Multiple sequence alignment - TraesCS2B01G256000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G256000 chr2B 100.000 4319 0 0 1 4319 296070404 296066086 0.000000e+00 7976.0
1 TraesCS2B01G256000 chr2B 99.080 1521 12 1 1176 2696 10586063 10584545 0.000000e+00 2730.0
2 TraesCS2B01G256000 chr2B 93.013 458 26 3 3036 3488 695410264 695409808 0.000000e+00 664.0
3 TraesCS2B01G256000 chr2B 93.275 342 17 3 3036 3372 695436951 695436611 2.320000e-137 499.0
4 TraesCS2B01G256000 chr2B 93.137 306 19 1 3373 3678 695436643 695436340 8.520000e-122 448.0
5 TraesCS2B01G256000 chr2B 86.316 380 45 7 768 1146 542673063 542673436 1.450000e-109 407.0
6 TraesCS2B01G256000 chr2B 90.686 204 18 1 4060 4262 542673803 542674006 1.980000e-68 270.0
7 TraesCS2B01G256000 chr2B 90.058 171 8 2 3759 3928 695436341 695436179 3.380000e-51 213.0
8 TraesCS2B01G256000 chr2B 97.368 114 3 0 2717 2830 25366091 25365978 1.230000e-45 195.0
9 TraesCS2B01G256000 chr2B 94.355 124 5 2 3806 3928 695409790 695409668 5.700000e-44 189.0
10 TraesCS2B01G256000 chr2B 94.643 112 5 1 2822 2933 695410366 695410256 5.740000e-39 172.0
11 TraesCS2B01G256000 chr2B 94.643 112 5 1 2822 2933 695437053 695436943 5.740000e-39 172.0
12 TraesCS2B01G256000 chr2B 94.624 93 4 1 3669 3760 58325776 58325684 4.500000e-30 143.0
13 TraesCS2B01G256000 chr2B 87.402 127 12 4 2699 2822 635761009 635761134 4.500000e-30 143.0
14 TraesCS2B01G256000 chr6A 99.212 1523 10 1 1174 2696 605336214 605334694 0.000000e+00 2745.0
15 TraesCS2B01G256000 chr6A 95.690 1021 20 3 180 1177 58305375 58306394 0.000000e+00 1620.0
16 TraesCS2B01G256000 chr6A 93.995 383 10 5 2822 3203 58306420 58306790 6.270000e-158 568.0
17 TraesCS2B01G256000 chr6A 98.077 52 1 0 4268 4319 58306790 58306841 1.650000e-14 91.6
18 TraesCS2B01G256000 chr1B 99.081 1523 14 0 1174 2696 632146236 632147758 0.000000e+00 2736.0
19 TraesCS2B01G256000 chr1B 98.598 428 5 1 2 429 26713154 26712728 0.000000e+00 756.0
20 TraesCS2B01G256000 chr1B 91.089 101 8 1 3669 3768 475170669 475170769 7.530000e-28 135.0
21 TraesCS2B01G256000 chr1B 91.089 101 8 1 3669 3768 590578893 590578993 7.530000e-28 135.0
22 TraesCS2B01G256000 chrUn 99.080 1522 12 1 1175 2696 71105081 71106600 0.000000e+00 2732.0
23 TraesCS2B01G256000 chrUn 99.080 1522 12 1 1175 2696 281488230 281486711 0.000000e+00 2732.0
24 TraesCS2B01G256000 chr7A 98.949 1523 14 1 1174 2696 549107518 549109038 0.000000e+00 2723.0
25 TraesCS2B01G256000 chr7A 95.833 1200 27 2 1 1177 296602917 296604116 0.000000e+00 1917.0
26 TraesCS2B01G256000 chr7A 95.341 1202 31 3 1 1177 305710255 305709054 0.000000e+00 1886.0
27 TraesCS2B01G256000 chr7A 95.708 1095 24 2 1 1072 299575303 299574209 0.000000e+00 1740.0
28 TraesCS2B01G256000 chr7A 95.571 858 15 10 2822 3678 296604142 296604977 0.000000e+00 1352.0
29 TraesCS2B01G256000 chr7A 95.455 858 17 9 2822 3678 299568708 299567872 0.000000e+00 1349.0
30 TraesCS2B01G256000 chr7A 95.105 858 20 9 2822 3678 305709028 305708192 0.000000e+00 1332.0
31 TraesCS2B01G256000 chr7A 97.331 562 14 1 3759 4319 299567873 299567312 0.000000e+00 953.0
32 TraesCS2B01G256000 chr7A 96.619 562 18 1 3759 4319 296604976 296605537 0.000000e+00 931.0
33 TraesCS2B01G256000 chr7A 95.907 562 22 1 3759 4319 305708193 305707632 0.000000e+00 909.0
34 TraesCS2B01G256000 chr7A 96.552 116 4 0 2717 2832 192671856 192671971 4.410000e-45 193.0
35 TraesCS2B01G256000 chr7A 98.182 110 2 0 1068 1177 299568843 299568734 4.410000e-45 193.0
36 TraesCS2B01G256000 chr7A 95.726 117 5 0 2715 2831 15276535 15276651 5.700000e-44 189.0
37 TraesCS2B01G256000 chr7A 92.593 108 8 0 2716 2823 76935950 76935843 5.780000e-34 156.0
38 TraesCS2B01G256000 chr7A 82.474 97 16 1 2697 2793 181049380 181049285 2.770000e-12 84.2
39 TraesCS2B01G256000 chr3A 98.949 1522 15 1 1175 2696 41978138 41979658 0.000000e+00 2721.0
