Multiple sequence alignment - TraesCS2B01G261200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G261200 chr2B 100.000 3323 0 0 1 3323 332330633 332333955 0.000000e+00 6137.0
1 TraesCS2B01G261200 chr2B 100.000 2058 0 0 3996 6053 332334628 332336685 0.000000e+00 3801.0
2 TraesCS2B01G261200 chr2B 91.917 532 40 3 270 800 627062927 627062398 0.000000e+00 741.0
3 TraesCS2B01G261200 chr2B 91.573 534 40 5 270 800 651134273 651134804 0.000000e+00 732.0
4 TraesCS2B01G261200 chr2B 81.463 205 23 8 5775 5967 377128947 377129148 2.920000e-33 154.0
5 TraesCS2B01G261200 chr2A 95.821 1675 50 8 866 2538 304982906 304981250 0.000000e+00 2687.0
6 TraesCS2B01G261200 chr2A 93.924 1218 48 14 3999 5200 304980111 304978904 0.000000e+00 1816.0
7 TraesCS2B01G261200 chr2A 91.342 693 27 18 2568 3227 304981264 304980572 0.000000e+00 917.0
8 TraesCS2B01G261200 chr2A 84.645 775 72 19 5290 6053 304978659 304977921 0.000000e+00 728.0
9 TraesCS2B01G261200 chr2A 98.969 97 1 0 3227 3323 304980259 304980163 2.240000e-39 174.0
10 TraesCS2B01G261200 chr2A 93.182 88 5 1 5196 5283 304978877 304978791 1.770000e-25 128.0
11 TraesCS2B01G261200 chr2A 75.234 214 44 8 19 226 82991416 82991206 6.460000e-15 93.5
12 TraesCS2B01G261200 chr2A 77.987 159 19 9 5869 6023 618986637 618986783 1.080000e-12 86.1
13 TraesCS2B01G261200 chr2A 100.000 29 0 0 5287 5315 570501538 570501566 3.000000e-03 54.7
14 TraesCS2B01G261200 chr2D 95.112 1207 47 6 3996 5200 216329864 216331060 0.000000e+00 1892.0
15 TraesCS2B01G261200 chr2D 94.752 1010 27 9 866 1866 216326958 216327950 0.000000e+00 1548.0
16 TraesCS2B01G261200 chr2D 97.769 762 14 2 1785 2546 216327951 216328709 0.000000e+00 1310.0
17 TraesCS2B01G261200 chr2D 91.677 793 27 19 2564 3323 216328691 216329477 0.000000e+00 1062.0
18 TraesCS2B01G261200 chr2D 90.944 519 44 3 5287 5802 216331248 216331766 0.000000e+00 695.0
19 TraesCS2B01G261200 chr2D 84.865 185 28 0 5869 6053 216530559 216530743 2.880000e-43 187.0
20 TraesCS2B01G261200 chr2D 76.493 268 42 12 5716 5967 200803040 200803302 6.370000e-25 126.0
21 TraesCS2B01G261200 chr2D 81.366 161 19 6 5800 5949 322811851 322812011 2.960000e-23 121.0
22 TraesCS2B01G261200 chr2D 84.545 110 12 2 1 105 609660751 609660642 2.980000e-18 104.0
23 TraesCS2B01G261200 chr5B 90.925 562 44 6 270 829 463916231 463915675 0.000000e+00 749.0
24 TraesCS2B01G261200 chr5B 91.932 533 37 6 270 800 614364620 614364092 0.000000e+00 741.0
25 TraesCS2B01G261200 chr5B 81.333 150 15 5 5830 5968 707170026 707170173 6.410000e-20 110.0
26 TraesCS2B01G261200 chr5B 91.489 47 4 0 5299 5345 553946849 553946803 1.410000e-06 65.8
27 TraesCS2B01G261200 chr6B 91.917 532 40 3 270 800 679677138 679677667 0.000000e+00 741.0
28 TraesCS2B01G261200 chr6B 91.729 532 41 3 270 800 719752189 719751660 0.000000e+00 736.0
29 TraesCS2B01G261200 chr6B 90.196 561 45 4 270 829 662147100 662147651 0.000000e+00 723.0
30 TraesCS2B01G261200 chr7A 91.902 531 40 3 270 799 540868726 540869254 0.000000e+00 739.0
31 TraesCS2B01G261200 chr7A 79.298 285 53 6 5710 5990 727202644 727202362 1.720000e-45 195.0
32 TraesCS2B01G261200 chr1B 90.586 563 42 5 270 831 605663940 605663388 0.000000e+00 736.0
33 TraesCS2B01G261200 chr5D 78.339 277 43 12 5710 5972 504022253 504022526 4.850000e-36 163.0
34 TraesCS2B01G261200 chr5D 84.685 111 13 2 1 107 175808649 175808759 2.310000e-19 108.0
35 TraesCS2B01G261200 chr3D 78.358 268 42 12 5714 5967 309774041 309774306 6.280000e-35 159.0
36 TraesCS2B01G261200 chr5A 76.774 310 54 13 5695 5990 367853669 367853364 2.260000e-34 158.0
37 TraesCS2B01G261200 chr5A 88.372 86 10 0 25 110 11231830 11231745 2.980000e-18 104.0
38 TraesCS2B01G261200 chr5A 78.107 169 34 3 5710 5876 530307200 530307033 2.980000e-18 104.0
39 TraesCS2B01G261200 chr4D 90.826 109 10 0 1193 1301 473809695 473809803 4.890000e-31 147.0
40 TraesCS2B01G261200 chr4B 90.826 109 10 0 1193 1301 596372806 596372914 4.890000e-31 147.0
41 TraesCS2B01G261200 chr4A 90.826 109 10 0 1193 1301 680370195 680370303 4.890000e-31 147.0
42 TraesCS2B01G261200 chr7D 85.981 107 15 0 1 107 7884267 7884373 1.380000e-21 115.0
43 TraesCS2B01G261200 chr7D 83.036 112 15 1 9 116 126808697 126808586 1.390000e-16 99.0
44 TraesCS2B01G261200 chr7D 78.000 150 27 3 1 144 433807643 433807494 8.360000e-14 89.8
45 TraesCS2B01G261200 chr7B 76.238 202 33 11 5778 5968 439268524 439268327 6.460000e-15 93.5
46 TraesCS2B01G261200 chrUn 77.358 159 30 3 1 153 144761446 144761604 8.360000e-14 89.8
47 TraesCS2B01G261200 chrUn 77.358 159 30 3 1 153 179838622 179838780 8.360000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G261200 chr2B 332330633 332336685 6052 False 4969.0 6137 100.0000 1 6053 2 chr2B.!!$F3 6052
1 TraesCS2B01G261200 chr2B 627062398 627062927 529 True 741.0 741 91.9170 270 800 1 chr2B.!!$R1 530
2 TraesCS2B01G261200 chr2B 651134273 651134804 531 False 732.0 732 91.5730 270 800 1 chr2B.!!$F2 530
3 TraesCS2B01G261200 chr2A 304977921 304982906 4985 True 1075.0 2687 92.9805 866 6053 6 chr2A.!!$R2 5187
4 TraesCS2B01G261200 chr2D 216326958 216331766 4808 False 1301.4 1892 94.0508 866 5802 5 chr2D.!!$F4 4936
5 TraesCS2B01G261200 chr5B 463915675 463916231 556 True 749.0 749 90.9250 270 829 1 chr5B.!!$R1 559
6 TraesCS2B01G261200 chr5B 614364092 614364620 528 True 741.0 741 91.9320 270 800 1 chr5B.!!$R3 530
7 TraesCS2B01G261200 chr6B 679677138 679677667 529 False 741.0 741 91.9170 270 800 1 chr6B.!!$F2 530
8 TraesCS2B01G261200 chr6B 719751660 719752189 529 True 736.0 736 91.7290 270 800 1 chr6B.!!$R1 530
9 TraesCS2B01G261200 chr6B 662147100 662147651 551 False 723.0 723 90.1960 270 829 1 chr6B.!!$F1 559
10 TraesCS2B01G261200 chr7A 540868726 540869254 528 False 739.0 739 91.9020 270 799 1 chr7A.!!$F1 529
11 TraesCS2B01G261200 chr1B 605663388 605663940 552 True 736.0 736 90.5860 270 831 1 chr1B.!!$R1 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 255 0.175760 CCTGACGGTCATGACGGATT 59.824 55.0 32.68 16.38 35.84 3.01 F
807 814 0.543749 CTAGGGTTCCAGGCTTCCAG 59.456 60.0 0.00 0.00 0.00 3.86 F
1509 1523 0.039798 GCATGTGTGTCCAGCTGTTG 60.040 55.0 13.81 0.00 0.00 3.33 F
1760 1776 0.387239 GGATCACAGCGTTGTTTGGC 60.387 55.0 0.63 0.00 34.62 4.52 F
2161 2259 2.863401 TATTGTGGGAGTGACGATCG 57.137 50.0 14.88 14.88 0.00 3.69 F
2570 2676 0.478507 CTCTCTCTCCCCCTCTCTCC 59.521 65.0 0.00 0.00 0.00 3.71 F
2571 2677 0.996762 TCTCTCTCCCCCTCTCTCCC 60.997 65.0 0.00 0.00 0.00 4.30 F
2575 2681 0.996762 TCTCCCCCTCTCTCCCTCTC 60.997 65.0 0.00 0.00 0.00 3.20 F
2577 2683 0.996762 TCCCCCTCTCTCCCTCTCTC 60.997 65.0 0.00 0.00 0.00 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 1298 0.107831 GTGCCTGGTAGGTGTTGTCA 59.892 55.000 0.00 0.0 37.80 3.58 R
1645 1661 0.250901 GGCATTGACCTATCGGCCAT 60.251 55.000 2.24 0.0 38.42 4.40 R
2551 2657 0.478507 GGAGAGAGGGGGAGAGAGAG 59.521 65.000 0.00 0.0 0.00 3.20 R
2561 2667 0.998945 AGGGAGAGAGGGAGAGAGGG 60.999 65.000 0.00 0.0 0.00 4.30 R
4034 4489 0.544697 ACTCAACCGGGTGTCAAGTT 59.455 50.000 21.31 0.0 0.00 2.66 R
4043 4498 3.380142 CAACAAATCAAACTCAACCGGG 58.620 45.455 6.32 0.0 0.00 5.73 R
