Multiple sequence alignment - TraesCS2B01G258500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G258500 chr2B 100.000 5456 0 0 1 5456 316053119 316047664 0.000000e+00 10076
1 TraesCS2B01G258500 chr2B 83.028 218 31 5 5186 5399 794888588 794888803 5.580000e-45 193
2 TraesCS2B01G258500 chr2D 95.659 3755 115 12 1602 5344 288615291 288611573 0.000000e+00 5987
3 TraesCS2B01G258500 chr2D 96.372 882 23 5 625 1499 288616218 288615339 0.000000e+00 1443
4 TraesCS2B01G258500 chr2D 89.442 502 50 3 1 500 288617011 288616511 9.970000e-177 630
5 TraesCS2B01G258500 chr2D 90.604 149 12 2 99 246 288616764 288616617 4.310000e-46 196
6 TraesCS2B01G258500 chr2D 98.901 91 0 1 1514 1603 341697043 341696953 1.570000e-35 161
7 TraesCS2B01G258500 chr2A 96.898 3191 76 8 1605 4786 348092900 348089724 0.000000e+00 5323
8 TraesCS2B01G258500 chr2A 94.241 903 30 7 625 1510 348093837 348092940 0.000000e+00 1360
9 TraesCS2B01G258500 chr2A 88.323 471 41 10 4772 5232 348089221 348088755 2.220000e-153 553
10 TraesCS2B01G258500 chr2A 87.582 459 55 2 1 457 348119228 348118770 1.040000e-146 531
11 TraesCS2B01G258500 chr2A 92.254 142 10 1 250 390 348119127 348118986 3.330000e-47 200
12 TraesCS2B01G258500 chr2A 90.551 127 9 3 493 617 9334090 9333965 1.220000e-36 165
13 TraesCS2B01G258500 chr2A 89.147 129 13 1 501 629 41477468 41477595 5.660000e-35 159
14 TraesCS2B01G258500 chr7D 82.574 373 46 16 5037 5400 205499359 205499721 1.480000e-80 311
15 TraesCS2B01G258500 chr7D 90.323 124 12 0 495 618 572041379 572041256 4.370000e-36 163
16 TraesCS2B01G258500 chr7D 98.901 91 0 1 1515 1604 511569000 511568910 1.570000e-35 161
17 TraesCS2B01G258500 chr7D 75.595 336 63 15 5075 5400 55010566 55010240 1.220000e-31 148
18 TraesCS2B01G258500 chr7D 82.576 132 17 5 5270 5400 55005542 55005416 1.610000e-20 111
19 TraesCS2B01G258500 chr5A 85.629 167 24 0 1023 1189 555568264 555568098 5.620000e-40 176
20 TraesCS2B01G258500 chr3B 90.076 131 13 0 494 624 663084378 663084248 2.610000e-38 171
21 TraesCS2B01G258500 chr3B 98.901 91 0 1 1515 1604 398842458 398842368 1.570000e-35 161
22 TraesCS2B01G258500 chr6B 90.551 127 12 0 494 620 148067911 148068037 9.400000e-38 169
23 TraesCS2B01G258500 chr4B 81.019 216 37 3 5186 5400 376428793 376429005 9.400000e-38 169
24 TraesCS2B01G258500 chr1D 93.043 115 8 0 497 611 391296383 391296497 9.400000e-38 169
25 TraesCS2B01G258500 chr6A 91.057 123 11 0 495 617 404354821 404354699 3.380000e-37 167
26 TraesCS2B01G258500 chr6A 97.895 95 1 1 1511 1604 595187362 595187268 4.370000e-36 163
27 TraesCS2B01G258500 chr5B 85.030 167 22 2 1023 1189 534365519 534365356 3.380000e-37 167
28 TraesCS2B01G258500 chr5B 98.913 92 0 1 1515 1605 136051657 136051566 4.370000e-36 163
29 TraesCS2B01G258500 chr5B 97.872 94 1 1 1511 1603 112575431 112575338 1.570000e-35 161
30 TraesCS2B01G258500 chr4A 89.313 131 14 0 495 625 546529386 546529516 1.220000e-36 165
31 TraesCS2B01G258500 chrUn 98.889 90 0 1 1515 1603 17582172 17582083 5.660000e-35 159
32 TraesCS2B01G258500 chrUn 98.889 90 0 1 1515 1603 86972358 86972269 5.660000e-35 159
33 TraesCS2B01G258500 chrUn 98.889 90 0 1 1515 1603 349855715 349855626 5.660000e-35 159
34 TraesCS2B01G258500 chr6D 87.770 139 13 4 492 630 38888730 38888596 5.660000e-35 159
35 TraesCS2B01G258500 chr5D 84.568 162 22 2 1028 1189 439678252 439678094 2.030000e-34 158
36 TraesCS2B01G258500 chr3D 75.610 287 42 22 5071 5343 131579578 131579306 3.450000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G258500 chr2B 316047664 316053119 5455 True 10076 10076 100.00000 1 5456 1 chr2B.!!$R1 5455
1 TraesCS2B01G258500 chr2D 288611573 288617011 5438 True 2064 5987 93.01925 1 5344 4 chr2D.!!$R2 5343
2 TraesCS2B01G258500 chr2A 348088755 348093837 5082 True 2412 5323 93.15400 625 5232 3 chr2A.!!$R2 4607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 203 0.109342 CAGGTCCTTCAAGTGCACCT 59.891 55.0 14.63 0.0 38.02 4.00 F
1482 1664 0.107361 GGAAACGGACCTATGGTGGG 60.107 60.0 0.00 0.0 35.25 4.61 F
2677 2864 0.236187 GGTCGTTTGCGTGTATTGCA 59.764 50.0 0.00 0.0 41.38 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1592 1779 0.183014 TCCCCCGCTAACAACAACAA 59.817 50.0 0.00 0.0 0.00 2.83 R
2813 3000 1.175347 TACCTTGCAAATGCGCCACA 61.175 50.0 4.18 0.0 45.83 4.17 R
4581 4775 0.770499 TGATCAAGGTTGGCTCCACA 59.230 50.0 0.00 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.353889 CCGAAATGATCTCCTTGCTGTG 59.646 50.000 0.00 0.00 0.00 3.66
26 27 3.181513 CGAAATGATCTCCTTGCTGTGTG 60.182 47.826 0.00 0.00 0.00 3.82
44 45 7.042051 TGCTGTGTGAGTTTACTTCAATCTTAC 60.042 37.037 0.00 0.00 0.00 2.34
51 52 9.871238 TGAGTTTACTTCAATCTTACTACATCC 57.129 33.333 0.00 0.00 0.00 3.51
56 57 6.344500 ACTTCAATCTTACTACATCCAGCAG 58.656 40.000 0.00 0.00 0.00 4.24
72 73 1.864862 CAGTGCAAGCGAGGTTCAG 59.135 57.895 0.00 0.00 0.00 3.02
80 81 0.603975 AGCGAGGTTCAGTCCAAAGC 60.604 55.000 0.00 0.00 0.00 3.51
84 85 2.674177 CGAGGTTCAGTCCAAAGCGTAT 60.674 50.000 0.00 0.00 0.00 3.06
122 123 2.949714 AAACGCATCGTAGCATATGC 57.050 45.000 20.36 20.36 44.02 3.14
130 132 4.618489 GCATCGTAGCATATGCCAATTTTC 59.382 41.667 23.96 5.75 42.13 2.29
137 139 4.225717 AGCATATGCCAATTTTCCCTTTGT 59.774 37.500 23.96 0.00 43.38 2.83
138 140 4.943093 GCATATGCCAATTTTCCCTTTGTT 59.057 37.500 17.26 0.00 34.31 2.83
157 159 3.181491 TGTTGCAGCAAGAAAGTTACCAC 60.181 43.478 8.49 0.00 0.00 4.16
158 160 1.953686 TGCAGCAAGAAAGTTACCACC 59.046 47.619 0.00 0.00 0.00 4.61
159 161 1.069227 GCAGCAAGAAAGTTACCACCG 60.069 52.381 0.00 0.00 0.00 4.94
180 182 3.637432 GTGATCTCTGATAACAGCTCCG 58.363 50.000 0.00 0.00 43.17 4.63
184 186 2.685388 TCTCTGATAACAGCTCCGACAG 59.315 50.000 0.00 0.00 43.17 3.51
195 197 0.969894 CTCCGACAGGTCCTTCAAGT 59.030 55.000 0.00 0.00 39.05 3.16
