Multiple sequence alignment - TraesCS2B01G260100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G260100 chr2B 100.000 7348 0 0 1 7348 325850806 325843459 0.000000e+00 13570.0
1 TraesCS2B01G260100 chr2B 85.115 524 75 3 6696 7218 326843350 326842829 3.900000e-147 532.0
2 TraesCS2B01G260100 chr2B 94.928 138 7 0 4921 5058 34111183 34111046 4.460000e-52 217.0
3 TraesCS2B01G260100 chr2A 96.293 2266 51 11 2673 4924 323015559 323013313 0.000000e+00 3688.0
4 TraesCS2B01G260100 chr2A 94.713 1116 46 4 1560 2674 323016747 323015644 0.000000e+00 1722.0
5 TraesCS2B01G260100 chr2A 95.459 925 33 4 5051 5973 323013312 323012395 0.000000e+00 1467.0
6 TraesCS2B01G260100 chr2A 95.246 568 21 5 994 1559 323017450 323016887 0.000000e+00 894.0
7 TraesCS2B01G260100 chr2A 92.548 416 14 3 5998 6413 323011313 323010915 1.370000e-161 580.0
8 TraesCS2B01G260100 chr2A 94.937 79 4 0 6405 6483 322996196 322996118 2.780000e-24 124.0
9 TraesCS2B01G260100 chr2D 97.206 1718 45 3 2469 4184 254982050 254980334 0.000000e+00 2904.0
10 TraesCS2B01G260100 chr2D 96.983 928 26 2 5048 5973 254979564 254978637 0.000000e+00 1557.0
11 TraesCS2B01G260100 chr2D 95.553 877 37 2 1562 2437 254982926 254982051 0.000000e+00 1402.0
12 TraesCS2B01G260100 chr2D 96.379 718 15 2 4218 4925 254980278 254979562 0.000000e+00 1171.0
13 TraesCS2B01G260100 chr2D 96.552 551 17 1 5998 6548 254977555 254977007 0.000000e+00 911.0
14 TraesCS2B01G260100 chr2D 95.062 567 24 3 984 1549 254983758 254983195 0.000000e+00 889.0
15 TraesCS2B01G260100 chr2D 85.348 819 113 3 17 829 472453215 472452398 0.000000e+00 841.0
16 TraesCS2B01G260100 chr2D 89.423 624 40 10 6596 7218 254977000 254976402 0.000000e+00 763.0
17 TraesCS2B01G260100 chr2D 84.734 714 95 9 6635 7344 107485518 107486221 0.000000e+00 702.0
18 TraesCS2B01G260100 chr2D 84.580 655 88 12 6694 7344 277781410 277782055 8.040000e-179 638.0
19 TraesCS2B01G260100 chr2D 88.158 76 9 0 2415 2490 84679933 84679858 2.820000e-14 91.6
20 TraesCS2B01G260100 chr2D 87.838 74 8 1 2427 2499 142662527 142662454 1.310000e-12 86.1
21 TraesCS2B01G260100 chr5D 86.548 840 98 8 1 830 82965634 82966468 0.000000e+00 911.0
22 TraesCS2B01G260100 chr5D 85.528 843 102 9 6 830 189263323 189262483 0.000000e+00 863.0
23 TraesCS2B01G260100 chr5D 79.130 460 83 10 4456 4910 492562896 492562445 9.260000e-79 305.0
24 TraesCS2B01G260100 chr5D 93.750 112 6 1 829 939 277132589 277132700 4.560000e-37 167.0
25 TraesCS2B01G260100 chr5D 89.157 83 6 3 2424 2503 551539830 551539912 4.690000e-17 100.0
26 TraesCS2B01G260100 chr5D 88.571 70 8 0 2415 2484 391374859 391374928 1.310000e-12 86.1
27 TraesCS2B01G260100 chr5D 92.453 53 4 0 2408 2460 340755976 340756028 7.910000e-10 76.8
28 TraesCS2B01G260100 chr5D 79.012 81 17 0 3447 3527 493252748 493252828 1.000000e-03 56.5
29 TraesCS2B01G260100 chr7D 85.612 841 106 11 1 829 210367596 210366759 0.000000e+00 869.0
30 TraesCS2B01G260100 chr7D 85.783 415 53 5 6934 7344 235446535 235446947 1.130000e-117 435.0
31 TraesCS2B01G260100 chr7D 92.982 114 7 1 827 939 259284809 259284922 1.640000e-36 165.0
32 TraesCS2B01G260100 chr7D 92.174 115 8 1 829 942 58507312 58507198 2.120000e-35 161.0
33 TraesCS2B01G260100 chr7D 88.636 88 9 1 2413 2500 131468365 131468451 1.010000e-18 106.0
34 TraesCS2B01G260100 chr7D 80.460 87 14 2 2415 2500 475193875 475193959 6.150000e-06 63.9
35 TraesCS2B01G260100 chr3D 84.770 847 107 17 1 832 525821720 525820881 0.000000e+00 830.0
36 TraesCS2B01G260100 chr3D 84.780 841 111 16 1 830 113915028 113915862 0.000000e+00 828.0
37 TraesCS2B01G260100 chr3D 84.780 841 111 13 1 829 525789550 525788715 0.000000e+00 828.0
38 TraesCS2B01G260100 chr3D 93.750 112 6 1 832 942 341513745 341513634 4.560000e-37 167.0
39 TraesCS2B01G260100 chr3D 84.884 86 13 0 2415 2500 373490402 373490487 3.650000e-13 87.9
40 TraesCS2B01G260100 chr3D 81.633 98 18 0 2406 2503 590332594 590332691 1.700000e-11 82.4
41 TraesCS2B01G260100 chr3B 85.660 788 104 3 49 828 583919269 583918483 0.000000e+00 821.0
42 TraesCS2B01G260100 chr3B 81.655 725 108 20 6631 7344 308186418 308185708 4.940000e-161 579.0
43 TraesCS2B01G260100 chr3B 87.307 323 36 5 6683 7003 317604894 317605213 1.510000e-96 364.0
44 TraesCS2B01G260100 chr3B 88.636 88 10 0 2415 2502 423807098 423807011 2.800000e-19 108.0
45 TraesCS2B01G260100 chr5B 84.236 831 108 15 12 829 293379640 293378820 0.000000e+00 787.0
46 TraesCS2B01G260100 chr5B 96.241 133 5 0 4918 5050 115412696 115412564 1.240000e-52 219.0
47 TraesCS2B01G260100 chr5B 93.706 143 8 1 4922 5064 478813485 478813626 5.770000e-51 213.0
48 TraesCS2B01G260100 chr4D 88.817 465 51 1 6712 7176 109084089 109083626 2.970000e-158 569.0
49 TraesCS2B01G260100 chr4D 81.834 589 100 5 6761 7344 176702461 176701875 8.570000e-134 488.0
50 TraesCS2B01G260100 chr4D 93.162 117 7 1 827 942 47918498 47918382 3.530000e-38 171.0
51 TraesCS2B01G260100 chr6D 80.381 683 93 25 6640 7302 249997599 249998260 1.430000e-131 481.0
52 TraesCS2B01G260100 chr6D 88.172 93 11 0 2409 2501 338696123 338696215 2.170000e-20 111.0
53 TraesCS2B01G260100 chr6D 92.105 76 6 0 2414 2489 122992192 122992117 2.800000e-19 108.0
54 TraesCS2B01G260100 chr6D 88.679 53 6 0 2415 2467 157930406 157930458 1.710000e-06 65.8
55 TraesCS2B01G260100 chr6D 92.857 42 3 0 2413 2454 166775071 166775112 2.210000e-05 62.1
56 TraesCS2B01G260100 chr6D 92.500 40 3 0 2415 2454 88875915 88875954 2.860000e-04 58.4
57 TraesCS2B01G260100 chr6D 92.500 40 3 0 2415 2454 94768030 94768069 2.860000e-04 58.4
58 TraesCS2B01G260100 chr6D 92.500 40 3 0 2415 2454 128910382 128910421 2.860000e-04 58.4
59 TraesCS2B01G260100 chr6A 85.788 387 39 11 6640 7025 346432999 346432628 5.340000e-106 396.0
60 TraesCS2B01G260100 chr6A 90.698 86 8 0 2415 2500 548408060 548408145 1.680000e-21 115.0
61 TraesCS2B01G260100 chr5A 78.913 460 84 10 4456 4910 615315436 615315887 4.310000e-77 300.0
62 TraesCS2B01G260100 chr5A 86.364 88 12 0 2403 2490 494571909 494571996 6.070000e-16 97.1
63 TraesCS2B01G260100 chr5A 86.207 87 12 0 2415 2501 559514677 559514591 2.180000e-15 95.3
64 TraesCS2B01G260100 chr4A 97.656 128 3 0 4923 5050 695804035 695803908 3.450000e-53 220.0
65 TraesCS2B01G260100 chr4A 97.656 128 3 0 4923 5050 695870336 695870209 3.450000e-53 220.0
66 TraesCS2B01G260100 chr4A 96.212 132 5 0 4920 5051 730340882 730341013 4.460000e-52 217.0
67 TraesCS2B01G260100 chr4A 87.209 86 11 0 2415 2500 565436207 565436122 1.690000e-16 99.0
68 TraesCS2B01G260100 chr1A 96.269 134 4 1 4920 5052 3261587 3261720 1.240000e-52 219.0
69 TraesCS2B01G260100 chr1A 85.526 76 11 0 2426 2501 256814056 256813981 6.110000e-11 80.5
70 TraesCS2B01G260100 chr1A 88.462 52 6 0 2413 2464 496439982 496440033 6.150000e-06 63.9
71 TraesCS2B01G260100 chr6B 92.105 152 10 2 4920 5070 81012013 81012163 5.770000e-51 213.0
72 TraesCS2B01G260100 chr6B 92.208 77 6 0 2414 2490 713700328 713700252 7.790000e-20 110.0
73 TraesCS2B01G260100 chr6B 92.000 75 6 0 2426 2500 602828546 602828620 1.010000e-18 106.0
74 TraesCS2B01G260100 chr4B 93.706 143 8 1 4922 5064 566413841 566413982 5.770000e-51 213.0
75 TraesCS2B01G260100 chr4B 92.857 112 7 1 832 942 633671998 633671887 2.120000e-35 161.0
76 TraesCS2B01G260100 chr4B 91.304 46 3 1 6624 6669 167476498 167476542 2.210000e-05 62.1
77 TraesCS2B01G260100 chr7B 93.913 115 6 1 829 942 84230414 84230300 9.800000e-39 172.0
78 TraesCS2B01G260100 chr7B 93.043 115 7 1 829 942 597296674 597296560 4.560000e-37 167.0
79 TraesCS2B01G260100 chr7B 90.789 76 7 0 2415 2490 533304590 533304515 1.300000e-17 102.0
80 TraesCS2B01G260100 chr1D 93.750 112 6 1 829 939 461337665 461337776 4.560000e-37 167.0
81 TraesCS2B01G260100 chr1D 92.857 42 3 0 2428 2469 387942960 387943001 2.210000e-05 62.1
82 TraesCS2B01G260100 chr1D 84.483 58 9 0 2415 2472 202555742 202555685 2.860000e-04 58.4
83 TraesCS2B01G260100 chrUn 92.500 40 3 0 2415 2454 115400248 115400287 2.860000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G260100 chr2B 325843459 325850806 7347 True 13570.0 13570 100.000000 1 7348 1 chr2B.!!$R2 7347
