGCAAACTCT 60.337 40.000 11.10 0.00 42.30 3.24
254 255 4.866486 CCTGAAATAATTGCAGGCAAACTC 59.134 41.667 11.10 4.45 42.30 3.01
255 256 4.527816 TCCTGAAATAATTGCAGGCAAACT 59.472 37.500 11.10 4.19 46.82 2.66
256 257 4.819769 TCCTGAAATAATTGCAGGCAAAC 58.180 39.130 11.10 0.46 46.82 2.93
257 258 5.480642 TTCCTGAAATAATTGCAGGCAAA 57.519 34.783 11.10 1.62 46.82 3.68
258 259 4.621274 GCTTCCTGAAATAATTGCAGGCAA 60.621 41.667 9.38 9.38 46.82 4.52
259 260 3.119029 GCTTCCTGAAATAATTGCAGGCA 60.119 43.478 12.40 2.23 46.82 4.75
260 261 3.131755 AGCTTCCTGAAATAATTGCAGGC 59.868 43.478 12.40 2.78 46.82 4.85
262 263 4.110482 GCAGCTTCCTGAAATAATTGCAG 58.890 43.478 0.00 0.00 41.77 4.41
263 264 3.765511 AGCAGCTTCCTGAAATAATTGCA 59.234 39.130 0.00 0.00 41.77 4.08
264 265 4.382345 AGCAGCTTCCTGAAATAATTGC 57.618 40.909 0.00 0.00 41.77 3.56
269 270 9.407380 TGAAATAATAAGCAGCTTCCTGAAATA 57.593 29.630 12.07 0.00 41.77 1.40
270 271 8.297470 TGAAATAATAAGCAGCTTCCTGAAAT 57.703 30.769 12.07 0.00 41.77 2.17
271 272 7.701539 TGAAATAATAAGCAGCTTCCTGAAA 57.298 32.000 12.07 0.00 41.77 2.69
272 273 7.394359 ACTTGAAATAATAAGCAGCTTCCTGAA 59.606 33.333 12.07 0.00 41.77 3.02
273 274 6.886459 ACTTGAAATAATAAGCAGCTTCCTGA 59.114 34.615 12.07 0.00 41.77 3.86
274 275 7.093322 ACTTGAAATAATAAGCAGCTTCCTG 57.907 36.000 12.07 0.00 42.13 3.86
275 276 8.807948 TTACTTGAAATAATAAGCAGCTTCCT 57.192 30.769 12.07 2.31 0.00 3.36
288 289 9.897744 CAGCTTGAGTTCATTTACTTGAAATAA 57.102 29.630 0.00 0.00 37.36 1.40
289 290 9.066892 ACAGCTTGAGTTCATTTACTTGAAATA 57.933 29.630 0.00 0.00 37.36 1.40
290 291 7.945134 ACAGCTTGAGTTCATTTACTTGAAAT 58.055 30.769 0.00 0.00 37.36 2.17
291 292 7.333528 ACAGCTTGAGTTCATTTACTTGAAA 57.666 32.000 0.00 0.00 37.36 2.69
292 293 6.942532 ACAGCTTGAGTTCATTTACTTGAA 57.057 33.333 0.00 0.00 33.32 2.69
293 294 6.145534 CGTACAGCTTGAGTTCATTTACTTGA 59.854 38.462 0.00 0.00 0.00 3.02
294 295 6.073765 ACGTACAGCTTGAGTTCATTTACTTG 60.074 38.462 0.00 0.00 0.00 3.16
295 296 5.989777 ACGTACAGCTTGAGTTCATTTACTT 59.010 36.000 0.00 0.00 0.00 2.24
296 297 5.405571 CACGTACAGCTTGAGTTCATTTACT 59.594 40.000 0.00 0.00 0.00 2.24
297 298 5.176958 ACACGTACAGCTTGAGTTCATTTAC 59.823 40.000 0.00 0.00 0.00 2.01
298 299 5.294356 ACACGTACAGCTTGAGTTCATTTA 58.706 37.500 0.00 0.00 0.00 1.40
299 300 4.127171 ACACGTACAGCTTGAGTTCATTT 58.873 39.130 0.00 0.00 0.00 2.32
300 301 3.728845 ACACGTACAGCTTGAGTTCATT 58.271 40.909 0.00 0.00 0.00 2.57