4164 4619 5.228665 TGTTTACGTGTTACATCCGAATCA 58.771 37.500 0.00 0.0 0.00 2.57 R
4534 4989 5.620206 AGTAATGTCATGTGACCAGTTCAA 58.380 37.500 10.40 0.0 44.15 2.69 R
5170 5657 1.392589 ACCACAAACCAAGCACTCTG 58.607 50.000 0.00 0.0 0.00 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.188247 CTCTCACCGGTCACTTTTATCA 57.812 45.455 2.59 0.00 0.00 2.15
22 23 4.177026 CTCTCACCGGTCACTTTTATCAG 58.823 47.826 2.59 0.00 0.00 2.90
23 24 2.673368 CTCACCGGTCACTTTTATCAGC 59.327 50.000 2.59 0.00 0.00 4.26
24 25 1.393539 CACCGGTCACTTTTATCAGCG 59.606 52.381 2.59 0.00 0.00 5.18
25 26 1.001633 ACCGGTCACTTTTATCAGCGT 59.998 47.619 0.00 0.00 0.00 5.07
26 27 2.073816 CCGGTCACTTTTATCAGCGTT 58.926 47.619 0.00 0.00 0.00 4.84
27 28 2.482721 CCGGTCACTTTTATCAGCGTTT 59.517 45.455 0.00 0.00 0.00 3.60
28 29 3.680937 CCGGTCACTTTTATCAGCGTTTA 59.319 43.478 0.00 0.00 0.00 2.01
29 30 4.435121 CCGGTCACTTTTATCAGCGTTTAC 60.435 45.833 0.00 0.00 0.00 2.01
30 31 4.387862 CGGTCACTTTTATCAGCGTTTACT 59.612 41.667 0.00 0.00 0.00 2.24
31 32 5.444218 CGGTCACTTTTATCAGCGTTTACTC 60.444 44.000 0.00 0.00 0.00 2.59
32 33 5.638234 GGTCACTTTTATCAGCGTTTACTCT 59.362 40.000 0.00 0.00 0.00 3.24
33 34 6.147328 GGTCACTTTTATCAGCGTTTACTCTT 59.853 38.462 0.00 0.00 0.00 2.85
34 35 7.307811 GGTCACTTTTATCAGCGTTTACTCTTT 60.308 37.037 0.00 0.00 0.00 2.52
35 36 7.530861 GTCACTTTTATCAGCGTTTACTCTTTG 59.469 37.037 0.00 0.00 0.00 2.77
36 37 6.797033 CACTTTTATCAGCGTTTACTCTTTGG 59.203 38.462 0.00 0.00 0.00 3.28
37 38 6.485648 ACTTTTATCAGCGTTTACTCTTTGGT 59.514 34.615 0.00 0.00 0.00 3.67
38 39 6.870971 TTTATCAGCGTTTACTCTTTGGTT 57.129 33.333 0.00 0.00 0.00 3.67
39 40 6.870971 TTATCAGCGTTTACTCTTTGGTTT 57.129 33.333 0.00 0.00 0.00 3.27
40 41 5.767816 ATCAGCGTTTACTCTTTGGTTTT 57.232 34.783 0.00 0.00 0.00 2.43
41 42 5.570234 TCAGCGTTTACTCTTTGGTTTTT 57.430 34.783 0.00 0.00 0.00 1.94
42 43 5.575019 TCAGCGTTTACTCTTTGGTTTTTC 58.425 37.500 0.00 0.00 0.00 2.29
43 44 4.436523 CAGCGTTTACTCTTTGGTTTTTCG 59.563 41.667 0.00 0.00 0.00 3.46
44 45 4.333372 AGCGTTTACTCTTTGGTTTTTCGA 59.667 37.500 0.00 0.00 0.00 3.71
45 46 5.008316 AGCGTTTACTCTTTGGTTTTTCGAT 59.992 36.000 0.00 0.00 0.00 3.59
46 47 5.338822 GCGTTTACTCTTTGGTTTTTCGATC 59.661 40.000 0.00 0.00 0.00 3.69
47 48 6.656003 CGTTTACTCTTTGGTTTTTCGATCT 58.344 36.000 0.00 0.00 0.00 2.75
48 49 7.569957 GCGTTTACTCTTTGGTTTTTCGATCTA 60.570 37.037 0.00 0.00 0.00 1.98
49 50 8.277713 CGTTTACTCTTTGGTTTTTCGATCTAA 58.722 33.333 0.00 0.00 0.00 2.10
50 51 9.595357 GTTTACTCTTTGGTTTTTCGATCTAAG 57.405 33.333 0.00 0.00 0.00 2.18
51 52 9.550406 TTTACTCTTTGGTTTTTCGATCTAAGA 57.450 29.630 0.00 0.00 0.00 2.10
52 53 9.720769 TTACTCTTTGGTTTTTCGATCTAAGAT 57.279 29.630 0.00 0.00 0.00 2.40
53 54 8.257830 ACTCTTTGGTTTTTCGATCTAAGATC 57.742 34.615 0.00 0.00 0.00 2.75
54 55 7.063544 ACTCTTTGGTTTTTCGATCTAAGATCG 59.936 37.037 0.46 0.46 42.38 3.69
55 56 6.312918 TCTTTGGTTTTTCGATCTAAGATCGG 59.687 38.462 18.28 0.00 41.45 4.18
56 57 5.080969 TGGTTTTTCGATCTAAGATCGGT 57.919 39.130 18.28 0.00 41.45 4.69
57 58 5.484715 TGGTTTTTCGATCTAAGATCGGTT 58.515 37.500 18.28 0.00 41.45 4.44
58 59 5.935789 TGGTTTTTCGATCTAAGATCGGTTT 59.064 36.000 18.28 0.00 41.45 3.27
59 60 6.128391 TGGTTTTTCGATCTAAGATCGGTTTG 60.128 38.462 18.28 0.00 41.45 2.93
60 61 5.464965 TTTTCGATCTAAGATCGGTTTGC 57.535 39.130 18.28 0.00 41.45 3.68
61 62 3.793797 TCGATCTAAGATCGGTTTGCA 57.206 42.857 18.28 0.00 41.45 4.08
62 63 4.322080 TCGATCTAAGATCGGTTTGCAT 57.678 40.909 18.28 0.00 41.45 3.96
63 64 4.693283 TCGATCTAAGATCGGTTTGCATT 58.307 39.130 18.28 0.00 41.45 3.56
64 65 4.507756 TCGATCTAAGATCGGTTTGCATTG 59.492 41.667 18.28 0.00 41.45 2.82
65 66 4.531332 GATCTAAGATCGGTTTGCATTGC 58.469 43.478 0.46 0.46 0.00 3.56
66 67 2.682856 TCTAAGATCGGTTTGCATTGCC 59.317 45.455 6.12 0.00 0.00 4.52
67 68 0.532115 AAGATCGGTTTGCATTGCCC 59.468 50.000 6.12 0.00 0.00 5.36
68 69 0.611618 AGATCGGTTTGCATTGCCCA 60.612 50.000 6.12 0.00 0.00 5.36
69 70 0.458370 GATCGGTTTGCATTGCCCAC 60.458 55.000 6.12 2.50 0.00 4.61
70 71 1.887344 ATCGGTTTGCATTGCCCACC 61.887 55.000 13.85 13.85 0.00 4.61
71 72 2.048316 GGTTTGCATTGCCCACCG 60.048 61.111 6.12 0.00 0.00 4.94
72 73 2.733945 GTTTGCATTGCCCACCGT 59.266 55.556 6.12 0.00 0.00 4.83
73 74 1.068921 GTTTGCATTGCCCACCGTT 59.931 52.632 6.12 0.00 0.00 4.44
74 75 1.068753 TTTGCATTGCCCACCGTTG 59.931 52.632 6.12 0.00 0.00 4.10
75 76 2.985512 TTTGCATTGCCCACCGTTGC 62.986 55.000 6.12 0.00 0.00 4.17
76 77 4.740431 GCATTGCCCACCGTTGCC 62.740 66.667 0.00 0.00 0.00 4.52
77 78 4.418401 CATTGCCCACCGTTGCCG 62.418 66.667 0.00 0.00 0.00 5.69
78 79 4.966787 ATTGCCCACCGTTGCCGT 62.967 61.111 0.00 0.00 0.00 5.68
100 101 4.208686 CCCCGTGCGCCTCTACTC 62.209 72.222 4.18 0.00 0.00 2.59
101 102 4.208686 CCCGTGCGCCTCTACTCC 62.209 72.222 4.18 0.00 0.00 3.85
102 103 4.208686 CCGTGCGCCTCTACTCCC 62.209 72.222 4.18 0.00 0.00 4.30
103 104 3.449227 CGTGCGCCTCTACTCCCA 61.449 66.667 4.18 0.00 0.00 4.37
104 105 2.184579 GTGCGCCTCTACTCCCAC 59.815 66.667 4.18 0.00 0.00 4.61
105 106 2.283604 TGCGCCTCTACTCCCACA 60.284 61.111 4.18 0.00 0.00 4.17
106 107 2.184579 GCGCCTCTACTCCCACAC 59.815 66.667 0.00 0.00 0.00 3.82
107 108 2.352032 GCGCCTCTACTCCCACACT 61.352 63.158 0.00 0.00 0.00 3.55
108 109 1.035932 GCGCCTCTACTCCCACACTA 61.036 60.000 0.00 0.00 0.00 2.74
109 110 1.025812 CGCCTCTACTCCCACACTAG 58.974 60.000 0.00 0.00 0.00 2.57
110 111 1.682394 CGCCTCTACTCCCACACTAGT 60.682 57.143 0.00 0.00 0.00 2.57
111 112 1.751924 GCCTCTACTCCCACACTAGTG 59.248 57.143 21.44 21.44 45.47 2.74
112 113 1.751924 CCTCTACTCCCACACTAGTGC 59.248 57.143 22.90 0.00 44.53 4.40
113 114 2.447443 CTCTACTCCCACACTAGTGCA 58.553 52.381 22.90 3.67 44.53 4.57
114 115 2.826128 CTCTACTCCCACACTAGTGCAA 59.174 50.000 22.90 4.98 44.53 4.08
115 116 2.561419 TCTACTCCCACACTAGTGCAAC 59.439 50.000 22.90 0.00 44.53 4.17
116 117 1.128200 ACTCCCACACTAGTGCAACA 58.872 50.000 22.90 4.03 44.53 3.33
117 118 1.202651 ACTCCCACACTAGTGCAACAC 60.203 52.381 22.90 0.00 44.53 3.32
119 120 1.070134 TCCCACACTAGTGCAACACTC 59.930 52.381 22.90 0.00 41.21 3.51
120 121 1.070758 CCCACACTAGTGCAACACTCT 59.929 52.381 22.90 0.00 41.21 3.24
121 122 2.299013 CCCACACTAGTGCAACACTCTA 59.701 50.000 22.90 0.00 41.21 2.43
122 123 3.318017 CCACACTAGTGCAACACTCTAC 58.682 50.000 22.90 0.00 41.21 2.59
123 124 3.318017 CACACTAGTGCAACACTCTACC 58.682 50.000 22.90 0.00 41.21 3.18
124 125 3.005897 CACACTAGTGCAACACTCTACCT 59.994 47.826 22.90 0.00 41.21 3.08
125 126 3.256136 ACACTAGTGCAACACTCTACCTC 59.744 47.826 22.90 0.00 41.21 3.85
126 127 3.508012 CACTAGTGCAACACTCTACCTCT 59.492 47.826 10.54 0.00 41.21 3.69
127 128 4.021894 CACTAGTGCAACACTCTACCTCTT 60.022 45.833 10.54 0.00 41.21 2.85
128 129 3.669251 AGTGCAACACTCTACCTCTTC 57.331 47.619 0.00 0.00 41.21 2.87
129 130 3.235200 AGTGCAACACTCTACCTCTTCT 58.765 45.455 0.00 0.00 41.21 2.85
130 131 3.257127 AGTGCAACACTCTACCTCTTCTC 59.743 47.826 0.00 0.00 41.21 2.87
131 132 2.563179 TGCAACACTCTACCTCTTCTCC 59.437 50.000 0.00 0.00 0.00 3.71
132 133 2.416162 GCAACACTCTACCTCTTCTCCG 60.416 54.545 0.00 0.00 0.00 4.63