1 TraesCS2B01G260100 chr2B 326842829 326843350 521 True 532.0 532 85.115000 6696 7218 1 chr2B.!!$R3 522
2 TraesCS2B01G260100 chr2A 323010915 323017450 6535 True 1670.2 3688 94.851800 994 6413 5 chr2A.!!$R2 5419
3 TraesCS2B01G260100 chr2D 254976402 254983758 7356 True 1371.0 2904 95.308286 984 7218 7 chr2D.!!$R4 6234
4 TraesCS2B01G260100 chr2D 472452398 472453215 817 True 841.0 841 85.348000 17 829 1 chr2D.!!$R3 812
5 TraesCS2B01G260100 chr2D 107485518 107486221 703 False 702.0 702 84.734000 6635 7344 1 chr2D.!!$F1 709
6 TraesCS2B01G260100 chr2D 277781410 277782055 645 False 638.0 638 84.580000 6694 7344 1 chr2D.!!$F2 650
7 TraesCS2B01G260100 chr5D 82965634 82966468 834 False 911.0 911 86.548000 1 830 1 chr5D.!!$F1 829
8 TraesCS2B01G260100 chr5D 189262483 189263323 840 True 863.0 863 85.528000 6 830 1 chr5D.!!$R1 824
9 TraesCS2B01G260100 chr7D 210366759 210367596 837 True 869.0 869 85.612000 1 829 1 chr7D.!!$R2 828
10 TraesCS2B01G260100 chr3D 525820881 525821720 839 True 830.0 830 84.770000 1 832 1 chr3D.!!$R3 831
11 TraesCS2B01G260100 chr3D 113915028 113915862 834 False 828.0 828 84.780000 1 830 1 chr3D.!!$F1 829
12 TraesCS2B01G260100 chr3D 525788715 525789550 835 True 828.0 828 84.780000 1 829 1 chr3D.!!$R2 828
13 TraesCS2B01G260100 chr3B 583918483 583919269 786 True 821.0 821 85.660000 49 828 1 chr3B.!!$R3 779
14 TraesCS2B01G260100 chr3B 308185708 308186418 710 True 579.0 579 81.655000 6631 7344 1 chr3B.!!$R1 713
15 TraesCS2B01G260100 chr5B 293378820 293379640 820 True 787.0 787 84.236000 12 829 1 chr5B.!!$R2 817
16 TraesCS2B01G260100 chr4D 176701875 176702461 586 True 488.0 488 81.834000 6761 7344 1 chr4D.!!$R3 583
17 TraesCS2B01G260100 chr6D 249997599 249998260 661 False 481.0 481 80.381000 6640 7302 1 chr6D.!!$F6 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 45 0.041535 TAAGCCCCCAAGACGACCTA 59.958 55.000 0.00 0.00 0.00 3.08 F
896 923 0.111061 TCTGCACTCAAAGCATGGGT 59.889 50.000 0.00 0.00 46.34 4.51 F
1870 2154 0.115152 TCCACAGAGAGCAGGGAAGA 59.885 55.000 0.00 0.00 0.00 2.87 F
2141 2425 0.371645 GGCGCTGAAGACGATTCAAG 59.628 55.000 7.64 7.29 0.00 3.02 F
3608 3983 1.211212 TCTGATCAGTGAGCATTGGGG 59.789 52.381 21.92 0.00 0.00 4.96 F
3827 4202 0.690192 TGGAATTCGCTGGGACAAGA 59.310 50.000 0.00 0.00 38.70 3.02 F
4938 5345 1.286849 TCATGTACTCCCTCCTTCCGA 59.713 52.381 0.00 0.00 0.00 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1336 1363 0.456142 GAGCGCGATTTTCCCCAAAC 60.456 55.000 12.10 0.0 0.00 2.93 R
2882 3254 0.038159 AGTAGCACGACTGGCAACTC 60.038 55.000 0.00 0.0 37.61 3.01 R
3498 3873 0.552848 CTTGCCACTCATATGGGGGT 59.447 55.000 7.68 0.0 40.43 4.95 R
3827 4202 2.264455 AGGAACAAGAGGATGCTCACT 58.736 47.619 17.24 0.0 0.00 3.41 R
5027 5434 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
5032 5439 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.0 44.66 4.30 R
6570 8036 0.035534 CCCACATCACAATGGTCCGA 60.036 55.000 0.00 0.0 37.19 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 45 0.041535 TAAGCCCCCAAGACGACCTA 59.958 55.000 0.00 0.00 0.00 3.08
69 72 8.797266 AATGGAAAAACTTTCTACACGAATTC 57.203 30.769 0.00 0.00 0.00 2.17
71 74 7.992008 TGGAAAAACTTTCTACACGAATTCTT 58.008 30.769 3.52 0.00 0.00 2.52
145 148 1.406069 CGTATGCCAAAGTCAGAGCCT 60.406 52.381 0.00 0.00 0.00 4.58
205 216 1.205655 CCCACGAGTCATGATGTCTGT 59.794 52.381 0.00 0.00 0.00 3.41
209 220 2.562738 ACGAGTCATGATGTCTGTTGGA 59.437 45.455 0.00 0.00 0.00 3.53
213 224 5.287674 AGTCATGATGTCTGTTGGATAGG 57.712 43.478 0.00 0.00 0.00 2.57
234 245 0.606401 CCACCAATCGGCTGTCTTGT 60.606 55.000 8.93 0.00 34.57 3.16
241 252 1.595109 CGGCTGTCTTGTGTGAGCA 60.595 57.895 0.00 0.00 32.83 4.26
320 332 2.976729 CGTCGAAACGGTCAAATTTGT 58.023 42.857 17.47 0.00 45.21 2.83
336 350 6.827762 TCAAATTTGTTTTTGGGCTCATCTTT 59.172 30.769 17.47 0.00 37.23 2.52
337 351 7.338957 TCAAATTTGTTTTTGGGCTCATCTTTT 59.661 29.630 17.47 0.00 37.23 2.27
340 354 7.727331 TTTGTTTTTGGGCTCATCTTTTATG 57.273 32.000 0.00 0.00 0.00 1.90
395 409 5.880901 ACCAAACTGATGTTCCAGACTTAT 58.119 37.500 0.00 0.00 37.59 1.73
438 452 7.698836 AATTTTGAAAAGATTTGGACGTGAG 57.301 32.000 0.00 0.00 0.00 3.51
460 474 5.365619 AGTTGGAGTCATTTTCTTGTACGT 58.634 37.500 0.00 0.00 0.00 3.57
476 490 0.968901 ACGTGAAGTCCATCCGCCTA 60.969 55.000 0.00 0.00 0.00 3.93
600 627 6.555315 GTTCTTCATCTGTTCTTGTTGTTGT 58.445 36.000 0.00 0.00 0.00 3.32
722 749 1.674817 CGGGTCTACAAAAGCATCCGT 60.675 52.381 0.00 0.00 31.58 4.69
727 754 0.320858 TACAAAAGCATCCGTCGGCA 60.321 50.000 6.34 0.00 0.00 5.69
774 801 3.329688 CTCCTTCGACGCGAGCTGT 62.330 63.158 15.93 0.00 37.14 4.40
839 866 2.664916 GTGCGAACACAATGCATTTCT 58.335 42.857 9.83 0.00 46.61 2.52
840 867 2.406024 GTGCGAACACAATGCATTTCTG 59.594 45.455 9.83 10.53 46.61 3.02
841 868 1.987770 GCGAACACAATGCATTTCTGG 59.012 47.619 9.83 0.59 0.00 3.86
842 869 2.607771 GCGAACACAATGCATTTCTGGT 60.608 45.455 9.83 6.66 0.00 4.00
843 870 3.365868 GCGAACACAATGCATTTCTGGTA 60.366 43.478 9.83 0.00 0.00 3.25
844 871 4.675146 GCGAACACAATGCATTTCTGGTAT 60.675 41.667 9.83 0.00 0.00 2.73
845 872 4.794762 CGAACACAATGCATTTCTGGTATG 59.205 41.667 9.83 0.00 0.00 2.39
846 873 5.391843 CGAACACAATGCATTTCTGGTATGA 60.392 40.000 9.83 0.00 0.00 2.15
847 874 5.981088 ACACAATGCATTTCTGGTATGAA 57.019 34.783 9.83 0.00 0.00 2.57
848 875 5.957798 ACACAATGCATTTCTGGTATGAAG 58.042 37.500 9.83 0.00 0.00 3.02
849 876 5.711506 ACACAATGCATTTCTGGTATGAAGA 59.288 36.000 9.83 0.00 0.00 2.87
850 877 6.127814 ACACAATGCATTTCTGGTATGAAGAG 60.128 38.462 9.83 0.00 0.00 2.85
851 878 6.094464 CACAATGCATTTCTGGTATGAAGAGA 59.906 38.462 9.83 0.00 0.00 3.10
852 879 6.660521 ACAATGCATTTCTGGTATGAAGAGAA 59.339 34.615 9.83 0.00 0.00 2.87
853 880 7.177216 ACAATGCATTTCTGGTATGAAGAGAAA 59.823 33.333 9.83 0.00 39.42 2.52
854 881 6.500684 TGCATTTCTGGTATGAAGAGAAAC 57.499 37.500 0.00 0.00 38.26 2.78
855 882 5.415701 TGCATTTCTGGTATGAAGAGAAACC 59.584 40.000 0.00 0.00 38.26 3.27
856 883 5.415701 GCATTTCTGGTATGAAGAGAAACCA 59.584 40.000 0.00 0.00 38.26 3.67
857 884 6.071952 GCATTTCTGGTATGAAGAGAAACCAA 60.072 38.462 0.00 0.00 41.30 3.67
858 885 7.533426 CATTTCTGGTATGAAGAGAAACCAAG 58.467 38.462 0.00 0.00 41.30 3.61
859 886 4.579869 TCTGGTATGAAGAGAAACCAAGC 58.420 43.478 0.00 0.00 41.30 4.01
860 887 4.041567 TCTGGTATGAAGAGAAACCAAGCA 59.958 41.667 0.00 0.00 41.30 3.91
861 888 4.922206 TGGTATGAAGAGAAACCAAGCAT 58.078 39.130 0.00 0.00 39.02 3.79
862 889 4.701651 TGGTATGAAGAGAAACCAAGCATG 59.298 41.667 0.00 0.00 39.02 4.06
863 890 3.863142 ATGAAGAGAAACCAAGCATGC 57.137 42.857 10.51 10.51 0.00 4.06
864 891 1.888512 TGAAGAGAAACCAAGCATGCC 59.111 47.619 15.66 0.00 0.00 4.40
865 892 2.165998 GAAGAGAAACCAAGCATGCCT 58.834 47.619 15.66 0.00 0.00 4.75
866 893 3.244875 TGAAGAGAAACCAAGCATGCCTA 60.245 43.478 15.66 0.00 0.00 3.93
867 894 2.996631 AGAGAAACCAAGCATGCCTAG 58.003 47.619 15.66 5.41 0.00 3.02
868 895 2.019984 GAGAAACCAAGCATGCCTAGG 58.980 52.381 15.66 16.19 0.00 3.02
869 896 1.106285 GAAACCAAGCATGCCTAGGG 58.894 55.000 15.66 13.22 0.00 3.53
881 908 2.056985 CCTAGGGCATCCTCTCTGC 58.943 63.158 0.00 0.00 43.66 4.26
882 909 0.762082 CCTAGGGCATCCTCTCTGCA 60.762 60.000 0.00 0.00 43.66 4.41
883 910 0.392336 CTAGGGCATCCTCTCTGCAC 59.608 60.000 0.00 0.00 43.66 4.57
884 911 3.318191 GGGCATCCTCTCTGCACT 58.682 61.111 0.00 0.00 39.96 4.40
885 912 1.145819 GGGCATCCTCTCTGCACTC 59.854 63.158 0.00 0.00 39.96 3.51
886 913 1.620739 GGGCATCCTCTCTGCACTCA 61.621 60.000 0.00 0.00 39.96 3.41
887 914 0.251354 GGCATCCTCTCTGCACTCAA 59.749 55.000 0.00 0.00 41.47 3.02
888 915 1.339438 GGCATCCTCTCTGCACTCAAA 60.339 52.381 0.00 0.00 41.47 2.69
889 916 2.008329 GCATCCTCTCTGCACTCAAAG 58.992 52.381 0.00 0.00 39.46 2.77
890 917 2.008329 CATCCTCTCTGCACTCAAAGC 58.992 52.381 0.00 0.00 0.00 3.51
891 918 1.051008 TCCTCTCTGCACTCAAAGCA 58.949 50.000 0.00 0.00 40.19 3.91
892 919 1.627329 TCCTCTCTGCACTCAAAGCAT 59.373 47.619 0.00 0.00 41.82 3.79