301 302 3.243737 TGACACGTACAGCTTGAGTTCAT 60.244 43.478 0.00 0.00 0.00 2.57
302 303 2.100087 TGACACGTACAGCTTGAGTTCA 59.900 45.455 0.00 0.00 0.00 3.18
303 304 2.739292 TGACACGTACAGCTTGAGTTC 58.261 47.619 0.00 0.00 0.00 3.01
304 305 2.882927 TGACACGTACAGCTTGAGTT 57.117 45.000 0.00 0.00 0.00 3.01
305 306 3.386768 AATGACACGTACAGCTTGAGT 57.613 42.857 0.00 0.00 0.00 3.41
306 307 4.684242 TGTAAATGACACGTACAGCTTGAG 59.316 41.667 0.00 0.00 31.20 3.02
307 308 4.623002 TGTAAATGACACGTACAGCTTGA 58.377 39.130 0.00 0.00 31.20 3.02
308 309 4.983215 TGTAAATGACACGTACAGCTTG 57.017 40.909 0.00 0.00 31.20 4.01
309 310 5.234752 TGATGTAAATGACACGTACAGCTT 58.765 37.500 13.69 1.46 42.17 3.74
310 311 4.816392 TGATGTAAATGACACGTACAGCT 58.184 39.130 13.69 0.00 42.17 4.24
311 312 4.625742 ACTGATGTAAATGACACGTACAGC 59.374 41.667 8.12 8.12 42.17 4.40
312 313 5.003496 CGACTGATGTAAATGACACGTACAG 59.997 44.000 0.00 0.00 42.17 2.74
313 314 4.854839 CGACTGATGTAAATGACACGTACA 59.145 41.667 0.00 3.25 42.17 2.90
314 315 4.259292 GCGACTGATGTAAATGACACGTAC 60.259 45.833 0.00 0.00 42.17 3.67
315 316 3.855379 GCGACTGATGTAAATGACACGTA 59.145 43.478 0.00 0.00 42.17 3.57
316 317 2.666508 GCGACTGATGTAAATGACACGT 59.333 45.455 0.00 0.00 42.17 4.49
317 318 2.666022 TGCGACTGATGTAAATGACACG 59.334 45.455 0.00 0.00 42.17 4.49
318 319 4.661993 TTGCGACTGATGTAAATGACAC 57.338 40.909 0.00 0.00 42.17 3.67
319 320 4.376920 CGTTTGCGACTGATGTAAATGACA 60.377 41.667 0.00 0.00 40.95 3.58
320 321 4.081761 CGTTTGCGACTGATGTAAATGAC 58.918 43.478 0.00 0.00 41.33 3.06
321 322 3.991121 TCGTTTGCGACTGATGTAAATGA 59.009 39.130 0.00 0.00 42.81 2.57
322 323 4.320667 TCGTTTGCGACTGATGTAAATG 57.679 40.909 0.00 0.00 42.81 2.32
333 334 6.351085 ACGGAGTATTGTTTCGTTTGCGAC 62.351 45.833 0.00 0.00 44.07 5.19
334 335 2.156117 CGGAGTATTGTTTCGTTTGCGA 59.844 45.455 0.00 0.00 46.36 5.10
335 336 2.096614 ACGGAGTATTGTTTCGTTTGCG 60.097 45.455 0.00 0.00 41.94 4.85
336 337 3.531262 ACGGAGTATTGTTTCGTTTGC 57.469 42.857 0.00 0.00 41.94 3.68
339 340 5.488645 AACAAACGGAGTATTGTTTCGTT 57.511 34.783 0.00 0.00 45.00 3.85
344 345 5.257082 AGCAAAACAAACGGAGTATTGTT 57.743 34.783 0.00 0.00 45.00 2.83
345 346 4.911514 AGCAAAACAAACGGAGTATTGT 57.088 36.364 0.00 0.00 45.00 2.71
346 347 8.181573 ACATATAGCAAAACAAACGGAGTATTG 58.818 33.333 0.00 0.00 45.00 1.90
347 348 8.276252 ACATATAGCAAAACAAACGGAGTATT 57.724 30.769 0.00 0.00 45.00 1.89
348 349 7.551262 TGACATATAGCAAAACAAACGGAGTAT 59.449 33.333 0.00 0.00 45.00 2.12
