Multiple sequence alignment - TraesCS2B01G261100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G261100 chr2B 100.000 1762 0 0 1 1762 331248472 331246711 0.000000e+00 3254.0
1 TraesCS2B01G261100 chr2B 100.000 1510 0 0 2291 3800 331246182 331244673 0.000000e+00 2789.0
2 TraesCS2B01G261100 chr2B 82.491 554 92 4 242 793 753948467 753947917 7.380000e-132 481.0
3 TraesCS2B01G261100 chr2B 98.256 172 3 0 2821 2992 23589261 23589090 6.170000e-78 302.0
4 TraesCS2B01G261100 chr2B 97.159 176 5 0 2822 2997 198759393 198759568 7.980000e-77 298.0
5 TraesCS2B01G261100 chr2A 95.833 864 22 4 905 1762 324287646 324288501 0.000000e+00 1384.0
6 TraesCS2B01G261100 chr2A 97.765 537 11 1 2291 2827 324288532 324289067 0.000000e+00 924.0
7 TraesCS2B01G261100 chr2A 95.986 573 15 2 3232 3797 324289263 324289834 0.000000e+00 924.0
8 TraesCS2B01G261100 chr2A 97.688 173 4 0 2825 2997 13019760 13019588 7.980000e-77 298.0
9 TraesCS2B01G261100 chr2A 93.500 200 13 0 2988 3187 324289065 324289264 7.980000e-77 298.0
10 TraesCS2B01G261100 chr2A 97.727 44 1 0 3193 3236 772834736 772834779 4.070000e-10 76.8
11 TraesCS2B01G261100 chr2D 95.981 846 18 5 926 1762 218387083 218386245 0.000000e+00 1360.0
12 TraesCS2B01G261100 chr2D 97.952 537 9 2 2291 2827 218386214 218385680 0.000000e+00 929.0
13 TraesCS2B01G261100 chr2D 92.875 393 5 4 3415 3800 218379716 218379340 2.000000e-152 549.0
14 TraesCS2B01G261100 chr2D 95.545 202 9 0 3219 3420 218385403 218385202 1.320000e-84 324.0
15 TraesCS2B01G261100 chr2D 94.554 202 10 1 2988 3189 218385682 218385482 1.030000e-80 311.0
16 TraesCS2B01G261100 chr2D 97.727 44 1 0 3193 3236 647554761 647554718 4.070000e-10 76.8
17 TraesCS2B01G261100 chr7D 85.366 861 116 6 1 860 58052150 58053001 0.000000e+00 883.0
18 TraesCS2B01G261100 chr7D 95.455 44 2 0 3193 3236 109470033 109469990 1.890000e-08 71.3
19 TraesCS2B01G261100 chr7D 88.889 54 6 0 3193 3246 381354176 381354123 2.450000e-07 67.6
20 TraesCS2B01G261100 chr1B 83.333 864 135 9 1 860 332071490 332072348 0.000000e+00 789.0
21 TraesCS2B01G261100 chr5D 83.377 764 114 9 107 860 527430642 527429882 0.000000e+00 695.0
22 TraesCS2B01G261100 chr7A 85.613 563 79 2 224 785 13113421 13112860 1.180000e-164 590.0
23 TraesCS2B01G261100 chr5B 82.036 668 108 9 198 861 67672822 67673481 3.320000e-155 558.0
24 TraesCS2B01G261100 chr5B 97.143 175 5 0 2823 2997 531387143 531386969 2.870000e-76 296.0
25 TraesCS2B01G261100 chr3B 97.753 178 4 0 2822 2999 246303847 246304024 1.330000e-79 307.0
26 TraesCS2B01G261100 chr3B 99.405 168 1 0 2822 2989 637665201 637665034 4.770000e-79 305.0
27 TraesCS2B01G261100 chr3B 97.701 174 4 0 2818 2991 245979174 245979347 2.220000e-77 300.0
28 TraesCS2B01G261100 chr3B 84.810 79 6 6 3159 3234 27165013 27164938 1.460000e-09 75.0
29 TraesCS2B01G261100 chr7B 99.401 167 1 0 2824 2990 534818741 534818575 1.720000e-78 303.0
30 TraesCS2B01G261100 chr7B 89.474 57 3 3 3177 3233 523376757 523376704 6.810000e-08 69.4
31 TraesCS2B01G261100 chr7B 89.474 57 3 3 3177 3233 523505586 523505533 6.810000e-08 69.4
32 TraesCS2B01G261100 chr4B 98.810 168 2 0 2822 2989 671653919 671654086 2.220000e-77 300.0
33 TraesCS2B01G261100 chr5A 93.617 47 3 0 3195 3241 448622048 448622002 1.890000e-08 71.3
34 TraesCS2B01G261100 chr5A 100.000 28 0 0 3385 3412 481917683 481917656 7.000000e-03 52.8
35 TraesCS2B01G261100 chr4A 84.000 75 10 2 3348 3422 578766371 578766299 1.890000e-08 71.3
36 TraesCS2B01G261100 chr6B 89.091 55 4 2 3193 3246 157021891 157021944 2.450000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G261100 chr2B 331244673 331248472 3799 True 3021.5 3254 100.000 1 3800 2 chr2B.!!$R3 3799
1 TraesCS2B01G261100 chr2B 753947917 753948467 550 True 481.0 481 82.491 242 793 1 chr2B.!!$R2 551
2 TraesCS2B01G261100 chr2A 324287646 324289834 2188 False 882.5 1384 95.771 905 3797 4 chr2A.!!$F2 2892
3 TraesCS2B01G261100 chr2D 218385202 218387083 1881 True 731.0 1360 96.008 926 3420 4 chr2D.!!$R3 2494
4 TraesCS2B01G261100 chr7D 58052150 58053001 851 False 883.0 883 85.366 1 860 1 chr7D.!!$F1 859
5 TraesCS2B01G261100 chr1B 332071490 332072348 858 False 789.0 789 83.333 1 860 1 chr1B.!!$F1 859
6 TraesCS2B01G261100 chr5D 527429882 527430642 760 True 695.0 695 83.377 107 860 1 chr5D.!!$R1 753
7 TraesCS2B01G261100 chr7A 13112860 13113421 561 True 590.0 590 85.613 224 785 1 chr7A.!!$R1 561
8 TraesCS2B01G261100 chr5B 67672822 67673481 659 False 558.0 558 82.036 198 861 1 chr5B.!!$F1 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.030908 CAACGAGACGATAGCTCCCC 59.969 60.0 0.00 0.0 42.67 4.81 F
189 190 0.033504 AATACACGGCCCGCTCTATG 59.966 55.0 1.23 0.0 0.00 2.23 F
886 897 0.109723 TTAGGACCGTGCAAGCCTTT 59.890 50.0 4.32 0.0 32.04 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1646 1660 0.029300 GACGCTTCAAGTGCTGCAAA 59.971 50.0 2.77 0.00 0.00 3.68 R
2404 2424 5.531287 ACATCCGTTGTCTAAGAAGCTTTTT 59.469 36.0 7.46 7.46 30.89 1.94 R
2974 2994 0.535797 CCTTGTACTCCCTCCGTTCC 59.464 60.0 0.00 0.00 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.972505 CGCACGGTCCAACAAGCT 60.973 61.111 0.00 0.00 0.00 3.74
33 34 4.640771 ACAAGCTTTGGAGGATAACAGA 57.359 40.909 0.00 0.00 34.12 3.41
72 73 0.107945 GAGACCTCACCATCACAGGC 60.108 60.000 0.00 0.00 0.00 4.85
78 79 2.158564 CCTCACCATCACAGGCCATATT 60.159 50.000 5.01 0.00 0.00 1.28
81 82 2.882761 CACCATCACAGGCCATATTCAG 59.117 50.000 5.01 0.00 0.00 3.02