40 TraesCS2B01G256000 chr3A 90.796 565 38 4 3759 4319 71265909 71266463 0.000000e+00 743.0
41 TraesCS2B01G256000 chr3A 95.926 270 9 1 3409 3678 71265643 71265910 1.840000e-118 436.0
42 TraesCS2B01G256000 chr1A 98.883 1522 17 0 1175 2696 425241093 425242614 0.000000e+00 2717.0
43 TraesCS2B01G256000 chr1A 99.063 427 4 0 3 429 315270395 315269969 0.000000e+00 767.0
44 TraesCS2B01G256000 chr1A 92.500 120 9 0 2920 3039 292769431 292769550 5.740000e-39 172.0
45 TraesCS2B01G256000 chr3B 98.882 1521 17 0 1176 2696 458416698 458415178 0.000000e+00 2715.0
46 TraesCS2B01G256000 chr3B 81.490 443 29 23 662 1072 668821672 668821251 9.020000e-82 315.0
47 TraesCS2B01G256000 chr3B 93.684 95 5 1 3669 3762 132527291 132527385 1.620000e-29 141.0
48 TraesCS2B01G256000 chr7B 95.713 863 27 6 2822 3678 511462310 511461452 0.000000e+00 1380.0
49 TraesCS2B01G256000 chr7B 90.316 981 37 9 253 1177 511463314 511462336 0.000000e+00 1232.0
50 TraesCS2B01G256000 chr7B 95.552 562 23 2 3759 4319 511461453 511460893 0.000000e+00 898.0
51 TraesCS2B01G256000 chr7B 98.601 429 6 0 1 429 45648755 45648327 0.000000e+00 760.0
52 TraesCS2B01G256000 chr7B 94.262 122 4 3 2703 2824 547472489 547472371 2.650000e-42 183.0
53 TraesCS2B01G256000 chr7B 90.385 104 9 1 3668 3770 718690544 718690647 7.530000e-28 135.0
54 TraesCS2B01G256000 chr2A 92.567 861 34 15 2822 3676 715964409 715963573 0.000000e+00 1208.0
55 TraesCS2B01G256000 chr2A 99.068 429 4 0 1 429 648745497 648745069 0.000000e+00 771.0
56 TraesCS2B01G256000 chr2A 89.474 171 9 2 3759 3928 715963571 715963409 1.570000e-49 207.0
57 TraesCS2B01G256000 chr2D 93.985 665 32 6 3019 3678 577827666 577827005 0.000000e+00 1000.0
58 TraesCS2B01G256000 chr2D 82.353 561 60 22 626 1154 460873917 460874470 6.590000e-123 451.0
59 TraesCS2B01G256000 chr2D 84.211 304 40 4 3045 3344 578311161 578311460 5.460000e-74 289.0
60 TraesCS2B01G256000 chr2D 87.778 180 11 2 3757 3935 577827008 577826839 2.630000e-47 200.0
61 TraesCS2B01G256000 chr2D 92.969 128 9 0 2920 3047 607675860 607675733 2.050000e-43 187.0
62 TraesCS2B01G256000 chr2D 92.929 99 5 2 3671 3767 62036050 62036148 4.500000e-30 143.0
63 TraesCS2B01G256000 chr4B 98.601 429 6 0 1 429 167919175 167918747 0.000000e+00 760.0
64 TraesCS2B01G256000 chr4B 91.837 98 7 1 3672 3768 404977552 404977455 7.530000e-28 135.0
65 TraesCS2B01G256000 chr5B 98.182 110 2 0 2717 2826 558558696 558558587 4.410000e-45 193.0
66 TraesCS2B01G256000 chr5B 88.961 154 11 6 2694 2843 42689565 42689716 7.380000e-43 185.0
67 TraesCS2B01G256000 chr5B 89.362 94 10 0 2700 2793 611922836 611922743 7.590000e-23 119.0
68 TraesCS2B01G256000 chr5A 98.182 110 2 0 2717 2826 350570178 350570287 4.410000e-45 193.0
69 TraesCS2B01G256000 chr7D 93.701 127 7 1 2697 2823 568753492 568753367 5.700000e-44 189.0
70 TraesCS2B01G256000 chr4A 92.481 133 9 1 2706 2837 59307931 59307799 5.700000e-44 189.0
71 TraesCS2B01G256000 chr4A 95.327 107 5 0 2717 2823 1725513 1725407 2.070000e-38 171.0
72 TraesCS2B01G256000 chr3D 94.118 119 5 2 2921 3039 537915012 537914896 3.430000e-41 180.0
73 TraesCS2B01G256000 chr3D 78.261 138 19 3 2697 2824 78095853 78095717 1.290000e-10 78.7
74 TraesCS2B01G256000 chr6B 91.089 101 8 1 3669 3768 29898066 29898166 7.530000e-28 135.0
75 TraesCS2B01G256000 chr6B 91.837 98 7 1 3672 3768 90349995 90349898 7.530000e-28 135.0
76 TraesCS2B01G256000 chr5D 81.443 97 15 3 2698 2793 376665478 376665384 4.630000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G256000 chr2B 296066086 296070404 4318 True 7976.000000 7976 100.000000 1 4319 1 chr2B.!!$R4 4318
1 TraesCS2B01G256000 chr2B 10584545 10586063 1518 True 2730.000000 2730 99.080000 1176 2696 1 chr2B.!!$R1 1520