349 350 6.874664 TGACATATAGCAAAACAAACGGAGTA 59.125 34.615 0.00 0.00 45.00 2.59
351 352 6.176975 TGACATATAGCAAAACAAACGGAG 57.823 37.500 0.00 0.00 0.00 4.63
352 353 6.150307 ACATGACATATAGCAAAACAAACGGA 59.850 34.615 0.00 0.00 0.00 4.69
353 354 6.321717 ACATGACATATAGCAAAACAAACGG 58.678 36.000 0.00 0.00 0.00 4.44
354 355 7.795431 AACATGACATATAGCAAAACAAACG 57.205 32.000 0.00 0.00 0.00 3.60
358 359 9.715123 CGAATAAACATGACATATAGCAAAACA 57.285 29.630 0.00 0.00 0.00 2.83
359 360 9.716507 ACGAATAAACATGACATATAGCAAAAC 57.283 29.630 0.00 0.00 0.00 2.43
367 368 9.882996 CAGCAATTACGAATAAACATGACATAT 57.117 29.630 0.00 0.00 0.00 1.78
368 369 8.888716 ACAGCAATTACGAATAAACATGACATA 58.111 29.630 0.00 0.00 0.00 2.29
369 370 7.761409 ACAGCAATTACGAATAAACATGACAT 58.239 30.769 0.00 0.00 0.00 3.06
370 371 7.139896 ACAGCAATTACGAATAAACATGACA 57.860 32.000 0.00 0.00 0.00 3.58
371 372 8.447787 AAACAGCAATTACGAATAAACATGAC 57.552 30.769 0.00 0.00 0.00 3.06
372 373 8.293157 TGAAACAGCAATTACGAATAAACATGA 58.707 29.630 0.00 0.00 0.00 3.07
373 374 8.365210 GTGAAACAGCAATTACGAATAAACATG 58.635 33.333 0.00 0.00 36.32 3.21
374 375 7.270365 CGTGAAACAGCAATTACGAATAAACAT 59.730 33.333 0.00 0.00 35.74 2.71
375 376 6.575572 CGTGAAACAGCAATTACGAATAAACA 59.424 34.615 0.00 0.00 35.74 2.83
376 377 6.793203 TCGTGAAACAGCAATTACGAATAAAC 59.207 34.615 0.00 0.00 37.58 2.01
377 378 6.889494 TCGTGAAACAGCAATTACGAATAAA 58.111 32.000 0.00 0.00 37.58 1.40
378 379 6.469139 TCGTGAAACAGCAATTACGAATAA 57.531 33.333 0.00 0.00 37.58 1.40
379 380 6.656314 ATCGTGAAACAGCAATTACGAATA 57.344 33.333 0.00 0.00 42.69 1.75
380 381 5.545658 ATCGTGAAACAGCAATTACGAAT 57.454 34.783 0.00 0.00 42.69 3.34
381 382 6.469139 TTATCGTGAAACAGCAATTACGAA 57.531 33.333 0.00 0.00 42.69 3.85
382 383 6.656314 ATTATCGTGAAACAGCAATTACGA 57.344 33.333 0.00 0.00 43.42 3.43
383 384 6.740905 ACAATTATCGTGAAACAGCAATTACG 59.259 34.615 0.00 0.00 35.74 3.18
384 385 7.461416 GCACAATTATCGTGAAACAGCAATTAC 60.461 37.037 0.00 0.00 36.43 1.89
385 386 6.526325 GCACAATTATCGTGAAACAGCAATTA 59.474 34.615 0.00 0.00 36.43 1.40
386 387 5.345741 GCACAATTATCGTGAAACAGCAATT 59.654 36.000 0.00 0.00 36.43 2.32
387 388 4.858692 GCACAATTATCGTGAAACAGCAAT 59.141 37.500 0.00 0.00 36.43 3.56
388 389 4.225984 GCACAATTATCGTGAAACAGCAA 58.774 39.130 0.00 0.00 36.43 3.91
389 390 3.365868 GGCACAATTATCGTGAAACAGCA 60.366 43.478 0.00 0.00 36.43 4.41
390 391 3.171277 GGCACAATTATCGTGAAACAGC 58.829 45.455 0.00 0.00 36.43 4.40