87 88 3.118261 TCACAGGCCATATTCAGTTCCTC 60.118 47.826 5.01 0.00 0.00 3.71
96 97 6.595682 CCATATTCAGTTCCTCAACCTATGT 58.404 40.000 0.00 0.00 32.22 2.29
97 98 7.689313 GCCATATTCAGTTCCTCAACCTATGTA 60.689 40.741 0.00 0.00 32.22 2.29
105 106 5.387113 TCCTCAACCTATGTAATGCCATT 57.613 39.130 0.00 0.00 0.00 3.16
111 112 5.310409 ACCTATGTAATGCCATTGCTACT 57.690 39.130 7.05 0.00 38.71 2.57
117 118 5.249420 TGTAATGCCATTGCTACTACACAA 58.751 37.500 7.05 0.00 38.71 3.33
123 124 3.612860 CCATTGCTACTACACAACGAGAC 59.387 47.826 0.00 0.00 0.00 3.36
134 135 0.030908 CAACGAGACGATAGCTCCCC 59.969 60.000 0.00 0.00 42.67 4.81
135 136 0.395311 AACGAGACGATAGCTCCCCA 60.395 55.000 0.00 0.00 42.67 4.96
137 138 1.519751 CGAGACGATAGCTCCCCAGG 61.520 65.000 0.00 0.00 42.67 4.45
140 141 1.217183 AGACGATAGCTCCCCAGGTAA 59.783 52.381 0.00 0.00 36.20 2.85
147 148 1.077005 AGCTCCCCAGGTAAATTTGCA 59.923 47.619 8.59 0.00 0.00 4.08
156 157 0.175531 GTAAATTTGCATGGCCGGCT 59.824 50.000 28.56 3.74 0.00 5.52
165 166 3.052909 ATGGCCGGCTGATGCTTCT 62.053 57.895 28.56 0.00 39.59 2.85
183 184 3.199891 GGACAATACACGGCCCGC 61.200 66.667 1.23 0.00 0.00 6.13
189 190 0.033504 AATACACGGCCCGCTCTATG 59.966 55.000 1.23 0.00 0.00 2.23
222 223 2.801077 GCCAAGGGCTAGAAAGGTTA 57.199 50.000 0.00 0.00 46.69 2.85
228 229 4.297427 AGGGCTAGAAAGGTTACCCTAT 57.703 45.455 0.00 0.00 45.93 2.57
234 235 5.396436 GCTAGAAAGGTTACCCTATGCTTCA 60.396 44.000 0.00 0.00 41.56 3.02
324 333 0.806492 GGACTTCGGATCAACGAGCC 60.806 60.000 0.00 0.00 44.47 4.70
348 357 4.875536 CGACATGGATTACAAGATCAACCA 59.124 41.667 0.00 0.00 0.00 3.67
360 369 1.818674 GATCAACCATCGGCCTGTTTT 59.181 47.619 0.00 0.00 0.00 2.43
363 372 1.201414 CAACCATCGGCCTGTTTTACC 59.799 52.381 0.00 0.00 0.00 2.85
367 376 1.024579 ATCGGCCTGTTTTACCTGCG 61.025 55.000 0.00 0.00 0.00 5.18
387 396 1.881973 GTGCAAGAGGAAGACAATGCA 59.118 47.619 0.00 0.00 41.08 3.96
402 411 5.474532 AGACAATGCAGAACACATACACATT 59.525 36.000 0.00 0.00 0.00 2.71
408 417 5.241285 TGCAGAACACATACACATTCAATGT 59.759 36.000 0.00 0.00 46.22 2.71
409 418 6.429385 TGCAGAACACATACACATTCAATGTA 59.571 34.615 1.72 0.00 42.70 2.29
417 426 4.875544 ACACATTCAATGTACATACGCC 57.124 40.909 9.21 0.00 42.70 5.68
419 428 4.697828 ACACATTCAATGTACATACGCCAA 59.302 37.500 9.21 0.00 42.70 4.52
468 477 1.005924 CTAAACTTGGAGGTGCCCCAT 59.994 52.381 0.00 0.00 34.97 4.00
509 518 0.400213 TTGGACTGGTGGCTACAAGG 59.600 55.000 9.70 0.00 31.71 3.61
519 528 3.261137 GGTGGCTACAAGGTAGAAGAAGT 59.739 47.826 1.52 0.00 0.00 3.01
522 531 5.763698 GTGGCTACAAGGTAGAAGAAGTTTT 59.236 40.000 7.55 0.00 0.00 2.43
530 539 6.152932 AGGTAGAAGAAGTTTTACACGTGA 57.847 37.500 25.01 2.68 0.00 4.35
543 552 1.873591 ACACGTGATGACAAAAGAGGC 59.126 47.619 25.01 0.00 0.00 4.70
579 588 2.980233 GCAGTGGCTTGGTCGCTT 60.980 61.111 0.00 0.00 36.96 4.68
586 595 1.581447 GCTTGGTCGCTTTGGAAGG 59.419 57.895 0.00 0.00 0.00 3.46
594 603 3.304726 GGTCGCTTTGGAAGGAAAGAAAG 60.305 47.826 0.00 0.00 35.30 2.62
610 619 1.886542 GAAAGGCGAGGGTGTTCAATT 59.113 47.619 0.00 0.00 0.00 2.32
611 620 1.995376 AAGGCGAGGGTGTTCAATTT 58.005 45.000 0.00 0.00 0.00 1.82
613 622 1.202879 AGGCGAGGGTGTTCAATTTGA 60.203 47.619 0.00 0.00 0.00 2.69
621 630 6.468956 CGAGGGTGTTCAATTTGAATAAATCG 59.531 38.462 14.54 15.77 38.79 3.34
672 682 5.526479 CCACATCATGAACGAGATCAAAGAT 59.474 40.000 0.00 0.00 31.99 2.40
704 714 5.012354 AGACCGAATTAGGTGTTGGAGTTTA 59.988 40.000 15.63 0.00 46.09 2.01
706 716 6.063404 ACCGAATTAGGTGTTGGAGTTTAAA 58.937 36.000 9.71 0.00 44.07 1.52
717 727 6.145858 GTGTTGGAGTTTAAAACCGTTTTGTT 59.854 34.615 17.73 2.55 34.19 2.83
739 749 6.720288 TGTTAGAGAGTAGGCTTTTGAGTAGT 59.280 38.462 0.00 0.00 0.00 2.73
793 803 0.867746 TGTTCGCATCACTCACAAGC 59.132 50.000 0.00 0.00 0.00 4.01
816 827 7.885297 AGCTCTTGTGTAATTAAATTTCTGCA 58.115 30.769 0.00 0.00 0.00 4.41
833 844 8.652810 ATTTCTGCATTCTATAAAAATGTGGC 57.347 30.769 8.52 0.00 36.65 5.01
848 859 1.078778 TGGCACGCCATTGACGTAT 60.079 52.632 6.67 0.00 42.96 3.06
849 860 1.087202 TGGCACGCCATTGACGTATC 61.087 55.000 6.67 0.00 42.96 2.24
878 889 5.372547 AAAAGAAAGAATTAGGACCGTGC 57.627 39.130 0.00 0.00 0.00 5.34
879 890 3.695830 AGAAAGAATTAGGACCGTGCA 57.304 42.857 0.00 0.00 0.00 4.57
880 891 4.015872 AGAAAGAATTAGGACCGTGCAA 57.984 40.909 0.00 0.00 0.00 4.08
881 892 4.003648 AGAAAGAATTAGGACCGTGCAAG 58.996 43.478 0.00 0.00 0.00 4.01
882 893 1.739067 AGAATTAGGACCGTGCAAGC 58.261 50.000 0.00 0.00 0.00 4.01
883 894 0.733150 GAATTAGGACCGTGCAAGCC 59.267 55.000 0.00 0.00 0.00 4.35
884 895 0.328258 AATTAGGACCGTGCAAGCCT 59.672 50.000 4.42 4.42 34.56 4.58
885 896 0.328258 ATTAGGACCGTGCAAGCCTT 59.672 50.000 4.32 0.00 32.04 4.35
886 897 0.109723 TTAGGACCGTGCAAGCCTTT 59.890 50.000 4.32 0.00 32.04 3.11
887 898 0.109723 TAGGACCGTGCAAGCCTTTT 59.890 50.000 4.32 0.00 32.04 2.27
888 899 0.755327 AGGACCGTGCAAGCCTTTTT 60.755 50.000 0.00 0.00 0.00 1.94
889 900 0.955905 GGACCGTGCAAGCCTTTTTA 59.044 50.000 0.00 0.00 0.00 1.52
890 901 1.544246 GGACCGTGCAAGCCTTTTTAT 59.456 47.619 0.00 0.00 0.00 1.40
891 902 2.595386 GACCGTGCAAGCCTTTTTATG 58.405 47.619 0.00 0.00 0.00 1.90
892 903 2.227865 GACCGTGCAAGCCTTTTTATGA 59.772 45.455 0.00 0.00 0.00 2.15
893 904 2.625790 ACCGTGCAAGCCTTTTTATGAA 59.374 40.909 0.00 0.00 0.00 2.57
894 905 3.068873 ACCGTGCAAGCCTTTTTATGAAA 59.931 39.130 0.00 0.00 0.00 2.69