893 920 1.738350 CCTCTCTGCACTCAAAGCATG 59.262 52.381 0.00 0.00 41.82 4.06
894 921 1.738350 CTCTCTGCACTCAAAGCATGG 59.262 52.381 0.00 0.00 41.82 3.66
895 922 0.809385 CTCTGCACTCAAAGCATGGG 59.191 55.000 0.00 0.00 41.82 4.00
896 923 0.111061 TCTGCACTCAAAGCATGGGT 59.889 50.000 0.00 0.00 46.34 4.51
897 924 0.524862 CTGCACTCAAAGCATGGGTC 59.475 55.000 0.00 0.00 38.92 4.46
898 925 0.178995 TGCACTCAAAGCATGGGTCA 60.179 50.000 0.00 0.00 38.92 4.02
899 926 1.180029 GCACTCAAAGCATGGGTCAT 58.820 50.000 0.00 0.00 38.92 3.06
900 927 1.135199 GCACTCAAAGCATGGGTCATG 60.135 52.381 3.72 3.72 38.92 3.07
912 939 3.188786 GTCATGCGCGACCACTCC 61.189 66.667 12.10 0.00 0.00 3.85
913 940 4.451150 TCATGCGCGACCACTCCC 62.451 66.667 12.10 0.00 0.00 4.30
914 941 4.457496 CATGCGCGACCACTCCCT 62.457 66.667 12.10 0.00 0.00 4.20
915 942 4.148825 ATGCGCGACCACTCCCTC 62.149 66.667 12.10 0.00 0.00 4.30
920 947 3.744719 CGACCACTCCCTCGCGAA 61.745 66.667 11.33 0.00 0.00 4.70
921 948 2.893398 GACCACTCCCTCGCGAAT 59.107 61.111 11.33 0.00 0.00 3.34
922 949 1.721664 CGACCACTCCCTCGCGAATA 61.722 60.000 11.33 0.00 0.00 1.75
923 950 0.248949 GACCACTCCCTCGCGAATAC 60.249 60.000 11.33 0.00 0.00 1.89
924 951 0.968901 ACCACTCCCTCGCGAATACA 60.969 55.000 11.33 0.00 0.00 2.29
925 952 0.174845 CCACTCCCTCGCGAATACAA 59.825 55.000 11.33 0.00 0.00 2.41
926 953 1.202533 CCACTCCCTCGCGAATACAAT 60.203 52.381 11.33 0.00 0.00 2.71
927 954 2.550978 CACTCCCTCGCGAATACAATT 58.449 47.619 11.33 0.00 0.00 2.32
928 955 2.285220 CACTCCCTCGCGAATACAATTG 59.715 50.000 11.33 3.24 0.00 2.32
929 956 2.167693 ACTCCCTCGCGAATACAATTGA 59.832 45.455 13.59 0.00 0.00 2.57
930 957 2.540101 CTCCCTCGCGAATACAATTGAC 59.460 50.000 13.59 0.00 0.00 3.18
931 958 2.093921 TCCCTCGCGAATACAATTGACA 60.094 45.455 13.59 0.00 0.00 3.58
932 959 2.030457 CCCTCGCGAATACAATTGACAC 59.970 50.000 13.59 0.00 0.00 3.67
933 960 2.670905 CCTCGCGAATACAATTGACACA 59.329 45.455 13.59 0.00 0.00 3.72
934 961 3.309682 CCTCGCGAATACAATTGACACAT 59.690 43.478 13.59 0.00 0.00 3.21
935 962 4.257536 TCGCGAATACAATTGACACATG 57.742 40.909 13.59 0.00 0.00 3.21
936 963 2.777845 CGCGAATACAATTGACACATGC 59.222 45.455 13.59 7.73 0.00 4.06
937 964 3.108144 GCGAATACAATTGACACATGCC 58.892 45.455 13.59 0.00 0.00 4.40
938 965 3.181497 GCGAATACAATTGACACATGCCT 60.181 43.478 13.59 0.00 0.00 4.75
939 966 4.345288 CGAATACAATTGACACATGCCTG 58.655 43.478 13.59 0.00 0.00 4.85
940 967 3.788333 ATACAATTGACACATGCCTGC 57.212 42.857 13.59 0.00 0.00 4.85
941 968 1.624336 ACAATTGACACATGCCTGCT 58.376 45.000 13.59 0.00 0.00 4.24
942 969 1.965643 ACAATTGACACATGCCTGCTT 59.034 42.857 13.59 0.00 0.00 3.91
943 970 2.366266 ACAATTGACACATGCCTGCTTT 59.634 40.909 13.59 0.00 0.00 3.51
944 971 2.734606 CAATTGACACATGCCTGCTTTG 59.265 45.455 0.00 0.00 0.00 2.77
945 972 1.401761 TTGACACATGCCTGCTTTGT 58.598 45.000 0.00 0.00 0.00 2.83
946 973 2.268762 TGACACATGCCTGCTTTGTA 57.731 45.000 0.00 0.00 0.00 2.41
947 974 2.153645 TGACACATGCCTGCTTTGTAG 58.846 47.619 0.00 0.00 0.00 2.74
965 992 3.423154 CTCAAACAGCGGGCGGAC 61.423 66.667 0.00 0.00 0.00 4.79
968 995 4.344865 AAACAGCGGGCGGACCAT 62.345 61.111 0.00 0.00 40.22 3.55
969 996 3.860930 AAACAGCGGGCGGACCATT 62.861 57.895 0.00 0.00 40.22 3.16
970 997 3.860930 AACAGCGGGCGGACCATTT 62.861 57.895 0.00 0.00 40.22 2.32
971 998 3.814268 CAGCGGGCGGACCATTTG 61.814 66.667 0.00 0.00 40.22 2.32
982 1009 4.095590 CCATTTGGGTCGTGCCTT 57.904 55.556 0.00 0.00 37.43 4.35
1010 1037 3.554692 CTCACACGGCGCGATTCC 61.555 66.667 12.10 0.00 0.00 3.01
1035 1062 3.419759 CCGCGACCCAAACCGAAG 61.420 66.667 8.23 0.00 0.00 3.79
1046 1073 3.785122 AACCGAAGCCCCCACACAC 62.785 63.158 0.00 0.00 0.00 3.82
1098 1125 1.146485 CCAGCAGCTCCATCTCCAG 59.854 63.158 0.00 0.00 0.00 3.86
1114 1141 1.347707 TCCAGAATTCGTGTGCCTTCT 59.652 47.619 0.00 0.00 0.00 2.85
1147 1174 2.494918 CTCCCGAGGCGACGAATT 59.505 61.111 0.00 0.00 35.09 2.17
1155 1182 2.125106 GCGACGAATTGGGCCTCT 60.125 61.111 4.53 0.00 0.00 3.69
1156 1183 2.174319 GCGACGAATTGGGCCTCTC 61.174 63.158 4.53 0.00 0.00 3.20
1253 1280 4.579869 TCTGTCTCTGCACCTATTTTTCC 58.420 43.478 0.00 0.00 0.00 3.13
1258 1285 6.655003 TGTCTCTGCACCTATTTTTCCTTTAG 59.345 38.462 0.00 0.00 0.00 1.85
1336 1363 3.934391 GAGGTGTGGGAGCGTTCCG 62.934 68.421 12.54 0.00 45.04 4.30
1368 1395 4.680237 CGCTCTGACGGGTTGCCA 62.680 66.667 0.00 0.00 0.00 4.92
1435 1462 0.801872 GTGTCAGTTGTGTGTGTGCA 59.198 50.000 0.00 0.00 0.00 4.57
1506 1534 0.178987 ATTTGGGTGGGTTGTACGCA 60.179 50.000 0.00 0.00 38.80 5.24
1510 1538 1.674322 GGTGGGTTGTACGCATGCT 60.674 57.895 17.13 5.50 43.03 3.79
1538 1566 1.442526 GCCGGATTGCTGGTGATCTG 61.443 60.000 5.05 0.00 42.93 2.90
1554 1582 3.118629 TGATCTGCTGCTAAAGACGGAAT 60.119 43.478 0.00 0.00 0.00 3.01
1579 1863 0.681564 TGACTTTTGCCACGTTGGGT 60.682 50.000 6.23 0.00 38.19 4.51
1628 1912 7.595819 AACACTTGTTCCAGATTTCCATTTA 57.404 32.000 0.00 0.00 31.64 1.40
1719 2003 1.004745 GATTGGAAGGGGCTCTGACAA 59.995 52.381 6.48 6.48 0.00 3.18
1870 2154 0.115152 TCCACAGAGAGCAGGGAAGA 59.885 55.000 0.00 0.00 0.00 2.87
2063 2347 1.756538 CCCTGCTTTGAACAAGGTTGT 59.243 47.619 0.00 0.00 44.72 3.32
2112 2396 2.655090 TGGATGGTGAAAGTGCTGAA 57.345 45.000 0.00 0.00 0.00 3.02
2141 2425 0.371645 GGCGCTGAAGACGATTCAAG 59.628 55.000 7.64 7.29 0.00 3.02
2206 2491 1.336702 TGTCATGAACCGCCATTTTGC 60.337 47.619 0.00 0.00 0.00 3.68
2230 2515 7.066163 TGCGATCTGACATAGTTTTCAATTGAT 59.934 33.333 9.40 0.00 0.00 2.57
2270 2555 3.665745 AGTGCAATGGTTTTAGCCTTG 57.334 42.857 0.00 0.00 0.00 3.61
2390 2675 5.728637 AGGATATCATGCTGTATGTTCGA 57.271 39.130 4.83 0.00 38.01 3.71
2403 2688 4.572795 TGTATGTTCGAAGCACAAAACAGA 59.427 37.500 0.00 0.00 35.30 3.41
2439 2724 7.781324 ACTCCATTCAATCCAAAATAAGTGT 57.219 32.000 0.00 0.00 0.00 3.55
2441 2726 6.851609 TCCATTCAATCCAAAATAAGTGTCG 58.148 36.000 0.00 0.00 0.00 4.35
2464 2749 4.200838 AGTTTTGAACTGGGGTTTGTTG 57.799 40.909 0.00 0.00 41.01 3.33
2491 2776 4.100963 ACTGCGTCACTTATTATGGATCCA 59.899 41.667 18.88 18.88 0.00 3.41
2492 2777 5.029807 TGCGTCACTTATTATGGATCCAA 57.970 39.130 20.67 2.92 0.00 3.53
2580 2865 3.202818 TGCCATCACATTAGGGACTCATT 59.797 43.478 0.00 0.00 41.75 2.57
2589 2874 7.835682 TCACATTAGGGACTCATTCATCAATTT 59.164 33.333 0.00 0.00 41.75 1.82
2609 2894 2.154567 AGGGGTAGACATTGCTACGA 57.845 50.000 0.00 0.00 41.26 3.43
2615 2900 5.235831 GGGGTAGACATTGCTACGATTAAAC 59.764 44.000 0.00 0.00 41.26 2.01
2621 2906 7.871853 AGACATTGCTACGATTAAACAGTTTT 58.128 30.769 3.25 0.00 0.00 2.43
2688 3059 7.876582 GGTTACCAGTTAGTTAATATGGCCTAG 59.123 40.741 3.32 0.00 34.24 3.02
2692 3063 7.234988 ACCAGTTAGTTAATATGGCCTAGGTAG 59.765 40.741 11.31 0.00 34.24 3.18
2715 3086 5.527582 AGTTCGAATATAGTTTCACATGGCC 59.472 40.000 0.00 0.00 0.00 5.36
2788 3160 8.664211 ATCTCTATGCATATAATGACATGCTG 57.336 34.615 6.92 0.00 46.19 4.41
2794 3166 4.672024 GCATATAATGACATGCTGCAGCTC 60.672 45.833 36.61 26.48 43.38 4.09
2863 3235 2.981921 AGATGATGCTATGAGGGACCA 58.018 47.619 0.00 0.00 0.00 4.02
2882 3254 6.016777 GGGACCAGCAATATCTTATTTGTCAG 60.017 42.308 0.00 0.00 0.00 3.51
2959 3331 6.493115 TGATCCAATCCAATACACAAAACAGT 59.507 34.615 0.00 0.00 0.00 3.55
3005 3377 8.208903 TGCTACTTCTTTAAGTCCTTGTAGTTT 58.791 33.333 0.00 0.00 42.42 2.66
3100 3472 4.221924 TGTGTAATGACAGGCTACAGCTAA 59.778 41.667 0.54 0.00 41.70 3.09
3106 3478 1.550976 ACAGGCTACAGCTAAGTCCAC 59.449 52.381 0.54 0.00 41.70 4.02
3149 3521 5.007430 CGCATCACTGAAAATTCTGCTCTAT 59.993 40.000 0.57 0.00 0.00 1.98
3193 3566 2.744741 TGTCTTGTTTGTCGCTTTGTCA 59.255 40.909 0.00 0.00 0.00 3.58
3206 3579 3.544834 CGCTTTGTCAGAGTTGTCAGTTG 60.545 47.826 0.00 0.00 0.00 3.16
3223 3596 1.461127 GTTGTGCTACTTGGAAGCTCG 59.539 52.381 0.00 0.00 40.73 5.03
3347 3720 1.527370 GGTATCTGGTGGGACTGCC 59.473 63.158 0.00 0.00 0.00 4.85
3386 3759 5.355071 TGCATATGAGGTTTGTTTGCTCTAG 59.645 40.000 6.97 0.00 0.00 2.43
3608 3983 1.211212 TCTGATCAGTGAGCATTGGGG 59.789 52.381 21.92 0.00 0.00 4.96
3827 4202 0.690192 TGGAATTCGCTGGGACAAGA 59.310 50.000 0.00 0.00 38.70 3.02