133 134 3.082548 CAACACTCTACCTCTTCTCCGA 58.917 50.000 0.00 0.00 0.00 4.55
134 135 2.713877 ACACTCTACCTCTTCTCCGAC 58.286 52.381 0.00 0.00 0.00 4.79
135 136 2.306512 ACACTCTACCTCTTCTCCGACT 59.693 50.000 0.00 0.00 0.00 4.18
136 137 2.940410 CACTCTACCTCTTCTCCGACTC 59.060 54.545 0.00 0.00 0.00 3.36
137 138 2.206750 CTCTACCTCTTCTCCGACTCG 58.793 57.143 0.00 0.00 0.00 4.18
138 139 1.829849 TCTACCTCTTCTCCGACTCGA 59.170 52.381 0.00 0.00 0.00 4.04
139 140 1.935199 CTACCTCTTCTCCGACTCGAC 59.065 57.143 0.00 0.00 0.00 4.20
140 141 1.020333 ACCTCTTCTCCGACTCGACG 61.020 60.000 0.00 0.00 0.00 5.12
141 142 0.740164 CCTCTTCTCCGACTCGACGA 60.740 60.000 0.00 0.00 35.09 4.20
142 143 0.370958 CTCTTCTCCGACTCGACGAC 59.629 60.000 0.00 0.00 35.09 4.34
143 144 1.018226 TCTTCTCCGACTCGACGACC 61.018 60.000 0.00 0.00 35.09 4.79
144 145 1.004080 TTCTCCGACTCGACGACCT 60.004 57.895 0.00 0.00 35.09 3.85
145 146 1.296755 TTCTCCGACTCGACGACCTG 61.297 60.000 0.00 0.00 35.09 4.00
146 147 2.031616 TCCGACTCGACGACCTGT 59.968 61.111 0.00 0.00 35.09 4.00
147 148 1.968703 CTCCGACTCGACGACCTGTC 61.969 65.000 0.00 0.00 44.53 3.51
155 156 3.311110 ACGACCTGTCATGGCCGT 61.311 61.111 0.00 0.00 41.18 5.68
156 157 2.815211 CGACCTGTCATGGCCGTG 60.815 66.667 19.62 19.62 0.00 4.94
157 158 2.436646 GACCTGTCATGGCCGTGG 60.437 66.667 24.78 11.30 0.00 4.94
158 159 3.249189 ACCTGTCATGGCCGTGGT 61.249 61.111 24.78 12.00 0.00 4.16
159 160 2.034066 CCTGTCATGGCCGTGGTT 59.966 61.111 24.78 0.00 0.00 3.67
160 161 2.040544 CCTGTCATGGCCGTGGTTC 61.041 63.158 24.78 15.21 0.00 3.62
161 162 2.358125 TGTCATGGCCGTGGTTCG 60.358 61.111 24.78 0.00 39.52 3.95
162 163 3.799755 GTCATGGCCGTGGTTCGC 61.800 66.667 24.78 6.84 38.35 4.70
172 173 4.742201 TGGTTCGCGCCTCTGCTC 62.742 66.667 0.00 0.00 34.43 4.26
185 186 4.435970 TGCTCGCCCGTCCCTCTA 62.436 66.667 0.00 0.00 0.00 2.43
186 187 3.145551 GCTCGCCCGTCCCTCTAA 61.146 66.667 0.00 0.00 0.00 2.10
187 188 3.121019 CTCGCCCGTCCCTCTAAG 58.879 66.667 0.00 0.00 0.00 2.18
188 189 1.453379 CTCGCCCGTCCCTCTAAGA 60.453 63.158 0.00 0.00 0.00 2.10
189 190 1.726533 CTCGCCCGTCCCTCTAAGAC 61.727 65.000 0.00 0.00 0.00 3.01
194 195 2.806237 GTCCCTCTAAGACGGCCG 59.194 66.667 26.86 26.86 0.00 6.13
195 196 2.050934 GTCCCTCTAAGACGGCCGT 61.051 63.158 34.89 34.89 0.00 5.68
196 197 1.751927 TCCCTCTAAGACGGCCGTC 60.752 63.158 43.92 43.92 44.86 4.79
209 210 4.261781 CCGTCGCCGCCCTACTAC 62.262 72.222 0.00 0.00 0.00 2.73
210 211 4.602696 CGTCGCCGCCCTACTACG 62.603 72.222 0.00 0.00 0.00 3.51
211 212 3.204827 GTCGCCGCCCTACTACGA 61.205 66.667 0.00 0.00 0.00 3.43
212 213 3.204827 TCGCCGCCCTACTACGAC 61.205 66.667 0.00 0.00 0.00 4.34
213 214 4.261781 CGCCGCCCTACTACGACC 62.262 72.222 0.00 0.00 0.00 4.79
214 215 4.261781 GCCGCCCTACTACGACCG 62.262 72.222 0.00 0.00 0.00 4.79
215 216 3.589881 CCGCCCTACTACGACCGG 61.590 72.222 0.00 0.00 0.00 5.28
216 217 3.589881 CGCCCTACTACGACCGGG 61.590 72.222 6.32 0.00 39.76 5.73
217 218 3.222121 GCCCTACTACGACCGGGG 61.222 72.222 6.32 0.00 37.17 5.73
218 219 3.222121 CCCTACTACGACCGGGGC 61.222 72.222 6.32 0.00 32.91 5.80
219 220 2.123982 CCTACTACGACCGGGGCT 60.124 66.667 6.32 0.00 0.00 5.19
220 221 2.192187 CCTACTACGACCGGGGCTC 61.192 68.421 6.32 0.00 0.00 4.70
221 222 1.452651 CTACTACGACCGGGGCTCA 60.453 63.158 6.32 0.00 0.00 4.26
222 223 0.822532 CTACTACGACCGGGGCTCAT 60.823 60.000 6.32 0.00 0.00 2.90
223 224 1.105167 TACTACGACCGGGGCTCATG 61.105 60.000 6.32 0.00 0.00 3.07
224 225 3.792053 CTACGACCGGGGCTCATGC 62.792 68.421 6.32 0.00 38.76 4.06
226 227 4.776322 CGACCGGGGCTCATGCAA 62.776 66.667 6.32 0.00 41.91 4.08
227 228 3.134127 GACCGGGGCTCATGCAAC 61.134 66.667 6.32 0.00 41.91 4.17
228 229 3.918253 GACCGGGGCTCATGCAACA 62.918 63.158 6.32 0.00 41.91 3.33
229 230 2.440796 CCGGGGCTCATGCAACAT 60.441 61.111 0.00 0.00 41.91 2.71
230 231 2.484062 CCGGGGCTCATGCAACATC 61.484 63.158 0.00 0.00 41.91 3.06
231 232 2.484062 CGGGGCTCATGCAACATCC 61.484 63.158 0.00 0.00 41.91 3.51
232 233 2.129785 GGGGCTCATGCAACATCCC 61.130 63.158 8.47 8.47 41.91 3.85
233 234 2.129785 GGGCTCATGCAACATCCCC 61.130 63.158 0.00 0.00 41.91 4.81
234 235 2.129785 GGCTCATGCAACATCCCCC 61.130 63.158 0.00 0.00 41.91 5.40
249 250 2.584608 CCCCCTGACGGTCATGAC 59.415 66.667 17.91 17.91 0.00 3.06
250 251 2.184322 CCCCTGACGGTCATGACG 59.816 66.667 19.33 16.15 37.36 4.35
251 252 2.184322 CCCTGACGGTCATGACGG 59.816 66.667 26.60 26.60 37.61 4.79
252 253 2.348104 CCCTGACGGTCATGACGGA 61.348 63.158 32.68 15.36 35.84 4.69
253 254 1.676678 CCCTGACGGTCATGACGGAT 61.677 60.000 32.68 19.84 35.84 4.18
254 255 0.175760 CCTGACGGTCATGACGGATT 59.824 55.000 32.68 16.38 35.84 3.01
255 256 1.405526 CCTGACGGTCATGACGGATTT 60.406 52.381 32.68 15.73 35.84 2.17
256 257 2.159156 CCTGACGGTCATGACGGATTTA 60.159 50.000 32.68 17.23 35.84 1.40
257 258 3.492656 CCTGACGGTCATGACGGATTTAT 60.493 47.826 32.68 15.07 35.84 1.40
258 259 4.119862 CTGACGGTCATGACGGATTTATT 58.880 43.478 32.68 14.42 35.84 1.40
259 260 4.509616 TGACGGTCATGACGGATTTATTT 58.490 39.130 32.68 13.78 35.84 1.40
260 261 5.662456 TGACGGTCATGACGGATTTATTTA 58.338 37.500 32.68 9.46 35.84 1.40
261 262 5.751509 TGACGGTCATGACGGATTTATTTAG 59.248 40.000 32.68 10.14 35.84 1.85
262 263 5.054477 ACGGTCATGACGGATTTATTTAGG 58.946 41.667 32.68 7.36 35.84 2.69
263 264 5.163385 ACGGTCATGACGGATTTATTTAGGA 60.163 40.000 32.68 0.00 35.84 2.94
264 265 5.405571 CGGTCATGACGGATTTATTTAGGAG 59.594 44.000 24.81 0.00 34.05 3.69
265 266 6.522054 GGTCATGACGGATTTATTTAGGAGA 58.478 40.000 19.33 0.00 0.00 3.71
266 267 6.424207 GGTCATGACGGATTTATTTAGGAGAC 59.576 42.308 19.33 0.00 0.00 3.36
267 268 6.984474 GTCATGACGGATTTATTTAGGAGACA 59.016 38.462 10.69 0.00 0.00 3.41
268 269 7.657761 GTCATGACGGATTTATTTAGGAGACAT 59.342 37.037 10.69 0.00 0.00 3.06
285 286 1.206132 ACATACGCCATCGAACTCCAA 59.794 47.619 0.00 0.00 39.41 3.53
300 301 1.077265 CCAAATCTGGCACCCCACT 59.923 57.895 0.00 0.00 35.79 4.00
309 310 1.302192 GCACCCCACTGCGACTAAA 60.302 57.895 0.00 0.00 0.00 1.85
369 370 2.200170 GAACCCAGCACATGTTCCGC 62.200 60.000 0.00 0.00 33.85 5.54
373 374 1.526575 CCAGCACATGTTCCGCCTTT 61.527 55.000 0.00 0.00 0.00 3.11
407 408 2.241160 TGCAAACCACAATCTGCATCT 58.759 42.857 0.00 0.00 39.77 2.90
409 410 2.229543 GCAAACCACAATCTGCATCTGA 59.770 45.455 0.00 0.00 34.87 3.27
411 412 4.619863 GCAAACCACAATCTGCATCTGATT 60.620 41.667 0.00 0.00 34.87 2.57
435 436 3.081409 TACCTCCCAAGCTCCGCC 61.081 66.667 0.00 0.00 0.00 6.13
476 477 2.813908 GCAACGGCGGAGTTCGAT 60.814 61.111 13.24 0.00 42.43 3.59
606 607 7.499232 GGAAGGATCCGAAGAATCTTTATTCAA 59.501 37.037 5.98 0.00 39.01 2.69
658 659 8.480643 AGACGATGAACAACCTAAAAATCTAG 57.519 34.615 0.00 0.00 0.00 2.43
772 778 1.079127 ACGACGCTGGAAGATTGGG 60.079 57.895 0.00 0.00 34.07 4.12
773 779 2.464459 CGACGCTGGAAGATTGGGC 61.464 63.158 0.00 0.00 34.07 5.36
800 807 4.176752 GGCGGCTAGGGTTCCAGG 62.177 72.222 0.00 0.00 0.00 4.45
801 808 4.858680 GCGGCTAGGGTTCCAGGC 62.859 72.222 0.00 0.00 0.00 4.85
802 809 3.083997 CGGCTAGGGTTCCAGGCT 61.084 66.667 0.00 0.00 35.30 4.58
803 810 2.670148 CGGCTAGGGTTCCAGGCTT 61.670 63.158 0.00 0.00 35.30 4.35