895 906 4.054671 CCGTGCAAGCCTTTTTATGAAAA 58.945 39.130 0.00 0.00 33.86 2.29
896 907 4.509600 CCGTGCAAGCCTTTTTATGAAAAA 59.490 37.500 0.00 0.00 37.99 1.94
934 945 1.153369 GCATTCCTGCTGCCGTCTA 60.153 57.895 0.00 0.00 45.32 2.59
1029 1040 4.760047 GCCGCCTCCTCGCTCAAA 62.760 66.667 0.00 0.00 0.00 2.69
1073 1084 0.622665 CAAGAGGATCCCTTGCCAGT 59.377 55.000 22.29 0.00 35.23 4.00
1087 1098 1.835927 GCCAGTGCACTTCTCCTCCT 61.836 60.000 18.94 0.00 37.47 3.69
1271 1282 1.339929 AGCCGCGAAATTTCCAAGTTT 59.660 42.857 8.23 0.00 0.00 2.66
1385 1396 2.035442 GGAGTGCTTGGGCGAAGTC 61.035 63.158 11.00 4.23 42.25 3.01
1416 1427 1.930204 TCCAGGAGTCAGGTGAGGATA 59.070 52.381 0.00 0.00 0.00 2.59
1420 1431 4.164988 CCAGGAGTCAGGTGAGGATATTTT 59.835 45.833 0.00 0.00 0.00 1.82
1535 1549 9.209175 CTTATGTAACTGGGACTATAGCATTTC 57.791 37.037 0.00 0.00 0.00 2.17
1539 1553 6.763715 AACTGGGACTATAGCATTTCCATA 57.236 37.500 8.85 0.00 0.00 2.74
1540 1554 6.763715 ACTGGGACTATAGCATTTCCATAA 57.236 37.500 8.85 0.00 0.00 1.90
1744 1758 3.818787 GTCTTCCGCTCCGCCGTA 61.819 66.667 0.00 0.00 0.00 4.02
2404 2424 2.302733 TGTTGCAGTTCCATAGAGCAGA 59.697 45.455 0.00 0.00 36.47 4.26
2608 2628 8.726988 TGTATCCTTTTGTTAGTTGCTGATAAC 58.273 33.333 0.00 0.00 33.42 1.89
2646 2666 3.619483 CGTGTTGTACAACTGGTGAAAGA 59.381 43.478 32.58 11.97 41.67 2.52
2780 2800 5.164620 TCACTAGATTTGGCTGTTGATCA 57.835 39.130 0.00 0.00 0.00 2.92
2809 2829 2.102420 CACCTCCCGTAGTTCATGCATA 59.898 50.000 0.00 0.00 0.00 3.14
2824 2844 6.907853 TCATGCATACTATCAGTAGCTTCT 57.092 37.500 0.00 0.00 33.66 2.85
2825 2845 8.300286 GTTCATGCATACTATCAGTAGCTTCTA 58.700 37.037 0.00 0.00 33.66 2.10
2826 2846 7.821652 TCATGCATACTATCAGTAGCTTCTAC 58.178 38.462 0.00 0.00 33.66 2.59
2827 2847 7.667635 TCATGCATACTATCAGTAGCTTCTACT 59.332 37.037 0.00 0.94 33.66 2.57
2828 2848 7.441890 TGCATACTATCAGTAGCTTCTACTC 57.558 40.000 3.70 0.00 33.66 2.59
2829 2849 6.431543 TGCATACTATCAGTAGCTTCTACTCC 59.568 42.308 3.70 0.00 33.66 3.85
2830 2850 6.127842 GCATACTATCAGTAGCTTCTACTCCC 60.128 46.154 3.70 0.00 33.66 4.30
2831 2851 5.656549 ACTATCAGTAGCTTCTACTCCCT 57.343 43.478 3.70 0.00 0.00 4.20
2832 2852 5.627135 ACTATCAGTAGCTTCTACTCCCTC 58.373 45.833 3.70 0.00 0.00 4.30
2833 2853 3.300239 TCAGTAGCTTCTACTCCCTCC 57.700 52.381 3.70 0.00 0.00 4.30
2834 2854 1.950909 CAGTAGCTTCTACTCCCTCCG 59.049 57.143 3.70 0.00 0.00 4.63
2835 2855 1.565288 AGTAGCTTCTACTCCCTCCGT 59.435 52.381 0.00 0.00 0.00 4.69
2836 2856 2.025131 AGTAGCTTCTACTCCCTCCGTT 60.025 50.000 0.00 0.00 0.00 4.44
2837 2857 1.476477 AGCTTCTACTCCCTCCGTTC 58.524 55.000 0.00 0.00 0.00 3.95
2838 2858 0.460722 GCTTCTACTCCCTCCGTTCC 59.539 60.000 0.00 0.00 0.00 3.62
2839 2859 1.112950 CTTCTACTCCCTCCGTTCCC 58.887 60.000 0.00 0.00 0.00 3.97
2840 2860 0.410663 TTCTACTCCCTCCGTTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
2841 2861 0.410663 TCTACTCCCTCCGTTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
2842 2862 1.203212 TCTACTCCCTCCGTTCCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
2843 2863 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
2844 2864 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2845 2865 2.271777 ACTCCCTCCGTTCCCAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2846 2866 2.850568 ACTCCCTCCGTTCCCAAATAAT 59.149 45.455 0.00 0.00 0.00 1.28
2847 2867 3.268595 ACTCCCTCCGTTCCCAAATAATT 59.731 43.478 0.00 0.00 0.00 1.40
2848 2868 3.626930 TCCCTCCGTTCCCAAATAATTG 58.373 45.455 0.00 0.00 36.25 2.32
2849 2869 3.010808 TCCCTCCGTTCCCAAATAATTGT 59.989 43.478 0.00 0.00 34.60 2.71
2850 2870 3.380320 CCCTCCGTTCCCAAATAATTGTC 59.620 47.826 0.00 0.00 34.60 3.18
2851 2871 4.270008 CCTCCGTTCCCAAATAATTGTCT 58.730 43.478 0.00 0.00 34.60 3.41
2852 2872 4.705023 CCTCCGTTCCCAAATAATTGTCTT 59.295 41.667 0.00 0.00 34.60 3.01
2853 2873 5.185056 CCTCCGTTCCCAAATAATTGTCTTT 59.815 40.000 0.00 0.00 34.60 2.52
2854 2874 6.262193 TCCGTTCCCAAATAATTGTCTTTC 57.738 37.500 0.00 0.00 34.60 2.62
2855 2875 6.007703 TCCGTTCCCAAATAATTGTCTTTCT 58.992 36.000 0.00 0.00 34.60 2.52
2856 2876 7.169591 TCCGTTCCCAAATAATTGTCTTTCTA 58.830 34.615 0.00 0.00 34.60 2.10
2857 2877 7.335924 TCCGTTCCCAAATAATTGTCTTTCTAG 59.664 37.037 0.00 0.00 34.60 2.43
2858 2878 6.967199 CGTTCCCAAATAATTGTCTTTCTAGC 59.033 38.462 0.00 0.00 34.60 3.42
2859 2879 7.258441 GTTCCCAAATAATTGTCTTTCTAGCC 58.742 38.462 0.00 0.00 34.60 3.93
2860 2880 6.489603 TCCCAAATAATTGTCTTTCTAGCCA 58.510 36.000 0.00 0.00 34.60 4.75
2861 2881 7.125391 TCCCAAATAATTGTCTTTCTAGCCAT 58.875 34.615 0.00 0.00 34.60 4.40
2862 2882 7.285401 TCCCAAATAATTGTCTTTCTAGCCATC 59.715 37.037 0.00 0.00 34.60 3.51
2863 2883 7.286316 CCCAAATAATTGTCTTTCTAGCCATCT 59.714 37.037 0.00 0.00 34.60 2.90
2864 2884 8.348507 CCAAATAATTGTCTTTCTAGCCATCTC 58.651 37.037 0.00 0.00 34.60 2.75
2865 2885 8.896744 CAAATAATTGTCTTTCTAGCCATCTCA 58.103 33.333 0.00 0.00 0.00 3.27
2866 2886 9.466497 AAATAATTGTCTTTCTAGCCATCTCAA 57.534 29.630 0.00 0.00 0.00 3.02
2867 2887 9.466497 AATAATTGTCTTTCTAGCCATCTCAAA 57.534 29.630 0.00 0.00 0.00 2.69
2868 2888 7.951347 AATTGTCTTTCTAGCCATCTCAAAT 57.049 32.000 0.00 0.00 0.00 2.32
2869 2889 6.748333 TTGTCTTTCTAGCCATCTCAAATG 57.252 37.500 0.00 0.00 0.00 2.32
2870 2890 6.053632 TGTCTTTCTAGCCATCTCAAATGA 57.946 37.500 0.00 0.00 0.00 2.57
2871 2891 6.475504 TGTCTTTCTAGCCATCTCAAATGAA 58.524 36.000 0.00 0.00 0.00 2.57
2872 2892 6.372659 TGTCTTTCTAGCCATCTCAAATGAAC 59.627 38.462 0.00 0.00 0.00 3.18
