Multiple sequence alignment - TraesCS2B01G254600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G254600 chr2B 100.000 2710 0 0 1 2710 283289212 283291921 0.000000e+00 5005.0
1 TraesCS2B01G254600 chr2B 88.382 680 34 13 1796 2439 757000399 757001069 0.000000e+00 776.0
2 TraesCS2B01G254600 chr2B 88.729 417 16 7 1971 2371 576580061 576579660 5.250000e-132 481.0
3 TraesCS2B01G254600 chr2B 98.141 269 5 0 2442 2710 109133285 109133553 1.140000e-128 470.0
4 TraesCS2B01G254600 chr2B 85.649 439 41 10 496 912 169499724 169500162 2.480000e-120 442.0
5 TraesCS2B01G254600 chr2B 95.635 252 8 1 1727 1975 576582204 576581953 4.200000e-108 401.0
6 TraesCS2B01G254600 chr2B 89.535 86 6 3 1620 1703 169500155 169500239 3.690000e-19 106.0
7 TraesCS2B01G254600 chr4B 95.361 1552 65 5 178 1728 195447327 195448872 0.000000e+00 2460.0
8 TraesCS2B01G254600 chr5B 90.191 734 35 11 1726 2429 652480871 652481597 0.000000e+00 922.0
9 TraesCS2B01G254600 chr5B 89.775 489 16 5 1729 2190 502441245 502440764 1.800000e-166 595.0
10 TraesCS2B01G254600 chr7B 89.344 732 41 10 1728 2429 89659638 89658914 0.000000e+00 885.0
11 TraesCS2B01G254600 chr7D 85.014 734 73 17 913 1618 521759218 521759942 0.000000e+00 712.0
12 TraesCS2B01G254600 chrUn 95.977 348 6 3 2095 2442 479123999 479123660 2.360000e-155 558.0
13 TraesCS2B01G254600 chr1B 95.977 348 6 3 2095 2442 7149873 7150212 2.360000e-155 558.0
14 TraesCS2B01G254600 chr1B 93.130 393 8 5 1726 2099 7187829 7188221 2.360000e-155 558.0
15 TraesCS2B01G254600 chr1B 95.977 348 6 3 2095 2442 7189866 7190205 2.360000e-155 558.0
16 TraesCS2B01G254600 chr1B 92.875 393 9 5 1726 2099 7147829 7148221 1.100000e-153 553.0
17 TraesCS2B01G254600 chr1B 95.131 267 13 0 2444 2710 436288920 436288654 3.230000e-114 422.0
18 TraesCS2B01G254600 chr1B 97.826 230 5 0 2481 2710 598676014 598675785 5.440000e-107 398.0
19 TraesCS2B01G254600 chr1B 96.992 133 4 0 2435 2567 598676147 598676015 9.760000e-55 224.0
20 TraesCS2B01G254600 chr7A 89.357 451 34 8 908 1351 19173296 19173739 3.050000e-154 555.0
21 TraesCS2B01G254600 chr7A 92.784 194 12 2 1401 1594 19173838 19174029 2.050000e-71 279.0
22 TraesCS2B01G254600 chr3B 80.800 750 65 36 1726 2404 104698021 104697280 5.170000e-142 514.0
23 TraesCS2B01G254600 chr3B 83.969 262 26 6 1729 1975 104505112 104505372 1.250000e-58 237.0
24 TraesCS2B01G254600 chr3B 87.368 95 4 4 4 98 819317677 819317591 4.770000e-18 102.0
25 TraesCS2B01G254600 chr6B 97.786 271 6 0 2440 2710 422994191 422994461 4.090000e-128 468.0
26 TraesCS2B01G254600 chr1D 92.053 302 21 1 2131 2429 283696066 283695765 3.230000e-114 422.0
27 TraesCS2B01G254600 chr1D 86.667 360 25 6 1729 2065 283696467 283696108 7.080000e-101 377.0
28 TraesCS2B01G254600 chr2D 92.500 280 21 0 2149 2428 644482003 644481724 4.200000e-108 401.0
29 TraesCS2B01G254600 chr5A 83.270 263 27 8 1726 1973 283279959 283279699 2.710000e-55 226.0
30 TraesCS2B01G254600 chr5A 90.000 50 5 0 2481 2530 547792061 547792012 6.260000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G254600 chr2B 283289212 283291921 2709 False 5005.0 5005 100.0000 1 2710 1 chr2B.!!$F2 2709
1 TraesCS2B01G254600 chr2B 757000399 757001069 670 False 776.0 776 88.3820 1796 2439 1 chr2B.!!$F3 643
2 TraesCS2B01G254600 chr2B 576579660 576582204 2544 True 441.0 481 92.1820 1727 2371 2 chr2B.!!$R1 644
3 TraesCS2B01G254600 chr2B 169499724 169500239 515 False 274.0 442 87.5920 496 1703 2 chr2B.!!$F4 1207
4 TraesCS2B01G254600 chr4B 195447327 195448872 1545 False 2460.0 2460 95.3610 178 1728 1 chr4B.!!$F1 1550