804 811 1.224870 GGCTAGGGTTCCAGGCTTC 59.775 63.158 0.00 0.00 34.66 3.86
805 812 1.224870 GCTAGGGTTCCAGGCTTCC 59.775 63.158 0.00 0.00 0.00 3.46
806 813 1.562672 GCTAGGGTTCCAGGCTTCCA 61.563 60.000 0.00 0.00 0.00 3.53
807 814 0.543749 CTAGGGTTCCAGGCTTCCAG 59.456 60.000 0.00 0.00 0.00 3.86
850 857 4.692523 AAAAATTATGACCACCTCCCCT 57.307 40.909 0.00 0.00 0.00 4.79
851 858 3.953542 AAATTATGACCACCTCCCCTC 57.046 47.619 0.00 0.00 0.00 4.30
852 859 2.587060 ATTATGACCACCTCCCCTCA 57.413 50.000 0.00 0.00 0.00 3.86
853 860 2.352561 TTATGACCACCTCCCCTCAA 57.647 50.000 0.00 0.00 0.00 3.02
854 861 2.352561 TATGACCACCTCCCCTCAAA 57.647 50.000 0.00 0.00 0.00 2.69
855 862 1.455822 ATGACCACCTCCCCTCAAAA 58.544 50.000 0.00 0.00 0.00 2.44
856 863 1.227249 TGACCACCTCCCCTCAAAAA 58.773 50.000 0.00 0.00 0.00 1.94
1284 1298 2.478894 CCGCTTCATGTACGACAAGTTT 59.521 45.455 0.00 0.00 0.00 2.66
1506 1520 1.081892 GTAGCATGTGTGTCCAGCTG 58.918 55.000 6.78 6.78 36.80 4.24
1509 1523 0.039798 GCATGTGTGTCCAGCTGTTG 60.040 55.000 13.81 0.00 0.00 3.33
1524 1538 2.485302 GCTGTTGTTGATTTGGGGCTTT 60.485 45.455 0.00 0.00 0.00 3.51
1526 1540 2.158842 TGTTGTTGATTTGGGGCTTTGG 60.159 45.455 0.00 0.00 0.00 3.28
1557 1571 6.403636 CCATGGTTACAGTATTTGAGACTTGC 60.404 42.308 2.57 0.00 0.00 4.01
1558 1572 5.616270 TGGTTACAGTATTTGAGACTTGCA 58.384 37.500 0.00 0.00 0.00 4.08
1559 1573 6.237901 TGGTTACAGTATTTGAGACTTGCAT 58.762 36.000 0.00 0.00 0.00 3.96
1560 1574 6.149308 TGGTTACAGTATTTGAGACTTGCATG 59.851 38.462 0.00 0.00 0.00 4.06
1645 1661 3.334691 CTGAGGAAGTTGAATTGGCGTA 58.665 45.455 0.00 0.00 0.00 4.42
1649 1665 2.479560 GGAAGTTGAATTGGCGTATGGC 60.480 50.000 0.56 0.56 42.51 4.40
1760 1776 0.387239 GGATCACAGCGTTGTTTGGC 60.387 55.000 0.63 0.00 34.62 4.52
2161 2259 2.863401 TATTGTGGGAGTGACGATCG 57.137 50.000 14.88 14.88 0.00 3.69
2507 2605 8.396272 ACTCTTCAGTTGCTGTTATTGTATTT 57.604 30.769 0.00 0.00 32.61 1.40
2537 2643 5.679734 CAAGTATGCTCTCTCTCTCTCTC 57.320 47.826 0.00 0.00 0.00 3.20
2538 2644 5.371526 CAAGTATGCTCTCTCTCTCTCTCT 58.628 45.833 0.00 0.00 0.00 3.10
2539 2645 5.220710 AGTATGCTCTCTCTCTCTCTCTC 57.779 47.826 0.00 0.00 0.00 3.20
2540 2646 4.904251 AGTATGCTCTCTCTCTCTCTCTCT 59.096 45.833 0.00 0.00 0.00 3.10
2541 2647 3.827008 TGCTCTCTCTCTCTCTCTCTC 57.173 52.381 0.00 0.00 0.00 3.20
2542 2648 3.378512 TGCTCTCTCTCTCTCTCTCTCT 58.621 50.000 0.00 0.00 0.00 3.10
2543 2649 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
2544 2650 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
2545 2651 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
2546 2652 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2547 2653 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2548 2654 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2549 2655 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2550 2656 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2551 2657 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2552 2658 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2553 2659 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2554 2660 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2555 2661 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2556 2662 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2557 2663 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2558 2664 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2559 2665 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2560 2666 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
2561 2667 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
2562 2668 2.370189 CTCTCTCTCTCTCTCTCTCCCC 59.630 59.091 0.00 0.00 0.00 4.81
2563 2669 1.421646 CTCTCTCTCTCTCTCTCCCCC 59.578 61.905 0.00 0.00 0.00 5.40
2564 2670 1.010793 TCTCTCTCTCTCTCTCCCCCT 59.989 57.143 0.00 0.00 0.00 4.79
2565 2671 1.421646 CTCTCTCTCTCTCTCCCCCTC 59.578 61.905 0.00 0.00 0.00 4.30
2566 2672 1.010793 TCTCTCTCTCTCTCCCCCTCT 59.989 57.143 0.00 0.00 0.00 3.69
2567 2673 1.421646 CTCTCTCTCTCTCCCCCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
2568 2674 1.010793 TCTCTCTCTCTCCCCCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
2569 2675 1.421646 CTCTCTCTCTCCCCCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
2570 2676 0.478507 CTCTCTCTCCCCCTCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
2571 2677 0.996762 TCTCTCTCCCCCTCTCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
2572 2678 0.998945 CTCTCTCCCCCTCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
2573 2679 0.996762 TCTCTCCCCCTCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
2574 2680 0.998945 CTCTCCCCCTCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
2575 2681 0.996762 TCTCCCCCTCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
2576 2682 0.998945 CTCCCCCTCTCTCCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
2577 2683 0.996762 TCCCCCTCTCTCCCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
2578 2684 1.541672 CCCCTCTCTCCCTCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
2579 2685 1.541672 CCCTCTCTCCCTCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
2650 2756 3.872696 CAAATTTTACTGGCATTCCCCC 58.127 45.455 0.00 0.00 0.00 5.40
2747 2856 3.072184 AGAGGGGCAGTGATGTCATTATC 59.928 47.826 0.00 0.00 0.00 1.75
2884 2993 7.947890 TGGTCACATGTGATATCCTATGTACTA 59.052 37.037 30.10 9.51 42.18 1.82
2888 2997 9.194972 CACATGTGATATCCTATGTACTATCCT 57.805 37.037 21.64 0.00 32.86 3.24
3077 3189 3.609409 CGGTTCTTTAAGCAAACTGCCTC 60.609 47.826 0.00 0.00 46.52 4.70
3103 3217 4.903638 TTTATTCAGAGTTTCAGACGCG 57.096 40.909 3.53 3.53 32.79 6.01
3105 3219 2.218953 TTCAGAGTTTCAGACGCGTT 57.781 45.000 15.53 0.00 32.79 4.84
3107 3221 2.658285 TCAGAGTTTCAGACGCGTTAC 58.342 47.619 15.53 0.11 32.79 2.50
3113 3255 3.306166 AGTTTCAGACGCGTTACATATGC 59.694 43.478 15.53 0.00 35.32 3.14
3139 3281 4.221482 AGAACCTCAATTTTCATGGCCTTC 59.779 41.667 3.32 0.00 0.00 3.46
3192 3334 5.591472 ACCACATGATATTTGTGTGATCCTG 59.409 40.000 14.88 4.67 44.48 3.86
4043 4498 7.907214 ATCAGTACATCCTTTAACTTGACAC 57.093 36.000 0.00 0.00 0.00 3.67
4070 4525 4.916983 TGAGTTTGATTTGTTGGGTCAG 57.083 40.909 0.00 0.00 0.00 3.51
4164 4619 5.103686 ACTGTAATATTACTGGCATGGGGTT 60.104 40.000 26.67 8.33 37.05 4.11
4205 4660 8.464404 ACGTAAACAGAGTGTAAATGAGCTATA 58.536 33.333 0.00 0.00 0.00 1.31
4256 4711 7.160726 TCACCAATGATTTTGGATTTCCTTTC 58.839 34.615 11.16 0.00 42.06 2.62
4299 4754 8.684386 TGATTGTCACAAATTTTACTCACCTA 57.316 30.769 0.00 0.00 0.00 3.08
4534 4989 3.883489 GCAGCGGAATAGGGTTATTCTTT 59.117 43.478 7.10 0.00 43.07 2.52
4564 5019 4.455533 GGTCACATGACATTACTTTCTGCA 59.544 41.667 13.77 0.00 46.47 4.41
4601 5058 1.337167 GCACAATTTCTTGACCAGGCC 60.337 52.381 0.00 0.00 36.20 5.19
5022 5481 7.418025 GGCTGAGTATTAGAGTTAGTGATTGGT 60.418 40.741 0.00 0.00 0.00 3.67
5170 5657 0.331616 ACCCCAGGTATTTGAGCACC 59.668 55.000 0.00 0.00 32.11 5.01
5210 5722 4.858692 GGTTCCAATCACATGAAATTCACG 59.141 41.667 0.00 0.00 0.00 4.35
5240 5757 3.590824 GACAATTGTCGGGCTGGG 58.409 61.111 22.09 0.00 35.12 4.45