2873 2893 6.597280 GTCTTTCTAGCCATCTCAAATGAACT 59.403 38.462 0.00 0.00 0.00 3.01
2874 2894 7.766278 GTCTTTCTAGCCATCTCAAATGAACTA 59.234 37.037 0.00 0.00 0.00 2.24
2875 2895 7.766278 TCTTTCTAGCCATCTCAAATGAACTAC 59.234 37.037 0.00 0.00 0.00 2.73
2876 2896 6.544928 TCTAGCCATCTCAAATGAACTACA 57.455 37.500 0.00 0.00 0.00 2.74
2877 2897 6.946340 TCTAGCCATCTCAAATGAACTACAA 58.054 36.000 0.00 0.00 0.00 2.41
2878 2898 5.886960 AGCCATCTCAAATGAACTACAAC 57.113 39.130 0.00 0.00 0.00 3.32
2879 2899 5.316167 AGCCATCTCAAATGAACTACAACA 58.684 37.500 0.00 0.00 0.00 3.33
2880 2900 5.948162 AGCCATCTCAAATGAACTACAACAT 59.052 36.000 0.00 0.00 0.00 2.71
2881 2901 7.112122 AGCCATCTCAAATGAACTACAACATA 58.888 34.615 0.00 0.00 0.00 2.29
2882 2902 7.066284 AGCCATCTCAAATGAACTACAACATAC 59.934 37.037 0.00 0.00 0.00 2.39
2883 2903 7.401860 CCATCTCAAATGAACTACAACATACG 58.598 38.462 0.00 0.00 0.00 3.06
2884 2904 6.961359 TCTCAAATGAACTACAACATACGG 57.039 37.500 0.00 0.00 0.00 4.02
2885 2905 6.693466 TCTCAAATGAACTACAACATACGGA 58.307 36.000 0.00 0.00 0.00 4.69
2886 2906 7.327975 TCTCAAATGAACTACAACATACGGAT 58.672 34.615 0.00 0.00 0.00 4.18
2887 2907 7.277760 TCTCAAATGAACTACAACATACGGATG 59.722 37.037 5.94 5.94 39.16 3.51
2889 2909 8.035984 TCAAATGAACTACAACATACGGATGTA 58.964 33.333 15.10 0.00 45.93 2.29
2890 2910 8.826710 CAAATGAACTACAACATACGGATGTAT 58.173 33.333 15.10 8.21 45.93 2.29
2905 2925 9.692749 ATACGGATGTATGTAGACATGTTTTAG 57.307 33.333 0.00 0.00 40.18 1.85
2906 2926 7.778083 ACGGATGTATGTAGACATGTTTTAGA 58.222 34.615 0.00 0.00 40.18 2.10
2907 2927 7.921214 ACGGATGTATGTAGACATGTTTTAGAG 59.079 37.037 0.00 0.00 40.18 2.43
2908 2928 7.921214 CGGATGTATGTAGACATGTTTTAGAGT 59.079 37.037 0.00 0.00 40.18 3.24
2909 2929 9.035607 GGATGTATGTAGACATGTTTTAGAGTG 57.964 37.037 0.00 0.00 40.18 3.51
2910 2930 9.587772 GATGTATGTAGACATGTTTTAGAGTGT 57.412 33.333 0.00 0.00 40.18 3.55
2916 2936 9.856488 TGTAGACATGTTTTAGAGTGTAGATTC 57.144 33.333 0.00 0.00 0.00 2.52
2917 2937 9.856488 GTAGACATGTTTTAGAGTGTAGATTCA 57.144 33.333 0.00 0.00 0.00 2.57
2918 2938 8.764524 AGACATGTTTTAGAGTGTAGATTCAC 57.235 34.615 0.00 0.00 38.46 3.18
2929 2949 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2930 2950 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2931 2951 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2932 2952 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2933 2953 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2934 2954 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2935 2955 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2936 2956 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2937 2957 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2938 2958 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2939 2959 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2940 2960 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2941 2961 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2942 2962 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2943 2963 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2944 2964 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2945 2965 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2946 2966 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2947 2967 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2948 2968 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2949 2969 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
2950 2970 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2951 2971 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2952 2972 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
2953 2973 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
2954 2974 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
2955 2975 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
2956 2976 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2957 2977 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2958 2978 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2959 2979 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2960 2980 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2961 2981 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2962 2982 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2963 2983 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2964 2984 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2965 2985 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2966 2986 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2967 2987 9.566432 ACTTGTTGAAATCTCTAGAAAGACAAT 57.434 29.630 0.00 0.00 0.00 2.71
2980 3000 9.595823 TCTAGAAAGACAATTATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2981 3001 9.595823 CTAGAAAGACAATTATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2982 3002 8.494016 AGAAAGACAATTATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2983 3003 7.553044 AGAAAGACAATTATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2984 3004 5.681639 AGACAATTATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2985 3005 5.427481 AGACAATTATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2986 3006 5.681639 ACAATTATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3015 3035 6.716898 GGTAACTACCACTTACATGTGTTC 57.283 41.667 9.11 0.00 45.73 3.18