199 201 1.230324 GACAGGTCCTTCAAGTGCAC 58.770 55.000 9.40 9.40 0.00 4.57
201 203 0.109342 CAGGTCCTTCAAGTGCACCT 59.891 55.000 14.63 0.00 38.02 4.00
212 214 0.904649 AGTGCACCTGGATCGAATCA 59.095 50.000 14.63 0.00 0.00 2.57
245 247 8.315391 ACATTCAACTTGACATATCCATATCG 57.685 34.615 0.00 0.00 0.00 2.92
248 250 5.012046 TCAACTTGACATATCCATATCGGCT 59.988 40.000 0.00 0.00 33.14 5.52
270 273 5.276678 GCTGTAAACGCATCGTACATATGTT 60.277 40.000 14.77 0.00 39.99 2.71
273 276 8.182658 TGTAAACGCATCGTACATATGTTAAA 57.817 30.769 14.77 0.00 39.99 1.52
274 277 8.654215 TGTAAACGCATCGTACATATGTTAAAA 58.346 29.630 14.77 0.00 39.99 1.52
290 293 6.992063 TGTTAAAATTTTCCTTTGCTGCAA 57.008 29.167 11.69 11.69 0.00 4.08
314 317 5.069516 ACAAGAAAGTTGCCATTGTGATCTT 59.930 36.000 0.00 0.00 33.09 2.40
344 347 0.756294 TCCGACAAGTCCTTCAAGCA 59.244 50.000 0.00 0.00 0.00 3.91
350 353 2.158623 ACAAGTCCTTCAAGCACATCCA 60.159 45.455 0.00 0.00 0.00 3.41
352 355 1.980765 AGTCCTTCAAGCACATCCAGA 59.019 47.619 0.00 0.00 0.00 3.86
355 358 1.938577 CCTTCAAGCACATCCAGATCG 59.061 52.381 0.00 0.00 0.00 3.69
374 377 4.944619 TCGAATCCTGCATCTACATTCT 57.055 40.909 0.00 0.00 0.00 2.40
394 397 7.653713 ACATTCTACTTGACATATCCATTCGTC 59.346 37.037 0.00 0.00 0.00 4.20
398 401 1.410882 TGACATATCCATTCGTCGGCA 59.589 47.619 0.00 0.00 0.00 5.69
404 407 2.525248 CCATTCGTCGGCATGGTCG 61.525 63.158 13.48 0.00 36.01 4.79
421 424 3.194116 TGGTCGAACCACCTACTTGTATC 59.806 47.826 0.00 0.00 44.79 2.24
423 426 4.081807 GGTCGAACCACCTACTTGTATCTT 60.082 45.833 0.00 0.00 38.42 2.40
424 427 4.863131 GTCGAACCACCTACTTGTATCTTG 59.137 45.833 0.00 0.00 0.00 3.02
429 432 3.134804 CCACCTACTTGTATCTTGGGAGG 59.865 52.174 0.00 0.00 0.00 4.30
450 453 4.460382 AGGACATGCAGTAATGAAGTTTGG 59.540 41.667 0.00 0.00 0.00 3.28
458 461 7.109501 TGCAGTAATGAAGTTTGGAGCTAATA 58.890 34.615 0.00 0.00 0.00 0.98
459 462 7.065803 TGCAGTAATGAAGTTTGGAGCTAATAC 59.934 37.037 0.00 0.00 0.00 1.89
464 467 7.856145 ATGAAGTTTGGAGCTAATACTCTTG 57.144 36.000 0.00 0.00 36.87 3.02
496 499 8.143193 TCAAGAAAGACATGTGTTTTGCAATAT 58.857 29.630 20.63 0.00 0.00 1.28
497 500 8.430063 CAAGAAAGACATGTGTTTTGCAATATC 58.570 33.333 20.63 6.99 0.00 1.63
498 501 7.889469 AGAAAGACATGTGTTTTGCAATATCT 58.111 30.769 20.63 9.03 0.00 1.98
500 503 7.458409 AAGACATGTGTTTTGCAATATCTCT 57.542 32.000 1.15 0.00 0.00 3.10
501 504 8.565896 AAGACATGTGTTTTGCAATATCTCTA 57.434 30.769 1.15 0.00 0.00 2.43
503 506 7.826252 AGACATGTGTTTTGCAATATCTCTACT 59.174 33.333 1.15 0.00 0.00 2.57
504 507 9.098355 GACATGTGTTTTGCAATATCTCTACTA 57.902 33.333 1.15 0.00 0.00 1.82
505 508 8.883731 ACATGTGTTTTGCAATATCTCTACTAC 58.116 33.333 0.00 0.00 0.00 2.73
507 510 9.672673 ATGTGTTTTGCAATATCTCTACTACTT 57.327 29.630 0.00 0.00 0.00 2.24
514 517 9.865321 TTGCAATATCTCTACTACTTAAAACGT 57.135 29.630 0.00 0.00 0.00 3.99
535 538 9.673454 AAACGTACTTAAGATTTTCATTTCACC 57.327 29.630 10.09 0.00 0.00 4.02
536 539 8.617290 ACGTACTTAAGATTTTCATTTCACCT 57.383 30.769 10.09 0.00 0.00 4.00
537 540 9.063615 ACGTACTTAAGATTTTCATTTCACCTT 57.936 29.630 10.09 0.00 0.00 3.50
538 541 9.893305 CGTACTTAAGATTTTCATTTCACCTTT 57.107 29.630 10.09 0.00 0.00 3.11
543 546 9.981114 TTAAGATTTTCATTTCACCTTTCTTCC 57.019 29.630 0.00 0.00 0.00 3.46
544 547 6.997655 AGATTTTCATTTCACCTTTCTTCCC 58.002 36.000 0.00 0.00 0.00 3.97
545 548 6.554605 AGATTTTCATTTCACCTTTCTTCCCA 59.445 34.615 0.00 0.00 0.00 4.37
546 549 5.529581 TTTCATTTCACCTTTCTTCCCAC 57.470 39.130 0.00 0.00 0.00 4.61
547 550 3.496331 TCATTTCACCTTTCTTCCCACC 58.504 45.455 0.00 0.00 0.00 4.61
548 551 3.117322 TCATTTCACCTTTCTTCCCACCA 60.117 43.478 0.00 0.00 0.00 4.17
549 552 3.611025 TTTCACCTTTCTTCCCACCAT 57.389 42.857 0.00 0.00 0.00 3.55
551 554 1.354368 TCACCTTTCTTCCCACCATCC 59.646 52.381 0.00 0.00 0.00 3.51
552 555 0.328258 ACCTTTCTTCCCACCATCCG 59.672 55.000 0.00 0.00 0.00 4.18
553 556 0.328258 CCTTTCTTCCCACCATCCGT 59.672 55.000 0.00 0.00 0.00 4.69
555 558 0.326927 TTTCTTCCCACCATCCGTCC 59.673 55.000 0.00 0.00 0.00 4.79
556 559 1.895020 TTCTTCCCACCATCCGTCCG 61.895 60.000 0.00 0.00 0.00 4.79
558 561 2.573609 CTTCCCACCATCCGTCCGTC 62.574 65.000 0.00 0.00 0.00 4.79
559 562 4.157120 CCCACCATCCGTCCGTCC 62.157 72.222 0.00 0.00 0.00 4.79
560 563 3.387091 CCACCATCCGTCCGTCCA 61.387 66.667 0.00 0.00 0.00 4.02
561 564 2.660206 CACCATCCGTCCGTCCAA 59.340 61.111 0.00 0.00 0.00 3.53
562 565 1.740296 CACCATCCGTCCGTCCAAC 60.740 63.158 0.00 0.00 0.00 3.77
563 566 2.125269 CCATCCGTCCGTCCAACC 60.125 66.667 0.00 0.00 0.00 3.77
564 567 2.656069 CCATCCGTCCGTCCAACCT 61.656 63.158 0.00 0.00 0.00 3.50
567 570 1.896122 ATCCGTCCGTCCAACCTTCC 61.896 60.000 0.00 0.00 0.00 3.46
570 573 1.019278 CGTCCGTCCAACCTTCCATG 61.019 60.000 0.00 0.00 0.00 3.66
573 576 2.093128 GTCCGTCCAACCTTCCATGTAT 60.093 50.000 0.00 0.00 0.00 2.29
575 578 3.971305 TCCGTCCAACCTTCCATGTATAT 59.029 43.478 0.00 0.00 0.00 0.86
576 579 4.065088 CCGTCCAACCTTCCATGTATATG 58.935 47.826 0.00 0.00 0.00 1.78
577 580 4.202315 CCGTCCAACCTTCCATGTATATGA 60.202 45.833 0.25 0.00 36.36 2.15
580 583 7.158697 CGTCCAACCTTCCATGTATATGATAA 58.841 38.462 0.25 0.00 36.36 1.75
582 585 9.167311 GTCCAACCTTCCATGTATATGATAATC 57.833 37.037 0.25 0.00 36.36 1.75
584 587 9.519191 CCAACCTTCCATGTATATGATAATCAA 57.481 33.333 0.25 0.00 36.36 2.57
648 818 6.626302 TCATTTTTCGAAAACAGACAACCTT 58.374 32.000 22.41 0.00 0.00 3.50
800 974 4.855230 ACCCCACCACCACCACCT 62.855 66.667 0.00 0.00 0.00 4.00
864 1041 0.601057 GAAACCACCCCAACCAATCG 59.399 55.000 0.00 0.00 0.00 3.34
889 1069 0.695347 CTTGGAGCCTCCCTGTTCTT 59.305 55.000 8.62 0.00 35.03 2.52
1252 1434 1.320344 CCCTGTTCCGACCGAGATCA 61.320 60.000 0.00 0.00 0.00 2.92
1409 1591 2.996168 GATCATAAGGCGGCGGCTGT 62.996 60.000 36.80 26.00 38.81 4.40