2 TraesCS2B01G256000 chr2B 695409668 695410366 698 True 341.666667 664 94.003667 2822 3928 3 chr2B.!!$R5 1106
3 TraesCS2B01G256000 chr2B 542673063 542674006 943 False 338.500000 407 88.501000 768 4262 2 chr2B.!!$F2 3494
4 TraesCS2B01G256000 chr2B 695436179 695437053 874 True 333.000000 499 92.778250 2822 3928 4 chr2B.!!$R6 1106
5 TraesCS2B01G256000 chr6A 605334694 605336214 1520 True 2745.000000 2745 99.212000 1174 2696 1 chr6A.!!$R1 1522
6 TraesCS2B01G256000 chr6A 58305375 58306841 1466 False 759.866667 1620 95.920667 180 4319 3 chr6A.!!$F1 4139
7 TraesCS2B01G256000 chr1B 632146236 632147758 1522 False 2736.000000 2736 99.081000 1174 2696 1 chr1B.!!$F3 1522
8 TraesCS2B01G256000 chrUn 71105081 71106600 1519 False 2732.000000 2732 99.080000 1175 2696 1 chrUn.!!$F1 1521
9 TraesCS2B01G256000 chrUn 281486711 281488230 1519 True 2732.000000 2732 99.080000 1175 2696 1 chrUn.!!$R1 1521
10 TraesCS2B01G256000 chr7A 549107518 549109038 1520 False 2723.000000 2723 98.949000 1174 2696 1 chr7A.!!$F3 1522
11 TraesCS2B01G256000 chr7A 299574209 299575303 1094 True 1740.000000 1740 95.708000 1 1072 1 chr7A.!!$R3 1071
12 TraesCS2B01G256000 chr7A 296602917 296605537 2620 False 1400.000000 1917 96.007667 1 4319 3 chr7A.!!$F4 4318
13 TraesCS2B01G256000 chr7A 305707632 305710255 2623 True 1375.666667 1886 95.451000 1 4319 3 chr7A.!!$R5 4318
14 TraesCS2B01G256000 chr7A 299567312 299568843 1531 True 831.666667 1349 96.989333 1068 4319 3 chr7A.!!$R4 3251
15 TraesCS2B01G256000 chr3A 41978138 41979658 1520 False 2721.000000 2721 98.949000 1175 2696 1 chr3A.!!$F1 1521
16 TraesCS2B01G256000 chr3A 71265643 71266463 820 False 589.500000 743 93.361000 3409 4319 2 chr3A.!!$F2 910
17 TraesCS2B01G256000 chr1A 425241093 425242614 1521 False 2717.000000 2717 98.883000 1175 2696 1 chr1A.!!$F2 1521
18 TraesCS2B01G256000 chr3B 458415178 458416698 1520 True 2715.000000 2715 98.882000 1176 2696 1 chr3B.!!$R1 1520
19 TraesCS2B01G256000 chr7B 511460893 511463314 2421 True 1170.000000 1380 93.860333 253 4319 3 chr7B.!!$R3 4066
20 TraesCS2B01G256000 chr2A 715963409 715964409 1000 True 707.500000 1208 91.020500 2822 3928 2 chr2A.!!$R2 1106
21 TraesCS2B01G256000 chr2D 577826839 577827666 827 True 600.000000 1000 90.881500 3019 3935 2 chr2D.!!$R2 916
22 TraesCS2B01G256000 chr2D 460873917 460874470 553 False 451.000000 451 82.353000 626 1154 1 chr2D.!!$F2 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.179145 ATCGTCGTCCGCTTAGGTTG 60.179 55.000 0.00 0.0 41.99 3.77 F
642 670 0.316442 GCGATTGATGGATGTGCGTG 60.316 55.000 0.00 0.0 0.00 5.34 F
1171 1236 2.192861 TGTGGCCCTGTTGCTTTCG 61.193 57.895 0.00 0.0 0.00 3.46 F
2017 2084 0.107312 GCATCCAGACAGTCAGCCAT 60.107 55.000 2.66 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1304 1371 0.106769 TTGTTGAGCTGTGCCCTCAA 60.107 50.0 0.00 0.09 44.54 3.02 R
2004 2071 1.283347 ATGGACATGGCTGACTGTCT 58.717 50.0 9.51 0.00 41.21 3.41 R
2815 2882 0.043334 ACCACTGCCATCTACTCCCT 59.957 55.0 0.00 0.00 0.00 4.20 R
3746 3853 0.033306 AAGACCTACTCCCTCCGTCC 60.033 60.0 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
181 182 8.267894 AGATTCGATTTCTATTTCCTTTCCTCA 58.732 33.333 0.00 0.00 0.00 3.86
200 201 0.179145 ATCGTCGTCCGCTTAGGTTG 60.179 55.000 0.00 0.00 41.99 3.77
270 271 1.301716 GGTGCCGAAGAAGAGTGCA 60.302 57.895 0.00 0.00 0.00 4.57
272 273 1.664649 TGCCGAAGAAGAGTGCACG 60.665 57.895 12.01 0.00 0.00 5.34
397 399 7.436673 CGTTTTGACTGATCAATTGGGTTTAAA 59.563 33.333 5.42 4.21 44.36 1.52
642 670 0.316442 GCGATTGATGGATGTGCGTG 60.316 55.000 0.00 0.00 0.00 5.34
1040 1103 5.220710 ACAGATGGTTCTACTGGATATGC 57.779 43.478 0.00 0.00 36.17 3.14
1171 1236 2.192861 TGTGGCCCTGTTGCTTTCG 61.193 57.895 0.00 0.00 0.00 3.46
1245 1310 2.692557 CCAACATCCACAAGGTTCACAA 59.307 45.455 0.00 0.00 35.89 3.33
1304 1371 3.508845 ACAAGCATCAAGGGTTAGTGT 57.491 42.857 0.00 0.00 0.00 3.55