5284 5801 7.961351 TGCGGATAAATTTTCCCAAATGATAT 58.039 30.769 0.00 0.00 32.57 1.63
5347 5989 1.796151 CGTGATTGCTTCGTGCCAT 59.204 52.632 1.30 0.00 42.00 4.40
5381 6025 9.287818 ACTTAGTAGGGTCCTAAATTTTATGGA 57.712 33.333 0.00 0.00 0.00 3.41
5452 6096 2.172293 CAGGAAATTCAGGAGGGAGAGG 59.828 54.545 0.00 0.00 0.00 3.69
5476 6120 5.992217 GGATTACTGGTTATAGTTGCTCAGG 59.008 44.000 0.00 0.00 32.19 3.86
5513 6157 5.248640 ACGAATCCATTGATCTTGAACACT 58.751 37.500 0.00 0.00 0.00 3.55
5588 6232 3.321039 TGAGAGCTGTGATAATCCCCAT 58.679 45.455 0.00 0.00 0.00 4.00
5624 6271 2.494870 GGTACCGGCAGAAAGACTAAGA 59.505 50.000 0.00 0.00 0.00 2.10
5625 6272 3.429135 GGTACCGGCAGAAAGACTAAGAG 60.429 52.174 0.00 0.00 0.00 2.85
5644 6291 3.126831 GAGCATCTACAATCGAGGTTGG 58.873 50.000 3.94 0.00 33.40 3.77
5645 6292 2.501723 AGCATCTACAATCGAGGTTGGT 59.498 45.455 3.94 0.00 33.40 3.67
5658 6305 0.394352 GGTTGGTGAATCCGGATGCT 60.394 55.000 23.35 6.11 39.52 3.79
5681 6328 2.740714 GGTTCGTCCGCATGCAGTC 61.741 63.158 19.57 2.97 0.00 3.51
5695 6342 0.610232 GCAGTCACCAGGCAATCCTT 60.610 55.000 0.00 0.00 41.93 3.36
5724 6371 4.405680 TCCTCATTCACATCCGTGTATCTT 59.594 41.667 0.00 0.00 44.02 2.40
5762 6409 3.251479 TCGAGACATAAACATGCAGCT 57.749 42.857 0.00 0.00 0.00 4.24
5772 6419 8.004087 ACATAAACATGCAGCTTGAATAGAAT 57.996 30.769 14.99 0.00 0.00 2.40
5814 6461 5.333339 CGGCATAGAAACGGACATAGAAATG 60.333 44.000 0.00 0.00 39.17 2.32
5815 6462 5.444122 GCATAGAAACGGACATAGAAATGC 58.556 41.667 0.00 0.00 36.50 3.56
5843 6490 0.591170 ACCGCAAAAGATCACCAACG 59.409 50.000 0.00 0.00 0.00 4.10
5876 6523 2.351726 GACCGCCACAGTTCACATAATC 59.648 50.000 0.00 0.00 0.00 1.75
5877 6524 1.327460 CCGCCACAGTTCACATAATCG 59.673 52.381 0.00 0.00 0.00 3.34
5880 6527 2.029244 GCCACAGTTCACATAATCGACG 59.971 50.000 0.00 0.00 0.00 5.12
5881 6528 2.603110 CCACAGTTCACATAATCGACGG 59.397 50.000 0.00 0.00 0.00 4.79
5883 6530 3.303495 CACAGTTCACATAATCGACGGAC 59.697 47.826 0.00 0.00 0.00 4.79
5888 6544 4.182693 TCACATAATCGACGGACAAGTT 57.817 40.909 0.00 0.00 0.00 2.66
5929 6585 5.958955 ACTTGAAATTAAAGGCAGAGATGC 58.041 37.500 0.00 0.00 0.00 3.91
5936 6592 3.146182 GGCAGAGATGCCGGAGAT 58.854 61.111 5.05 0.00 45.79 2.75
5949 6605 1.279271 CCGGAGATTCACCACTTCCTT 59.721 52.381 0.00 0.00 0.00 3.36
5952 6608 2.290577 GGAGATTCACCACTTCCTTGCT 60.291 50.000 0.00 0.00 0.00 3.91
5972 6628 1.533994 GCCCTTTGCCCTTCTGGTT 60.534 57.895 0.00 0.00 36.04 3.67
5974 6630 0.178964 CCCTTTGCCCTTCTGGTTGA 60.179 55.000 0.00 0.00 36.04 3.18
5975 6631 0.961753 CCTTTGCCCTTCTGGTTGAC 59.038 55.000 0.00 0.00 36.04 3.18
5977 6633 0.181587 TTTGCCCTTCTGGTTGACGA 59.818 50.000 0.00 0.00 36.04 4.20
5978 6634 0.400213 TTGCCCTTCTGGTTGACGAT 59.600 50.000 0.00 0.00 36.04 3.73
5993 6649 0.898320 ACGATGCTGCTGTAGGAGTT 59.102 50.000 0.00 0.00 35.78 3.01
6002 6658 1.402984 GCTGTAGGAGTTCACGACAGG 60.403 57.143 7.57 0.00 38.35 4.00
6014 6670 0.836400 ACGACAGGAGGTGGGTCATT 60.836 55.000 0.00 0.00 0.00 2.57
6030 6686 1.134367 TCATTGGAGCCGTTAGAGTCG 59.866 52.381 0.00 0.00 0.00 4.18
6032 6688 1.601419 TTGGAGCCGTTAGAGTCGGG 61.601 60.000 6.50 0.00 46.90 5.14
6043 6699 3.048941 GAGTCGGGGTCGTCGGAAG 62.049 68.421 0.00 0.00 37.69 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.177026 CTGATAAAAGTGACCGGTGAGAG 58.823 47.826 14.63 0.00 0.00 3.20
1 2 3.616560 GCTGATAAAAGTGACCGGTGAGA 60.617 47.826 14.63 0.00 0.00 3.27
2 3 2.673368 GCTGATAAAAGTGACCGGTGAG 59.327 50.000 14.63 0.00 0.00 3.51
3 4 2.695359 GCTGATAAAAGTGACCGGTGA 58.305 47.619 14.63 0.00 0.00 4.02
4 5 1.393539 CGCTGATAAAAGTGACCGGTG 59.606 52.381 14.63 0.00 0.00 4.94
5 6 1.001633 ACGCTGATAAAAGTGACCGGT 59.998 47.619 6.92 6.92 0.00 5.28
6 7 1.722011 ACGCTGATAAAAGTGACCGG 58.278 50.000 0.00 0.00 0.00 5.28
7 8 3.806316 AAACGCTGATAAAAGTGACCG 57.194 42.857 0.00 0.00 0.00 4.79
8 9 5.638234 AGAGTAAACGCTGATAAAAGTGACC 59.362 40.000 0.00 0.00 0.00 4.02
9 10 6.707599 AGAGTAAACGCTGATAAAAGTGAC 57.292 37.500 0.00 0.00 0.00 3.67
10 11 7.307751 CCAAAGAGTAAACGCTGATAAAAGTGA 60.308 37.037 0.00 0.00 0.00 3.41
11 12 6.797033 CCAAAGAGTAAACGCTGATAAAAGTG 59.203 38.462 0.00 0.00 0.00 3.16
12 13 6.485648 ACCAAAGAGTAAACGCTGATAAAAGT 59.514 34.615 0.00 0.00 0.00 2.66
13 14 6.899114 ACCAAAGAGTAAACGCTGATAAAAG 58.101 36.000 0.00 0.00 0.00 2.27
14 15 6.870971 ACCAAAGAGTAAACGCTGATAAAA 57.129 33.333 0.00 0.00 0.00 1.52
15 16 6.870971 AACCAAAGAGTAAACGCTGATAAA 57.129 33.333 0.00 0.00 0.00 1.40
16 17 6.870971 AAACCAAAGAGTAAACGCTGATAA 57.129 33.333 0.00 0.00 0.00 1.75
17 18 6.870971 AAAACCAAAGAGTAAACGCTGATA 57.129 33.333 0.00 0.00 0.00 2.15
18 19 5.767816 AAAACCAAAGAGTAAACGCTGAT 57.232 34.783 0.00 0.00 0.00 2.90
19 20 5.570234 AAAAACCAAAGAGTAAACGCTGA 57.430 34.783 0.00 0.00 0.00 4.26
20 21 4.436523 CGAAAAACCAAAGAGTAAACGCTG 59.563 41.667 0.00 0.00 0.00 5.18
21 22 4.333372 TCGAAAAACCAAAGAGTAAACGCT 59.667 37.500 0.00 0.00 0.00 5.07
22 23 4.590226 TCGAAAAACCAAAGAGTAAACGC 58.410 39.130 0.00 0.00 0.00 4.84
23 24 6.656003 AGATCGAAAAACCAAAGAGTAAACG 58.344 36.000 0.00 0.00 0.00 3.60
24 25 9.595357 CTTAGATCGAAAAACCAAAGAGTAAAC 57.405 33.333 0.00 0.00 0.00 2.01
25 26 9.550406 TCTTAGATCGAAAAACCAAAGAGTAAA 57.450 29.630 0.00 0.00 0.00 2.01
26 27 9.720769 ATCTTAGATCGAAAAACCAAAGAGTAA 57.279 29.630 0.00 0.00 0.00 2.24
27 28 9.367444 GATCTTAGATCGAAAAACCAAAGAGTA 57.633 33.333 6.46 0.00 0.00 2.59
28 29 7.063544 CGATCTTAGATCGAAAAACCAAAGAGT 59.936 37.037 33.16 0.00 43.59 3.24
29 30 7.394872 CGATCTTAGATCGAAAAACCAAAGAG 58.605 38.462 33.16 4.49 43.59 2.85
30 31 6.312918 CCGATCTTAGATCGAAAAACCAAAGA 59.687 38.462 36.63 5.91 43.59 2.52
31 32 6.092259 ACCGATCTTAGATCGAAAAACCAAAG 59.908 38.462 36.63 21.66 43.59 2.77
32 33 5.935789 ACCGATCTTAGATCGAAAAACCAAA 59.064 36.000 36.63 0.00 43.59 3.28
33 34 5.484715 ACCGATCTTAGATCGAAAAACCAA 58.515 37.500 36.63 0.00 43.59 3.67
34 35 5.080969 ACCGATCTTAGATCGAAAAACCA 57.919 39.130 36.63 0.00 43.59 3.67
35 36 6.248631 CAAACCGATCTTAGATCGAAAAACC 58.751 40.000 36.63 4.89 43.59 3.27
36 37 5.733109 GCAAACCGATCTTAGATCGAAAAAC 59.267 40.000 36.63 22.30 43.59 2.43
37 38 5.410132 TGCAAACCGATCTTAGATCGAAAAA 59.590 36.000 36.63 18.77 43.59 1.94
38 39 4.932799 TGCAAACCGATCTTAGATCGAAAA 59.067 37.500 36.63 17.91 43.59 2.29
39 40 4.500127 TGCAAACCGATCTTAGATCGAAA 58.500 39.130 36.63 17.33 43.59 3.46
40 41 4.118093 TGCAAACCGATCTTAGATCGAA 57.882 40.909 36.63 17.04 43.59 3.71
41 42 3.793797 TGCAAACCGATCTTAGATCGA 57.206 42.857 36.63 18.83 43.59 3.59
42 43 4.766007 CAATGCAAACCGATCTTAGATCG 58.234 43.478 30.75 30.75 40.86 3.69
43 44 4.531332 GCAATGCAAACCGATCTTAGATC 58.469 43.478 11.92 11.92 0.00 2.75
44 45 3.316308 GGCAATGCAAACCGATCTTAGAT 59.684 43.478 7.79 0.00 0.00 1.98
45 46 2.682856 GGCAATGCAAACCGATCTTAGA 59.317 45.455 7.79 0.00 0.00 2.10
46 47 2.223572 GGGCAATGCAAACCGATCTTAG 60.224 50.000 7.79 0.00 0.00 2.18
47 48 1.748493 GGGCAATGCAAACCGATCTTA 59.252 47.619 7.79 0.00 0.00 2.10
48 49 0.532115 GGGCAATGCAAACCGATCTT 59.468 50.000 7.79 0.00 0.00 2.40
49 50 0.611618 TGGGCAATGCAAACCGATCT 60.612 50.000 7.79 0.00 0.00 2.75