1438 1620 2.032528 TCAGCTCCTTGTTGCGGG 59.967 61.111 0.00 0.00 0.00 6.13
1482 1664 0.107361 GGAAACGGACCTATGGTGGG 60.107 60.000 0.00 0.00 35.25 4.61
1531 1718 8.827832 ATTTTCATGAGATCTTATGGGTTTCA 57.172 30.769 23.14 4.32 0.00 2.69
1532 1719 7.630242 TTTCATGAGATCTTATGGGTTTCAC 57.370 36.000 23.14 0.00 0.00 3.18
1534 1721 5.429762 TCATGAGATCTTATGGGTTTCACCT 59.570 40.000 23.14 0.00 38.64 4.00
1535 1722 5.359194 TGAGATCTTATGGGTTTCACCTC 57.641 43.478 0.00 0.00 38.64 3.85
1537 1724 6.202331 TGAGATCTTATGGGTTTCACCTCTA 58.798 40.000 0.00 0.00 38.64 2.43
1538 1725 6.325028 TGAGATCTTATGGGTTTCACCTCTAG 59.675 42.308 0.00 0.00 38.64 2.43
1539 1726 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
1540 1727 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
1542 1729 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
1546 1733 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
1547 1734 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
1548 1735 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
1549 1736 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
1550 1737 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
1551 1738 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
1552 1739 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
1553 1740 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
1554 1741 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
1555 1742 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
1556 1743 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
1567 1754 4.918810 CAACTTGTTTGGGACTAAAGCT 57.081 40.909 0.00 0.00 0.00 3.74
1568 1755 5.262588 CAACTTGTTTGGGACTAAAGCTT 57.737 39.130 0.00 0.00 0.00 3.74
1569 1756 5.660460 CAACTTGTTTGGGACTAAAGCTTT 58.340 37.500 17.30 17.30 0.00 3.51
1570 1757 5.262588 ACTTGTTTGGGACTAAAGCTTTG 57.737 39.130 22.02 13.48 0.00 2.77
1571 1758 4.709886 ACTTGTTTGGGACTAAAGCTTTGT 59.290 37.500 22.02 16.45 0.00 2.83
1572 1759 5.186992 ACTTGTTTGGGACTAAAGCTTTGTT 59.813 36.000 22.02 8.01 0.00 2.83
1573 1760 5.004922 TGTTTGGGACTAAAGCTTTGTTG 57.995 39.130 22.02 13.37 0.00 3.33
1574 1761 4.464597 TGTTTGGGACTAAAGCTTTGTTGT 59.535 37.500 22.02 16.28 0.00 3.32
1575 1762 5.046950 TGTTTGGGACTAAAGCTTTGTTGTT 60.047 36.000 22.02 0.94 0.00 2.83
1576 1763 4.647424 TGGGACTAAAGCTTTGTTGTTG 57.353 40.909 22.02 7.16 0.00 3.33
1577 1764 4.020543 TGGGACTAAAGCTTTGTTGTTGT 58.979 39.130 22.02 10.03 0.00 3.32
1578 1765 4.464597 TGGGACTAAAGCTTTGTTGTTGTT 59.535 37.500 22.02 0.00 0.00 2.83
1579 1766 4.803613 GGGACTAAAGCTTTGTTGTTGTTG 59.196 41.667 22.02 0.00 0.00 3.33
1580 1767 5.407502 GGACTAAAGCTTTGTTGTTGTTGT 58.592 37.500 22.02 0.00 0.00 3.32
1581 1768 5.867174 GGACTAAAGCTTTGTTGTTGTTGTT 59.133 36.000 22.02 0.00 0.00 2.83
1582 1769 6.183360 GGACTAAAGCTTTGTTGTTGTTGTTG 60.183 38.462 22.02 0.00 0.00 3.33
1583 1770 6.220201 ACTAAAGCTTTGTTGTTGTTGTTGT 58.780 32.000 22.02 0.00 0.00 3.32
1584 1771 6.704050 ACTAAAGCTTTGTTGTTGTTGTTGTT 59.296 30.769 22.02 0.00 0.00 2.83
1585 1772 4.988708 AGCTTTGTTGTTGTTGTTGTTG 57.011 36.364 0.00 0.00 0.00 3.33
1586 1773 4.376146 AGCTTTGTTGTTGTTGTTGTTGT 58.624 34.783 0.00 0.00 0.00 3.32
1587 1774 4.813697 AGCTTTGTTGTTGTTGTTGTTGTT 59.186 33.333 0.00 0.00 0.00 2.83
1588 1775 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
1589 1776 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
1590 1777 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
1591 1778 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1592 1779 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1593 1780 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1594 1781 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1595 1782 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1596 1783 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1597 1784 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1598 1785 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1599 1786 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1600 1787 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1620 1807 1.935873 GTTAGCGGGGGATTCGTTTAC 59.064 52.381 0.00 0.00 0.00 2.01
1630 1817 4.266714 GGGATTCGTTTACCCATTTCTGA 58.733 43.478 0.00 0.00 42.81 3.27
1636 1823 5.680619 TCGTTTACCCATTTCTGATGCTAT 58.319 37.500 0.00 0.00 0.00 2.97
1681 1868 5.065914 TGATGACTGAATAATTAGCCTGGC 58.934 41.667 11.65 11.65 0.00 4.85
1699 1886 1.194218 GCTGGTTTTACATGGCCCAT 58.806 50.000 0.00 0.00 0.00 4.00
1720 1907 6.239543 CCCATGTTAAATAGCCAATTATGCCA 60.240 38.462 0.00 0.00 0.00 4.92
1782 1969 7.973944 GTCTTGGACAGTTCTTTTAATGTTGTT 59.026 33.333 0.00 0.00 32.09 2.83
1867 2054 7.969536 ATATAGTTGTTATGGTTAGCTGCAG 57.030 36.000 10.11 10.11 0.00 4.41
2338 2525 3.268023 ACAATCGATCCCTCAAAGGAC 57.732 47.619 0.00 0.00 39.24 3.85
2524 2711 3.967467 AGAAGCTTGGATGGGATTGAT 57.033 42.857 2.10 0.00 0.00 2.57
2677 2864 0.236187 GGTCGTTTGCGTGTATTGCA 59.764 50.000 0.00 0.00 41.38 4.08
2773 2960 5.063691 TGTTACATTCCGCATTAACCTAACG 59.936 40.000 0.00 0.00 0.00 3.18
3040 3232 5.359194 TTGTAGAGGGCTCCATTTCTAAG 57.641 43.478 0.00 0.00 0.00 2.18
3043 3235 6.143915 TGTAGAGGGCTCCATTTCTAAGTAT 58.856 40.000 0.00 0.00 0.00 2.12
3045 3237 6.673839 AGAGGGCTCCATTTCTAAGTATAC 57.326 41.667 0.00 0.00 0.00 1.47
3090 3282 3.885724 TCTCGGAAATGTCACAGCATA 57.114 42.857 0.00 0.00 0.00 3.14
3107 3299 8.700973 TCACAGCATAATACTGTATTAGTTGGA 58.299 33.333 21.05 16.00 46.44 3.53
3141 3333 5.047847 GGGCTTTGAAACACTTCCTAAAAC 58.952 41.667 0.00 0.00 0.00 2.43
3783 3977 1.594862 GAGAATGCTGATGTGGTACGC 59.405 52.381 0.00 0.00 40.62 4.42
3834 4028 5.965922 GCCAAAAGCACTAATGTAAATCCT 58.034 37.500 0.00 0.00 42.97 3.24