3194 3214 9.990360 TTGTGTGATTTAGTATCTACTTTGTGA 57.010 29.630 0.00 0.00 37.73 3.58
3195 3215 9.990360 TGTGTGATTTAGTATCTACTTTGTGAA 57.010 29.630 0.00 0.00 37.73 3.18
3205 3225 9.269453 AGTATCTACTTTGTGAACTAAAACCAC 57.731 33.333 0.00 0.00 31.13 4.16
3206 3226 6.592798 TCTACTTTGTGAACTAAAACCACG 57.407 37.500 0.00 0.00 33.78 4.94
3211 3231 5.666969 TTGTGAACTAAAACCACGATGAG 57.333 39.130 0.00 0.00 33.78 2.90
3213 3233 5.845103 TGTGAACTAAAACCACGATGAGTA 58.155 37.500 0.00 0.00 33.78 2.59
3216 3236 7.442969 TGTGAACTAAAACCACGATGAGTAAAT 59.557 33.333 0.00 0.00 33.78 1.40
3217 3237 7.955864 GTGAACTAAAACCACGATGAGTAAATC 59.044 37.037 0.00 0.00 0.00 2.17
3235 3304 2.893215 TCGGAACAGAGGGAGTAGAA 57.107 50.000 0.00 0.00 0.00 2.10
3236 3305 3.383698 TCGGAACAGAGGGAGTAGAAT 57.616 47.619 0.00 0.00 0.00 2.40
3341 3410 0.323957 AGAACGGCCTCCTTACCAAC 59.676 55.000 0.00 0.00 0.00 3.77
3459 3528 7.512058 AGATGGTTCTTATATGACCTCATGAGT 59.488 37.037 21.11 9.51 37.15 3.41
3561 3637 7.273381 GTGCAGTACTTATGGTTGCAAATTAAG 59.727 37.037 16.70 16.70 41.47 1.85
3626 3702 2.622942 GTCACATTTGAAGAGGCAACCA 59.377 45.455 0.00 0.00 31.90 3.67
3648 3724 6.183361 ACCAACTACTGTAAATCTGAAGTGGT 60.183 38.462 0.00 0.00 36.09 4.16
3683 3759 3.244249 CGGAGAAGTTTTCCTCTTCCACT 60.244 47.826 10.51 0.00 41.27 4.00
3692 3768 1.546029 TCCTCTTCCACTGACATGACG 59.454 52.381 0.00 0.00 0.00 4.35
3710 3786 4.714632 TGACGAAATTCTCCCAACTCTTT 58.285 39.130 0.00 0.00 0.00 2.52
3727 3803 7.862873 CCAACTCTTTGACTTTATTGTTCTTCC 59.137 37.037 0.00 0.00 34.24 3.46
3748 3824 7.775093 TCTTCCTTATGTGTATTTGGGATCAAG 59.225 37.037 0.00 0.00 33.98 3.02
3797 3873 7.836183 ACTATTTGCAACTCTTCCATCCTTTAT 59.164 33.333 0.00 0.00 0.00 1.40
3798 3874 6.515272 TTTGCAACTCTTCCATCCTTTATC 57.485 37.500 0.00 0.00 0.00 1.75
3799 3875 5.441718 TGCAACTCTTCCATCCTTTATCT 57.558 39.130 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.640771 TCTGTTATCCTCCAAAGCTTGT 57.359 40.909 0.00 0.00 0.00 3.16
18 19 3.202151 GGACCCATCTGTTATCCTCCAAA 59.798 47.826 0.00 0.00 0.00 3.28
33 34 0.990282 CCTCCACATCCTGGACCCAT 60.990 60.000 0.00 0.00 44.99 4.00
62 63 3.219176 ACTGAATATGGCCTGTGATGG 57.781 47.619 3.32 0.00 0.00 3.51
64 65 3.461085 AGGAACTGAATATGGCCTGTGAT 59.539 43.478 3.32 0.00 37.18 3.06
72 73 6.595682 ACATAGGTTGAGGAACTGAATATGG 58.404 40.000 0.00 0.00 41.55 2.74
78 79 5.428253 GCATTACATAGGTTGAGGAACTGA 58.572 41.667 0.00 0.00 41.55 3.41
81 82 4.523083 TGGCATTACATAGGTTGAGGAAC 58.477 43.478 0.00 0.00 0.00 3.62
87 88 4.924305 AGCAATGGCATTACATAGGTTG 57.076 40.909 13.23 0.00 44.61 3.77
96 97 4.331443 CGTTGTGTAGTAGCAATGGCATTA 59.669 41.667 13.23 0.00 44.61 1.90
97 98 3.126858 CGTTGTGTAGTAGCAATGGCATT 59.873 43.478 6.96 6.96 44.61 3.56
105 106 2.145536 TCGTCTCGTTGTGTAGTAGCA 58.854 47.619 0.00 0.00 0.00 3.49
111 112 2.353889 GGAGCTATCGTCTCGTTGTGTA 59.646 50.000 0.00 0.00 0.00 2.90
117 118 0.820074 CTGGGGAGCTATCGTCTCGT 60.820 60.000 0.00 0.00 0.00 4.18
123 124 3.771577 AATTTACCTGGGGAGCTATCG 57.228 47.619 0.00 0.00 0.00 2.92
134 135 1.471327 CCGGCCATGCAAATTTACCTG 60.471 52.381 2.24 0.00 0.00 4.00
135 136 0.823460 CCGGCCATGCAAATTTACCT 59.177 50.000 2.24 0.00 0.00 3.08
137 138 0.175531 AGCCGGCCATGCAAATTTAC 59.824 50.000 26.15 0.00 0.00 2.01
140 141 1.332144 ATCAGCCGGCCATGCAAATT 61.332 50.000 26.15 0.00 0.00 1.82
147 148 2.517875 GAAGCATCAGCCGGCCAT 60.518 61.111 26.15 13.44 43.56 4.40
156 157 3.261580 CGTGTATTGTCCAGAAGCATCA 58.738 45.455 0.00 0.00 0.00 3.07
165 166 2.266372 CGGGCCGTGTATTGTCCA 59.734 61.111 19.97 0.00 0.00 4.02
183 184 6.149129 TGGCATAGTCTGTTGTACATAGAG 57.851 41.667 9.81 3.95 0.00 2.43
189 190 3.270877 CCCTTGGCATAGTCTGTTGTAC 58.729 50.000 0.00 0.00 0.00 2.90
234 235 1.202976 GCCCAACTCCTCCATATGCAT 60.203 52.381 3.79 3.79 0.00 3.96
309 318 2.183300 CGGGCTCGTTGATCCGAA 59.817 61.111 0.00 0.00 44.69 4.30
324 333 4.273480 GGTTGATCTTGTAATCCATGTCGG 59.727 45.833 0.00 0.00 0.00 4.79
348 357 1.024579 CGCAGGTAAAACAGGCCGAT 61.025 55.000 0.00 0.00 0.00 4.18
360 369 0.037326 CTTCCTCTTGCACGCAGGTA 60.037 55.000 0.80 0.00 0.00 3.08
363 372 0.601046 TGTCTTCCTCTTGCACGCAG 60.601 55.000 0.00 0.00 0.00 5.18
367 376 1.881973 TGCATTGTCTTCCTCTTGCAC 59.118 47.619 0.00 0.00 35.36 4.57
387 396 7.977789 TGTACATTGAATGTGTATGTGTTCT 57.022 32.000 20.29 0.00 44.60 3.01
402 411 3.687212 CCTGTTTGGCGTATGTACATTGA 59.313 43.478 14.77 0.00 0.00 2.57
408 417 2.418692 CACACCTGTTTGGCGTATGTA 58.581 47.619 0.00 0.00 40.22 2.29
409 418 1.234821 CACACCTGTTTGGCGTATGT 58.765 50.000 0.00 0.00 40.22 2.29
417 426 0.817013 ACTTGTGCCACACCTGTTTG 59.183 50.000 0.00 0.00 32.73 2.93
419 428 1.666209 GCACTTGTGCCACACCTGTT 61.666 55.000 14.17 0.00 32.73 3.16
468 477 1.227943 GCTATCTTGCCCATGCGGA 60.228 57.895 4.56 0.00 41.78 5.54
489 498 1.004745 CCTTGTAGCCACCAGTCCAAT 59.995 52.381 0.00 0.00 0.00 3.16
509 518 7.168637 TGTCATCACGTGTAAAACTTCTTCTAC 59.831 37.037 16.51 0.00 0.00 2.59
519 528 5.504994 GCCTCTTTTGTCATCACGTGTAAAA 60.505 40.000 16.51 13.98 0.00 1.52
522 531 3.064207 GCCTCTTTTGTCATCACGTGTA 58.936 45.455 16.51 2.58 0.00 2.90
530 539 3.003689 CGTGTCAAAGCCTCTTTTGTCAT 59.996 43.478 2.76 0.00 38.00 3.06
543 552 3.958704 TGCAATTACCAACGTGTCAAAG 58.041 40.909 0.00 0.00 0.00 2.77
579 588 2.504367 CTCGCCTTTCTTTCCTTCCAA 58.496 47.619 0.00 0.00 0.00 3.53
586 595 1.535896 GAACACCCTCGCCTTTCTTTC 59.464 52.381 0.00 0.00 0.00 2.62
594 603 1.243902 TCAAATTGAACACCCTCGCC 58.756 50.000 0.00 0.00 0.00 5.54