50 51 0.458370 GTGGGCAATGCAAACCGATC 60.458 55.000 7.79 0.00 0.00 3.69
51 52 1.591183 GTGGGCAATGCAAACCGAT 59.409 52.632 7.79 0.00 0.00 4.18
52 53 2.569354 GGTGGGCAATGCAAACCGA 61.569 57.895 7.79 0.00 0.00 4.69
53 54 2.048316 GGTGGGCAATGCAAACCG 60.048 61.111 7.79 0.00 0.00 4.44
54 55 2.048316 CGGTGGGCAATGCAAACC 60.048 61.111 15.89 15.89 33.89 3.27
55 56 1.068921 AACGGTGGGCAATGCAAAC 59.931 52.632 7.79 4.16 0.00 2.93
56 57 1.068753 CAACGGTGGGCAATGCAAA 59.931 52.632 7.79 0.00 0.00 3.68
57 58 2.733301 CAACGGTGGGCAATGCAA 59.267 55.556 7.79 0.00 0.00 4.08
58 59 3.988525 GCAACGGTGGGCAATGCA 61.989 61.111 7.79 0.00 37.00 3.96
59 60 4.740431 GGCAACGGTGGGCAATGC 62.740 66.667 0.90 0.00 36.31 3.56
83 84 4.208686 GAGTAGAGGCGCACGGGG 62.209 72.222 10.83 0.00 0.00 5.73
84 85 4.208686 GGAGTAGAGGCGCACGGG 62.209 72.222 10.83 0.00 0.00 5.28
85 86 4.208686 GGGAGTAGAGGCGCACGG 62.209 72.222 10.83 0.00 0.00 4.94
86 87 3.449227 TGGGAGTAGAGGCGCACG 61.449 66.667 10.83 0.00 0.00 5.34
87 88 2.184579 GTGGGAGTAGAGGCGCAC 59.815 66.667 10.83 2.06 40.05 5.34
88 89 2.283604 TGTGGGAGTAGAGGCGCA 60.284 61.111 10.83 0.00 0.00 6.09
89 90 1.035932 TAGTGTGGGAGTAGAGGCGC 61.036 60.000 0.00 0.00 0.00 6.53
90 91 1.025812 CTAGTGTGGGAGTAGAGGCG 58.974 60.000 0.00 0.00 29.82 5.52
91 92 1.751924 CACTAGTGTGGGAGTAGAGGC 59.248 57.143 15.06 0.00 40.33 4.70
92 93 1.751924 GCACTAGTGTGGGAGTAGAGG 59.248 57.143 23.44 0.00 43.97 3.69
93 94 2.447443 TGCACTAGTGTGGGAGTAGAG 58.553 52.381 23.44 0.00 43.97 2.43
94 95 2.561419 GTTGCACTAGTGTGGGAGTAGA 59.439 50.000 23.44 0.00 43.97 2.59
95 96 2.299013 TGTTGCACTAGTGTGGGAGTAG 59.701 50.000 23.44 0.00 43.97 2.57
96 97 2.036733 GTGTTGCACTAGTGTGGGAGTA 59.963 50.000 23.44 2.49 43.97 2.59
97 98 1.128200 TGTTGCACTAGTGTGGGAGT 58.872 50.000 23.44 0.00 43.97 3.85
98 99 1.070758 AGTGTTGCACTAGTGTGGGAG 59.929 52.381 23.44 0.00 43.46 4.30
99 100 1.070134 GAGTGTTGCACTAGTGTGGGA 59.930 52.381 23.44 5.28 45.44 4.37
100 101 1.070758 AGAGTGTTGCACTAGTGTGGG 59.929 52.381 23.44 0.00 45.44 4.61
101 102 2.533266 AGAGTGTTGCACTAGTGTGG 57.467 50.000 23.44 0.00 45.44 4.17
102 103 3.005897 AGGTAGAGTGTTGCACTAGTGTG 59.994 47.826 23.44 0.92 45.44 3.82
103 104 3.231818 AGGTAGAGTGTTGCACTAGTGT 58.768 45.455 23.44 2.78 45.44 3.55
104 105 3.508012 AGAGGTAGAGTGTTGCACTAGTG 59.492 47.826 18.93 18.93 45.44 2.74
105 106 3.768878 AGAGGTAGAGTGTTGCACTAGT 58.231 45.455 1.43 0.00 45.44 2.57
106 107 4.461081 AGAAGAGGTAGAGTGTTGCACTAG 59.539 45.833 1.43 0.00 45.44 2.57
107 108 4.408276 AGAAGAGGTAGAGTGTTGCACTA 58.592 43.478 1.43 0.00 45.44 2.74
109 110 3.580731 GAGAAGAGGTAGAGTGTTGCAC 58.419 50.000 0.00 0.00 34.10 4.57
110 111 2.563179 GGAGAAGAGGTAGAGTGTTGCA 59.437 50.000 0.00 0.00 0.00 4.08
111 112 2.416162 CGGAGAAGAGGTAGAGTGTTGC 60.416 54.545 0.00 0.00 0.00 4.17
112 113 3.082548 TCGGAGAAGAGGTAGAGTGTTG 58.917 50.000 0.00 0.00 0.00 3.33
113 114 3.083293 GTCGGAGAAGAGGTAGAGTGTT 58.917 50.000 0.00 0.00 39.69 3.32
114 115 2.306512 AGTCGGAGAAGAGGTAGAGTGT 59.693 50.000 0.00 0.00 39.69 3.55
115 116 2.940410 GAGTCGGAGAAGAGGTAGAGTG 59.060 54.545 0.00 0.00 39.69 3.51
116 117 2.419021 CGAGTCGGAGAAGAGGTAGAGT 60.419 54.545 4.10 0.00 39.69 3.24
117 118 2.159071 TCGAGTCGGAGAAGAGGTAGAG 60.159 54.545 13.54 0.00 39.69 2.43
118 119 1.829849 TCGAGTCGGAGAAGAGGTAGA 59.170 52.381 13.54 0.00 39.69 2.59
119 120 1.935199 GTCGAGTCGGAGAAGAGGTAG 59.065 57.143 13.54 0.00 39.69 3.18
120 121 1.738365 CGTCGAGTCGGAGAAGAGGTA 60.738 57.143 13.54 0.00 39.69 3.08
121 122 1.020333 CGTCGAGTCGGAGAAGAGGT 61.020 60.000 13.54 0.00 39.69 3.85
122 123 0.740164 TCGTCGAGTCGGAGAAGAGG 60.740 60.000 13.54 0.00 39.69 3.69
123 124 0.370958 GTCGTCGAGTCGGAGAAGAG 59.629 60.000 13.54 0.00 39.69 2.85
124 125 1.018226 GGTCGTCGAGTCGGAGAAGA 61.018 60.000 13.54 0.00 39.69 2.87
125 126 1.020333 AGGTCGTCGAGTCGGAGAAG 61.020 60.000 13.54 0.00 39.69 2.85
126 127 1.004080 AGGTCGTCGAGTCGGAGAA 60.004 57.895 13.54 0.00 39.69 2.87
127 128 1.740664 CAGGTCGTCGAGTCGGAGA 60.741 63.158 13.54 9.62 0.00 3.71
128 129 1.968703 GACAGGTCGTCGAGTCGGAG 61.969 65.000 13.54 7.25 34.19 4.63
129 130 2.031516 GACAGGTCGTCGAGTCGGA 61.032 63.158 13.54 0.00 34.19 4.55
130 131 2.479650 GACAGGTCGTCGAGTCGG 59.520 66.667 13.54 0.00 34.19 4.79
140 141 2.436646 CCACGGCCATGACAGGTC 60.437 66.667 0.00 0.00 0.00 3.85
141 142 2.748058 GAACCACGGCCATGACAGGT 62.748 60.000 0.00 0.00 0.00 4.00
142 143 2.034066 AACCACGGCCATGACAGG 59.966 61.111 0.00 0.00 0.00 4.00
143 144 2.390599 CGAACCACGGCCATGACAG 61.391 63.158 0.00 0.00 38.46 3.51
144 145 2.358125 CGAACCACGGCCATGACA 60.358 61.111 0.00 0.00 38.46 3.58
145 146 3.799755 GCGAACCACGGCCATGAC 61.800 66.667 0.00 0.00 42.83 3.06
168 169 3.949885 TTAGAGGGACGGGCGAGCA 62.950 63.158 0.00 0.00 0.00 4.26
169 170 3.140225 CTTAGAGGGACGGGCGAGC 62.140 68.421 0.00 0.00 0.00 5.03
170 171 1.453379 TCTTAGAGGGACGGGCGAG 60.453 63.158 0.00 0.00 0.00 5.03
171 172 1.751927 GTCTTAGAGGGACGGGCGA 60.752 63.158 0.00 0.00 0.00 5.54
172 173 2.806237 GTCTTAGAGGGACGGGCG 59.194 66.667 0.00 0.00 0.00 6.13
177 178 2.002509 GACGGCCGTCTTAGAGGGAC 62.003 65.000 43.32 19.88 41.72 4.46
178 179 1.751927 GACGGCCGTCTTAGAGGGA 60.752 63.158 43.32 0.00 39.66 4.20
179 180 2.806237 GACGGCCGTCTTAGAGGG 59.194 66.667 43.32 15.87 41.57 4.30
180 181 2.408022 CGACGGCCGTCTTAGAGG 59.592 66.667 44.83 29.74 42.54 3.69
181 182 2.278013 GCGACGGCCGTCTTAGAG 60.278 66.667 44.83 33.16 42.54 2.43
194 195 3.204827 TCGTAGTAGGGCGGCGAC 61.205 66.667 12.98 8.16 0.00 5.19
195 196 3.204827 GTCGTAGTAGGGCGGCGA 61.205 66.667 12.98 0.00 0.00 5.54
196 197 4.261781 GGTCGTAGTAGGGCGGCG 62.262 72.222 0.51 0.51 33.04 6.46
197 198 4.261781 CGGTCGTAGTAGGGCGGC 62.262 72.222 0.00 0.00 0.00 6.53
198 199 3.589881 CCGGTCGTAGTAGGGCGG 61.590 72.222 0.00 0.00 0.00 6.13
199 200 3.589881 CCCGGTCGTAGTAGGGCG 61.590 72.222 0.00 0.00 37.07 6.13
200 201 3.222121 CCCCGGTCGTAGTAGGGC 61.222 72.222 0.00 0.00 42.47 5.19
201 202 3.222121 GCCCCGGTCGTAGTAGGG 61.222 72.222 0.00 0.00 43.41 3.53
202 203 2.123982 AGCCCCGGTCGTAGTAGG 60.124 66.667 0.00 0.00 0.00 3.18
203 204 0.822532 ATGAGCCCCGGTCGTAGTAG 60.823 60.000 0.00 0.00 32.15 2.57
204 205 1.105167 CATGAGCCCCGGTCGTAGTA 61.105 60.000 0.00 0.00 32.15 1.82
205 206 2.043248 ATGAGCCCCGGTCGTAGT 60.043 61.111 0.00 0.00 32.15 2.73
206 207 2.417516 CATGAGCCCCGGTCGTAG 59.582 66.667 0.00 0.00 32.15 3.51
207 208 3.845259 GCATGAGCCCCGGTCGTA 61.845 66.667 0.00 0.00 32.15 3.43
209 210 4.776322 TTGCATGAGCCCCGGTCG 62.776 66.667 0.00 0.00 41.13 4.79
210 211 3.134127 GTTGCATGAGCCCCGGTC 61.134 66.667 0.00 0.00 41.13 4.79
211 212 3.286694 ATGTTGCATGAGCCCCGGT 62.287 57.895 0.00 0.00 41.13 5.28
212 213 2.440796 ATGTTGCATGAGCCCCGG 60.441 61.111 0.00 0.00 41.13 5.73
213 214 2.484062 GGATGTTGCATGAGCCCCG 61.484 63.158 0.00 0.00 41.13 5.73
214 215 2.129785 GGGATGTTGCATGAGCCCC 61.130 63.158 7.45 2.30 41.13 5.80
215 216 2.129785 GGGGATGTTGCATGAGCCC 61.130 63.158 9.82 9.82 41.13 5.19
216 217 2.129785 GGGGGATGTTGCATGAGCC 61.130 63.158 0.00 0.00 41.13 4.70
217 218 3.530067 GGGGGATGTTGCATGAGC 58.470 61.111 0.00 0.00 42.57 4.26