391 392 3.190327 TGGGCACAATTATCGTGAAACAG 59.810 43.478 0.00 0.00 36.43 3.16
392 393 3.149981 TGGGCACAATTATCGTGAAACA 58.850 40.909 0.00 0.00 36.43 2.83
393 394 3.840890 TGGGCACAATTATCGTGAAAC 57.159 42.857 0.00 0.00 36.43 2.78
394 395 4.013050 TGATGGGCACAATTATCGTGAAA 58.987 39.130 0.00 0.00 36.43 2.69
395 396 3.615155 TGATGGGCACAATTATCGTGAA 58.385 40.909 0.00 0.00 36.43 3.18
396 397 3.205338 CTGATGGGCACAATTATCGTGA 58.795 45.455 0.00 0.00 36.43 4.35
397 398 2.945008 ACTGATGGGCACAATTATCGTG 59.055 45.455 0.00 0.00 37.43 4.35
398 399 3.281727 ACTGATGGGCACAATTATCGT 57.718 42.857 0.00 0.00 0.00 3.73
399 400 5.056480 TCTAACTGATGGGCACAATTATCG 58.944 41.667 0.00 0.00 0.00 2.92
400 401 8.621532 TTATCTAACTGATGGGCACAATTATC 57.378 34.615 0.00 0.00 36.65 1.75
401 402 8.995027 TTTATCTAACTGATGGGCACAATTAT 57.005 30.769 0.00 0.00 36.65 1.28
402 403 8.815565 TTTTATCTAACTGATGGGCACAATTA 57.184 30.769 0.00 0.00 36.65 1.40
403 404 7.716799 TTTTATCTAACTGATGGGCACAATT 57.283 32.000 0.00 0.00 36.65 2.32
404 405 7.716799 TTTTTATCTAACTGATGGGCACAAT 57.283 32.000 0.00 0.00 36.65 2.71
427 428 9.511272 CCTGTAGTAGTAATTAACAACCCTTTT 57.489 33.333 0.00 0.00 0.00 2.27
428 429 8.663167 ACCTGTAGTAGTAATTAACAACCCTTT 58.337 33.333 0.00 0.00 0.00 3.11
429 430 8.211030 ACCTGTAGTAGTAATTAACAACCCTT 57.789 34.615 0.00 0.00 0.00 3.95
430 431 7.455638 TGACCTGTAGTAGTAATTAACAACCCT 59.544 37.037 0.00 0.00 0.00 4.34
431 432 7.547019 GTGACCTGTAGTAGTAATTAACAACCC 59.453 40.741 0.00 0.00 0.00 4.11
432 433 8.309656 AGTGACCTGTAGTAGTAATTAACAACC 58.690 37.037 0.00 0.00 0.00 3.77
433 434 9.702494 AAGTGACCTGTAGTAGTAATTAACAAC 57.298 33.333 0.00 0.00 0.00 3.32
434 435 9.701098 CAAGTGACCTGTAGTAGTAATTAACAA 57.299 33.333 0.00 0.00 0.00 2.83
435 436 8.863086 ACAAGTGACCTGTAGTAGTAATTAACA 58.137 33.333 0.00 0.00 0.00 2.41
436 437 9.136952 CACAAGTGACCTGTAGTAGTAATTAAC 57.863 37.037 0.00 0.00 0.00 2.01
437 438 8.863086 ACACAAGTGACCTGTAGTAGTAATTAA 58.137 33.333 7.28 0.00 0.00 1.40
438 439 8.413309 ACACAAGTGACCTGTAGTAGTAATTA 57.587 34.615 7.28 0.00 0.00 1.40
439 440 7.299246 ACACAAGTGACCTGTAGTAGTAATT 57.701 36.000 7.28 0.00 0.00 1.40
440 441 6.912951 ACACAAGTGACCTGTAGTAGTAAT 57.087 37.500 7.28 0.00 0.00 1.89
441 442 6.720112 AACACAAGTGACCTGTAGTAGTAA 57.280 37.500 7.28 0.00 0.00 2.24
442 443 7.226441 TCTAACACAAGTGACCTGTAGTAGTA 58.774 38.462 7.28 0.00 0.00 1.82
443 444 6.066690 TCTAACACAAGTGACCTGTAGTAGT 58.933 40.000 7.28 0.00 0.00 2.73