4234 4631 5.497464 TTTCATGACATAACTCAGGGTCA 57.503 39.130 0.00 0.00 43.61 4.02
4251 4648 7.974504 TCAGGGTCAATAGTCTTCTACTTTTT 58.025 34.615 0.00 0.00 39.80 1.94
4396 4803 7.240616 AGGCCTGATATCTTATTTTCCCTATGT 59.759 37.037 3.11 0.00 0.00 2.29
4397 4804 7.890655 GGCCTGATATCTTATTTTCCCTATGTT 59.109 37.037 3.98 0.00 0.00 2.71
4553 4960 8.420222 TCATTGGCATACACCCTTATATTTTTG 58.580 33.333 0.00 0.00 0.00 2.44
4661 5068 7.016153 TCACTTAGGTCTGTTCCAATGTTAT 57.984 36.000 0.00 0.00 0.00 1.89
4735 5142 1.968493 TGGTTACCTCTCCGGATATGC 59.032 52.381 3.57 0.00 36.31 3.14
4860 5267 5.068855 TGAAAGTTTGATTGAATCACCTGCA 59.931 36.000 7.48 6.57 39.39 4.41
4925 5332 4.988540 TGCTGTACTTTCACTGTCATGTAC 59.011 41.667 0.00 0.00 0.00 2.90
4926 5333 5.221441 TGCTGTACTTTCACTGTCATGTACT 60.221 40.000 0.00 0.00 33.59 2.73
4927 5334 5.346281 GCTGTACTTTCACTGTCATGTACTC 59.654 44.000 0.00 0.00 33.59 2.59
4928 5335 5.779922 TGTACTTTCACTGTCATGTACTCC 58.220 41.667 0.00 0.00 33.59 3.85
4929 5336 4.273148 ACTTTCACTGTCATGTACTCCC 57.727 45.455 0.00 0.00 0.00 4.30
4930 5337 3.904339 ACTTTCACTGTCATGTACTCCCT 59.096 43.478 0.00 0.00 0.00 4.20
4931 5338 4.021016 ACTTTCACTGTCATGTACTCCCTC 60.021 45.833 0.00 0.00 0.00 4.30
4932 5339 2.457598 TCACTGTCATGTACTCCCTCC 58.542 52.381 0.00 0.00 0.00 4.30
4933 5340 2.043115 TCACTGTCATGTACTCCCTCCT 59.957 50.000 0.00 0.00 0.00 3.69
4934 5341 2.834549 CACTGTCATGTACTCCCTCCTT 59.165 50.000 0.00 0.00 0.00 3.36
4935 5342 3.100671 ACTGTCATGTACTCCCTCCTTC 58.899 50.000 0.00 0.00 0.00 3.46
4936 5343 2.432510 CTGTCATGTACTCCCTCCTTCC 59.567 54.545 0.00 0.00 0.00 3.46
4937 5344 1.409427 GTCATGTACTCCCTCCTTCCG 59.591 57.143 0.00 0.00 0.00 4.30
4938 5345 1.286849 TCATGTACTCCCTCCTTCCGA 59.713 52.381 0.00 0.00 0.00 4.55
4939 5346 2.108168 CATGTACTCCCTCCTTCCGAA 58.892 52.381 0.00 0.00 0.00 4.30
4940 5347 2.314071 TGTACTCCCTCCTTCCGAAA 57.686 50.000 0.00 0.00 0.00 3.46
4941 5348 2.612000 TGTACTCCCTCCTTCCGAAAA 58.388 47.619 0.00 0.00 0.00 2.29
4942 5349 3.178865 TGTACTCCCTCCTTCCGAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
4943 5350 4.355549 TGTACTCCCTCCTTCCGAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
4944 5351 3.908643 ACTCCCTCCTTCCGAAAATAC 57.091 47.619 0.00 0.00 0.00 1.89
4945 5352 3.451890 ACTCCCTCCTTCCGAAAATACT 58.548 45.455 0.00 0.00 0.00 2.12
4946 5353 3.844804 ACTCCCTCCTTCCGAAAATACTT 59.155 43.478 0.00 0.00 0.00 2.24
4947 5354 4.192317 CTCCCTCCTTCCGAAAATACTTG 58.808 47.826 0.00 0.00 0.00 3.16
4948 5355 3.585732 TCCCTCCTTCCGAAAATACTTGT 59.414 43.478 0.00 0.00 0.00 3.16
4949 5356 3.939592 CCCTCCTTCCGAAAATACTTGTC 59.060 47.826 0.00 0.00 0.00 3.18
4950 5357 4.564821 CCCTCCTTCCGAAAATACTTGTCA 60.565 45.833 0.00 0.00 0.00 3.58
4951 5358 5.186198 CCTCCTTCCGAAAATACTTGTCAT 58.814 41.667 0.00 0.00 0.00 3.06
4952 5359 5.294552 CCTCCTTCCGAAAATACTTGTCATC 59.705 44.000 0.00 0.00 0.00 2.92
4953 5360 5.800296 TCCTTCCGAAAATACTTGTCATCA 58.200 37.500 0.00 0.00 0.00 3.07
4954 5361 6.234920 TCCTTCCGAAAATACTTGTCATCAA 58.765 36.000 0.00 0.00 0.00 2.57
4955 5362 6.712998 TCCTTCCGAAAATACTTGTCATCAAA 59.287 34.615 0.00 0.00 32.87 2.69
4956 5363 7.229707 TCCTTCCGAAAATACTTGTCATCAAAA 59.770 33.333 0.00 0.00 32.87 2.44
4957 5364 8.028938 CCTTCCGAAAATACTTGTCATCAAAAT 58.971 33.333 0.00 0.00 32.87 1.82
4958 5365 8.741101 TTCCGAAAATACTTGTCATCAAAATG 57.259 30.769 0.00 0.00 32.87 2.32
4959 5366 7.312154 TCCGAAAATACTTGTCATCAAAATGG 58.688 34.615 0.00 0.00 33.42 3.16
4960 5367 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
4961 5368 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
4969 5376 8.096414 ACTTGTCATCAAAATGGATAAAAAGGG 58.904 33.333 0.00 0.00 33.42 3.95
4970 5377 6.945218 TGTCATCAAAATGGATAAAAAGGGG 58.055 36.000 0.00 0.00 33.42 4.79
4971 5378 6.500049 TGTCATCAAAATGGATAAAAAGGGGT 59.500 34.615 0.00 0.00 33.42 4.95
4972 5379 6.818142 GTCATCAAAATGGATAAAAAGGGGTG 59.182 38.462 0.00 0.00 33.42 4.61
4973 5380 6.500049 TCATCAAAATGGATAAAAAGGGGTGT 59.500 34.615 0.00 0.00 33.42 4.16
4974 5381 7.676043 TCATCAAAATGGATAAAAAGGGGTGTA 59.324 33.333 0.00 0.00 33.42 2.90
4975 5382 8.485392 CATCAAAATGGATAAAAAGGGGTGTAT 58.515 33.333 0.00 0.00 0.00 2.29
4976 5383 8.073467 TCAAAATGGATAAAAAGGGGTGTATC 57.927 34.615 0.00 0.00 0.00 2.24
4977 5384 7.898636 TCAAAATGGATAAAAAGGGGTGTATCT 59.101 33.333 0.00 0.00 0.00 1.98
4978 5385 9.196139 CAAAATGGATAAAAAGGGGTGTATCTA 57.804 33.333 0.00 0.00 0.00 1.98
4979 5386 8.996651 AAATGGATAAAAAGGGGTGTATCTAG 57.003 34.615 0.00 0.00 0.00 2.43
4980 5387 7.947782 ATGGATAAAAAGGGGTGTATCTAGA 57.052 36.000 0.00 0.00 0.00 2.43
4981 5388 7.758820 TGGATAAAAAGGGGTGTATCTAGAA 57.241 36.000 0.00 0.00 0.00 2.10
4982 5389 7.571025 TGGATAAAAAGGGGTGTATCTAGAAC 58.429 38.462 0.00 0.00 0.00 3.01
4983 5390 7.404980 TGGATAAAAAGGGGTGTATCTAGAACT 59.595 37.037 0.00 0.00 0.00 3.01
4984 5391 8.931568 GGATAAAAAGGGGTGTATCTAGAACTA 58.068 37.037 0.00 0.00 0.00 2.24
4992 5399 9.503369 AGGGGTGTATCTAGAACTAAAATAAGT 57.497 33.333 0.00 0.00 0.00 2.24
4993 5400 9.761504 GGGGTGTATCTAGAACTAAAATAAGTC 57.238 37.037 0.00 0.00 0.00 3.01
5029 5436 9.918630 CTTCTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
5036 5443 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
5037 5444 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
5038 5445 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
5039 5446 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
5040 5447 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
5041 5448 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
5042 5449 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
5043 5450 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
5044 5451 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
5045 5452 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5046 5453 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
5047 5454 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
5048 5455 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
5049 5456 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
5100 5507 7.857404 TGTTATGAACCTTTTCCCCAAATTA 57.143 32.000 0.00 0.00 0.00 1.40
5244 5651 4.997395 CCTATGAAGCAGCGGTAATTACAT 59.003 41.667 17.16 1.93 0.00 2.29
5254 5661 7.228507 AGCAGCGGTAATTACATTAATTGATGA 59.771 33.333 16.43 0.00 38.70 2.92
5322 5729 8.934023 TTGGACTTCTGATACCTGTTTTTAAT 57.066 30.769 0.00 0.00 0.00 1.40
5346 5753 4.039245 TGGTAATTCCAAAATTCGTTGCCA 59.961 37.500 0.00 0.00 44.12 4.92
5347 5754 4.991687 GGTAATTCCAAAATTCGTTGCCAA 59.008 37.500 0.00 0.00 36.49 4.52
5348 5755 5.107259 GGTAATTCCAAAATTCGTTGCCAAC 60.107 40.000 0.00 0.00 36.49 3.77
5349 5756 2.517650 TCCAAAATTCGTTGCCAACC 57.482 45.000 1.21 0.00 0.00 3.77
5350 5757 1.135867 CCAAAATTCGTTGCCAACCG 58.864 50.000 1.21 0.00 0.00 4.44
5389 5798 1.069090 ACGAAGCTCCACGCAAAGA 59.931 52.632 7.61 0.00 42.61 2.52
5478 5887 6.408428 GTTAATTGTCGTATTACTGCTTCCG 58.592 40.000 0.00 0.00 0.00 4.30
5537 5946 6.866480 TGTTACACCTATTACCCGAGTTTAG 58.134 40.000 0.00 0.00 0.00 1.85
5710 6119 2.301787 CTTTCAGTTTGCGCTTCTTCG 58.698 47.619 9.73 0.00 0.00 3.79
5739 6148 6.200286 ACACATATTTCTTTGCGTAGTATCCG 59.800 38.462 0.00 0.00 0.00 4.18
5761 6170 8.338072 TCCGTGCCTTTACTTTTTGAAATATA 57.662 30.769 0.00 0.00 0.00 0.86
5785 6194 4.038642 TCATTGTCAGGCCCTTTGTTTAAC 59.961 41.667 0.00 0.00 0.00 2.01
5788 6197 1.950909 TCAGGCCCTTTGTTTAACACG 59.049 47.619 0.00 0.00 0.00 4.49
5795 6204 4.496360 CCCTTTGTTTAACACGTTGGTTT 58.504 39.130 0.00 0.00 32.29 3.27
5834 6243 7.637631 TCTGCAATAGTTTGGCAATGTATTA 57.362 32.000 0.00 0.00 33.22 0.98
5977 6386 2.358939 CTTCTTCAGCAAACCATGGC 57.641 50.000 13.04 0.00 0.00 4.40
5978 6387 0.968405 TTCTTCAGCAAACCATGGCC 59.032 50.000 13.04 0.00 0.00 5.36
5979 6388 1.213537 CTTCAGCAAACCATGGCCG 59.786 57.895 13.04 0.82 0.00 6.13
5981 6390 0.250945 TTCAGCAAACCATGGCCGTA 60.251 50.000 13.04 0.00 0.00 4.02
5983 6392 0.101040 CAGCAAACCATGGCCGTATG 59.899 55.000 13.04 5.08 0.00 2.39
5989 6398 1.453745 CCATGGCCGTATGGTGCTT 60.454 57.895 13.00 0.00 42.16 3.91