232 233 2.584608 GTCATGACCGTCAGGGGG 59.415 66.667 15.31 0.42 43.47 5.40
233 234 2.184322 CGTCATGACCGTCAGGGG 59.816 66.667 20.03 2.56 43.47 4.79
234 235 1.676678 ATCCGTCATGACCGTCAGGG 61.677 60.000 20.03 13.72 43.47 4.45
235 236 0.175760 AATCCGTCATGACCGTCAGG 59.824 55.000 20.03 14.41 45.13 3.86
236 237 2.010145 AAATCCGTCATGACCGTCAG 57.990 50.000 20.03 5.53 0.00 3.51
237 238 3.812156 ATAAATCCGTCATGACCGTCA 57.188 42.857 20.03 3.10 0.00 4.35
238 239 5.176958 CCTAAATAAATCCGTCATGACCGTC 59.823 44.000 20.03 0.00 0.00 4.79
239 240 5.054477 CCTAAATAAATCCGTCATGACCGT 58.946 41.667 20.03 3.46 0.00 4.83
240 241 5.294356 TCCTAAATAAATCCGTCATGACCG 58.706 41.667 20.03 13.74 0.00 4.79
241 242 6.424207 GTCTCCTAAATAAATCCGTCATGACC 59.576 42.308 20.03 2.90 0.00 4.02
242 243 6.984474 TGTCTCCTAAATAAATCCGTCATGAC 59.016 38.462 16.21 16.21 0.00 3.06
243 244 7.119709 TGTCTCCTAAATAAATCCGTCATGA 57.880 36.000 0.00 0.00 0.00 3.07
244 245 7.969536 ATGTCTCCTAAATAAATCCGTCATG 57.030 36.000 0.00 0.00 0.00 3.07
245 246 7.813148 CGTATGTCTCCTAAATAAATCCGTCAT 59.187 37.037 0.00 0.00 0.00 3.06
246 247 7.143340 CGTATGTCTCCTAAATAAATCCGTCA 58.857 38.462 0.00 0.00 0.00 4.35
247 248 6.089150 GCGTATGTCTCCTAAATAAATCCGTC 59.911 42.308 0.00 0.00 0.00 4.79
248 249 5.924825 GCGTATGTCTCCTAAATAAATCCGT 59.075 40.000 0.00 0.00 0.00 4.69
249 250 5.347907 GGCGTATGTCTCCTAAATAAATCCG 59.652 44.000 0.00 0.00 0.00 4.18
250 251 6.228258 TGGCGTATGTCTCCTAAATAAATCC 58.772 40.000 0.00 0.00 0.00 3.01
251 252 7.201444 CGATGGCGTATGTCTCCTAAATAAATC 60.201 40.741 0.00 0.00 0.00 2.17
252 253 6.590292 CGATGGCGTATGTCTCCTAAATAAAT 59.410 38.462 0.00 0.00 0.00 1.40
253 254 5.924254 CGATGGCGTATGTCTCCTAAATAAA 59.076 40.000 0.00 0.00 0.00 1.40
254 255 5.242171 TCGATGGCGTATGTCTCCTAAATAA 59.758 40.000 0.00 0.00 38.98 1.40
255 256 4.763279 TCGATGGCGTATGTCTCCTAAATA 59.237 41.667 0.00 0.00 38.98 1.40
256 257 3.572682 TCGATGGCGTATGTCTCCTAAAT 59.427 43.478 0.00 0.00 38.98 1.40
257 258 2.953648 TCGATGGCGTATGTCTCCTAAA 59.046 45.455 0.00 0.00 38.98 1.85
258 259 2.578786 TCGATGGCGTATGTCTCCTAA 58.421 47.619 0.00 0.00 38.98 2.69
259 260 2.265589 TCGATGGCGTATGTCTCCTA 57.734 50.000 0.00 0.00 38.98 2.94
260 261 1.067212 GTTCGATGGCGTATGTCTCCT 59.933 52.381 0.00 0.00 38.98 3.69
261 262 1.067212 AGTTCGATGGCGTATGTCTCC 59.933 52.381 0.00 0.00 38.98 3.71
262 263 2.386249 GAGTTCGATGGCGTATGTCTC 58.614 52.381 0.00 0.00 38.98 3.36
263 264 1.067212 GGAGTTCGATGGCGTATGTCT 59.933 52.381 0.00 0.00 38.98 3.41
264 265 1.202371 TGGAGTTCGATGGCGTATGTC 60.202 52.381 0.00 0.00 38.98 3.06
265 266 0.821517 TGGAGTTCGATGGCGTATGT 59.178 50.000 0.00 0.00 38.98 2.29
266 267 1.934589 TTGGAGTTCGATGGCGTATG 58.065 50.000 0.00 0.00 38.98 2.39
267 268 2.684001 TTTGGAGTTCGATGGCGTAT 57.316 45.000 0.00 0.00 38.98 3.06
268 269 2.167693 AGATTTGGAGTTCGATGGCGTA 59.832 45.455 0.00 0.00 38.98 4.42
285 286 2.036256 GCAGTGGGGTGCCAGATT 59.964 61.111 0.00 0.00 37.49 2.40
309 310 0.179067 TGGTTTCCTTCTGCGACGTT 60.179 50.000 0.00 0.00 0.00 3.99
369 370 1.590238 GCATCGACGACATCTGAAAGG 59.410 52.381 0.00 0.00 0.00 3.11
373 374 1.992667 GTTTGCATCGACGACATCTGA 59.007 47.619 0.00 0.00 0.00 3.27
437 438 0.600255 CGGTGTTTTCTCCAGCGTCT 60.600 55.000 4.05 0.00 45.74 4.18
471 472 0.320374 GGTGGACCTGTGTCATCGAA 59.680 55.000 0.00 0.00 43.65 3.71
472 473 0.830023 TGGTGGACCTGTGTCATCGA 60.830 55.000 0.00 0.00 43.65 3.59
476 477 1.744320 CTCGTGGTGGACCTGTGTCA 61.744 60.000 0.00 0.00 43.65 3.58
523 524 5.163457 GGATTTGGAAACCAGTCTGTTCAAA 60.163 40.000 0.00 0.00 33.81 2.69
747 752 2.196382 CTTCCAGCGTCGTCCTTCGA 62.196 60.000 0.00 0.00 46.83 3.71
801 808 4.785453 GTCCCTGGCGGCTGGAAG 62.785 72.222 32.43 18.55 0.00 3.46
831 838 3.197983 TGAGGGGAGGTGGTCATAATTT 58.802 45.455 0.00 0.00 0.00 1.82
832 839 2.858644 TGAGGGGAGGTGGTCATAATT 58.141 47.619 0.00 0.00 0.00 1.40
833 840 2.587060 TGAGGGGAGGTGGTCATAAT 57.413 50.000 0.00 0.00 0.00 1.28
834 841 2.352561 TTGAGGGGAGGTGGTCATAA 57.647 50.000 0.00 0.00 0.00 1.90
835 842 2.352561 TTTGAGGGGAGGTGGTCATA 57.647 50.000 0.00 0.00 0.00 2.15
836 843 1.455822 TTTTGAGGGGAGGTGGTCAT 58.544 50.000 0.00 0.00 0.00 3.06
837 844 1.227249 TTTTTGAGGGGAGGTGGTCA 58.773 50.000 0.00 0.00 0.00 4.02
917 927 5.008514 CGGAAATGAAAAATGGCAAAACCTT 59.991 36.000 0.00 0.00 40.22 3.50
968 978 5.031066 AGATTAGTGCCTGCCGTTTATTA 57.969 39.130 0.00 0.00 0.00 0.98
1284 1298 0.107831 GTGCCTGGTAGGTGTTGTCA 59.892 55.000 0.00 0.00 37.80 3.58
1332 1346 5.062183 GGAAAGAAACTGAAACAAGCAACAC 59.938 40.000 0.00 0.00 0.00 3.32
1408 1422 2.556459 CCGGATCTCGCCTCGATGT 61.556 63.158 0.00 0.00 34.61 3.06
1432 1446 1.671850 GGGTCAGATTGAAACGCTCGA 60.672 52.381 0.00 0.00 0.00 4.04
1484 1498 1.686566 CTGGACACACATGCTACGCG 61.687 60.000 3.53 3.53 0.00 6.01
1506 1520 2.493035 CCAAAGCCCCAAATCAACAAC 58.507 47.619 0.00 0.00 0.00 3.32
1509 1523 0.321564 GCCCAAAGCCCCAAATCAAC 60.322 55.000 0.00 0.00 34.35 3.18
1526 1540 2.902705 TACTGTAACCATGGATCGCC 57.097 50.000 21.47 1.68 0.00 5.54
1557 1571 7.945033 ACAAAAGGTTGTAAAATAGCACATG 57.055 32.000 0.00 0.00 46.33 3.21
1601 1617 2.947652 CAGGGATCATGAGCATTTCGTT 59.052 45.455 13.85 0.00 0.00 3.85
1645 1661 0.250901 GGCATTGACCTATCGGCCAT 60.251 55.000 2.24 0.00 38.42 4.40
1649 1665 0.469917 AGTGGGCATTGACCTATCGG 59.530 55.000 10.60 0.00 0.00 4.18
1650 1666 1.586422 CAGTGGGCATTGACCTATCG 58.414 55.000 10.60 0.00 0.00 2.92
1651 1667 1.312815 GCAGTGGGCATTGACCTATC 58.687 55.000 10.60 0.57 43.97 2.08
1652 1668 3.502164 GCAGTGGGCATTGACCTAT 57.498 52.632 10.60 0.00 43.97 2.57
1662 1678 4.082026 ACAGAAAATAAGATTGCAGTGGGC 60.082 41.667 0.00 0.00 45.13 5.36
1663 1679 5.047802 ACACAGAAAATAAGATTGCAGTGGG 60.048 40.000 0.00 0.00 0.00 4.61
1760 1776 1.002134 AGCCTGGGGACATTTGTCG 60.002 57.895 4.72 0.00 45.65 4.35
1916 2014 3.850122 AGAATTAGCAAAAGGTTCCGC 57.150 42.857 0.00 0.00 0.00 5.54
2056 2154 6.038985 CACCGATATACATATGAAGAGGCTG 58.961 44.000 10.38 3.33 0.00 4.85
2254 2352 3.195661 CCAATCGTAGCCTGTTTAGGTC 58.804 50.000 0.00 0.00 46.41 3.85
2255 2353 2.570302 ACCAATCGTAGCCTGTTTAGGT 59.430 45.455 0.00 0.00 46.41 3.08
2536 2642 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2537 2643 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
2538 2644 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
2539 2645 3.323403 GGGAGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
2540 2646 3.309296 GGGAGAGAGAGAGAGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
2541 2647 2.370189 GGGGAGAGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
2542 2648 2.408565 GGGGAGAGAGAGAGAGAGAGA 58.591 57.143 0.00 0.00 0.00 3.10
2543 2649 1.421646 GGGGGAGAGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
2544 2650 1.010793 AGGGGGAGAGAGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
2545 2651 1.421646 GAGGGGGAGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
2546 2652 1.010793 AGAGGGGGAGAGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
2547 2653 1.421646 GAGAGGGGGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
2548 2654 1.010793 AGAGAGGGGGAGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