3965 4159 1.888512 TGGAAGCATCTCCAACAAAGC 59.111 47.619 0.03 0.00 42.69 3.51
3991 4185 3.915437 AAACAGTTGATACAAAGCCCG 57.085 42.857 0.00 0.00 0.00 6.13
4006 4200 3.114616 CCGTCACTTGGAGCAGCG 61.115 66.667 0.00 0.00 0.00 5.18
4246 4440 0.250901 CAGTACCAGTGCAAAGCCCT 60.251 55.000 0.00 0.00 0.00 5.19
4256 4450 1.133637 TGCAAAGCCCTACACTGGAAA 60.134 47.619 0.00 0.00 0.00 3.13
4445 4639 5.424757 CATGAGTAAGGTACAAATCGGGAA 58.575 41.667 0.00 0.00 0.00 3.97
4478 4672 5.454966 AGAAAACCCATGACCAGTAACTTT 58.545 37.500 0.00 0.00 0.00 2.66
4490 4684 6.096141 TGACCAGTAACTTTTTCATCAAAGCA 59.904 34.615 0.00 0.00 37.28 3.91
4532 4726 6.761714 GGAGAGGCATATTCTTTTTCGTTAGA 59.238 38.462 0.00 0.00 0.00 2.10
4533 4727 7.442666 GGAGAGGCATATTCTTTTTCGTTAGAT 59.557 37.037 0.00 0.00 0.00 1.98
4534 4728 8.738645 AGAGGCATATTCTTTTTCGTTAGATT 57.261 30.769 0.00 0.00 0.00 2.40
4535 4729 9.178758 AGAGGCATATTCTTTTTCGTTAGATTT 57.821 29.630 0.00 0.00 0.00 2.17
4536 4730 9.226345 GAGGCATATTCTTTTTCGTTAGATTTG 57.774 33.333 0.00 0.00 0.00 2.32
4537 4731 8.739972 AGGCATATTCTTTTTCGTTAGATTTGT 58.260 29.630 0.00 0.00 0.00 2.83
4538 4732 9.997482 GGCATATTCTTTTTCGTTAGATTTGTA 57.003 29.630 0.00 0.00 0.00 2.41
4582 4776 9.502145 TTGTTACGAGGTTAATAACTACGTATG 57.498 33.333 22.97 0.00 41.00 2.39
4749 4945 8.408601 GGACAAATTGTATTAATGCTCACAGAT 58.591 33.333 0.00 0.00 0.00 2.90
4794 5507 5.126396 ACATTCTTTTAGACTTTGGCTGC 57.874 39.130 0.00 0.00 0.00 5.25
4834 5547 8.490311 TCCACTGGAATGTATGTAAATATGTGA 58.510 33.333 0.00 0.00 0.00 3.58
4922 5637 0.179181 CTGGCTGCGCACAACATTAG 60.179 55.000 5.66 0.00 0.00 1.73
4926 5641 1.978782 GCTGCGCACAACATTAGTTTC 59.021 47.619 5.66 0.00 35.28 2.78
4976 5691 5.805728 AGTTCAACCTACTTGTAAGGATGG 58.194 41.667 0.00 0.00 37.47 3.51
5021 5736 5.307196 GGAGGGTCTAGCTTGGTATGAAATA 59.693 44.000 0.00 0.00 0.00 1.40
5029 5744 9.658799 TCTAGCTTGGTATGAAATATTGATAGC 57.341 33.333 0.00 8.84 0.00 2.97
5031 5746 7.465116 AGCTTGGTATGAAATATTGATAGCCT 58.535 34.615 11.59 3.37 0.00 4.58
5033 5748 8.025445 GCTTGGTATGAAATATTGATAGCCTTG 58.975 37.037 11.59 5.98 0.00 3.61
5034 5749 8.995027 TTGGTATGAAATATTGATAGCCTTGT 57.005 30.769 11.59 0.00 0.00 3.16
5041 5756 8.213679 TGAAATATTGATAGCCTTGTAAGAGCT 58.786 33.333 10.80 10.80 36.77 4.09
5063 5778 2.766828 TCTCTAGCAGACCCCTTTTAGC 59.233 50.000 0.00 0.00 0.00 3.09
5064 5779 1.480954 TCTAGCAGACCCCTTTTAGCG 59.519 52.381 0.00 0.00 0.00 4.26
5068 5783 2.046604 GACCCCTTTTAGCGGCGT 60.047 61.111 9.37 0.00 0.00 5.68
5076 5791 2.063266 CTTTTAGCGGCGTGAACTGTA 58.937 47.619 9.37 0.00 0.00 2.74
5095 5810 6.343703 ACTGTAAAAATCCGGTGACTATACC 58.656 40.000 0.00 0.00 37.37 2.73
5096 5811 6.070653 ACTGTAAAAATCCGGTGACTATACCA 60.071 38.462 0.00 0.00 40.89 3.25
5129 5873 2.049063 GGGCCAGAGCGCGTATAG 60.049 66.667 8.43 0.00 42.59 1.31
5130 5874 2.728817 GGCCAGAGCGCGTATAGT 59.271 61.111 8.43 0.00 41.24 2.12
5131 5875 1.371881 GGCCAGAGCGCGTATAGTC 60.372 63.158 8.43 0.00 41.24 2.59
5132 5876 1.726322 GCCAGAGCGCGTATAGTCG 60.726 63.158 8.43 0.00 0.00 4.18
5154 5898 2.033675 CCCGGCCCGTAAATGATTTTAC 59.966 50.000 0.85 0.00 42.44 2.01
5155 5899 2.683867 CCGGCCCGTAAATGATTTTACA 59.316 45.455 0.85 0.00 44.91 2.41
5161 5905 4.398044 CCCGTAAATGATTTTACAGTGGCT 59.602 41.667 0.00 0.00 44.91 4.75
5162 5906 5.105917 CCCGTAAATGATTTTACAGTGGCTT 60.106 40.000 0.00 0.00 44.91 4.35
5163 5907 5.799936 CCGTAAATGATTTTACAGTGGCTTG 59.200 40.000 0.00 0.00 44.91 4.01
5170 5914 1.769026 TTACAGTGGCTTGCAAACCA 58.231 45.000 17.61 17.61 0.00 3.67
5175 5919 1.229927 TGGCTTGCAAACCACCTCT 59.770 52.632 17.61 0.00 0.00 3.69
5186 5930 3.775654 CACCTCTCTCCCCCACGC 61.776 72.222 0.00 0.00 0.00 5.34
5205 5949 3.382546 ACGCGGTATATCTACAGGTTTGT 59.617 43.478 12.47 0.00 41.39 2.83
5211 5956 2.961526 ATCTACAGGTTTGTCGCGAT 57.038 45.000 14.06 0.00 38.76 4.58
5221 5966 0.746063 TTGTCGCGATTATACGGGGT 59.254 50.000 14.06 0.00 44.19 4.95
5238 5983 3.471354 GTGAAACCCTATCCACCGG 57.529 57.895 0.00 0.00 0.00 5.28
5239 5984 0.616891 GTGAAACCCTATCCACCGGT 59.383 55.000 0.00 0.00 0.00 5.28
5240 5985 1.003928 GTGAAACCCTATCCACCGGTT 59.996 52.381 2.97 0.00 41.68 4.44
5245 5990 2.582436 CTATCCACCGGTTGCCGT 59.418 61.111 2.97 0.00 46.80 5.68
5249 5994 1.618876 ATCCACCGGTTGCCGTGATA 61.619 55.000 2.97 0.00 46.80 2.15
5250 5995 2.104253 CCACCGGTTGCCGTGATAC 61.104 63.158 2.97 0.00 46.80 2.24
5251 5996 1.374885 CACCGGTTGCCGTGATACA 60.375 57.895 2.97 0.00 46.80 2.29
5263 6008 1.762957 CGTGATACACCAATCCCCTCT 59.237 52.381 0.00 0.00 0.00 3.69
5264 6009 2.170607 CGTGATACACCAATCCCCTCTT 59.829 50.000 0.00 0.00 0.00 2.85
5266 6011 2.434336 TGATACACCAATCCCCTCTTCG 59.566 50.000 0.00 0.00 0.00 3.79
5274 6019 3.879892 CCAATCCCCTCTTCGATTTTCTC 59.120 47.826 0.00 0.00 0.00 2.87
5295 6040 2.237751 CGCCGGTGAGCTAAATCCG 61.238 63.158 10.20 10.15 42.22 4.18
5362 6108 4.821589 GGCGGCGAAGACCTGGAG 62.822 72.222 12.98 0.00 0.00 3.86
5363 6109 4.070552 GCGGCGAAGACCTGGAGT 62.071 66.667 12.98 0.00 0.00 3.85
5364 6110 2.125912 CGGCGAAGACCTGGAGTG 60.126 66.667 0.00 0.00 0.00 3.51
5365 6111 2.435059 GGCGAAGACCTGGAGTGC 60.435 66.667 0.00 0.00 0.00 4.40
5366 6112 2.343758 GCGAAGACCTGGAGTGCA 59.656 61.111 0.00 0.00 0.00 4.57
5367 6113 1.301716 GCGAAGACCTGGAGTGCAA 60.302 57.895 0.00 0.00 0.00 4.08
5368 6114 1.294659 GCGAAGACCTGGAGTGCAAG 61.295 60.000 0.00 0.00 0.00 4.01
5369 6115 1.294659 CGAAGACCTGGAGTGCAAGC 61.295 60.000 0.00 0.00 0.00 4.01
5370 6116 1.294659 GAAGACCTGGAGTGCAAGCG 61.295 60.000 0.00 0.00 0.00 4.68
5371 6117 2.031163 GACCTGGAGTGCAAGCGT 59.969 61.111 0.00 0.00 0.00 5.07
5372 6118 1.598130 GACCTGGAGTGCAAGCGTT 60.598 57.895 0.00 0.00 0.00 4.84
5373 6119 1.569479 GACCTGGAGTGCAAGCGTTC 61.569 60.000 0.00 0.00 0.00 3.95