1634 1701 4.767409 AGCCATCTAATATGTCTGTAGCGA 59.233 41.667 0.00 0.00 0.00 4.93
1688 1755 4.019141 TCGGGGAAGTTGTTATTACACCAT 60.019 41.667 0.00 0.00 32.98 3.55
2007 2074 0.108207 CCAGGAGATGGCATCCAGAC 59.892 60.000 23.33 11.35 43.83 3.51
2017 2084 0.107312 GCATCCAGACAGTCAGCCAT 60.107 55.000 2.66 0.00 0.00 4.40
2705 2772 3.003897 GCTCAACTCGGTGATAGTAGAGG 59.996 52.174 0.00 0.00 35.22 3.69
2716 2783 6.350277 CGGTGATAGTAGAGGTCAAAAGTTCT 60.350 42.308 0.00 0.00 0.00 3.01
2717 2784 7.148120 CGGTGATAGTAGAGGTCAAAAGTTCTA 60.148 40.741 0.00 0.00 0.00 2.10
2718 2785 7.975058 GGTGATAGTAGAGGTCAAAAGTTCTAC 59.025 40.741 3.04 3.04 41.32 2.59
2720 2787 8.958506 TGATAGTAGAGGTCAAAAGTTCTACTC 58.041 37.037 14.29 5.08 45.55 2.59
2721 2788 6.593268 AGTAGAGGTCAAAAGTTCTACTCC 57.407 41.667 7.10 0.00 45.55 3.85
2722 2789 4.893829 AGAGGTCAAAAGTTCTACTCCC 57.106 45.455 0.00 0.00 0.00 4.30
2723 2790 4.494591 AGAGGTCAAAAGTTCTACTCCCT 58.505 43.478 0.00 0.00 0.00 4.20
2724 2791 4.528987 AGAGGTCAAAAGTTCTACTCCCTC 59.471 45.833 0.00 0.00 36.95 4.30
2725 2792 3.583526 AGGTCAAAAGTTCTACTCCCTCC 59.416 47.826 0.00 0.00 0.00 4.30
2726 2793 3.586892 GTCAAAAGTTCTACTCCCTCCG 58.413 50.000 0.00 0.00 0.00 4.63
2727 2794 3.006644 GTCAAAAGTTCTACTCCCTCCGT 59.993 47.826 0.00 0.00 0.00 4.69
2728 2795 3.644738 TCAAAAGTTCTACTCCCTCCGTT 59.355 43.478 0.00 0.00 0.00 4.44
2729 2796 3.957591 AAAGTTCTACTCCCTCCGTTC 57.042 47.619 0.00 0.00 0.00 3.95
2730 2797 1.461559 AGTTCTACTCCCTCCGTTCG 58.538 55.000 0.00 0.00 0.00 3.95
2731 2798 0.455005 GTTCTACTCCCTCCGTTCGG 59.545 60.000 4.74 4.74 0.00 4.30
2732 2799 0.329261 TTCTACTCCCTCCGTTCGGA 59.671 55.000 13.34 13.34 0.00 4.55
2733 2800 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
2734 2801 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
2735 2802 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
2736 2803 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2737 2804 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2738 2805 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2739 2806 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2740 2807 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2741 2808 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2742 2809 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2743 2810 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
2744 2811 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
2745 2812 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2746 2813 2.156117 CGTTCGGAATTACTTGTCGCAA 59.844 45.455 0.00 0.00 0.00 4.85
2747 2814 3.363182 CGTTCGGAATTACTTGTCGCAAA 60.363 43.478 0.00 0.00 0.00 3.68
2748 2815 4.529446 GTTCGGAATTACTTGTCGCAAAA 58.471 39.130 0.00 0.00 0.00 2.44
2749 2816 4.815040 TCGGAATTACTTGTCGCAAAAA 57.185 36.364 0.00 0.00 0.00 1.94
2750 2817 5.365403 TCGGAATTACTTGTCGCAAAAAT 57.635 34.783 0.00 0.00 0.00 1.82
2751 2818 5.150683 TCGGAATTACTTGTCGCAAAAATG 58.849 37.500 0.00 0.00 0.00 2.32
2752 2819 4.323336 CGGAATTACTTGTCGCAAAAATGG 59.677 41.667 0.00 0.00 0.00 3.16
2753 2820 5.465935 GGAATTACTTGTCGCAAAAATGGA 58.534 37.500 0.00 0.00 0.00 3.41
2754 2821 6.099341 GGAATTACTTGTCGCAAAAATGGAT 58.901 36.000 0.00 0.00 0.00 3.41
2755 2822 6.034898 GGAATTACTTGTCGCAAAAATGGATG 59.965 38.462 0.00 0.00 0.00 3.51
2756 2823 5.446143 TTACTTGTCGCAAAAATGGATGT 57.554 34.783 0.00 0.00 0.00 3.06
2757 2824 6.561737 TTACTTGTCGCAAAAATGGATGTA 57.438 33.333 0.00 0.00 0.00 2.29
2758 2825 5.643379 ACTTGTCGCAAAAATGGATGTAT 57.357 34.783 0.00 0.00 0.00 2.29
2759 2826 5.640732 ACTTGTCGCAAAAATGGATGTATC 58.359 37.500 0.00 0.00 0.00 2.24
2760 2827 5.415701 ACTTGTCGCAAAAATGGATGTATCT 59.584 36.000 0.00 0.00 0.00 1.98
2761 2828 6.597672 ACTTGTCGCAAAAATGGATGTATCTA 59.402 34.615 0.00 0.00 0.00 1.98