5990 6399 1.447317 CCATGGCCGTATGGTGCTTC 61.447 60.000 13.00 0.00 42.16 3.86
5991 6400 0.464373 CATGGCCGTATGGTGCTTCT 60.464 55.000 0.00 0.00 37.67 2.85
5992 6401 0.179045 ATGGCCGTATGGTGCTTCTC 60.179 55.000 0.00 0.00 37.67 2.87
5993 6402 1.264749 TGGCCGTATGGTGCTTCTCT 61.265 55.000 2.17 0.00 37.67 3.10
5995 6404 0.530870 GCCGTATGGTGCTTCTCTCC 60.531 60.000 2.17 0.00 37.67 3.71
6000 7466 0.692419 ATGGTGCTTCTCTCCGGGAT 60.692 55.000 0.00 0.00 0.00 3.85
6021 7487 5.337652 GGATGGAGTAGTAGATTACATGGCC 60.338 48.000 0.00 0.00 0.00 5.36
6033 7499 0.748005 ACATGGCCGTATGGTGCTTC 60.748 55.000 0.00 0.00 37.67 3.86
6052 7518 3.095912 TCTCTCCGGAATTCAGTACCA 57.904 47.619 5.23 0.00 0.00 3.25
6142 7608 4.948847 TGTACATTGCTTCGATCTGCTAT 58.051 39.130 0.00 2.93 0.00 2.97
6173 7639 3.866910 TGTCAGTTGACCAACGTAACTTC 59.133 43.478 9.60 0.00 45.50 3.01
6284 7750 5.182001 AGCAGAAGTTGATGTGATGGTTAAC 59.818 40.000 0.00 0.00 0.00 2.01
6373 7839 8.910666 CACACGAAATTTGCATTTATAGTTTGA 58.089 29.630 0.00 0.00 32.35 2.69
6413 7879 4.274459 GCTGTTGGGCAGTCATAATCTTAG 59.726 45.833 0.00 0.00 46.64 2.18
6415 7881 6.061022 TGTTGGGCAGTCATAATCTTAGAA 57.939 37.500 0.00 0.00 0.00 2.10
6416 7882 6.480763 TGTTGGGCAGTCATAATCTTAGAAA 58.519 36.000 0.00 0.00 0.00 2.52
6521 7987 1.143329 TCCCCCACCCTAACATGCAA 61.143 55.000 0.00 0.00 0.00 4.08
6554 8020 6.129874 AGGGATTTTCCTATGAGGTTTAAGC 58.870 40.000 0.00 0.00 36.57 3.09
6555 8021 6.068794 AGGGATTTTCCTATGAGGTTTAAGCT 60.069 38.462 0.00 0.00 36.57 3.74
6556 8022 6.263392 GGGATTTTCCTATGAGGTTTAAGCTC 59.737 42.308 16.24 16.24 38.73 4.09
6557 8023 6.263392 GGATTTTCCTATGAGGTTTAAGCTCC 59.737 42.308 19.58 4.57 36.37 4.70
6558 8024 6.388619 TTTTCCTATGAGGTTTAAGCTCCT 57.611 37.500 19.58 13.26 41.77 3.69
6560 8026 3.967987 TCCTATGAGGTTTAAGCTCCTCC 59.032 47.826 19.58 3.44 46.76 4.30
6561 8027 3.970640 CCTATGAGGTTTAAGCTCCTCCT 59.029 47.826 19.58 8.90 46.76 3.69
6562 8028 4.039852 CCTATGAGGTTTAAGCTCCTCCTC 59.960 50.000 19.58 15.26 46.76 3.71
6564 8030 2.834549 TGAGGTTTAAGCTCCTCCTCAG 59.165 50.000 19.58 0.00 46.20 3.35
6565 8031 2.169561 GAGGTTTAAGCTCCTCCTCAGG 59.830 54.545 12.62 0.00 42.96 3.86
6572 8038 4.346049 TCCTCCTCAGGAAGCTCG 57.654 61.111 0.00 0.00 46.84 5.03
6573 8039 1.380515 TCCTCCTCAGGAAGCTCGG 60.381 63.158 0.00 0.00 46.84 4.63
6574 8040 1.380515 CCTCCTCAGGAAGCTCGGA 60.381 63.158 0.00 0.00 43.65 4.55
6575 8041 1.671901 CCTCCTCAGGAAGCTCGGAC 61.672 65.000 0.00 0.00 43.65 4.79
6576 8042 1.671901 CTCCTCAGGAAGCTCGGACC 61.672 65.000 0.00 0.00 0.00 4.46
6577 8043 1.984570 CCTCAGGAAGCTCGGACCA 60.985 63.158 0.00 0.00 0.00 4.02
6578 8044 1.333636 CCTCAGGAAGCTCGGACCAT 61.334 60.000 0.00 0.00 0.00 3.55
6579 8045 0.539051 CTCAGGAAGCTCGGACCATT 59.461 55.000 0.00 0.00 0.00 3.16
6580 8046 0.250234 TCAGGAAGCTCGGACCATTG 59.750 55.000 0.00 0.00 0.00 2.82
6581 8047 0.036010 CAGGAAGCTCGGACCATTGT 60.036 55.000 0.00 0.00 0.00 2.71
6582 8048 0.036010 AGGAAGCTCGGACCATTGTG 60.036 55.000 0.00 0.00 0.00 3.33
6583 8049 0.036388 GGAAGCTCGGACCATTGTGA 60.036 55.000 0.00 0.00 0.00 3.58
6584 8050 1.407437 GGAAGCTCGGACCATTGTGAT 60.407 52.381 0.00 0.00 0.00 3.06
6585 8051 1.667724 GAAGCTCGGACCATTGTGATG 59.332 52.381 0.00 0.00 0.00 3.07
6586 8052 0.615331 AGCTCGGACCATTGTGATGT 59.385 50.000 0.00 0.00 0.00 3.06
6587 8053 0.729116 GCTCGGACCATTGTGATGTG 59.271 55.000 0.00 0.00 0.00 3.21
6588 8054 1.372582 CTCGGACCATTGTGATGTGG 58.627 55.000 0.00 0.00 41.35 4.17
6589 8055 0.035534 TCGGACCATTGTGATGTGGG 60.036 55.000 0.00 0.00 39.86 4.61
6590 8056 1.031571 CGGACCATTGTGATGTGGGG 61.032 60.000 0.00 0.00 39.86 4.96
6591 8057 0.039618 GGACCATTGTGATGTGGGGT 59.960 55.000 0.00 0.00 39.86 4.95
6592 8058 1.283613 GGACCATTGTGATGTGGGGTA 59.716 52.381 0.00 0.00 39.86 3.69
6593 8059 2.091885 GGACCATTGTGATGTGGGGTAT 60.092 50.000 0.00 0.00 39.86 2.73
6594 8060 3.627237 GGACCATTGTGATGTGGGGTATT 60.627 47.826 0.00 0.00 39.86 1.89
6606 8072 3.007635 GTGGGGTATTGTGTCTAGTTGC 58.992 50.000 0.00 0.00 0.00 4.17
6615 8081 6.734104 ATTGTGTCTAGTTGCTTGATCTTC 57.266 37.500 0.00 0.00 0.00 2.87
6627 8093 4.958581 TGCTTGATCTTCTGGATGAGTAGA 59.041 41.667 0.00 0.00 34.33 2.59
6676 8142 8.866956 CCTAGTTCATGATCTTTTCAAATTTGC 58.133 33.333 13.54 0.00 38.03 3.68
6679 8145 8.145767 AGTTCATGATCTTTTCAAATTTGCAGA 58.854 29.630 13.54 13.60 38.03 4.26
6680 8146 8.767085 GTTCATGATCTTTTCAAATTTGCAGAA 58.233 29.630 13.54 5.49 38.03 3.02
6681 8147 9.496873 TTCATGATCTTTTCAAATTTGCAGAAT 57.503 25.926 13.54 3.40 38.03 2.40
6682 8148 9.496873 TCATGATCTTTTCAAATTTGCAGAATT 57.503 25.926 13.54 1.43 38.03 2.17
6691 8157 3.986996 ATTTGCAGAATTTGAAGGGGG 57.013 42.857 0.00 0.00 0.00 5.40
6797 8264 9.154847 TGAGATTCACAAGTATAACATGAACAG 57.845 33.333 0.00 0.00 32.42 3.16
6799 8266 9.507329 AGATTCACAAGTATAACATGAACAGTT 57.493 29.630 0.00 0.00 32.42 3.16
6804 8271 9.214957 CACAAGTATAACATGAACAGTTAAGGA 57.785 33.333 0.00 0.00 35.33 3.36
6846 8314 8.533569 AAAGGTTCTTCTCAAATCCAAAGTAA 57.466 30.769 0.00 0.00 0.00 2.24
6857 8325 9.231297 CTCAAATCCAAAGTAAATGAGGTCTTA 57.769 33.333 0.00 0.00 31.50 2.10
6897 8365 2.317900 TCTCCCTTGGGAGGTCTTGATA 59.682 50.000 29.37 9.98 41.85 2.15
6942 8410 3.783082 CCCTTAGGAGGTCTTGATTCCTT 59.217 47.826 0.00 0.00 41.85 3.36
6944 8413 5.071115 CCCTTAGGAGGTCTTGATTCCTTAG 59.929 48.000 0.00 10.47 41.85 2.18
6969 8439 2.553247 GGAGGTACAAGGAGCAAAGCTT 60.553 50.000 0.00 0.00 39.88 3.74
6988 8463 8.890718 CAAAGCTTTCTCAAATGATCTCATCTA 58.109 33.333 9.23 0.00 35.10 1.98
6989 8464 8.436046 AAGCTTTCTCAAATGATCTCATCTAC 57.564 34.615 0.00 0.00 35.10 2.59
6990 8465 7.794041 AGCTTTCTCAAATGATCTCATCTACT 58.206 34.615 0.00 0.00 35.10 2.57
6991 8466 8.266473 AGCTTTCTCAAATGATCTCATCTACTT 58.734 33.333 0.00 0.00 35.10 2.24
6992 8467 8.891720 GCTTTCTCAAATGATCTCATCTACTTT 58.108 33.333 0.00 0.00 35.10 2.66
7045 8520 1.113517 TATAGGTGGCTGGAGGCGAC 61.114 60.000 0.00 0.00 46.62 5.19
7122 8615 1.373812 GCACGGGTTAAGTGGACCT 59.626 57.895 0.00 0.00 39.80 3.85
7232 8743 3.318557 CACGGGGTATCTAGAAACTCTCC 59.681 52.174 0.00 0.00 0.00 3.71
7234 8745 3.746751 CGGGGTATCTAGAAACTCTCCGA 60.747 52.174 17.32 0.00 36.30 4.55
7244 8755 2.062971 AACTCTCCGAATAGGCCGTA 57.937 50.000 0.00 0.00 40.77 4.02
7265 8776 0.039618 GCATGGGGTCCAAAAGAGGA 59.960 55.000 0.00 0.00 36.95 3.71
7335 8852 1.067565 GTCATCCGTGCAGTCTTCTCA 60.068 52.381 0.00 0.00 0.00 3.27
7344 8861 3.683822 GTGCAGTCTTCTCATCCTTCTTG 59.316 47.826 0.00 0.00 0.00 3.02
7345 8862 2.677337 GCAGTCTTCTCATCCTTCTTGC 59.323 50.000 0.00 0.00 0.00 4.01
7346 8863 3.867600 GCAGTCTTCTCATCCTTCTTGCA 60.868 47.826 0.00 0.00 0.00 4.08
7347 8864 3.683822 CAGTCTTCTCATCCTTCTTGCAC 59.316 47.826 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 45 9.594478 AATTCGTGTAGAAAGTTTTTCCATTTT 57.406 25.926 0.00 0.00 42.91 1.82
132 135 3.669023 GCATTCGAAAGGCTCTGACTTTG 60.669 47.826 15.51 0.86 41.43 2.77
138 141 0.098376 GCTGCATTCGAAAGGCTCTG 59.902 55.000 21.10 13.98 0.00 3.35
190 193 5.295950 CCTATCCAACAGACATCATGACTC 58.704 45.833 0.00 0.00 0.00 3.36
193 196 3.181451 GCCCTATCCAACAGACATCATGA 60.181 47.826 0.00 0.00 0.00 3.07
205 216 0.182537 CGATTGGTGGCCCTATCCAA 59.817 55.000 16.95 16.95 43.83 3.53
234 245 0.178967 TCAGGGCCAAATTGCTCACA 60.179 50.000 6.18 0.00 32.74 3.58
241 252 1.197812 GCCATCTTCAGGGCCAAATT 58.802 50.000 6.18 0.00 44.53 1.82
320 332 4.219507 TCGCATAAAAGATGAGCCCAAAAA 59.780 37.500 0.00 0.00 0.00 1.94
336 350 1.268352 GCCACAAACAACCTCGCATAA 59.732 47.619 0.00 0.00 0.00 1.90
337 351 0.878416 GCCACAAACAACCTCGCATA 59.122 50.000 0.00 0.00 0.00 3.14
340 354 2.193536 AGGCCACAAACAACCTCGC 61.194 57.895 5.01 0.00 0.00 5.03
438 452 5.235616 TCACGTACAAGAAAATGACTCCAAC 59.764 40.000 0.00 0.00 0.00 3.77
460 474 6.097839 GGTATATAATAGGCGGATGGACTTCA 59.902 42.308 0.00 0.00 34.13 3.02
832 859 5.415701 TGGTTTCTCTTCATACCAGAAATGC 59.584 40.000 0.00 0.00 38.19 3.56
833 860 7.452880 TTGGTTTCTCTTCATACCAGAAATG 57.547 36.000 0.00 0.00 41.35 2.32
834 861 6.151817 GCTTGGTTTCTCTTCATACCAGAAAT 59.848 38.462 0.00 0.00 41.35 2.17