444 445 6.570672 TCTAACACAAGTGACCTGTAGTAG 57.429 41.667 7.28 0.00 0.00 2.57
445 446 6.321945 TGTTCTAACACAAGTGACCTGTAGTA 59.678 38.462 7.28 0.00 33.17 1.82
446 447 5.128171 TGTTCTAACACAAGTGACCTGTAGT 59.872 40.000 7.28 0.00 33.17 2.73
447 448 5.597806 TGTTCTAACACAAGTGACCTGTAG 58.402 41.667 7.28 1.43 33.17 2.74
448 449 5.452776 CCTGTTCTAACACAAGTGACCTGTA 60.453 44.000 7.28 0.00 34.70 2.74
449 450 4.442706 CTGTTCTAACACAAGTGACCTGT 58.557 43.478 7.28 0.00 34.70 4.00
450 451 3.809832 CCTGTTCTAACACAAGTGACCTG 59.190 47.826 7.28 0.00 34.70 4.00
451 452 3.181454 CCCTGTTCTAACACAAGTGACCT 60.181 47.826 7.28 0.00 34.70 3.85
452 453 3.139077 CCCTGTTCTAACACAAGTGACC 58.861 50.000 7.28 0.00 34.70 4.02
453 454 3.805207 ACCCTGTTCTAACACAAGTGAC 58.195 45.455 7.28 0.00 34.70 3.67
454 455 4.196193 CAACCCTGTTCTAACACAAGTGA 58.804 43.478 7.28 0.00 34.70 3.41
455 456 3.945285 ACAACCCTGTTCTAACACAAGTG 59.055 43.478 0.00 0.00 34.70 3.16
456 457 3.945285 CACAACCCTGTTCTAACACAAGT 59.055 43.478 0.00 0.00 34.70 3.16
457 458 3.243068 GCACAACCCTGTTCTAACACAAG 60.243 47.826 0.00 0.00 34.70 3.16
683 706 0.415429 AAGAAGAGGGGAGAGGCTCA 59.585 55.000 18.26 0.00 31.08 4.26
873 959 0.536687 AAGAAGAGCAGCAGCAGCAA 60.537 50.000 12.92 0.00 45.49 3.91
898 984 1.228184 AAGAGCAGCAGCAGCAACT 60.228 52.632 12.92 8.01 45.49 3.16
900 986 0.954449 GAGAAGAGCAGCAGCAGCAA 60.954 55.000 12.92 0.00 45.49 3.91
901 987 1.375652 GAGAAGAGCAGCAGCAGCA 60.376 57.895 12.92 0.00 45.49 4.41
959 1045 0.601311 GCTCGTTGAAGACCAGCAGT 60.601 55.000 0.00 0.00 41.51 4.40
1046 1132 5.794894 AGTTCTGTCCGTTGAAGATAACAT 58.205 37.500 0.00 0.00 0.00 2.71
1237 1323 3.445008 TCTGATACTCTTCAGTGGCCTT 58.555 45.455 3.32 0.00 43.02 4.35
1442 1528 4.516698 CCTGTTGTAGTTGTTGCTCTTGAT 59.483 41.667 0.00 0.00 0.00 2.57
1530 1616 0.035317 TGCGACAAACATCAGCTCCT 59.965 50.000 0.00 0.00 0.00 3.69
2008 2095 0.617413 CCTGAGGATGGTGCAGAAGT 59.383 55.000 0.00 0.00 0.00 3.01
2143 2230 3.569701 ACGGAATTGACAGCACAAAGATT 59.430 39.130 0.00 0.00 33.44 2.40
2264 2354 6.472016 TGCATAGTCAGTTTAGGAACATGAA 58.528 36.000 0.00 0.00 38.26 2.57
2372 2462 0.914417 GATCCCAACCAGAGTCCCCA 60.914 60.000 0.00 0.00 0.00 4.96
3265 3358 4.101430 AGCCAAGGAAAACACATTCAACAT 59.899 37.500 0.00 0.00 0.00 2.71
3319 3412 1.757699 GTCTTCGAGCAATAGGGTCCT 59.242 52.381 0.00 0.00 40.99 3.85
3398 3491 0.603569 ACTCGGTTGTGGCAGTAGAG 59.396 55.000 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.