2762 2829 6.603237 TGTCGCAAAAATGGATGTATCTAG 57.397 37.500 0.00 0.00 0.00 2.43
2763 2830 6.345298 TGTCGCAAAAATGGATGTATCTAGA 58.655 36.000 0.00 0.00 0.00 2.43
2764 2831 6.257849 TGTCGCAAAAATGGATGTATCTAGAC 59.742 38.462 0.00 0.00 0.00 2.59
2765 2832 5.462068 TCGCAAAAATGGATGTATCTAGACG 59.538 40.000 0.00 0.00 0.00 4.18
2766 2833 5.234329 CGCAAAAATGGATGTATCTAGACGT 59.766 40.000 0.00 0.00 0.00 4.34
2767 2834 6.419710 CGCAAAAATGGATGTATCTAGACGTA 59.580 38.462 0.00 0.00 0.00 3.57
2768 2835 7.116376 CGCAAAAATGGATGTATCTAGACGTAT 59.884 37.037 0.00 0.00 0.00 3.06
2769 2836 8.774586 GCAAAAATGGATGTATCTAGACGTATT 58.225 33.333 0.00 0.00 0.00 1.89
2798 2865 9.522804 AGTTCTAGATACATTCATTTTCGAGAC 57.477 33.333 0.00 0.00 0.00 3.36
2799 2866 9.302345 GTTCTAGATACATTCATTTTCGAGACA 57.698 33.333 0.00 0.00 0.00 3.41
2800 2867 9.869757 TTCTAGATACATTCATTTTCGAGACAA 57.130 29.630 0.00 0.00 0.00 3.18
2801 2868 9.521503 TCTAGATACATTCATTTTCGAGACAAG 57.478 33.333 0.00 0.00 0.00 3.16
2802 2869 9.307121 CTAGATACATTCATTTTCGAGACAAGT 57.693 33.333 0.00 0.00 0.00 3.16
2804 2871 9.653287 AGATACATTCATTTTCGAGACAAGTAA 57.347 29.630 0.00 0.00 0.00 2.24
2808 2875 8.237267 ACATTCATTTTCGAGACAAGTAATTCC 58.763 33.333 0.00 0.00 0.00 3.01
2809 2876 6.403333 TCATTTTCGAGACAAGTAATTCCG 57.597 37.500 0.00 0.00 0.00 4.30
2810 2877 6.160684 TCATTTTCGAGACAAGTAATTCCGA 58.839 36.000 0.00 0.00 0.00 4.55
2811 2878 6.647481 TCATTTTCGAGACAAGTAATTCCGAA 59.353 34.615 0.00 0.00 33.57 4.30
2812 2879 5.834239 TTTCGAGACAAGTAATTCCGAAC 57.166 39.130 0.00 0.00 34.86 3.95
2813 2880 3.495193 TCGAGACAAGTAATTCCGAACG 58.505 45.455 0.00 0.00 0.00 3.95
2814 2881 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
2815 2882 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
2816 2883 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
2817 2884 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2818 2885 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2819 2886 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2820 2887 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2887 2954 9.774742 CGCTTCTGTAAAAAGCTAGATAAAATT 57.225 29.630 0.00 0.00 45.50 1.82
2928 2995 0.698238 TGCCTTGCACATACTCCCTT 59.302 50.000 0.00 0.00 31.71 3.95
3045 3112 3.459969 GGGATGGAGGGAGTATTTGTCTT 59.540 47.826 0.00 0.00 0.00 3.01
3046 3113 4.658901 GGGATGGAGGGAGTATTTGTCTTA 59.341 45.833 0.00 0.00 0.00 2.10
3047 3114 5.454897 GGGATGGAGGGAGTATTTGTCTTAC 60.455 48.000 0.00 0.00 0.00 2.34
3048 3115 5.130477 GGATGGAGGGAGTATTTGTCTTACA 59.870 44.000 0.00 0.00 0.00 2.41
3401 3505 4.008330 CAGGTGCAGATTCTGAATTCTGT 58.992 43.478 17.87 7.61 32.44 3.41
3636 3741 0.322008 AGGCAGCTGGAGTTAGCAAC 60.322 55.000 17.12 0.00 46.07 4.17
3691 3798 1.961133 AAAATACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
3692 3799 2.191981 AAATACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
3693 3800 3.339713 AAATACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
3694 3801 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
3695 3802 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
3696 3803 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3697 3804 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3698 3805 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3699 3806 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3700 3807 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3701 3808 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3702 3809 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
3703 3810 3.386726 CCTCCGTCCCATAATGTAAGACA 59.613 47.826 0.00 0.00 0.00 3.41
3704 3811 4.040461 CCTCCGTCCCATAATGTAAGACAT 59.960 45.833 0.00 0.00 41.31 3.06
3706 3813 5.996644 TCCGTCCCATAATGTAAGACATTT 58.003 37.500 9.92 0.00 45.80 2.32