835 862 5.473504 GCTTGGTTTCTCTTCATACCAGAAA 59.526 40.000 0.00 0.00 41.35 2.52
836 863 5.003804 GCTTGGTTTCTCTTCATACCAGAA 58.996 41.667 0.00 0.00 41.35 3.02
837 864 4.041567 TGCTTGGTTTCTCTTCATACCAGA 59.958 41.667 0.00 0.00 41.35 3.86
838 865 4.326826 TGCTTGGTTTCTCTTCATACCAG 58.673 43.478 0.00 0.00 41.35 4.00
839 866 4.365514 TGCTTGGTTTCTCTTCATACCA 57.634 40.909 0.00 0.00 38.82 3.25
840 867 4.439289 GCATGCTTGGTTTCTCTTCATACC 60.439 45.833 11.37 0.00 0.00 2.73
841 868 4.439289 GGCATGCTTGGTTTCTCTTCATAC 60.439 45.833 18.92 0.00 0.00 2.39
842 869 3.696051 GGCATGCTTGGTTTCTCTTCATA 59.304 43.478 18.92 0.00 0.00 2.15
843 870 2.494870 GGCATGCTTGGTTTCTCTTCAT 59.505 45.455 18.92 0.00 0.00 2.57
844 871 1.888512 GGCATGCTTGGTTTCTCTTCA 59.111 47.619 18.92 0.00 0.00 3.02
845 872 2.165998 AGGCATGCTTGGTTTCTCTTC 58.834 47.619 18.92 0.00 0.00 2.87
846 873 2.299326 AGGCATGCTTGGTTTCTCTT 57.701 45.000 18.92 0.00 0.00 2.85
847 874 2.356535 CCTAGGCATGCTTGGTTTCTCT 60.357 50.000 18.92 5.09 0.00 3.10
848 875 2.019984 CCTAGGCATGCTTGGTTTCTC 58.980 52.381 18.92 0.00 0.00 2.87
849 876 1.341383 CCCTAGGCATGCTTGGTTTCT 60.341 52.381 18.92 6.63 0.00 2.52
850 877 1.106285 CCCTAGGCATGCTTGGTTTC 58.894 55.000 18.92 0.00 0.00 2.78
851 878 3.288099 CCCTAGGCATGCTTGGTTT 57.712 52.632 18.92 0.00 0.00 3.27
863 890 0.762082 TGCAGAGAGGATGCCCTAGG 60.762 60.000 0.06 0.06 44.53 3.02
864 891 0.392336 GTGCAGAGAGGATGCCCTAG 59.608 60.000 0.00 0.00 44.53 3.02
865 892 0.031716 AGTGCAGAGAGGATGCCCTA 60.032 55.000 0.00 0.00 44.53 3.53
867 894 1.145819 GAGTGCAGAGAGGATGCCC 59.854 63.158 0.00 0.00 43.18 5.36
868 895 0.251354 TTGAGTGCAGAGAGGATGCC 59.749 55.000 0.00 0.00 43.18 4.40
869 896 2.008329 CTTTGAGTGCAGAGAGGATGC 58.992 52.381 0.00 0.00 44.11 3.91
870 897 2.008329 GCTTTGAGTGCAGAGAGGATG 58.992 52.381 0.00 0.00 0.00 3.51
871 898 1.627329 TGCTTTGAGTGCAGAGAGGAT 59.373 47.619 0.00 0.00 35.31 3.24
872 899 1.051008 TGCTTTGAGTGCAGAGAGGA 58.949 50.000 0.00 0.00 35.31 3.71
873 900 1.738350 CATGCTTTGAGTGCAGAGAGG 59.262 52.381 0.00 0.00 44.04 3.69
874 901 1.738350 CCATGCTTTGAGTGCAGAGAG 59.262 52.381 0.00 0.00 44.04 3.20
875 902 1.612462 CCCATGCTTTGAGTGCAGAGA 60.612 52.381 0.00 0.00 44.04 3.10
876 903 0.809385 CCCATGCTTTGAGTGCAGAG 59.191 55.000 0.00 0.00 44.04 3.35
877 904 0.111061 ACCCATGCTTTGAGTGCAGA 59.889 50.000 0.00 0.00 44.04 4.26
878 905 0.524862 GACCCATGCTTTGAGTGCAG 59.475 55.000 0.00 0.00 44.04 4.41
879 906 0.178995 TGACCCATGCTTTGAGTGCA 60.179 50.000 0.00 0.00 44.95 4.57
880 907 1.135199 CATGACCCATGCTTTGAGTGC 60.135 52.381 0.00 0.00 35.02 4.40
881 908 2.933495 CATGACCCATGCTTTGAGTG 57.067 50.000 0.00 0.00 35.02 3.51
895 922 3.188786 GGAGTGGTCGCGCATGAC 61.189 66.667 8.75 7.64 38.17 3.06
896 923 4.451150 GGGAGTGGTCGCGCATGA 62.451 66.667 8.75 0.00 0.00 3.07
897 924 4.457496 AGGGAGTGGTCGCGCATG 62.457 66.667 8.75 0.00 40.58 4.06
898 925 4.148825 GAGGGAGTGGTCGCGCAT 62.149 66.667 8.75 0.00 40.58 4.73
903 930 1.721664 TATTCGCGAGGGAGTGGTCG 61.722 60.000 9.59 0.00 39.25 4.79
904 931 0.248949 GTATTCGCGAGGGAGTGGTC 60.249 60.000 9.59 0.00 0.00 4.02
905 932 0.968901 TGTATTCGCGAGGGAGTGGT 60.969 55.000 9.59 0.00 0.00 4.16
906 933 0.174845 TTGTATTCGCGAGGGAGTGG 59.825 55.000 9.59 0.00 0.00 4.00
907 934 2.225068 ATTGTATTCGCGAGGGAGTG 57.775 50.000 9.59 0.00 0.00 3.51
908 935 2.167693 TCAATTGTATTCGCGAGGGAGT 59.832 45.455 9.59 0.00 0.00 3.85
909 936 2.540101 GTCAATTGTATTCGCGAGGGAG 59.460 50.000 9.59 0.00 0.00 4.30
910 937 2.093921 TGTCAATTGTATTCGCGAGGGA 60.094 45.455 9.59 0.00 0.00 4.20
911 938 2.030457 GTGTCAATTGTATTCGCGAGGG 59.970 50.000 9.59 0.00 0.00 4.30
912 939 2.670905 TGTGTCAATTGTATTCGCGAGG 59.329 45.455 9.59 0.00 0.00 4.63
913 940 3.989705 TGTGTCAATTGTATTCGCGAG 57.010 42.857 9.59 0.00 0.00 5.03
914 941 3.485051 GCATGTGTCAATTGTATTCGCGA 60.485 43.478 3.71 3.71 0.00 5.87
915 942 2.777845 GCATGTGTCAATTGTATTCGCG 59.222 45.455 0.00 0.00 0.00 5.87
916 943 3.108144 GGCATGTGTCAATTGTATTCGC 58.892 45.455 5.13 3.02 0.00 4.70
917 944 4.345288 CAGGCATGTGTCAATTGTATTCG 58.655 43.478 5.13 0.00 0.00 3.34
918 945 4.107622 GCAGGCATGTGTCAATTGTATTC 58.892 43.478 5.13 0.00 0.00 1.75
919 946 3.765511 AGCAGGCATGTGTCAATTGTATT 59.234 39.130 5.13 0.00 0.00 1.89
920 947 3.359033 AGCAGGCATGTGTCAATTGTAT 58.641 40.909 5.13 0.00 0.00 2.29
921 948 2.794103 AGCAGGCATGTGTCAATTGTA 58.206 42.857 5.13 0.00 0.00 2.41
922 949 1.624336 AGCAGGCATGTGTCAATTGT 58.376 45.000 5.13 0.00 0.00 2.71
923 950 2.734606 CAAAGCAGGCATGTGTCAATTG 59.265 45.455 0.00 0.00 0.00 2.32
924 951 2.366266 ACAAAGCAGGCATGTGTCAATT 59.634 40.909 0.00 0.00 0.00 2.32
925 952 1.965643 ACAAAGCAGGCATGTGTCAAT 59.034 42.857 0.00 0.00 0.00 2.57
926 953 1.401761 ACAAAGCAGGCATGTGTCAA 58.598 45.000 0.00 0.00 0.00 3.18
927 954 2.153645 CTACAAAGCAGGCATGTGTCA 58.846 47.619 0.00 0.00 0.00 3.58
928 955 2.907910 CTACAAAGCAGGCATGTGTC 57.092 50.000 0.00 0.00 0.00 3.67
941 968 1.234821 CCCGCTGTTTGAGCTACAAA 58.765 50.000 7.09 7.09 46.64 2.83
942 969 1.234615 GCCCGCTGTTTGAGCTACAA 61.235 55.000 0.00 0.00 46.64 2.41
943 970 1.671054 GCCCGCTGTTTGAGCTACA 60.671 57.895 0.00 0.00 46.64 2.74
944 971 2.740714 CGCCCGCTGTTTGAGCTAC 61.741 63.158 0.00 0.00 46.64 3.58
945 972 2.434185 CGCCCGCTGTTTGAGCTA 60.434 61.111 0.00 0.00 46.64 3.32
948 975 3.423154 GTCCGCCCGCTGTTTGAG 61.423 66.667 0.00 0.00 0.00 3.02
951 978 3.860930 AATGGTCCGCCCGCTGTTT 62.861 57.895 0.00 0.00 35.15 2.83
952 979 3.860930 AAATGGTCCGCCCGCTGTT 62.861 57.895 0.00 0.00 35.15 3.16
953 980 4.344865 AAATGGTCCGCCCGCTGT 62.345 61.111 0.00 0.00 35.15 4.40
954 981 3.814268 CAAATGGTCCGCCCGCTG 61.814 66.667 0.00 0.00 35.15 5.18
965 992 0.893270 TCAAGGCACGACCCAAATGG 60.893 55.000 0.00 0.00 40.58 3.16
966 993 0.240945 GTCAAGGCACGACCCAAATG 59.759 55.000 0.00 0.00 40.58 2.32
967 994 1.234615 CGTCAAGGCACGACCCAAAT 61.235 55.000 0.00 0.00 42.69 2.32
968 995 1.890041 CGTCAAGGCACGACCCAAA 60.890 57.895 0.00 0.00 42.69 3.28
969 996 2.280524 CGTCAAGGCACGACCCAA 60.281 61.111 0.00 0.00 42.69 4.12
970 997 3.220999 CTCGTCAAGGCACGACCCA 62.221 63.158 0.00 0.00 43.79 4.51
971 998 2.432628 CTCGTCAAGGCACGACCC 60.433 66.667 0.00 0.00 43.79 4.46
972 999 2.432628 CCTCGTCAAGGCACGACC 60.433 66.667 0.00 0.00 43.79 4.79
980 1007 0.946221 GTGTGAGCCACCTCGTCAAG 60.946 60.000 3.33 0.00 41.13 3.02
981 1008 1.069090 GTGTGAGCCACCTCGTCAA 59.931 57.895 3.33 0.00 41.13 3.18
982 1009 2.734591 GTGTGAGCCACCTCGTCA 59.265 61.111 3.33 0.00 41.13 4.35
1098 1125 1.087501 GGGAGAAGGCACACGAATTC 58.912 55.000 0.00 0.00 0.00 2.17
1139 1166 1.521681 GGAGAGGCCCAATTCGTCG 60.522 63.158 0.00 0.00 0.00 5.12
1147 1174 1.002274 GAGAAGGAGGAGAGGCCCA 59.998 63.158 0.00 0.00 37.37 5.36
1155 1182 1.001760 CGGAAGGGGAGAAGGAGGA 59.998 63.158 0.00 0.00 0.00 3.71
1156 1183 3.635510 CGGAAGGGGAGAAGGAGG 58.364 66.667 0.00 0.00 0.00 4.30
1294 1321 1.227823 CGCAGAGGAACACACCCAA 60.228 57.895 0.00 0.00 0.00 4.12
1336 1363 0.456142 GAGCGCGATTTTCCCCAAAC 60.456 55.000 12.10 0.00 0.00 2.93
1368 1395 2.046314 CGGCCAAATCGGACCACT 60.046 61.111 2.24 0.00 41.57 4.00
1506 1534 2.288642 ATCCGGCACCCAATCAGCAT 62.289 55.000 0.00 0.00 0.00 3.79
1510 1538 2.051518 GCAATCCGGCACCCAATCA 61.052 57.895 0.00 0.00 0.00 2.57
1538 1566 4.382754 CACAAAAATTCCGTCTTTAGCAGC 59.617 41.667 0.00 0.00 0.00 5.25
1554 1582 3.305398 ACGTGGCAAAAGTCACAAAAA 57.695 38.095 0.98 0.00 33.83 1.94
1579 1863 1.614996 CACTAATGTGCCCACAACCA 58.385 50.000 5.08 0.00 45.41 3.67
1650 1934 9.773328 AAATCGTTGATCAACATACATAACAAG 57.227 29.630 32.06 15.04 41.20 3.16
1652 1936 8.940952 TGAAATCGTTGATCAACATACATAACA 58.059 29.630 32.06 19.32 41.20 2.41
1672 1956 6.346040 GCACAAGCATAAACACAGTTGAAATC 60.346 38.462 0.00 0.00 41.58 2.17
1778 2062 0.951040 GAACCTCAGACGTGCTTGGG 60.951 60.000 0.00 0.00 0.00 4.12
1809 2093 0.674581 CCGGCTCTGCTTGTTGATCA 60.675 55.000 0.00 0.00 0.00 2.92
1870 2154 1.541233 GGCAGCAGGTATATGAACGCT 60.541 52.381 0.00 0.00 0.00 5.07
1938 2222 2.597510 GCCCCCTTTCTTGCACGT 60.598 61.111 0.00 0.00 0.00 4.49