5374 6120 2.328099 CCTGGAGTGCAAGCGTTCC 61.328 63.158 7.47 7.47 0.00 3.62
5375 6121 2.664851 TGGAGTGCAAGCGTTCCG 60.665 61.111 9.22 0.00 32.27 4.30
5376 6122 2.665185 GGAGTGCAAGCGTTCCGT 60.665 61.111 0.00 0.00 0.00 4.69
5377 6123 2.668280 GGAGTGCAAGCGTTCCGTC 61.668 63.158 0.00 0.00 0.00 4.79
5378 6124 1.954146 GAGTGCAAGCGTTCCGTCA 60.954 57.895 0.00 0.00 0.00 4.35
5379 6125 1.291877 GAGTGCAAGCGTTCCGTCAT 61.292 55.000 0.00 0.00 0.00 3.06
5380 6126 1.132640 GTGCAAGCGTTCCGTCATC 59.867 57.895 0.00 0.00 0.00 2.92
5381 6127 2.379634 TGCAAGCGTTCCGTCATCG 61.380 57.895 0.00 0.00 0.00 3.84
5382 6128 2.380410 GCAAGCGTTCCGTCATCGT 61.380 57.895 0.00 0.00 35.01 3.73
5383 6129 1.702299 CAAGCGTTCCGTCATCGTC 59.298 57.895 0.00 0.00 35.01 4.20
5384 6130 1.800315 AAGCGTTCCGTCATCGTCG 60.800 57.895 0.00 0.00 35.01 5.12
5385 6131 2.191354 AAGCGTTCCGTCATCGTCGA 62.191 55.000 0.00 0.00 35.01 4.20
5386 6132 2.494591 GCGTTCCGTCATCGTCGAC 61.495 63.158 5.18 5.18 35.01 4.20
5410 6156 4.093952 CGCAAGCAACGCAGGGAG 62.094 66.667 0.00 0.00 0.00 4.30
5411 6157 4.410743 GCAAGCAACGCAGGGAGC 62.411 66.667 0.00 0.00 40.87 4.70
5412 6158 2.670934 CAAGCAACGCAGGGAGCT 60.671 61.111 0.00 0.00 42.61 4.09
5413 6159 2.359230 AAGCAACGCAGGGAGCTC 60.359 61.111 4.71 4.71 42.61 4.09
5414 6160 2.888447 AAGCAACGCAGGGAGCTCT 61.888 57.895 14.64 0.00 42.61 4.09
5415 6161 2.359230 GCAACGCAGGGAGCTCTT 60.359 61.111 14.64 0.00 42.61 2.85
5416 6162 2.394563 GCAACGCAGGGAGCTCTTC 61.395 63.158 14.64 6.59 42.61 2.87
5417 6163 1.743252 CAACGCAGGGAGCTCTTCC 60.743 63.158 14.64 7.34 46.00 3.46
5424 6170 4.821589 GGAGCTCTTCCGGCGTGG 62.822 72.222 14.64 0.00 35.91 4.94
5425 6171 4.821589 GAGCTCTTCCGGCGTGGG 62.822 72.222 6.43 0.00 38.76 4.61
5428 6174 4.148825 CTCTTCCGGCGTGGGGAG 62.149 72.222 6.01 4.16 38.76 4.30
5434 6180 4.821589 CGGCGTGGGGAGCTCTTC 62.822 72.222 14.64 6.79 34.52 2.87
5435 6181 4.821589 GGCGTGGGGAGCTCTTCG 62.822 72.222 14.64 13.55 34.52 3.79
5436 6182 4.821589 GCGTGGGGAGCTCTTCGG 62.822 72.222 14.64 0.95 0.00 4.30
5437 6183 4.148825 CGTGGGGAGCTCTTCGGG 62.149 72.222 14.64 0.00 0.00 5.14
5438 6184 3.003763 GTGGGGAGCTCTTCGGGT 61.004 66.667 14.64 0.00 0.00 5.28
5439 6185 3.003173 TGGGGAGCTCTTCGGGTG 61.003 66.667 14.64 0.00 0.00 4.61
5440 6186 4.475135 GGGGAGCTCTTCGGGTGC 62.475 72.222 14.64 0.00 34.96 5.01
5441 6187 4.821589 GGGAGCTCTTCGGGTGCG 62.822 72.222 14.64 0.00 39.18 5.34
5443 6189 4.443266 GAGCTCTTCGGGTGCGCT 62.443 66.667 9.73 0.00 39.18 5.92
5444 6190 4.749310 AGCTCTTCGGGTGCGCTG 62.749 66.667 9.73 0.00 39.18 5.18
5446 6192 4.749310 CTCTTCGGGTGCGCTGCT 62.749 66.667 9.73 0.00 0.00 4.24
5454 6200 4.099170 GTGCGCTGCTGCTTCCAG 62.099 66.667 9.73 0.00 42.13 3.86
5455 6201 4.631247 TGCGCTGCTGCTTCCAGT 62.631 61.111 9.73 0.00 41.26 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 5.368145 AGATTGAAGTAAACTCACACAGCA 58.632 37.500 0.00 0.00 0.00 4.41
26 27 9.871238 TGGATGTAGTAAGATTGAAGTAAACTC 57.129 33.333 0.00 0.00 0.00 3.01
44 45 0.731417 GCTTGCACTGCTGGATGTAG 59.269 55.000 1.98 0.00 0.00 2.74
51 52 2.180131 GAACCTCGCTTGCACTGCTG 62.180 60.000 1.98 0.00 0.00 4.41
56 57 1.569479 GGACTGAACCTCGCTTGCAC 61.569 60.000 0.00 0.00 0.00 4.57
72 73 1.076332 AGTCGCAATACGCTTTGGAC 58.924 50.000 9.51 9.51 43.23 4.02
88 89 0.162294 CGTTTACGGCCGAAACAGTC 59.838 55.000 32.65 18.32 36.74 3.51
93 94 1.789116 GATGCGTTTACGGCCGAAA 59.211 52.632 35.90 23.71 40.23 3.46
122 123 2.549329 GCTGCAACAAAGGGAAAATTGG 59.451 45.455 0.00 0.00 0.00 3.16
130 132 2.159057 ACTTTCTTGCTGCAACAAAGGG 60.159 45.455 32.00 18.45 34.99 3.95
137 139 2.360801 GGTGGTAACTTTCTTGCTGCAA 59.639 45.455 15.16 15.16 37.61 4.08
138 140 1.953686 GGTGGTAACTTTCTTGCTGCA 59.046 47.619 0.00 0.00 37.61 4.41
157 159 3.551863 GGAGCTGTTATCAGAGATCACGG 60.552 52.174 4.94 0.00 43.76 4.94
158 160 3.637432 GGAGCTGTTATCAGAGATCACG 58.363 50.000 4.94 0.00 43.76 4.35
159 161 3.316588 TCGGAGCTGTTATCAGAGATCAC 59.683 47.826 4.94 0.00 43.76 3.06
180 182 1.230324 GTGCACTTGAAGGACCTGTC 58.770 55.000 10.32 0.00 0.00 3.51
184 186 0.890996 CCAGGTGCACTTGAAGGACC 60.891 60.000 28.75 3.10 46.60 4.46
195 197 1.957668 CATGATTCGATCCAGGTGCA 58.042 50.000 0.00 0.00 0.00 4.57
199 201 3.055209 AGATGCATGATTCGATCCAGG 57.945 47.619 2.46 0.00 0.00 4.45
201 203 4.605640 TGTAGATGCATGATTCGATCCA 57.394 40.909 2.46 0.00 0.00 3.41
212 214 8.687292 ATATGTCAAGTTGAATGTAGATGCAT 57.313 30.769 7.25 0.00 0.00 3.96
245 247 1.352114 TGTACGATGCGTTTACAGCC 58.648 50.000 0.00 0.00 41.54 4.85
248 250 7.752557 TTAACATATGTACGATGCGTTTACA 57.247 32.000 9.21 0.00 41.54 2.41
270 273 6.820656 TCTTGTTGCAGCAAAGGAAAATTTTA 59.179 30.769 17.06 0.00 0.00 1.52
273 276 4.768583 TCTTGTTGCAGCAAAGGAAAATT 58.231 34.783 17.06 0.00 0.00 1.82
274 277 4.405116 TCTTGTTGCAGCAAAGGAAAAT 57.595 36.364 17.06 0.00 0.00 1.82
290 293 4.586001 AGATCACAATGGCAACTTTCTTGT 59.414 37.500 0.00 0.00 37.61 3.16
301 304 5.039333 GCTGTTATCAAAGATCACAATGGC 58.961 41.667 0.00 0.00 0.00 4.40
303 306 6.493116 GGAGCTGTTATCAAAGATCACAATG 58.507 40.000 0.00 0.00 30.36 2.82
314 317 3.585862 GACTTGTCGGAGCTGTTATCAA 58.414 45.455 0.00 0.00 0.00 2.57
344 347 1.764723 TGCAGGATTCGATCTGGATGT 59.235 47.619 11.24 0.00 0.00 3.06
350 353 5.245751 AGAATGTAGATGCAGGATTCGATCT 59.754 40.000 0.00 0.00 0.00 2.75
352 355 5.480642 AGAATGTAGATGCAGGATTCGAT 57.519 39.130 0.00 0.00 0.00 3.59
355 358 7.170658 GTCAAGTAGAATGTAGATGCAGGATTC 59.829 40.741 0.00 0.00 0.00 2.52
374 377 4.794981 GCCGACGAATGGATATGTCAAGTA 60.795 45.833 0.00 0.00 0.00 2.24
404 407 4.224370 TCCCAAGATACAAGTAGGTGGTTC 59.776 45.833 0.00 0.00 0.00 3.62
421 424 2.787473 TTACTGCATGTCCTCCCAAG 57.213 50.000 0.00 0.00 0.00 3.61
423 426 2.195727 TCATTACTGCATGTCCTCCCA 58.804 47.619 0.00 0.00 0.00 4.37
424 427 3.209410 CTTCATTACTGCATGTCCTCCC 58.791 50.000 0.00 0.00 0.00 4.30