3707 3814 6.419791 TCCGTCCCATAATGTAAGACATTTT 58.580 36.000 9.92 0.33 45.80 1.82
3708 3815 6.887545 TCCGTCCCATAATGTAAGACATTTTT 59.112 34.615 9.92 0.00 45.80 1.94
3755 3862 3.990369 TCCTATATTATGGGACGGAGGG 58.010 50.000 4.74 0.00 34.71 4.30
3756 3863 3.599240 TCCTATATTATGGGACGGAGGGA 59.401 47.826 4.74 0.00 34.71 4.20
3757 3864 3.961408 CCTATATTATGGGACGGAGGGAG 59.039 52.174 0.00 0.00 31.57 4.30
3758 3865 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
4008 4171 7.591006 AACAGAAGCTTGCAATTCAATTATG 57.409 32.000 2.10 8.30 33.57 1.90
4053 4241 3.689649 GGTCAGATAAGTTGTTCCGCAAT 59.310 43.478 0.00 0.00 39.55 3.56
4118 4306 6.105397 ACTTGTTGATGAAGCCAATGATTT 57.895 33.333 0.00 0.00 0.00 2.17
4146 4334 5.962641 TGATCATAGTGATAGGGCATCAGAT 59.037 40.000 0.00 0.00 44.42 2.90
4251 4439 5.710099 TGGTGAATATTTTGGACCAGAAGTC 59.290 40.000 3.57 2.12 45.51 3.01
4274 4463 1.798813 GGATGTTTCACGCGAAGAAGT 59.201 47.619 15.93 6.74 31.28 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 201 0.325765 ACCTCTCTGGCTCCCCTTAC 60.326 60.000 0.00 0.00 40.22 2.34
270 271 2.001269 CCCCTTTCCATCCTCCCGT 61.001 63.158 0.00 0.00 0.00 5.28
272 273 2.000825 GAGCCCCTTTCCATCCTCCC 62.001 65.000 0.00 0.00 0.00 4.30
589 613 1.116536 TGGTAACCAGTGACGAGCCA 61.117 55.000 0.00 0.00 0.00 4.75
818 876 1.713647 TGGCCCATTCAGGTTTAGGAA 59.286 47.619 0.00 0.00 34.66 3.36
1040 1103 7.807977 ATGCTTCTTGTTATATACCCAACAG 57.192 36.000 0.00 0.00 36.13 3.16
1171 1236 4.254745 CGTGAGCCTTTTTCGGTAATAC 57.745 45.455 0.00 0.00 0.00 1.89
1245 1310 1.271652 TGTGTGTGTGAACCTTGGTGT 60.272 47.619 0.00 0.00 0.00 4.16
1304 1371 0.106769 TTGTTGAGCTGTGCCCTCAA 60.107 50.000 0.00 0.09 44.54 3.02
1634 1701 2.514522 AAATCCAGGCCTCCCCTCCT 62.515 60.000 0.00 0.00 44.09 3.69
1688 1755 1.526455 CGAAACGGTTGGGGGACAA 60.526 57.895 0.00 0.00 36.54 3.18
2004 2071 1.283347 ATGGACATGGCTGACTGTCT 58.717 50.000 9.51 0.00 41.21 3.41
2007 2074 1.813092 GCCTATGGACATGGCTGACTG 60.813 57.143 0.00 0.00 43.05 3.51
2017 2084 1.302949 GCCCTGTTGCCTATGGACA 59.697 57.895 0.00 0.00 0.00 4.02
2705 2772 3.006644 ACGGAGGGAGTAGAACTTTTGAC 59.993 47.826 0.00 0.00 0.00 3.18
2716 2783 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2717 2784 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2718 2785 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2719 2786 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2720 2787 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2721 2788 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2722 2789 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
2723 2790 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
2724 2791 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
2725 2792 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
2726 2793 3.799137 TTGCGACAAGTAATTCCGAAC 57.201 42.857 0.00 0.00 0.00 3.95
2727 2794 4.815040 TTTTGCGACAAGTAATTCCGAA 57.185 36.364 0.00 0.00 0.00 4.30
2728 2795 4.815040 TTTTTGCGACAAGTAATTCCGA 57.185 36.364 0.00 0.00 0.00 4.55
2729 2796 4.323336 CCATTTTTGCGACAAGTAATTCCG 59.677 41.667 0.00 0.00 0.00 4.30
2730 2797 5.465935 TCCATTTTTGCGACAAGTAATTCC 58.534 37.500 0.00 0.00 0.00 3.01
2731 2798 6.586082 ACATCCATTTTTGCGACAAGTAATTC 59.414 34.615 0.00 0.00 0.00 2.17
2732 2799 6.454795 ACATCCATTTTTGCGACAAGTAATT 58.545 32.000 0.00 0.00 0.00 1.40
2733 2800 6.024552 ACATCCATTTTTGCGACAAGTAAT 57.975 33.333 0.00 0.00 0.00 1.89
2734 2801 5.446143 ACATCCATTTTTGCGACAAGTAA 57.554 34.783 0.00 0.00 0.00 2.24
2735 2802 6.597672 AGATACATCCATTTTTGCGACAAGTA 59.402 34.615 0.00 0.00 0.00 2.24
2736 2803 5.415701 AGATACATCCATTTTTGCGACAAGT 59.584 36.000 0.00 0.00 0.00 3.16
2737 2804 5.883661 AGATACATCCATTTTTGCGACAAG 58.116 37.500 0.00 0.00 0.00 3.16
2738 2805 5.895636 AGATACATCCATTTTTGCGACAA 57.104 34.783 0.00 0.00 0.00 3.18