610 619 9.834628 GTCCACAGTTTTTATCGATTTATTCAA 57.165 29.630 1.71 0.00 0.00 2.69
611 620 8.172484 CGTCCACAGTTTTTATCGATTTATTCA 58.828 33.333 1.71 0.00 0.00 2.57
613 622 8.259049 TCGTCCACAGTTTTTATCGATTTATT 57.741 30.769 1.71 0.00 0.00 1.40
621 630 4.927425 TGTAGCTCGTCCACAGTTTTTATC 59.073 41.667 0.00 0.00 0.00 1.75
672 682 3.055385 CACCTAATTCGGTCTCCTTCCAA 60.055 47.826 0.00 0.00 34.29 3.53
704 714 5.237996 GCCTACTCTCTAACAAAACGGTTTT 59.762 40.000 12.86 12.86 32.29 2.43
706 716 4.040095 AGCCTACTCTCTAACAAAACGGTT 59.960 41.667 0.00 0.00 34.81 4.44
717 727 6.720288 ACAACTACTCAAAAGCCTACTCTCTA 59.280 38.462 0.00 0.00 0.00 2.43
739 749 2.379972 CCAAAACACCTACACCCACAA 58.620 47.619 0.00 0.00 0.00 3.33
816 827 4.400884 TGGCGTGCCACATTTTTATAGAAT 59.599 37.500 10.06 0.00 41.89 2.40
833 844 1.209128 GAGGATACGTCAATGGCGTG 58.791 55.000 23.86 0.00 42.87 5.34
861 872 2.488153 GCTTGCACGGTCCTAATTCTTT 59.512 45.455 0.00 0.00 0.00 2.52
862 873 2.084546 GCTTGCACGGTCCTAATTCTT 58.915 47.619 0.00 0.00 0.00 2.52
863 874 1.679032 GGCTTGCACGGTCCTAATTCT 60.679 52.381 0.00 0.00 0.00 2.40
864 875 0.733150 GGCTTGCACGGTCCTAATTC 59.267 55.000 0.00 0.00 0.00 2.17
865 876 0.328258 AGGCTTGCACGGTCCTAATT 59.672 50.000 0.00 0.00 0.00 1.40
866 877 0.328258 AAGGCTTGCACGGTCCTAAT 59.672 50.000 0.00 0.00 0.00 1.73
867 878 0.109723 AAAGGCTTGCACGGTCCTAA 59.890 50.000 0.00 0.00 0.00 2.69
868 879 0.109723 AAAAGGCTTGCACGGTCCTA 59.890 50.000 0.00 0.00 0.00 2.94
869 880 0.755327 AAAAAGGCTTGCACGGTCCT 60.755 50.000 0.00 0.00 0.00 3.85
870 881 0.955905 TAAAAAGGCTTGCACGGTCC 59.044 50.000 0.00 0.00 0.00 4.46
871 882 2.227865 TCATAAAAAGGCTTGCACGGTC 59.772 45.455 0.00 0.00 0.00 4.79
872 883 2.235016 TCATAAAAAGGCTTGCACGGT 58.765 42.857 0.00 0.00 0.00 4.83
873 884 3.296322 TTCATAAAAAGGCTTGCACGG 57.704 42.857 0.00 0.00 0.00 4.94
874 885 5.649602 TTTTTCATAAAAAGGCTTGCACG 57.350 34.783 0.00 0.00 35.84 5.34
894 905 1.746787 GACGGTGAGGGTGTTGTTTTT 59.253 47.619 0.00 0.00 0.00 1.94
895 906 1.064979 AGACGGTGAGGGTGTTGTTTT 60.065 47.619 0.00 0.00 0.00 2.43
896 907 0.544697 AGACGGTGAGGGTGTTGTTT 59.455 50.000 0.00 0.00 0.00 2.83
897 908 0.179056 CAGACGGTGAGGGTGTTGTT 60.179 55.000 0.00 0.00 0.00 2.83
898 909 1.445942 CAGACGGTGAGGGTGTTGT 59.554 57.895 0.00 0.00 0.00 3.32
899 910 1.961277 GCAGACGGTGAGGGTGTTG 60.961 63.158 0.00 0.00 0.00 3.33
900 911 1.768684 ATGCAGACGGTGAGGGTGTT 61.769 55.000 0.00 0.00 0.00 3.32
901 912 1.768684 AATGCAGACGGTGAGGGTGT 61.769 55.000 0.00 0.00 0.00 4.16
902 913 1.003355 AATGCAGACGGTGAGGGTG 60.003 57.895 0.00 0.00 0.00 4.61
903 914 1.296715 GAATGCAGACGGTGAGGGT 59.703 57.895 0.00 0.00 0.00 4.34
934 945 1.271656 CGTAACAGGGACGAGAAGGTT 59.728 52.381 0.00 0.00 42.98 3.50
993 1004 0.673644 CGTCGGCTTCCATCTGGTTT 60.674 55.000 0.00 0.00 36.34 3.27
1073 1084 3.700109 CGGAGGAGGAGAAGTGCA 58.300 61.111 0.00 0.00 0.00 4.57
1416 1427 6.156949 TCCAGGAGCTTAGTAGATGTGAAAAT 59.843 38.462 0.00 0.00 0.00 1.82
1420 1431 4.211125 CTCCAGGAGCTTAGTAGATGTGA 58.789 47.826 2.60 0.00 0.00 3.58
1455 1466 6.637254 CACAATTTCAGATATTCAGATGCAGC 59.363 38.462 0.00 0.00 0.00 5.25
1572 1586 7.331193 GTGGTGTTTGTCCTCTACTATTACAAG 59.669 40.741 0.00 0.00 32.18 3.16
1587 1601 4.574828 ACTAATCTGTGTGTGGTGTTTGTC 59.425 41.667 0.00 0.00 0.00 3.18
1646 1660 0.029300 GACGCTTCAAGTGCTGCAAA 59.971 50.000 2.77 0.00 0.00 3.68
2404 2424 5.531287 ACATCCGTTGTCTAAGAAGCTTTTT 59.469 36.000 7.46 7.46 30.89 1.94
2492 2512 2.225963 CCAGAAAGCAGTTGCAAGAGAG 59.774 50.000 0.00 0.00 45.16 3.20
2608 2628 3.735237 ACACGGAGGCAGAACTATATG 57.265 47.619 0.00 0.00 0.00 1.78
2669 2689 8.589629 GCAATGCAAAGATGTTATGAAACTAAG 58.410 33.333 0.00 0.00 36.51 2.18
2780 2800 3.602075 TACGGGAGGTGGAGCAGCT 62.602 63.158 0.00 0.00 45.28 4.24
2809 2829 5.457052 GGAGGGAGTAGAAGCTACTGATAGT 60.457 48.000 11.51 0.00 0.00 2.12
2824 2844 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2825 2845 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2826 2846 3.577805 ATTATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
2827 2847 3.010808 ACAATTATTTGGGAACGGAGGGA 59.989 43.478 2.66 0.00 37.15 4.20
2828 2848 3.361786 ACAATTATTTGGGAACGGAGGG 58.638 45.455 2.66 0.00 37.15 4.30
2829 2849 4.270008 AGACAATTATTTGGGAACGGAGG 58.730 43.478 2.66 0.00 37.15 4.30
2830 2850 5.897377 AAGACAATTATTTGGGAACGGAG 57.103 39.130 2.66 0.00 37.15 4.63
2831 2851 6.007703 AGAAAGACAATTATTTGGGAACGGA 58.992 36.000 2.66 0.00 37.15 4.69
2832 2852 6.267496 AGAAAGACAATTATTTGGGAACGG 57.733 37.500 2.66 0.00 37.15 4.44
2833 2853 6.967199 GCTAGAAAGACAATTATTTGGGAACG 59.033 38.462 0.00 0.00 37.15 3.95
2834 2854 7.093945 TGGCTAGAAAGACAATTATTTGGGAAC 60.094 37.037 0.00 0.00 38.01 3.62
2835 2855 6.951198 TGGCTAGAAAGACAATTATTTGGGAA 59.049 34.615 0.00 0.00 38.01 3.97
2836 2856 6.489603 TGGCTAGAAAGACAATTATTTGGGA 58.510 36.000 0.00 0.00 38.01 4.37
2837 2857 6.773976 TGGCTAGAAAGACAATTATTTGGG 57.226 37.500 0.00 0.00 38.01 4.12
2838 2858 8.230472 AGATGGCTAGAAAGACAATTATTTGG 57.770 34.615 0.00 0.00 46.32 3.28
2839 2859 8.896744 TGAGATGGCTAGAAAGACAATTATTTG 58.103 33.333 0.00 0.00 46.32 2.32
2840 2860 9.466497 TTGAGATGGCTAGAAAGACAATTATTT 57.534 29.630 0.00 0.00 46.32 1.40
2841 2861 9.466497 TTTGAGATGGCTAGAAAGACAATTATT 57.534 29.630 0.00 0.00 46.32 1.40
2842 2862 9.638176 ATTTGAGATGGCTAGAAAGACAATTAT 57.362 29.630 0.00 0.00 46.32 1.28