429 432 5.627499 TCCAAACTTCATTACTGCATGTC 57.373 39.130 0.00 0.00 0.00 3.06
450 453 7.484975 TCTTGAACTAGCAAGAGTATTAGCTC 58.515 38.462 8.29 0.00 46.73 4.09
464 467 5.931441 ACACATGTCTTTCTTGAACTAGC 57.069 39.130 0.00 0.00 0.00 3.42
510 513 9.063615 AGGTGAAATGAAAATCTTAAGTACGTT 57.936 29.630 1.63 0.00 0.00 3.99
512 515 9.893305 AAAGGTGAAATGAAAATCTTAAGTACG 57.107 29.630 1.63 0.00 0.00 3.67
517 520 9.981114 GGAAGAAAGGTGAAATGAAAATCTTAA 57.019 29.630 0.00 0.00 0.00 1.85
518 521 8.585018 GGGAAGAAAGGTGAAATGAAAATCTTA 58.415 33.333 0.00 0.00 0.00 2.10
519 522 7.071071 TGGGAAGAAAGGTGAAATGAAAATCTT 59.929 33.333 0.00 0.00 0.00 2.40
520 523 6.554605 TGGGAAGAAAGGTGAAATGAAAATCT 59.445 34.615 0.00 0.00 0.00 2.40
521 524 6.646653 GTGGGAAGAAAGGTGAAATGAAAATC 59.353 38.462 0.00 0.00 0.00 2.17
522 525 6.464322 GGTGGGAAGAAAGGTGAAATGAAAAT 60.464 38.462 0.00 0.00 0.00 1.82
523 526 5.163353 GGTGGGAAGAAAGGTGAAATGAAAA 60.163 40.000 0.00 0.00 0.00 2.29
525 528 3.895041 GGTGGGAAGAAAGGTGAAATGAA 59.105 43.478 0.00 0.00 0.00 2.57
526 529 3.117322 TGGTGGGAAGAAAGGTGAAATGA 60.117 43.478 0.00 0.00 0.00 2.57
527 530 3.230134 TGGTGGGAAGAAAGGTGAAATG 58.770 45.455 0.00 0.00 0.00 2.32
528 531 3.611025 TGGTGGGAAGAAAGGTGAAAT 57.389 42.857 0.00 0.00 0.00 2.17
533 536 0.328258 CGGATGGTGGGAAGAAAGGT 59.672 55.000 0.00 0.00 0.00 3.50
534 537 0.328258 ACGGATGGTGGGAAGAAAGG 59.672 55.000 0.00 0.00 0.00 3.11
535 538 1.679032 GGACGGATGGTGGGAAGAAAG 60.679 57.143 0.00 0.00 0.00 2.62
536 539 0.326927 GGACGGATGGTGGGAAGAAA 59.673 55.000 0.00 0.00 0.00 2.52
537 540 1.895020 CGGACGGATGGTGGGAAGAA 61.895 60.000 0.00 0.00 0.00 2.52
538 541 2.355986 CGGACGGATGGTGGGAAGA 61.356 63.158 0.00 0.00 0.00 2.87
539 542 2.186903 CGGACGGATGGTGGGAAG 59.813 66.667 0.00 0.00 0.00 3.46
541 544 3.072468 GACGGACGGATGGTGGGA 61.072 66.667 0.00 0.00 0.00 4.37
542 545 4.157120 GGACGGACGGATGGTGGG 62.157 72.222 0.00 0.00 0.00 4.61
543 546 2.949909 TTGGACGGACGGATGGTGG 61.950 63.158 0.00 0.00 0.00 4.61
544 547 1.740296 GTTGGACGGACGGATGGTG 60.740 63.158 0.00 0.00 0.00 4.17
545 548 2.660802 GTTGGACGGACGGATGGT 59.339 61.111 0.00 0.00 0.00 3.55
546 549 2.125269 GGTTGGACGGACGGATGG 60.125 66.667 0.00 0.00 0.00 3.51
547 550 0.739813 GAAGGTTGGACGGACGGATG 60.740 60.000 0.00 0.00 0.00 3.51
548 551 1.595357 GAAGGTTGGACGGACGGAT 59.405 57.895 0.00 0.00 0.00 4.18
549 552 2.576832 GGAAGGTTGGACGGACGGA 61.577 63.158 0.00 0.00 0.00 4.69
551 554 1.019278 CATGGAAGGTTGGACGGACG 61.019 60.000 0.00 0.00 0.00 4.79
552 555 0.036306 ACATGGAAGGTTGGACGGAC 59.964 55.000 0.00 0.00 0.00 4.79
553 556 1.646912 TACATGGAAGGTTGGACGGA 58.353 50.000 0.00 0.00 28.09 4.69
555 558 4.956085 TCATATACATGGAAGGTTGGACG 58.044 43.478 0.00 0.00 32.61 4.79
556 559 9.167311 GATTATCATATACATGGAAGGTTGGAC 57.833 37.037 0.00 0.00 32.61 4.02
558 561 9.519191 TTGATTATCATATACATGGAAGGTTGG 57.481 33.333 0.00 0.00 32.61 3.77
622 625 7.093992 AGGTTGTCTGTTTTCGAAAAATGAAA 58.906 30.769 24.04 16.44 33.73 2.69
764 935 1.002142 GTGGGTGTTGCGTTCTTTACC 60.002 52.381 0.00 0.00 0.00 2.85
800 974 3.900892 GGCGATCGAGGCGAAGGA 61.901 66.667 21.57 0.00 39.99 3.36
864 1041 1.002011 GGGAGGCTCCAAGTTGGTC 60.002 63.158 33.27 10.98 38.64 4.02
1252 1434 3.468850 GGGGGATGGAAGGATCAGATAT 58.531 50.000 0.00 0.00 0.00 1.63
1409 1591 1.174783 GGAGCTGACCAGTTAGTCGA 58.825 55.000 0.00 0.00 39.77 4.20
1415 1597 1.972872 CAACAAGGAGCTGACCAGTT 58.027 50.000 0.00 0.00 33.21 3.16
1468 1650 1.983119 ATGCACCCACCATAGGTCCG 61.983 60.000 0.00 0.00 34.56 4.79
1474 1656 6.382859 CCTATATACTACATGCACCCACCATA 59.617 42.308 0.00 0.00 0.00 2.74
1526 1713 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
1527 1714 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
1530 1717 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
1531 1718 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
1532 1719 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
1534 1721 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
1535 1722 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
1537 1724 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
1546 1733 4.918810 AGCTTTAGTCCCAAACAAGTTG 57.081 40.909 0.00 0.00 36.94 3.16
1547 1734 5.186992 ACAAAGCTTTAGTCCCAAACAAGTT 59.813 36.000 12.25 0.00 0.00 2.66
1548 1735 4.709886 ACAAAGCTTTAGTCCCAAACAAGT 59.290 37.500 12.25 0.00 0.00 3.16
1549 1736 5.262588 ACAAAGCTTTAGTCCCAAACAAG 57.737 39.130 12.25 0.00 0.00 3.16
1550 1737 5.046950 ACAACAAAGCTTTAGTCCCAAACAA 60.047 36.000 12.25 0.00 0.00 2.83
1551 1738 4.464597 ACAACAAAGCTTTAGTCCCAAACA 59.535 37.500 12.25 0.00 0.00 2.83
1552 1739 5.006153 ACAACAAAGCTTTAGTCCCAAAC 57.994 39.130 12.25 0.00 0.00 2.93
1553 1740 5.046950 ACAACAACAAAGCTTTAGTCCCAAA 60.047 36.000 12.25 0.00 0.00 3.28
1554 1741 4.464597 ACAACAACAAAGCTTTAGTCCCAA 59.535 37.500 12.25 0.00 0.00 4.12
1555 1742 4.020543 ACAACAACAAAGCTTTAGTCCCA 58.979 39.130 12.25 0.00 0.00 4.37
1556 1743 4.649088 ACAACAACAAAGCTTTAGTCCC 57.351 40.909 12.25 0.00 0.00 4.46
1557 1744 5.407502 ACAACAACAACAAAGCTTTAGTCC 58.592 37.500 12.25 0.00 0.00 3.85
1558 1745 6.364976 ACAACAACAACAACAAAGCTTTAGTC 59.635 34.615 12.25 0.00 0.00 2.59
1559 1746 6.220201 ACAACAACAACAACAAAGCTTTAGT 58.780 32.000 12.25 9.69 0.00 2.24
1560 1747 6.704512 ACAACAACAACAACAAAGCTTTAG 57.295 33.333 12.25 9.05 0.00 1.85
1561 1748 6.480320 ACAACAACAACAACAACAAAGCTTTA 59.520 30.769 12.25 0.00 0.00 1.85
1562 1749 5.295540 ACAACAACAACAACAACAAAGCTTT 59.704 32.000 5.69 5.69 0.00 3.51
1563 1750 4.813697 ACAACAACAACAACAACAAAGCTT 59.186 33.333 0.00 0.00 0.00 3.74
1564 1751 4.376146 ACAACAACAACAACAACAAAGCT 58.624 34.783 0.00 0.00 0.00 3.74
1565 1752 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