2739 2806 6.257849 GTCTAGATACATCCATTTTTGCGACA 59.742 38.462 0.00 0.00 0.00 4.35
2740 2807 6.562270 CGTCTAGATACATCCATTTTTGCGAC 60.562 42.308 0.00 0.00 0.00 5.19
2741 2808 5.462068 CGTCTAGATACATCCATTTTTGCGA 59.538 40.000 0.00 0.00 0.00 5.10
2742 2809 5.234329 ACGTCTAGATACATCCATTTTTGCG 59.766 40.000 0.00 0.00 0.00 4.85
2743 2810 6.604735 ACGTCTAGATACATCCATTTTTGC 57.395 37.500 0.00 0.00 0.00 3.68
2772 2839 9.522804 GTCTCGAAAATGAATGTATCTAGAACT 57.477 33.333 0.00 0.00 0.00 3.01
2773 2840 9.302345 TGTCTCGAAAATGAATGTATCTAGAAC 57.698 33.333 0.00 0.00 0.00 3.01
2774 2841 9.869757 TTGTCTCGAAAATGAATGTATCTAGAA 57.130 29.630 0.00 0.00 0.00 2.10
2775 2842 9.521503 CTTGTCTCGAAAATGAATGTATCTAGA 57.478 33.333 0.00 0.00 0.00 2.43
2776 2843 9.307121 ACTTGTCTCGAAAATGAATGTATCTAG 57.693 33.333 0.00 0.00 0.00 2.43
2778 2845 9.653287 TTACTTGTCTCGAAAATGAATGTATCT 57.347 29.630 0.00 0.00 0.00 1.98
2782 2849 8.237267 GGAATTACTTGTCTCGAAAATGAATGT 58.763 33.333 0.00 0.00 0.00 2.71
2783 2850 7.426456 CGGAATTACTTGTCTCGAAAATGAATG 59.574 37.037 0.00 0.00 0.00 2.67
2784 2851 7.333423 TCGGAATTACTTGTCTCGAAAATGAAT 59.667 33.333 0.00 0.00 0.00 2.57
2785 2852 6.647481 TCGGAATTACTTGTCTCGAAAATGAA 59.353 34.615 0.00 0.00 0.00 2.57
2786 2853 6.160684 TCGGAATTACTTGTCTCGAAAATGA 58.839 36.000 0.00 0.00 0.00 2.57
2787 2854 6.403333 TCGGAATTACTTGTCTCGAAAATG 57.597 37.500 0.00 0.00 0.00 2.32
2788 2855 6.400727 CGTTCGGAATTACTTGTCTCGAAAAT 60.401 38.462 0.00 0.00 37.00 1.82
2789 2856 5.107760 CGTTCGGAATTACTTGTCTCGAAAA 60.108 40.000 0.00 0.00 37.00 2.29
2790 2857 4.383649 CGTTCGGAATTACTTGTCTCGAAA 59.616 41.667 0.00 0.00 37.00 3.46
2791 2858 3.916172 CGTTCGGAATTACTTGTCTCGAA 59.084 43.478 0.00 0.00 33.66 3.71
2792 2859 3.495193 CGTTCGGAATTACTTGTCTCGA 58.505 45.455 0.00 0.00 0.00 4.04
2793 2860 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
2794 2861 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
2795 2862 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
2796 2863 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2797 2864 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2798 2865 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2799 2866 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2800 2867 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2801 2868 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2802 2869 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2803 2870 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
2804 2871 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
2805 2872 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
2806 2873 0.549950 ATCTACTCCCTCCGTTCGGA 59.450 55.000 13.34 13.34 0.00 4.55
2807 2874 0.669077 CATCTACTCCCTCCGTTCGG 59.331 60.000 4.74 4.74 0.00 4.30
2808 2875 0.669077 CCATCTACTCCCTCCGTTCG 59.331 60.000 0.00 0.00 0.00 3.95
2809 2876 0.389757 GCCATCTACTCCCTCCGTTC 59.610 60.000 0.00 0.00 0.00 3.95
2810 2877 0.325296 TGCCATCTACTCCCTCCGTT 60.325 55.000 0.00 0.00 0.00 4.44
2811 2878 0.757188 CTGCCATCTACTCCCTCCGT 60.757 60.000 0.00 0.00 0.00 4.69
2812 2879 0.757188 ACTGCCATCTACTCCCTCCG 60.757 60.000 0.00 0.00 0.00 4.63
2813 2880 0.755686 CACTGCCATCTACTCCCTCC 59.244 60.000 0.00 0.00 0.00 4.30
2814 2881 0.755686 CCACTGCCATCTACTCCCTC 59.244 60.000 0.00 0.00 0.00 4.30
2815 2882 0.043334 ACCACTGCCATCTACTCCCT 59.957 55.000 0.00 0.00 0.00 4.20
2816 2883 1.789523 TACCACTGCCATCTACTCCC 58.210 55.000 0.00 0.00 0.00 4.30
2817 2884 4.772624 TGATATACCACTGCCATCTACTCC 59.227 45.833 0.00 0.00 0.00 3.85
2818 2885 5.478679 ACTGATATACCACTGCCATCTACTC 59.521 44.000 0.00 0.00 0.00 2.59
2819 2886 5.398236 ACTGATATACCACTGCCATCTACT 58.602 41.667 0.00 0.00 0.00 2.57
2820 2887 5.730296 ACTGATATACCACTGCCATCTAC 57.270 43.478 0.00 0.00 0.00 2.59
2887 2954 9.760926 AGGCAATAGATTCTAGTGATACAGATA 57.239 33.333 21.83 0.00 0.00 1.98