2843 2863 8.896744 CATTTGAGATGGCTAGAAAGACAATTA 58.103 33.333 0.00 0.00 46.32 1.40
2844 2864 7.613022 TCATTTGAGATGGCTAGAAAGACAATT 59.387 33.333 0.00 0.00 46.32 2.32
2845 2865 7.114754 TCATTTGAGATGGCTAGAAAGACAAT 58.885 34.615 0.00 0.00 46.32 2.71
2846 2866 6.475504 TCATTTGAGATGGCTAGAAAGACAA 58.524 36.000 0.00 0.00 46.32 3.18
2848 2868 6.597280 AGTTCATTTGAGATGGCTAGAAAGAC 59.403 38.462 0.00 0.00 0.00 3.01
2849 2869 6.715280 AGTTCATTTGAGATGGCTAGAAAGA 58.285 36.000 0.00 0.00 0.00 2.52
2850 2870 6.998968 AGTTCATTTGAGATGGCTAGAAAG 57.001 37.500 0.00 0.00 0.00 2.62
2851 2871 7.394016 TGTAGTTCATTTGAGATGGCTAGAAA 58.606 34.615 0.00 0.00 0.00 2.52
2852 2872 6.946340 TGTAGTTCATTTGAGATGGCTAGAA 58.054 36.000 0.00 0.00 0.00 2.10
2853 2873 6.544928 TGTAGTTCATTTGAGATGGCTAGA 57.455 37.500 0.00 0.00 0.00 2.43
2854 2874 6.595326 TGTTGTAGTTCATTTGAGATGGCTAG 59.405 38.462 0.00 0.00 0.00 3.42
2855 2875 6.472016 TGTTGTAGTTCATTTGAGATGGCTA 58.528 36.000 0.00 0.00 0.00 3.93
2856 2876 5.316167 TGTTGTAGTTCATTTGAGATGGCT 58.684 37.500 0.00 0.00 0.00 4.75
2857 2877 5.627499 TGTTGTAGTTCATTTGAGATGGC 57.373 39.130 0.00 0.00 0.00 4.40
2858 2878 7.401860 CGTATGTTGTAGTTCATTTGAGATGG 58.598 38.462 0.00 0.00 0.00 3.51
2859 2879 7.277760 TCCGTATGTTGTAGTTCATTTGAGATG 59.722 37.037 0.00 0.00 0.00 2.90
2860 2880 7.327975 TCCGTATGTTGTAGTTCATTTGAGAT 58.672 34.615 0.00 0.00 0.00 2.75
2861 2881 6.693466 TCCGTATGTTGTAGTTCATTTGAGA 58.307 36.000 0.00 0.00 0.00 3.27
2862 2882 6.961359 TCCGTATGTTGTAGTTCATTTGAG 57.039 37.500 0.00 0.00 0.00 3.02
2863 2883 6.876789 ACATCCGTATGTTGTAGTTCATTTGA 59.123 34.615 0.00 0.00 44.07 2.69
2864 2884 7.072177 ACATCCGTATGTTGTAGTTCATTTG 57.928 36.000 0.00 0.00 44.07 2.32
2865 2885 8.826710 CATACATCCGTATGTTGTAGTTCATTT 58.173 33.333 0.00 0.00 46.70 2.32
2866 2886 8.365399 CATACATCCGTATGTTGTAGTTCATT 57.635 34.615 0.00 0.00 46.70 2.57
2867 2887 7.946655 CATACATCCGTATGTTGTAGTTCAT 57.053 36.000 0.00 0.00 46.70 2.57
2879 2899 9.692749 CTAAAACATGTCTACATACATCCGTAT 57.307 33.333 0.00 0.00 38.01 3.06
2880 2900 8.905850 TCTAAAACATGTCTACATACATCCGTA 58.094 33.333 0.00 0.00 38.01 4.02
2881 2901 7.778083 TCTAAAACATGTCTACATACATCCGT 58.222 34.615 0.00 0.00 38.01 4.69
2882 2902 7.921214 ACTCTAAAACATGTCTACATACATCCG 59.079 37.037 0.00 0.00 38.01 4.18
2883 2903 9.035607 CACTCTAAAACATGTCTACATACATCC 57.964 37.037 0.00 0.00 38.01 3.51
2884 2904 9.587772 ACACTCTAAAACATGTCTACATACATC 57.412 33.333 0.00 0.00 38.01 3.06
2890 2910 9.856488 GAATCTACACTCTAAAACATGTCTACA 57.144 33.333 0.00 0.00 0.00 2.74
2891 2911 9.856488 TGAATCTACACTCTAAAACATGTCTAC 57.144 33.333 0.00 0.00 0.00 2.59
2892 2912 9.856488 GTGAATCTACACTCTAAAACATGTCTA 57.144 33.333 0.00 0.00 37.73 2.59
2893 2913 8.589338 AGTGAATCTACACTCTAAAACATGTCT 58.411 33.333 0.00 0.00 46.36 3.41
2894 2914 8.764524 AGTGAATCTACACTCTAAAACATGTC 57.235 34.615 0.00 0.00 46.36 3.06
2907 2927 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2908 2928 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2909 2929 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2910 2930 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2911 2931 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2912 2932 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2913 2933 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2914 2934 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2915 2935 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2916 2936 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2917 2937 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2918 2938 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2919 2939 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2920 2940 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2921 2941 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2922 2942 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2923 2943 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2924 2944 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2925 2945 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2926 2946 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2927 2947 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
2928 2948 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2929 2949 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
2930 2950 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2931 2951 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2933 2953 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2934 2954 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2935 2955 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2936 2956 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2937 2957 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2938 2958 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2939 2959 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2940 2960 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2941 2961 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2954 2974 9.595823 CCGTTCCTAAATAATTGTCTTTCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
2955 2975 9.595823 TCCGTTCCTAAATAATTGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
2956 2976 9.595823 CTCCGTTCCTAAATAATTGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
2957 2977 7.553044 CCTCCGTTCCTAAATAATTGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