1566 1753 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
1567 1754 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
1568 1755 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
1569 1756 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
1570 1757 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
1571 1758 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
1572 1759 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
1573 1760 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
1574 1761 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
1575 1762 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
1576 1763 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
1577 1764 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
1578 1765 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
1579 1766 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
1580 1767 6.292381 GCTAACAACAACAACAACAACAACAA 60.292 34.615 0.00 0.00 0.00 2.83
1581 1768 5.175856 GCTAACAACAACAACAACAACAACA 59.824 36.000 0.00 0.00 0.00 3.33
1582 1769 5.604389 GCTAACAACAACAACAACAACAAC 58.396 37.500 0.00 0.00 0.00 3.32
1583 1770 4.383052 CGCTAACAACAACAACAACAACAA 59.617 37.500 0.00 0.00 0.00 2.83
1584 1771 3.914966 CGCTAACAACAACAACAACAACA 59.085 39.130 0.00 0.00 0.00 3.33
1585 1772 3.302170 CCGCTAACAACAACAACAACAAC 59.698 43.478 0.00 0.00 0.00 3.32
1586 1773 3.502920 CCGCTAACAACAACAACAACAA 58.497 40.909 0.00 0.00 0.00 2.83
1587 1774 2.159366 CCCGCTAACAACAACAACAACA 60.159 45.455 0.00 0.00 0.00 3.33
1588 1775 2.456010 CCCGCTAACAACAACAACAAC 58.544 47.619 0.00 0.00 0.00 3.32
1589 1776 1.405821 CCCCGCTAACAACAACAACAA 59.594 47.619 0.00 0.00 0.00 2.83
1590 1777 1.025812 CCCCGCTAACAACAACAACA 58.974 50.000 0.00 0.00 0.00 3.33
1591 1778 0.312729 CCCCCGCTAACAACAACAAC 59.687 55.000 0.00 0.00 0.00 3.32
1592 1779 0.183014 TCCCCCGCTAACAACAACAA 59.817 50.000 0.00 0.00 0.00 2.83
1593 1780 0.402504 ATCCCCCGCTAACAACAACA 59.597 50.000 0.00 0.00 0.00 3.33
1594 1781 1.471287 GAATCCCCCGCTAACAACAAC 59.529 52.381 0.00 0.00 0.00 3.32
1595 1782 1.828979 GAATCCCCCGCTAACAACAA 58.171 50.000 0.00 0.00 0.00 2.83
1596 1783 0.391927 CGAATCCCCCGCTAACAACA 60.392 55.000 0.00 0.00 0.00 3.33
1597 1784 0.392060 ACGAATCCCCCGCTAACAAC 60.392 55.000 0.00 0.00 0.00 3.32
1598 1785 0.325602 AACGAATCCCCCGCTAACAA 59.674 50.000 0.00 0.00 0.00 2.83
1599 1786 0.325602 AAACGAATCCCCCGCTAACA 59.674 50.000 0.00 0.00 0.00 2.41
1600 1787 1.935873 GTAAACGAATCCCCCGCTAAC 59.064 52.381 0.00 0.00 0.00 2.34
1620 1807 2.895404 CCCCAATAGCATCAGAAATGGG 59.105 50.000 0.00 0.00 44.53 4.00
1630 1817 3.992999 TGATGTTTTCCCCCAATAGCAT 58.007 40.909 0.00 0.00 0.00 3.79
1636 1823 5.045578 TCAAAAAGTTGATGTTTTCCCCCAA 60.046 36.000 0.00 0.00 38.88 4.12
1670 1857 3.773560 TGTAAAACCAGCCAGGCTAATT 58.226 40.909 15.64 8.71 43.14 1.40
1681 1868 2.965572 CATGGGCCATGTAAAACCAG 57.034 50.000 33.65 9.20 37.12 4.00
1845 2032 4.576463 GCTGCAGCTAACCATAACAACTAT 59.424 41.667 31.33 0.00 38.21 2.12
1846 2033 3.938963 GCTGCAGCTAACCATAACAACTA 59.061 43.478 31.33 0.00 38.21 2.24
2281 2468 8.139989 AGGACATTTTCAAGTTTCAAATCTGAG 58.860 33.333 0.00 0.00 31.69 3.35
2338 2525 1.682451 TAAGTCCGGAGCGAATGGGG 61.682 60.000 3.06 0.00 0.00 4.96
2392 2579 2.347731 GGGTTAAGAACAGCTTCTCCG 58.652 52.381 0.00 0.00 35.52 4.63
2498 2685 1.475682 CCCATCCAAGCTTCTTTCTGC 59.524 52.381 0.00 0.00 0.00 4.26
2524 2711 8.407832 CCAAAATCTACAATCTTGCATGTCATA 58.592 33.333 0.00 0.00 0.00 2.15
2677 2864 2.690778 GCCCGTTGCGAGCTCAAAT 61.691 57.895 15.40 0.00 0.00 2.32
2747 2934 5.560966 AGGTTAATGCGGAATGTAACAAG 57.439 39.130 9.57 0.00 0.00 3.16
2773 2960 6.587226 TCAAAAGACAACATAAAGCATCATGC 59.413 34.615 0.00 0.00 45.46 4.06
2813 3000 1.175347 TACCTTGCAAATGCGCCACA 61.175 50.000 4.18 0.00 45.83 4.17
2970 3157 5.574188 AGCAAACATCCTTATCTGAAAGGT 58.426 37.500 14.22 4.46 45.37 3.50
3043 3235 9.244292 ACTGTACATTAGTCTCATCTTCTTGTA 57.756 33.333 0.00 0.00 0.00 2.41
3045 3237 8.994429 AACTGTACATTAGTCTCATCTTCTTG 57.006 34.615 0.00 0.00 0.00 3.02
3107 3299 5.353956 GTGTTTCAAAGCCCACAGAAAAATT 59.646 36.000 0.00 0.00 32.44 1.82
3391 3585 4.129380 CCCATCGTAGCAATCTGAATTCA 58.871 43.478 8.12 8.12 0.00 2.57
3660 3854 5.239359 TGCATGTTACATCAATGCTCTTC 57.761 39.130 9.58 0.00 38.88 2.87
3783 3977 2.562738 GTTGGAAATCCTTTCAGTGGGG 59.437 50.000 0.44 0.00 41.43 4.96
3823 4017 8.650143 ATTGTTCCAGTGTTAGGATTTACATT 57.350 30.769 0.00 0.00 34.56 2.71
3834 4028 8.544622 TCCTTATACATGATTGTTCCAGTGTTA 58.455 33.333 0.00 0.00 37.28 2.41
3965 4159 5.687285 GGCTTTGTATCAACTGTTTTGTCAG 59.313 40.000 0.00 0.00 40.80 3.51
3991 4185 3.426568 GGCGCTGCTCCAAGTGAC 61.427 66.667 7.64 0.00 0.00 3.67
4006 4200 1.085091 CTCTTGTCATCAGTGCTGGC 58.915 55.000 0.00 0.00 0.00 4.85
4017 4211 4.574892 TCTTTGTGTCAACACTCTTGTCA 58.425 39.130 13.94 0.00 46.55 3.58
4233 4427 0.877071 CAGTGTAGGGCTTTGCACTG 59.123 55.000 19.40 19.40 44.56 3.66
4246 4440 6.375736 TCACTGTTTTCAACATTTCCAGTGTA 59.624 34.615 14.36 2.29 45.19 2.90
4256 4450 4.261155 CCGTGACATCACTGTTTTCAACAT 60.261 41.667 10.18 0.00 44.34 2.71
4445 4639 5.765182 GGTCATGGGTTTTCTCATCGATATT 59.235 40.000 0.00 0.00 39.27 1.28
4490 4684 6.006449 GCCTCTCCACAATAAACATATCCAT 58.994 40.000 0.00 0.00 0.00 3.41
4539 4733 9.986833 CTCGTAACAAATCAATGATACAAATCA 57.013 29.630 0.00 0.00 46.01 2.57
4540 4734 9.438291 CCTCGTAACAAATCAATGATACAAATC 57.562 33.333 0.00 0.00 30.46 2.17
4581 4775 0.770499 TGATCAAGGTTGGCTCCACA 59.230 50.000 0.00 0.00 0.00 4.17
4582 4776 1.815003 CTTGATCAAGGTTGGCTCCAC 59.185 52.381 25.14 0.00 34.87 4.02
4749 4945 8.354711 TGTTATGTACCTTGAATGCCAAATAA 57.645 30.769 0.00 0.00 33.76 1.40
4794 5507 3.689161 TCCAGTGGAAAATGTAAGATGCG 59.311 43.478 10.20 0.00 0.00 4.73