2928 2995 3.389925 ACGACAAGTAATTCCGGACAA 57.610 42.857 1.83 0.00 0.00 3.18
2982 3049 9.736414 AGAAATGGATAGAAATGGATGTATCTG 57.264 33.333 0.00 0.00 0.00 2.90
3046 3113 9.361315 GTGTAAAAAGGAATACAAGTGTTTTGT 57.639 29.630 0.00 0.00 34.08 2.83
3047 3114 9.581099 AGTGTAAAAAGGAATACAAGTGTTTTG 57.419 29.630 0.00 0.00 34.08 2.44
3048 3115 9.581099 CAGTGTAAAAAGGAATACAAGTGTTTT 57.419 29.630 0.00 0.00 34.08 2.43
3401 3505 6.661377 AGCTCTCTGTTTCTATCTTCTGTGTA 59.339 38.462 0.00 0.00 0.00 2.90
3412 3516 1.276421 GCCACCAGCTCTCTGTTTCTA 59.724 52.381 0.00 0.00 38.66 2.10
3415 3519 0.183492 TTGCCACCAGCTCTCTGTTT 59.817 50.000 0.00 0.00 44.23 2.83
3448 3553 2.609916 GCGAAGAAAGCTCTCCATAACC 59.390 50.000 0.00 0.00 0.00 2.85
3636 3741 1.066143 AGCCACCCTTGACTAATCACG 60.066 52.381 0.00 0.00 33.38 4.35
3677 3784 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
3678 3785 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3679 3786 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3680 3787 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3681 3788 3.386726 TGTCTTACATTATGGGACGGAGG 59.613 47.826 0.00 0.00 0.00 4.30
3682 3789 4.665833 TGTCTTACATTATGGGACGGAG 57.334 45.455 0.00 0.00 0.00 4.63
3683 3790 5.623956 AATGTCTTACATTATGGGACGGA 57.376 39.130 3.51 0.00 46.11 4.69
3728 3835 7.383156 TCCGTCCCATAATATAGGACTTTTT 57.617 36.000 14.27 0.00 46.53 1.94
3729 3836 6.013639 CCTCCGTCCCATAATATAGGACTTTT 60.014 42.308 14.27 0.00 46.53 2.27
3730 3837 5.484290 CCTCCGTCCCATAATATAGGACTTT 59.516 44.000 14.27 0.00 46.53 2.66
3731 3838 5.024118 CCTCCGTCCCATAATATAGGACTT 58.976 45.833 14.27 0.00 46.53 3.01
3732 3839 4.572223 CCCTCCGTCCCATAATATAGGACT 60.572 50.000 14.27 0.00 46.53 3.85
3733 3840 3.705072 CCCTCCGTCCCATAATATAGGAC 59.295 52.174 7.65 7.65 45.49 3.85
3734 3841 3.599240 TCCCTCCGTCCCATAATATAGGA 59.401 47.826 0.00 0.00 0.00 2.94
3735 3842 3.961408 CTCCCTCCGTCCCATAATATAGG 59.039 52.174 0.00 0.00 0.00 2.57
3736 3843 4.611367 ACTCCCTCCGTCCCATAATATAG 58.389 47.826 0.00 0.00 0.00 1.31
3737 3844 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3738 3845 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3739 3846 3.245514 CCTACTCCCTCCGTCCCATAATA 60.246 52.174 0.00 0.00 0.00 0.98
3740 3847 2.492940 CCTACTCCCTCCGTCCCATAAT 60.493 54.545 0.00 0.00 0.00 1.28
3741 3848 1.133262 CCTACTCCCTCCGTCCCATAA 60.133 57.143 0.00 0.00 0.00 1.90
3742 3849 0.481567 CCTACTCCCTCCGTCCCATA 59.518 60.000 0.00 0.00 0.00 2.74
3743 3850 1.233369 CCTACTCCCTCCGTCCCAT 59.767 63.158 0.00 0.00 0.00 4.00
3744 3851 2.220786 GACCTACTCCCTCCGTCCCA 62.221 65.000 0.00 0.00 0.00 4.37
3745 3852 1.455402 GACCTACTCCCTCCGTCCC 60.455 68.421 0.00 0.00 0.00 4.46
3746 3853 0.033306 AAGACCTACTCCCTCCGTCC 60.033 60.000 0.00 0.00 0.00 4.79
3747 3854 2.725221 TAAGACCTACTCCCTCCGTC 57.275 55.000 0.00 0.00 0.00 4.79
3748 3855 3.463048 TTTAAGACCTACTCCCTCCGT 57.537 47.619 0.00 0.00 0.00 4.69
3749 3856 3.768215 AGTTTTAAGACCTACTCCCTCCG 59.232 47.826 0.00 0.00 0.00 4.63
3750 3857 5.247792 TGAAGTTTTAAGACCTACTCCCTCC 59.752 44.000 0.00 0.00 0.00 4.30
3751 3858 6.356186 TGAAGTTTTAAGACCTACTCCCTC 57.644 41.667 0.00 0.00 0.00 4.30
3752 3859 6.954352 ATGAAGTTTTAAGACCTACTCCCT 57.046 37.500 0.00 0.00 0.00 4.20
3753 3860 9.682465 AAATATGAAGTTTTAAGACCTACTCCC 57.318 33.333 0.00 0.00 0.00 4.30
3930 4091 9.341078 TGAAAGAGCTCATGTATTTATGCATAA 57.659 29.630 17.77 15.21 31.75 1.90
4008 4171 2.021068 TAGACTCGGGCAGATGCAGC 62.021 60.000 7.19 0.00 44.36 5.25
4118 4306 3.973305 TGCCCTATCACTATGATCAACCA 59.027 43.478 0.00 0.00 38.26 3.67
4146 4334 6.069905 TGTCTGGGGTTAAATCTAGCATTACA 60.070 38.462 0.00 0.00 0.00 2.41
4251 4439 1.798223 TCTTCGCGTGAAACATCCTTG 59.202 47.619 13.17 0.00 35.74 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.