2063 2347 2.811431 CCTTTATTGCCGACACACTGAA 59.189 45.455 0.00 0.00 0.00 3.02
2068 2352 3.215151 TCAAACCTTTATTGCCGACACA 58.785 40.909 0.00 0.00 0.00 3.72
2112 2396 1.845809 CTTCAGCGCCGACAAGCTTT 61.846 55.000 2.29 0.00 42.52 3.51
2141 2425 1.416401 TCTCCGGGATTGGTGCTATTC 59.584 52.381 0.00 0.00 0.00 1.75
2187 2471 1.349234 GCAAAATGGCGGTTCATGAC 58.651 50.000 0.00 0.00 0.00 3.06
2206 2491 9.778993 AAATCAATTGAAAACTATGTCAGATCG 57.221 29.630 13.09 0.00 0.00 3.69
2251 2536 2.068519 GCAAGGCTAAAACCATTGCAC 58.931 47.619 5.98 0.00 40.52 4.57
2263 2548 3.386078 CCTAGAGAACATGAGCAAGGCTA 59.614 47.826 0.00 0.00 39.88 3.93
2264 2549 2.170187 CCTAGAGAACATGAGCAAGGCT 59.830 50.000 0.00 0.00 43.88 4.58
2270 2555 5.016051 TGAACATCCTAGAGAACATGAGC 57.984 43.478 0.00 0.00 0.00 4.26
2422 2707 4.759693 ACTGCGACACTTATTTTGGATTGA 59.240 37.500 0.00 0.00 0.00 2.57
2425 2710 5.705609 AAACTGCGACACTTATTTTGGAT 57.294 34.783 0.00 0.00 0.00 3.41
2455 2740 2.287393 ACGCAGTTTTCAACAAACCC 57.713 45.000 0.00 0.00 37.78 4.11
2474 2759 5.911178 ACTCCCTTGGATCCATAATAAGTGA 59.089 40.000 17.06 5.33 0.00 3.41
2491 2776 3.344515 GGACAAAGCGAAATACTCCCTT 58.655 45.455 0.00 0.00 0.00 3.95
2492 2777 2.355818 GGGACAAAGCGAAATACTCCCT 60.356 50.000 0.00 0.00 34.15 4.20
2580 2865 5.827797 GCAATGTCTACCCCTAAATTGATGA 59.172 40.000 0.00 0.00 0.00 2.92
2589 2874 3.301794 TCGTAGCAATGTCTACCCCTA 57.698 47.619 8.49 0.00 36.46 3.53
2663 2948 7.876582 CCTAGGCCATATTAACTAACTGGTAAC 59.123 40.741 5.01 0.00 29.59 2.50
2688 3059 7.307219 GCCATGTGAAACTATATTCGAACTACC 60.307 40.741 0.00 0.00 38.04 3.18
2692 3063 5.277828 GGGCCATGTGAAACTATATTCGAAC 60.278 44.000 4.39 0.00 38.04 3.95
2715 3086 1.459592 CTGCAGTTCGTTTACTTCCGG 59.540 52.381 5.25 0.00 0.00 5.14
2788 3160 0.822164 AAGGCAATGGATTGAGCTGC 59.178 50.000 3.47 0.00 40.14 5.25
2794 3166 2.070783 GTGCAACAAGGCAATGGATTG 58.929 47.619 0.00 0.00 46.93 2.67
2863 3235 7.201767 GGCAACTCTGACAAATAAGATATTGCT 60.202 37.037 15.55 0.00 40.64 3.91
2882 3254 0.038159 AGTAGCACGACTGGCAACTC 60.038 55.000 0.00 0.00 37.61 3.01
2959 3331 8.970020 AGTAGCATGTTTTTCCATGATAATTCA 58.030 29.630 5.39 0.00 43.15 2.57
3005 3377 3.221771 GGGCCATGTGCAACTATATTCA 58.778 45.455 4.39 0.00 43.89 2.57
3072 3444 4.711846 TGTAGCCTGTCATTACACAGAGAT 59.288 41.667 2.08 0.00 45.92 2.75
3100 3472 1.103398 GTGCAACAAGGCAGTGGACT 61.103 55.000 0.00 0.00 45.96 3.85
3178 3551 3.181510 ACAACTCTGACAAAGCGACAAAC 60.182 43.478 0.00 0.00 0.00 2.93
3193 3566 4.122776 CAAGTAGCACAACTGACAACTCT 58.877 43.478 0.00 0.00 0.00 3.24
3206 3579 2.649331 TACGAGCTTCCAAGTAGCAC 57.351 50.000 0.00 0.00 41.11 4.40
3223 3596 5.590259 ACCTGCAGAAATGACATGGTATTAC 59.410 40.000 17.39 0.00 0.00 1.89
3347 3720 2.821366 GCATCAGGACCAGTGCGG 60.821 66.667 0.00 0.00 42.50 5.69
3498 3873 0.552848 CTTGCCACTCATATGGGGGT 59.447 55.000 7.68 0.00 40.43 4.95
3608 3983 6.509677 CGTTGAGAGTCCTTGTTACAGAAAAC 60.510 42.308 0.00 0.00 0.00 2.43
3769 4144 4.263506 GGGACCAAGGATATCCATTACCTG 60.264 50.000 23.81 9.99 38.89 4.00
3827 4202 2.264455 AGGAACAAGAGGATGCTCACT 58.736 47.619 17.24 0.00 0.00 3.41
4205 4580 7.013559 CCCTGAGTTATGTCATGAAATATTGCA 59.986 37.037 6.42 0.00 0.00 4.08
4553 4960 4.686972 GCCAAGGCAATCTTCCTTTTATC 58.313 43.478 6.14 0.00 41.73 1.75
4661 5068 4.705110 TCTCCCTGTGATGTCAAGAAAA 57.295 40.909 0.00 0.00 0.00 2.29
4718 5125 3.447586 GCATAGCATATCCGGAGAGGTAA 59.552 47.826 12.88 1.07 41.99 2.85
4860 5267 3.675348 TCAATTCTGATGGGCCTTGAT 57.325 42.857 4.53 0.00 0.00 2.57
4925 5332 4.192317 CAAGTATTTTCGGAAGGAGGGAG 58.808 47.826 0.00 0.00 0.00 4.30
4926 5333 3.585732 ACAAGTATTTTCGGAAGGAGGGA 59.414 43.478 0.00 0.00 0.00 4.20
4927 5334 3.939592 GACAAGTATTTTCGGAAGGAGGG 59.060 47.826 0.00 0.00 0.00 4.30
4928 5335 4.575885 TGACAAGTATTTTCGGAAGGAGG 58.424 43.478 0.00 0.00 0.00 4.30
4929 5336 5.874810 TGATGACAAGTATTTTCGGAAGGAG 59.125 40.000 0.00 0.00 0.00 3.69
4930 5337 5.800296 TGATGACAAGTATTTTCGGAAGGA 58.200 37.500 0.00 0.00 0.00 3.36
4931 5338 6.494893 TTGATGACAAGTATTTTCGGAAGG 57.505 37.500 0.00 0.00 0.00 3.46
4932 5339 8.853345 CATTTTGATGACAAGTATTTTCGGAAG 58.147 33.333 0.00 0.00 37.32 3.46
4933 5340 7.812191 CCATTTTGATGACAAGTATTTTCGGAA 59.188 33.333 0.00 0.00 37.32 4.30
4934 5341 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
4935 5342 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
4936 5343 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
4943 5350 8.096414 CCCTTTTTATCCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
4944 5351 7.550196 CCCCTTTTTATCCATTTTGATGACAAG 59.450 37.037 0.00 0.00 37.32 3.16
4945 5352 7.017056 ACCCCTTTTTATCCATTTTGATGACAA 59.983 33.333 0.00 0.00 0.00 3.18
4946 5353 6.500049 ACCCCTTTTTATCCATTTTGATGACA 59.500 34.615 0.00 0.00 0.00 3.58
4947 5354 6.818142 CACCCCTTTTTATCCATTTTGATGAC 59.182 38.462 0.00 0.00 0.00 3.06
4948 5355 6.500049 ACACCCCTTTTTATCCATTTTGATGA 59.500 34.615 0.00 0.00 0.00 2.92
4949 5356 6.710278 ACACCCCTTTTTATCCATTTTGATG 58.290 36.000 0.00 0.00 0.00 3.07
4950 5357 6.950860 ACACCCCTTTTTATCCATTTTGAT 57.049 33.333 0.00 0.00 0.00 2.57
4951 5358 7.898636 AGATACACCCCTTTTTATCCATTTTGA 59.101 33.333 0.00 0.00 0.00 2.69
4952 5359 8.078060 AGATACACCCCTTTTTATCCATTTTG 57.922 34.615 0.00 0.00 0.00 2.44
4953 5360 9.421399 CTAGATACACCCCTTTTTATCCATTTT 57.579 33.333 0.00 0.00 0.00 1.82
4954 5361 8.787818 TCTAGATACACCCCTTTTTATCCATTT 58.212 33.333 0.00 0.00 0.00 2.32
4955 5362 8.344939 TCTAGATACACCCCTTTTTATCCATT 57.655 34.615 0.00 0.00 0.00 3.16
4956 5363 7.947782 TCTAGATACACCCCTTTTTATCCAT 57.052 36.000 0.00 0.00 0.00 3.41
4957 5364 7.404980 AGTTCTAGATACACCCCTTTTTATCCA 59.595 37.037 0.00 0.00 0.00 3.41
4958 5365 7.803131 AGTTCTAGATACACCCCTTTTTATCC 58.197 38.462 0.00 0.00 0.00 2.59
4966 5373 9.503369 ACTTATTTTAGTTCTAGATACACCCCT 57.497 33.333 0.00 0.00 0.00 4.79
4967 5374 9.761504 GACTTATTTTAGTTCTAGATACACCCC 57.238 37.037 0.00 0.00 0.00 4.95
5003 5410 9.918630 ACTTGTCATCAAAATGGATAAAAGAAG 57.081 29.630 0.00 0.00 33.42 2.85
5010 5417 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
5011 5418 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
5012 5419 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
5013 5420 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
5014 5421 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
5015 5422 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
5016 5423 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
5017 5424 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
5018 5425 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
5019 5426 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
5020 5427 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
5021 5428 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
5022 5429 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
5023 5430 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
5024 5431 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
5025 5432 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
5026 5433 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
5027 5434 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
5028 5435 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
5029 5436 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
5030 5437 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
5031 5438 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
5032 5439 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
5033 5440 0.754217 CAATACTCCCTCCGTCCGGA 60.754 60.000 0.00 0.00 42.90 5.14
5034 5441 1.740285 CAATACTCCCTCCGTCCGG 59.260 63.158 0.00 0.00 0.00 5.14
5035 5442 1.041447 ACCAATACTCCCTCCGTCCG 61.041 60.000 0.00 0.00 0.00 4.79
5036 5443 1.201424 AACCAATACTCCCTCCGTCC 58.799 55.000 0.00 0.00 0.00 4.79
5037 5444 2.223994 GCTAACCAATACTCCCTCCGTC 60.224 54.545 0.00 0.00 0.00 4.79
5038 5445 1.761198 GCTAACCAATACTCCCTCCGT 59.239 52.381 0.00 0.00 0.00 4.69
5039 5446 2.040178 AGCTAACCAATACTCCCTCCG 58.960 52.381 0.00 0.00 0.00 4.63