4834 5547 5.934402 ACGTAAATCCTTGGTCTGTAGAT 57.066 39.130 0.00 0.00 0.00 1.98
4836 5549 4.630069 CCAACGTAAATCCTTGGTCTGTAG 59.370 45.833 0.00 0.00 31.39 2.74
4922 5637 6.532657 CCATTTGGCAGATTATCAACAGAAAC 59.467 38.462 0.00 0.00 0.00 2.78
4926 5641 5.840243 TCCATTTGGCAGATTATCAACAG 57.160 39.130 0.00 0.00 34.44 3.16
4931 5646 7.992754 ACTCTTATCCATTTGGCAGATTATC 57.007 36.000 0.00 0.00 34.44 1.75
4976 5691 3.427503 CCGCCAAACAAATAGATGACCAC 60.428 47.826 0.00 0.00 0.00 4.16
5021 5736 6.099557 AGAGAAGCTCTTACAAGGCTATCAAT 59.900 38.462 0.00 0.00 37.60 2.57
5041 5756 3.197983 GCTAAAAGGGGTCTGCTAGAGAA 59.802 47.826 0.00 0.00 30.26 2.87
5063 5778 2.723618 CGGATTTTTACAGTTCACGCCG 60.724 50.000 0.00 0.00 0.00 6.46
5064 5779 2.413634 CCGGATTTTTACAGTTCACGCC 60.414 50.000 0.00 0.00 0.00 5.68
5068 5783 4.710324 AGTCACCGGATTTTTACAGTTCA 58.290 39.130 9.46 0.00 0.00 3.18
5076 5791 5.431179 ACTGGTATAGTCACCGGATTTTT 57.569 39.130 9.46 0.00 46.39 1.94
5115 5859 4.516942 CGACTATACGCGCTCTGG 57.483 61.111 5.73 0.00 0.00 3.86
5123 5867 4.353437 GGGCCGGGCGACTATACG 62.353 72.222 23.19 0.00 0.00 3.06
5124 5868 4.353437 CGGGCCGGGCGACTATAC 62.353 72.222 23.19 4.91 0.00 1.47
5125 5869 2.974692 TTACGGGCCGGGCGACTATA 62.975 60.000 31.78 7.78 0.00 1.31
5126 5870 4.900704 TACGGGCCGGGCGACTAT 62.901 66.667 31.78 8.94 0.00 2.12
5129 5873 4.843719 ATTTACGGGCCGGGCGAC 62.844 66.667 31.78 8.18 0.00 5.19
5130 5874 4.841861 CATTTACGGGCCGGGCGA 62.842 66.667 31.78 13.40 0.00 5.54
5131 5875 4.841861 TCATTTACGGGCCGGGCG 62.842 66.667 31.78 19.13 0.00 6.13
5132 5876 1.388837 AAATCATTTACGGGCCGGGC 61.389 55.000 31.78 22.00 0.00 6.13
5133 5877 1.107945 AAAATCATTTACGGGCCGGG 58.892 50.000 31.78 13.76 0.00 5.73
5134 5878 3.343380 GTAAAATCATTTACGGGCCGG 57.657 47.619 31.78 12.18 40.94 6.13
5161 5905 0.110486 GGGAGAGAGGTGGTTTGCAA 59.890 55.000 0.00 0.00 0.00 4.08
5162 5906 1.761174 GGGAGAGAGGTGGTTTGCA 59.239 57.895 0.00 0.00 0.00 4.08
5163 5907 1.002011 GGGGAGAGAGGTGGTTTGC 60.002 63.158 0.00 0.00 0.00 3.68
5172 5916 3.874501 TATACCGCGTGGGGGAGAGAG 62.875 61.905 21.14 0.00 41.60 3.20
5173 5917 1.998444 TATACCGCGTGGGGGAGAGA 61.998 60.000 21.14 0.00 41.60 3.10
5175 5919 0.896940 GATATACCGCGTGGGGGAGA 60.897 60.000 21.14 1.48 41.60 3.71
5186 5930 3.979495 GCGACAAACCTGTAGATATACCG 59.021 47.826 0.00 0.00 35.30 4.02
5205 5949 1.031235 TTCACCCCGTATAATCGCGA 58.969 50.000 13.09 13.09 0.00 5.87
5221 5966 1.003812 CAACCGGTGGATAGGGTTTCA 59.996 52.381 8.52 0.00 41.93 2.69
5238 5983 1.400494 GGATTGGTGTATCACGGCAAC 59.600 52.381 0.00 0.00 34.83 4.17
5239 5984 1.680555 GGGATTGGTGTATCACGGCAA 60.681 52.381 0.00 0.00 34.83 4.52
5240 5985 0.107410 GGGATTGGTGTATCACGGCA 60.107 55.000 0.00 0.00 34.83 5.69
5244 5989 3.741388 CGAAGAGGGGATTGGTGTATCAC 60.741 52.174 0.00 0.00 0.00 3.06
5245 5990 2.434336 CGAAGAGGGGATTGGTGTATCA 59.566 50.000 0.00 0.00 0.00 2.15
5249 5994 1.584724 ATCGAAGAGGGGATTGGTGT 58.415 50.000 0.00 0.00 43.63 4.16
5250 5995 2.717639 AATCGAAGAGGGGATTGGTG 57.282 50.000 0.00 0.00 43.63 4.17
5251 5996 3.267031 AGAAAATCGAAGAGGGGATTGGT 59.733 43.478 0.00 0.00 43.63 3.67
5276 6021 1.143183 GGATTTAGCTCACCGGCGA 59.857 57.895 9.30 0.00 37.29 5.54
5306 6051 2.278857 ATCGTCGCAGATCGGTGC 60.279 61.111 1.10 0.00 40.67 5.01
5345 6091 4.821589 CTCCAGGTCTTCGCCGCC 62.822 72.222 0.00 0.00 0.00 6.13
5346 6092 4.070552 ACTCCAGGTCTTCGCCGC 62.071 66.667 0.00 0.00 0.00 6.53
5347 6093 2.125912 CACTCCAGGTCTTCGCCG 60.126 66.667 0.00 0.00 0.00 6.46
5348 6094 2.435059 GCACTCCAGGTCTTCGCC 60.435 66.667 0.00 0.00 0.00 5.54
5349 6095 1.294659 CTTGCACTCCAGGTCTTCGC 61.295 60.000 0.00 0.00 0.00 4.70
5350 6096 1.294659 GCTTGCACTCCAGGTCTTCG 61.295 60.000 0.00 0.00 0.00 3.79
5351 6097 1.294659 CGCTTGCACTCCAGGTCTTC 61.295 60.000 0.00 0.00 0.00 2.87
5352 6098 1.302033 CGCTTGCACTCCAGGTCTT 60.302 57.895 0.00 0.00 0.00 3.01
5353 6099 2.044806 AACGCTTGCACTCCAGGTCT 62.045 55.000 0.00 0.00 0.00 3.85
5354 6100 1.569479 GAACGCTTGCACTCCAGGTC 61.569 60.000 0.00 0.00 0.00 3.85
5355 6101 1.598130 GAACGCTTGCACTCCAGGT 60.598 57.895 0.00 0.00 0.00 4.00
5356 6102 2.328099 GGAACGCTTGCACTCCAGG 61.328 63.158 0.00 0.00 0.00 4.45
5357 6103 3.257933 GGAACGCTTGCACTCCAG 58.742 61.111 0.00 0.00 0.00 3.86
5393 6139 4.093952 CTCCCTGCGTTGCTTGCG 62.094 66.667 0.00 0.00 34.24 4.85
5394 6140 4.410743 GCTCCCTGCGTTGCTTGC 62.411 66.667 0.00 0.00 0.00 4.01
5403 6149 4.847444 GCCGGAAGAGCTCCCTGC 62.847 72.222 10.93 9.83 41.87 4.85
5404 6150 4.521062 CGCCGGAAGAGCTCCCTG 62.521 72.222 10.93 7.83 41.87 4.45
5406 6152 4.821589 CACGCCGGAAGAGCTCCC 62.822 72.222 10.93 4.33 41.87 4.30
5407 6153 4.821589 CCACGCCGGAAGAGCTCC 62.822 72.222 10.93 0.00 41.40 4.70
5408 6154 4.821589 CCCACGCCGGAAGAGCTC 62.822 72.222 5.05 5.27 36.56 4.09
5411 6157 4.148825 CTCCCCACGCCGGAAGAG 62.149 72.222 5.05 0.00 36.56 2.85
5417 6163 4.821589 GAAGAGCTCCCCACGCCG 62.822 72.222 10.93 0.00 0.00 6.46
5418 6164 4.821589 CGAAGAGCTCCCCACGCC 62.822 72.222 10.93 0.00 0.00 5.68
5419 6165 4.821589 CCGAAGAGCTCCCCACGC 62.822 72.222 10.93 0.00 0.00 5.34
5420 6166 4.148825 CCCGAAGAGCTCCCCACG 62.149 72.222 10.93 10.87 0.00 4.94
5421 6167 3.003763 ACCCGAAGAGCTCCCCAC 61.004 66.667 10.93 0.00 0.00 4.61
5422 6168 3.003173 CACCCGAAGAGCTCCCCA 61.003 66.667 10.93 0.00 0.00 4.96
5423 6169 4.475135 GCACCCGAAGAGCTCCCC 62.475 72.222 10.93 1.05 0.00 4.81
5424 6170 4.821589 CGCACCCGAAGAGCTCCC 62.822 72.222 10.93 1.46 36.29 4.30
5426 6172 4.443266 AGCGCACCCGAAGAGCTC 62.443 66.667 11.47 5.27 36.29 4.09
5427 6173 4.749310 CAGCGCACCCGAAGAGCT 62.749 66.667 11.47 0.00 38.90 4.09
5429 6175 4.749310 AGCAGCGCACCCGAAGAG 62.749 66.667 11.47 0.00 36.29 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.