2958 2978 7.201705 CCCTCCGTTCCTAAATAATTGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
2959 2979 6.602009 CCCTCCGTTCCTAAATAATTGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
2960 2980 6.069847 TCCCTCCGTTCCTAAATAATTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
2961 2981 5.427481 TCCCTCCGTTCCTAAATAATTGTCT 59.573 40.000 0.00 0.00 0.00 3.41
2962 2982 5.677567 TCCCTCCGTTCCTAAATAATTGTC 58.322 41.667 0.00 0.00 0.00 3.18
2963 2983 5.191124 ACTCCCTCCGTTCCTAAATAATTGT 59.809 40.000 0.00 0.00 0.00 2.71
2964 2984 5.681639 ACTCCCTCCGTTCCTAAATAATTG 58.318 41.667 0.00 0.00 0.00 2.32
2965 2985 5.970501 ACTCCCTCCGTTCCTAAATAATT 57.029 39.130 0.00 0.00 0.00 1.40
2966 2986 5.901276 TGTACTCCCTCCGTTCCTAAATAAT 59.099 40.000 0.00 0.00 0.00 1.28
2967 2987 5.271598 TGTACTCCCTCCGTTCCTAAATAA 58.728 41.667 0.00 0.00 0.00 1.40
2968 2988 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2969 2989 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2970 2990 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2971 2991 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2972 2992 2.622452 CCTTGTACTCCCTCCGTTCCTA 60.622 54.545 0.00 0.00 0.00 2.94
2973 2993 1.558233 CTTGTACTCCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
2974 2994 0.535797 CCTTGTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
2975 2995 1.264295 ACCTTGTACTCCCTCCGTTC 58.736 55.000 0.00 0.00 0.00 3.95
2976 2996 2.564504 GTTACCTTGTACTCCCTCCGTT 59.435 50.000 0.00 0.00 0.00 4.44
2977 2997 2.174360 GTTACCTTGTACTCCCTCCGT 58.826 52.381 0.00 0.00 0.00 4.69
2978 2998 2.454538 AGTTACCTTGTACTCCCTCCG 58.545 52.381 0.00 0.00 0.00 4.63
2979 2999 3.703556 GGTAGTTACCTTGTACTCCCTCC 59.296 52.174 1.00 0.00 43.10 4.30
2980 3000 4.159321 GTGGTAGTTACCTTGTACTCCCTC 59.841 50.000 9.58 0.00 46.58 4.30
2981 3001 4.092279 GTGGTAGTTACCTTGTACTCCCT 58.908 47.826 9.58 0.00 46.58 4.20
2982 3002 4.092279 AGTGGTAGTTACCTTGTACTCCC 58.908 47.826 9.58 0.00 46.58 4.30
2983 3003 5.735285 AAGTGGTAGTTACCTTGTACTCC 57.265 43.478 9.58 0.00 46.58 3.85
2984 3004 7.219484 TGTAAGTGGTAGTTACCTTGTACTC 57.781 40.000 9.58 0.00 46.58 2.59
2985 3005 7.234166 ACATGTAAGTGGTAGTTACCTTGTACT 59.766 37.037 9.58 2.24 46.58 2.73
2986 3006 7.330208 CACATGTAAGTGGTAGTTACCTTGTAC 59.670 40.741 0.00 8.63 46.58 2.90
3010 3030 1.312815 AGCAAGTGAGCCAAGAACAC 58.687 50.000 0.00 0.00 34.23 3.32
3011 3031 2.057137 AAGCAAGTGAGCCAAGAACA 57.943 45.000 0.00 0.00 34.23 3.18
3015 3035 4.574599 AACTAAAAGCAAGTGAGCCAAG 57.425 40.909 0.00 0.00 34.23 3.61
3154 3174 9.971744 CTAAATCACACAAAAACTTGGAAAAAG 57.028 29.630 0.00 0.00 0.00 2.27
3189 3209 5.120399 ACTCATCGTGGTTTTAGTTCACAA 58.880 37.500 0.00 0.00 0.00 3.33
3190 3210 4.699637 ACTCATCGTGGTTTTAGTTCACA 58.300 39.130 0.00 0.00 0.00 3.58
3191 3211 6.774354 TTACTCATCGTGGTTTTAGTTCAC 57.226 37.500 0.00 0.00 0.00 3.18
3193 3213 7.171434 CGATTTACTCATCGTGGTTTTAGTTC 58.829 38.462 0.00 0.00 41.03 3.01
3194 3214 6.091713 CCGATTTACTCATCGTGGTTTTAGTT 59.908 38.462 2.68 0.00 43.86 2.24
3195 3215 5.579511 CCGATTTACTCATCGTGGTTTTAGT 59.420 40.000 2.68 0.00 43.86 2.24
3196 3216 5.808540 TCCGATTTACTCATCGTGGTTTTAG 59.191 40.000 2.68 0.00 43.86 1.85
3198 3218 4.571919 TCCGATTTACTCATCGTGGTTTT 58.428 39.130 2.68 0.00 43.86 2.43
3199 3219 4.196626 TCCGATTTACTCATCGTGGTTT 57.803 40.909 2.68 0.00 43.86 3.27
3202 3222 3.517602 TGTTCCGATTTACTCATCGTGG 58.482 45.455 2.68 0.00 43.86 4.94
3203 3223 4.421058 TCTGTTCCGATTTACTCATCGTG 58.579 43.478 2.68 0.00 43.86 4.35
3204 3224 4.440250 CCTCTGTTCCGATTTACTCATCGT 60.440 45.833 2.68 0.00 43.86 3.73
3205 3225 4.045104 CCTCTGTTCCGATTTACTCATCG 58.955 47.826 0.00 0.00 44.78 3.84
3206 3226 4.099573 TCCCTCTGTTCCGATTTACTCATC 59.900 45.833 0.00 0.00 0.00 2.92
3211 3231 3.889520 ACTCCCTCTGTTCCGATTTAC 57.110 47.619 0.00 0.00 0.00 2.01
3213 3233 3.709587 TCTACTCCCTCTGTTCCGATTT 58.290 45.455 0.00 0.00 0.00 2.17
3216 3236 2.893215 TTCTACTCCCTCTGTTCCGA 57.107 50.000 0.00 0.00 0.00 4.55
3217 3237 2.482142 GCATTCTACTCCCTCTGTTCCG 60.482 54.545 0.00 0.00 0.00 4.30
3218 3238 2.501723 TGCATTCTACTCCCTCTGTTCC 59.498 50.000 0.00 0.00 0.00 3.62
3219 3239 3.895232 TGCATTCTACTCCCTCTGTTC 57.105 47.619 0.00 0.00 0.00 3.18
3220 3240 3.118112 CCATGCATTCTACTCCCTCTGTT 60.118 47.826 0.00 0.00 0.00 3.16
3221 3241 2.437281 CCATGCATTCTACTCCCTCTGT 59.563 50.000 0.00 0.00 0.00 3.41
3222 3242 2.702478 TCCATGCATTCTACTCCCTCTG 59.298 50.000 0.00 0.00 0.00 3.35
3223 3243 2.971330 CTCCATGCATTCTACTCCCTCT 59.029 50.000 0.00 0.00 0.00 3.69
3265 3334 5.580022 AGTTAATGGTGGCAAGAAGGTATT 58.420 37.500 0.00 0.00 0.00 1.89
3307 3376 5.655532 AGGCCGTTCTAGAGTATTAAGAACA 59.344 40.000 13.16 0.00 46.06 3.18
3524 3600 2.311463 AGTACTGCACGCCATAGAGAT 58.689 47.619 0.00 0.00 0.00 2.75
3561 3637 1.467734 CATCAGAAGTTCCTGCAGCAC 59.532 52.381 8.66 7.20 34.28 4.40
3626 3702 6.706270 CACACCACTTCAGATTTACAGTAGTT 59.294 38.462 0.00 0.00 0.00 2.24
3648 3724 2.159014 ACTTCTCCGTTGCTTGTACACA 60.159 45.455 0.00 0.00 0.00 3.72
3683 3759 3.694043 TGGGAGAATTTCGTCATGTCA 57.306 42.857 0.00 0.00 0.00 3.58
3692 3768 6.641169 AAGTCAAAGAGTTGGGAGAATTTC 57.359 37.500 0.00 0.00 35.29 2.17
3710 3786 8.918202 ACACATAAGGAAGAACAATAAAGTCA 57.082 30.769 0.00 0.00 0.00 3.41
3727 3803 9.745018 ATATCCTTGATCCCAAATACACATAAG 57.255 33.333 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.