2549 2655 1.421646 GAGAGAGGGGGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
2550 2656 1.518367 GAGAGAGGGGGAGAGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
2551 2657 0.478507 GGAGAGAGGGGGAGAGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
2552 2658 0.996762 GGGAGAGAGGGGGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
2553 2659 0.998945 AGGGAGAGAGGGGGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
2554 2660 0.996762 GAGGGAGAGAGGGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
2555 2661 0.998945 AGAGGGAGAGAGGGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
2556 2662 0.996762 GAGAGGGAGAGAGGGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
2557 2663 0.998945 AGAGAGGGAGAGAGGGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
2558 2664 0.996762 GAGAGAGGGAGAGAGGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
2559 2665 1.541672 GAGAGAGGGAGAGAGGGGG 59.458 68.421 0.00 0.00 0.00 5.40
2560 2666 1.541672 GGAGAGAGGGAGAGAGGGG 59.458 68.421 0.00 0.00 0.00 4.79
2561 2667 0.998945 AGGGAGAGAGGGAGAGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
2562 2668 0.478507 GAGGGAGAGAGGGAGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
2563 2669 1.221635 TGAGGGAGAGAGGGAGAGAG 58.778 60.000 0.00 0.00 0.00 3.20
2564 2670 1.919933 ATGAGGGAGAGAGGGAGAGA 58.080 55.000 0.00 0.00 0.00 3.10
2565 2671 3.893753 TTATGAGGGAGAGAGGGAGAG 57.106 52.381 0.00 0.00 0.00 3.20
2566 2672 4.841813 ATTTATGAGGGAGAGAGGGAGA 57.158 45.455 0.00 0.00 0.00 3.71
2567 2673 7.566658 AATTATTTATGAGGGAGAGAGGGAG 57.433 40.000 0.00 0.00 0.00 4.30
2568 2674 7.796637 AGAAATTATTTATGAGGGAGAGAGGGA 59.203 37.037 0.00 0.00 0.00 4.20
2569 2675 7.983363 AGAAATTATTTATGAGGGAGAGAGGG 58.017 38.462 0.00 0.00 0.00 4.30
2570 2676 9.500785 GAAGAAATTATTTATGAGGGAGAGAGG 57.499 37.037 0.00 0.00 0.00 3.69
2681 2790 5.176958 CCACTTCGACGTGTTTAAGAAAGAT 59.823 40.000 19.32 0.00 33.07 2.40
2884 2993 5.481473 ACTGCAAATTTTGGTACATCAGGAT 59.519 36.000 10.96 0.00 39.30 3.24
2888 2997 6.403866 AGAACTGCAAATTTTGGTACATCA 57.596 33.333 10.96 0.00 39.30 3.07
3048 3159 5.818857 AGTTTGCTTAAAGAACCGACAAGTA 59.181 36.000 0.00 0.00 0.00 2.24
3077 3189 6.575201 GCGTCTGAAACTCTGAATAAAACAAG 59.425 38.462 0.00 0.00 0.00 3.16
3103 3217 7.559590 AATTGAGGTTCTGAGCATATGTAAC 57.440 36.000 4.29 2.29 0.00 2.50
3105 3219 7.828717 TGAAAATTGAGGTTCTGAGCATATGTA 59.171 33.333 4.29 0.00 0.00 2.29
3107 3221 7.092137 TGAAAATTGAGGTTCTGAGCATATG 57.908 36.000 0.00 0.00 0.00 1.78
3113 3255 4.381292 GGCCATGAAAATTGAGGTTCTGAG 60.381 45.833 0.00 0.00 0.00 3.35
3192 3334 1.608717 ATCCCTCAGTGAGACGGTGC 61.609 60.000 22.09 0.00 0.00 5.01
3276 3731 1.335872 GGACAAATTCAACGCCCACAG 60.336 52.381 0.00 0.00 0.00 3.66
4034 4489 0.544697 ACTCAACCGGGTGTCAAGTT 59.455 50.000 21.31 0.00 0.00 2.66
4043 4498 3.380142 CAACAAATCAAACTCAACCGGG 58.620 45.455 6.32 0.00 0.00 5.73
4164 4619 5.228665 TGTTTACGTGTTACATCCGAATCA 58.771 37.500 0.00 0.00 0.00 2.57
4228 4683 7.333323 AGGAAATCCAAAATCATTGGTGATTC 58.667 34.615 7.07 9.36 44.95 2.52
4456 4911 7.148590 CCAACATGAAGCCAGCTTTTATTAAAC 60.149 37.037 6.31 0.00 36.26 2.01
4534 4989 5.620206 AGTAATGTCATGTGACCAGTTCAA 58.380 37.500 10.40 0.00 44.15 2.69
5170 5657 1.392589 ACCACAAACCAAGCACTCTG 58.607 50.000 0.00 0.00 0.00 3.35
5185 5672 5.634859 GTGAATTTCATGTGATTGGAACCAC 59.365 40.000 1.78 0.00 0.00 4.16
5200 5687 1.600023 AACGGAAGGCGTGAATTTCA 58.400 45.000 0.00 0.00 0.00 2.69
5201 5688 4.095610 CAATAACGGAAGGCGTGAATTTC 58.904 43.478 0.00 0.00 0.00 2.17
5202 5689 3.754323 TCAATAACGGAAGGCGTGAATTT 59.246 39.130 0.00 0.00 0.00 1.82
5210 5722 4.412207 GACAATTGTCAATAACGGAAGGC 58.588 43.478 29.43 1.35 44.18 4.35
5240 5757 3.666902 CGCAGGTGTAGCAATTGTTGTAC 60.667 47.826 7.40 7.43 0.00 2.90
5326 5968 2.965147 GCACGAAGCAATCACGCCA 61.965 57.895 0.00 0.00 44.79 5.69
5347 5989 1.621814 GACCCTACTAAGTGCCACACA 59.378 52.381 0.00 0.00 36.74 3.72
5360 6004 8.818622 AGTTTCCATAAAATTTAGGACCCTAC 57.181 34.615 0.00 4.34 0.00 3.18
5381 6025 4.578928 CCACACCAGCTTGTAAGTTAGTTT 59.421 41.667 0.00 0.00 0.00 2.66
5436 6080 2.906169 ATCCCTCTCCCTCCTGAATT 57.094 50.000 0.00 0.00 0.00 2.17
5452 6096 5.992217 CCTGAGCAACTATAACCAGTAATCC 59.008 44.000 0.00 0.00 0.00 3.01
5504 6148 6.632834 CGGACATTTTGAGTTTAGTGTTCAAG 59.367 38.462 0.00 0.00 32.92 3.02
5513 6157 6.687081 AACAGAACGGACATTTTGAGTTTA 57.313 33.333 0.00 0.00 0.00 2.01
5588 6232 2.419436 CGGTACCACCATAGATGCAACA 60.419 50.000 13.54 0.00 38.47 3.33
5624 6271 2.501723 ACCAACCTCGATTGTAGATGCT 59.498 45.455 0.00 0.00 0.00 3.79
5625 6272 2.609459 CACCAACCTCGATTGTAGATGC 59.391 50.000 0.00 0.00 0.00 3.91
5681 6328 3.193479 GGAAGTTTAAGGATTGCCTGGTG 59.807 47.826 0.00 0.00 46.28 4.17
5695 6342 5.160607 ACGGATGTGAATGAGGAAGTTTA 57.839 39.130 0.00 0.00 0.00 2.01
5744 6391 4.952262 TCAAGCTGCATGTTTATGTCTC 57.048 40.909 1.02 0.00 36.65 3.36
5772 6419 3.118445 TGCCGGTTTGATGATCTACATGA 60.118 43.478 1.90 0.00 39.56 3.07
5814 6461 1.664643 CTTTTGCGGTCGAAATGCGC 61.665 55.000 0.00 0.00 40.61 6.09
5815 6462 0.110419 TCTTTTGCGGTCGAAATGCG 60.110 50.000 0.00 0.00 42.69 4.73
5822 6469 0.871722 TTGGTGATCTTTTGCGGTCG 59.128 50.000 0.00 0.00 0.00 4.79
5825 6472 0.109781 CCGTTGGTGATCTTTTGCGG 60.110 55.000 0.00 0.00 0.00 5.69
5829 6476 3.009033 TGGAGATCCGTTGGTGATCTTTT 59.991 43.478 4.43 0.00 46.80 2.27
5843 6490 0.035439 TGGCGGTCTTTTGGAGATCC 60.035 55.000 0.00 0.00 36.61 3.36
5876 6523 8.011067 AGTAATTAGTTTAAACTTGTCCGTCG 57.989 34.615 25.07 0.00 40.37 5.12
5925 6581 0.179000 AGTGGTGAATCTCCGGCATC 59.821 55.000 0.00 0.00 0.00 3.91
5926 6582 0.620556 AAGTGGTGAATCTCCGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
5927 6583 0.036388 GAAGTGGTGAATCTCCGGCA 60.036 55.000 0.00 0.00 0.00 5.69
5928 6584 0.744771 GGAAGTGGTGAATCTCCGGC 60.745 60.000 0.00 0.00 0.00 6.13
5929 6585 0.905357 AGGAAGTGGTGAATCTCCGG 59.095 55.000 0.00 0.00 0.00 5.14
5930 6586 2.350522 CAAGGAAGTGGTGAATCTCCG 58.649 52.381 0.00 0.00 0.00 4.63
5931 6587 2.087646 GCAAGGAAGTGGTGAATCTCC 58.912 52.381 0.00 0.00 0.00 3.71
5972 6628 0.457443 CTCCTACAGCAGCATCGTCA 59.543 55.000 0.00 0.00 0.00 4.35
5974 6630 0.898320 AACTCCTACAGCAGCATCGT 59.102 50.000 0.00 0.00 0.00 3.73
5975 6631 1.134995 TGAACTCCTACAGCAGCATCG 60.135 52.381 0.00 0.00 0.00 3.84
5977 6633 1.404717 CGTGAACTCCTACAGCAGCAT 60.405 52.381 0.00 0.00 0.00 3.79
5978 6634 0.038251 CGTGAACTCCTACAGCAGCA 60.038 55.000 0.00 0.00 0.00 4.41
5993 6649 1.906824 GACCCACCTCCTGTCGTGA 60.907 63.158 0.00 0.00 31.36 4.35
6002 6658 1.077429 GGCTCCAATGACCCACCTC 60.077 63.158 0.00 0.00 0.00 3.85
6014 6670 3.599584 CCGACTCTAACGGCTCCA 58.400 61.111 0.00 0.00 43.74 3.86
6020 6676 1.427020 GACGACCCCGACTCTAACG 59.573 63.158 0.00 0.00 39.50 3.18
6023 6679 2.124983 CCGACGACCCCGACTCTA 60.125 66.667 0.00 0.00 39.50 2.43
6024 6680 3.557903 TTCCGACGACCCCGACTCT 62.558 63.158 0.00 0.00 39.50 3.24
6030 6686 1.511768 CTCTTCTTCCGACGACCCC 59.488 63.158 0.00 0.00 0.00 4.95
6032 6688 0.886563 TTCCTCTTCTTCCGACGACC 59.113 55.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.