5040 5447 3.809905 CAAGCTAACCAATACTCCCTCC 58.190 50.000 0.00 0.00 0.00 4.30
5041 5448 3.118223 AGCAAGCTAACCAATACTCCCTC 60.118 47.826 0.00 0.00 0.00 4.30
5042 5449 2.846827 AGCAAGCTAACCAATACTCCCT 59.153 45.455 0.00 0.00 0.00 4.20
5043 5450 3.283259 AGCAAGCTAACCAATACTCCC 57.717 47.619 0.00 0.00 0.00 4.30
5044 5451 4.518249 AGAAGCAAGCTAACCAATACTCC 58.482 43.478 0.00 0.00 0.00 3.85
5045 5452 5.877564 AGAAGAAGCAAGCTAACCAATACTC 59.122 40.000 0.00 0.00 0.00 2.59
5046 5453 5.645497 CAGAAGAAGCAAGCTAACCAATACT 59.355 40.000 0.00 0.00 0.00 2.12
5047 5454 5.412904 ACAGAAGAAGCAAGCTAACCAATAC 59.587 40.000 0.00 0.00 0.00 1.89
5048 5455 5.412594 CACAGAAGAAGCAAGCTAACCAATA 59.587 40.000 0.00 0.00 0.00 1.90
5049 5456 4.217118 CACAGAAGAAGCAAGCTAACCAAT 59.783 41.667 0.00 0.00 0.00 3.16
5100 5507 1.253100 CACGTTTTTGCCCCACCTAT 58.747 50.000 0.00 0.00 0.00 2.57
5346 5753 5.393896 GCTAGACTGTATTAACTCCACGGTT 60.394 44.000 0.00 0.00 32.01 4.44
5347 5754 4.097589 GCTAGACTGTATTAACTCCACGGT 59.902 45.833 0.00 0.00 34.52 4.83
5348 5755 4.097437 TGCTAGACTGTATTAACTCCACGG 59.903 45.833 0.00 0.00 0.00 4.94
5349 5756 5.035443 GTGCTAGACTGTATTAACTCCACG 58.965 45.833 0.00 0.00 0.00 4.94
5350 5757 5.035443 CGTGCTAGACTGTATTAACTCCAC 58.965 45.833 0.00 0.00 0.00 4.02
5389 5798 0.905357 AGACTGCTTAGCCGTTGGAT 59.095 50.000 2.32 0.00 0.00 3.41
5619 6028 5.437289 TCAGGAATTGTGCAAACTAGTTG 57.563 39.130 9.34 4.88 40.50 3.16
5710 6119 7.057149 ACTACGCAAAGAAATATGTGTACAC 57.943 36.000 19.36 19.36 40.48 2.90
5761 6170 2.610438 ACAAAGGGCCTGACAATGAT 57.390 45.000 6.92 0.00 0.00 2.45
5772 6181 2.159212 ACCAACGTGTTAAACAAAGGGC 60.159 45.455 0.00 0.00 0.00 5.19
5973 6382 0.179045 GAGAAGCACCATACGGCCAT 60.179 55.000 2.24 0.00 34.57 4.40
5975 6384 0.530870 GAGAGAAGCACCATACGGCC 60.531 60.000 0.00 0.00 34.57 6.13
5977 6386 0.249073 CGGAGAGAAGCACCATACGG 60.249 60.000 0.00 0.00 38.77 4.02
5978 6387 0.249073 CCGGAGAGAAGCACCATACG 60.249 60.000 0.00 0.00 0.00 3.06
5979 6388 0.105039 CCCGGAGAGAAGCACCATAC 59.895 60.000 0.73 0.00 0.00 2.39
5981 6390 0.692419 ATCCCGGAGAGAAGCACCAT 60.692 55.000 0.73 0.00 0.00 3.55
5983 6392 1.144936 CATCCCGGAGAGAAGCACC 59.855 63.158 0.73 0.00 0.00 5.01
5984 6393 1.144936 CCATCCCGGAGAGAAGCAC 59.855 63.158 0.73 0.00 36.56 4.40
5986 6395 3.956377 TCCATCCCGGAGAGAAGC 58.044 61.111 0.73 0.00 39.64 3.86
5993 6402 3.897657 AATCTACTACTCCATCCCGGA 57.102 47.619 0.73 0.00 43.61 5.14
5995 6404 5.105716 CCATGTAATCTACTACTCCATCCCG 60.106 48.000 0.00 0.00 0.00 5.14
6000 7466 3.572682 CGGCCATGTAATCTACTACTCCA 59.427 47.826 2.24 0.00 0.00 3.86
6005 7471 5.047590 CACCATACGGCCATGTAATCTACTA 60.048 44.000 2.24 0.00 34.57 1.82
6021 7487 0.249073 CCGGAGAGAAGCACCATACG 60.249 60.000 0.00 0.00 0.00 3.06
6033 7499 4.559704 GCTATGGTACTGAATTCCGGAGAG 60.560 50.000 3.34 2.17 0.00 3.20
6052 7518 2.746362 GCACAGCAACAGAAGAAGCTAT 59.254 45.455 0.00 0.00 35.19 2.97
6142 7608 1.416401 GGTCAACTGACAGTTCTCCCA 59.584 52.381 18.02 0.00 46.47 4.37
6173 7639 2.356667 GTCCCTCCCTTGGGCTTG 59.643 66.667 0.00 0.00 46.67 4.01
6284 7750 6.475207 CATTCGGTTTTACAATTAGGTCGAG 58.525 40.000 0.00 0.00 0.00 4.04
6373 7839 5.010012 CCAACAGCTCAAAGGTGAAACTAAT 59.990 40.000 12.67 0.00 45.98 1.73
6413 7879 9.943163 GAAGATGAGATTACTTTGCCTATTTTC 57.057 33.333 0.00 0.00 0.00 2.29
6521 7987 3.979501 AGGAAAATCCCTATGCATGGT 57.020 42.857 10.16 0.00 37.19 3.55
6556 8022 1.380515 TCCGAGCTTCCTGAGGAGG 60.381 63.158 6.20 6.20 41.39 4.30
6557 8023 1.671901 GGTCCGAGCTTCCTGAGGAG 61.672 65.000 0.00 0.00 31.21 3.69
6558 8024 1.682684 GGTCCGAGCTTCCTGAGGA 60.683 63.158 0.00 0.00 0.00 3.71
6559 8025 1.333636 ATGGTCCGAGCTTCCTGAGG 61.334 60.000 0.00 0.00 0.00 3.86
6560 8026 0.539051 AATGGTCCGAGCTTCCTGAG 59.461 55.000 0.00 0.00 0.00 3.35
6561 8027 0.250234 CAATGGTCCGAGCTTCCTGA 59.750 55.000 0.00 0.00 0.00 3.86
6562 8028 0.036010 ACAATGGTCCGAGCTTCCTG 60.036 55.000 0.00 0.00 0.00 3.86
6563 8029 0.036010 CACAATGGTCCGAGCTTCCT 60.036 55.000 0.00 0.00 0.00 3.36
6564 8030 0.036388 TCACAATGGTCCGAGCTTCC 60.036 55.000 0.00 0.00 0.00 3.46
6565 8031 1.667724 CATCACAATGGTCCGAGCTTC 59.332 52.381 0.00 0.00 0.00 3.86
6566 8032 1.003580 ACATCACAATGGTCCGAGCTT 59.996 47.619 0.00 0.00 37.19 3.74
6567 8033 0.615331 ACATCACAATGGTCCGAGCT 59.385 50.000 0.00 0.00 37.19 4.09
6568 8034 0.729116 CACATCACAATGGTCCGAGC 59.271 55.000 0.00 0.00 37.19 5.03
6569 8035 1.372582 CCACATCACAATGGTCCGAG 58.627 55.000 0.00 0.00 37.19 4.63
6570 8036 0.035534 CCCACATCACAATGGTCCGA 60.036 55.000 0.00 0.00 37.19 4.55
6571 8037 1.031571 CCCCACATCACAATGGTCCG 61.032 60.000 0.00 0.00 37.19 4.79
6572 8038 0.039618 ACCCCACATCACAATGGTCC 59.960 55.000 0.00 0.00 37.19 4.46
6573 8039 2.799126 TACCCCACATCACAATGGTC 57.201 50.000 0.00 0.00 37.19 4.02
6574 8040 3.245586 ACAATACCCCACATCACAATGGT 60.246 43.478 0.00 0.00 37.19 3.55
6575 8041 3.130869 CACAATACCCCACATCACAATGG 59.869 47.826 0.00 0.00 37.19 3.16
6576 8042 3.763360 ACACAATACCCCACATCACAATG 59.237 43.478 0.00 0.00 38.93 2.82
6577 8043 4.016444 GACACAATACCCCACATCACAAT 58.984 43.478 0.00 0.00 0.00 2.71
6578 8044 3.073798 AGACACAATACCCCACATCACAA 59.926 43.478 0.00 0.00 0.00 3.33
6579 8045 2.642311 AGACACAATACCCCACATCACA 59.358 45.455 0.00 0.00 0.00 3.58
6580 8046 3.350219 AGACACAATACCCCACATCAC 57.650 47.619 0.00 0.00 0.00 3.06
6581 8047 4.101114 ACTAGACACAATACCCCACATCA 58.899 43.478 0.00 0.00 0.00 3.07
6582 8048 4.755266 ACTAGACACAATACCCCACATC 57.245 45.455 0.00 0.00 0.00 3.06
6583 8049 4.843728 CAACTAGACACAATACCCCACAT 58.156 43.478 0.00 0.00 0.00 3.21
6584 8050 3.558321 GCAACTAGACACAATACCCCACA 60.558 47.826 0.00 0.00 0.00 4.17
6585 8051 3.007635 GCAACTAGACACAATACCCCAC 58.992 50.000 0.00 0.00 0.00 4.61
6586 8052 2.910319 AGCAACTAGACACAATACCCCA 59.090 45.455 0.00 0.00 0.00 4.96
6587 8053 3.629142 AGCAACTAGACACAATACCCC 57.371 47.619 0.00 0.00 0.00 4.95
6588 8054 4.575885 TCAAGCAACTAGACACAATACCC 58.424 43.478 0.00 0.00 0.00 3.69
6589 8055 6.109359 AGATCAAGCAACTAGACACAATACC 58.891 40.000 0.00 0.00 0.00 2.73
6590 8056 7.547370 AGAAGATCAAGCAACTAGACACAATAC 59.453 37.037 0.00 0.00 0.00 1.89
6591 8057 7.547019 CAGAAGATCAAGCAACTAGACACAATA 59.453 37.037 0.00 0.00 0.00 1.90
6592 8058 6.370994 CAGAAGATCAAGCAACTAGACACAAT 59.629 38.462 0.00 0.00 0.00 2.71
6593 8059 5.698089 CAGAAGATCAAGCAACTAGACACAA 59.302 40.000 0.00 0.00 0.00 3.33
6594 8060 5.233225 CAGAAGATCAAGCAACTAGACACA 58.767 41.667 0.00 0.00 0.00 3.72
6606 8072 6.279882 GGTTCTACTCATCCAGAAGATCAAG 58.720 44.000 0.00 0.00 31.62 3.02
6615 8081 5.541868 ACATCATAGGGTTCTACTCATCCAG 59.458 44.000 0.00 0.00 0.00 3.86
6676 8142 2.833943 CCCTTTCCCCCTTCAAATTCTG 59.166 50.000 0.00 0.00 0.00 3.02
6679 8145 1.798941 TCCCCTTTCCCCCTTCAAATT 59.201 47.619 0.00 0.00 0.00 1.82
6680 8146 1.478043 TCCCCTTTCCCCCTTCAAAT 58.522 50.000 0.00 0.00 0.00 2.32
6681 8147 1.149077 CTTCCCCTTTCCCCCTTCAAA 59.851 52.381 0.00 0.00 0.00 2.69
6682 8148 0.783850 CTTCCCCTTTCCCCCTTCAA 59.216 55.000 0.00 0.00 0.00 2.69
6683 8149 0.103608 TCTTCCCCTTTCCCCCTTCA 60.104 55.000 0.00 0.00 0.00 3.02
6684 8150 0.626382 CTCTTCCCCTTTCCCCCTTC 59.374 60.000 0.00 0.00 0.00 3.46
6685 8151 1.510431 GCTCTTCCCCTTTCCCCCTT 61.510 60.000 0.00 0.00 0.00 3.95
6686 8152 1.931180 GCTCTTCCCCTTTCCCCCT 60.931 63.158 0.00 0.00 0.00 4.79
6691 8157 5.010282 TGTTCTTATTGCTCTTCCCCTTTC 58.990 41.667 0.00 0.00 0.00 2.62
6897 8365 4.784015 AGAAGGATCCCCATCATAGGATT 58.216 43.478 8.55 0.00 43.08 3.01
6942 8410 1.063114 GCTCCTTGTACCTCCTCCCTA 60.063 57.143 0.00 0.00 0.00 3.53
6944 8413 0.617820 TGCTCCTTGTACCTCCTCCC 60.618 60.000 0.00 0.00 0.00 4.30
7045 8520 4.452733 GCCCCTCCACTTCGTCCG 62.453 72.222 0.00 0.00 0.00 4.79
7063 8538 5.237048 AGCTGACTGAGATTTGTCTCTTTC 58.763 41.667 6.95 4.19 37.62 2.62
7232 8743 1.282248 CCATGCGTACGGCCTATTCG 61.282 60.000 18.39 0.00 42.61 3.34
7234 8745 1.070786 CCCATGCGTACGGCCTATT 59.929 57.895 18.39 0.00 42.61 1.73
7244 8755 0.609131 CTCTTTTGGACCCCATGCGT 60.609 55.000 0.00 0.00 31.53 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.