5 TraesCS2B01G254600 chr5B 652480871 652481597 726 False 922.0 922 90.1910 1726 2429 1 chr5B.!!$F1 703
6 TraesCS2B01G254600 chr7B 89658914 89659638 724 True 885.0 885 89.3440 1728 2429 1 chr7B.!!$R1 701
7 TraesCS2B01G254600 chr7D 521759218 521759942 724 False 712.0 712 85.0140 913 1618 1 chr7D.!!$F1 705
8 TraesCS2B01G254600 chr1B 7187829 7190205 2376 False 558.0 558 94.5535 1726 2442 2 chr1B.!!$F2 716
9 TraesCS2B01G254600 chr1B 7147829 7150212 2383 False 555.5 558 94.4260 1726 2442 2 chr1B.!!$F1 716
10 TraesCS2B01G254600 chr7A 19173296 19174029 733 False 417.0 555 91.0705 908 1594 2 chr7A.!!$F1 686
11 TraesCS2B01G254600 chr3B 104697280 104698021 741 True 514.0 514 80.8000 1726 2404 1 chr3B.!!$R1 678
12 TraesCS2B01G254600 chr1D 283695765 283696467 702 True 399.5 422 89.3600 1729 2429 2 chr1D.!!$R1 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.108281 GCTTTGTACGTCCCCTCCTC 60.108 60.0 0.0 0.0 0.0 3.71 F
128 129 0.115745 TTTGTACGTCCCCTCCTCCT 59.884 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1481 1583 0.679505 ACGCACTCTGGCTTCAACTA 59.320 50.000 0.0 0.0 0.0 2.24 R
2038 4070 2.356278 GGCCAGCATCACCAGGAA 59.644 61.111 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.947228 AATTCTCTCGCAAATTCTGTCAA 57.053 34.783 0.00 0.00 0.00 3.18
25 26 6.506500 AATTCTCTCGCAAATTCTGTCAAT 57.493 33.333 0.00 0.00 0.00 2.57
26 27 7.615582 AATTCTCTCGCAAATTCTGTCAATA 57.384 32.000 0.00 0.00 0.00 1.90
27 28 7.615582 ATTCTCTCGCAAATTCTGTCAATAA 57.384 32.000 0.00 0.00 0.00 1.40
28 29 6.653273 TCTCTCGCAAATTCTGTCAATAAG 57.347 37.500 0.00 0.00 0.00 1.73
29 30 6.398095 TCTCTCGCAAATTCTGTCAATAAGA 58.602 36.000 0.00 0.00 0.00 2.10
30 31 7.044181 TCTCTCGCAAATTCTGTCAATAAGAT 58.956 34.615 0.00 0.00 0.00 2.40
31 32 7.008440 TCTCGCAAATTCTGTCAATAAGATG 57.992 36.000 0.00 0.00 0.00 2.90
32 33 6.595326 TCTCGCAAATTCTGTCAATAAGATGT 59.405 34.615 0.00 0.00 0.00 3.06
33 34 7.119699 TCTCGCAAATTCTGTCAATAAGATGTT 59.880 33.333 0.00 0.00 0.00 2.71
34 35 8.262715 TCGCAAATTCTGTCAATAAGATGTTA 57.737 30.769 0.00 0.00 0.00 2.41
35 36 8.726068 TCGCAAATTCTGTCAATAAGATGTTAA 58.274 29.630 0.00 0.00 0.00 2.01
36 37 9.340695 CGCAAATTCTGTCAATAAGATGTTAAA 57.659 29.630 0.00 0.00 0.00 1.52
44 45 9.844790 CTGTCAATAAGATGTTAAAAGCAATCA 57.155 29.630 0.00 0.00 0.00 2.57
45 46 9.624697 TGTCAATAAGATGTTAAAAGCAATCAC 57.375 29.630 0.00 0.00 0.00 3.06
46 47 9.846248 GTCAATAAGATGTTAAAAGCAATCACT 57.154 29.630 0.00 0.00 0.00 3.41
53 54 9.453572 AGATGTTAAAAGCAATCACTTCTATGA 57.546 29.630 0.00 0.00 0.00 2.15
61 62 8.845413 AAGCAATCACTTCTATGATTCTATCC 57.155 34.615 0.00 0.00 44.30 2.59
62 63 7.971201 AGCAATCACTTCTATGATTCTATCCA 58.029 34.615 0.00 0.00 44.30 3.41
63 64 7.877097 AGCAATCACTTCTATGATTCTATCCAC 59.123 37.037 0.00 0.00 44.30 4.02
64 65 7.877097 GCAATCACTTCTATGATTCTATCCACT 59.123 37.037 0.00 0.00 44.30 4.00
65 66 9.421806 CAATCACTTCTATGATTCTATCCACTC 57.578 37.037 0.00 0.00 44.30 3.51
66 67 7.531857 TCACTTCTATGATTCTATCCACTCC 57.468 40.000 0.00 0.00 0.00 3.85
67 68 7.069344 TCACTTCTATGATTCTATCCACTCCA 58.931 38.462 0.00 0.00 0.00 3.86
68 69 7.565029 TCACTTCTATGATTCTATCCACTCCAA 59.435 37.037 0.00 0.00 0.00 3.53
69 70 7.655328 CACTTCTATGATTCTATCCACTCCAAC 59.345 40.741 0.00 0.00 0.00 3.77
70 71 6.672266 TCTATGATTCTATCCACTCCAACC 57.328 41.667 0.00 0.00 0.00 3.77
71 72 6.143206 TCTATGATTCTATCCACTCCAACCA 58.857 40.000 0.00 0.00 0.00 3.67
72 73 5.919348 ATGATTCTATCCACTCCAACCAT 57.081 39.130 0.00 0.00 0.00 3.55
73 74 7.955750 TCTATGATTCTATCCACTCCAACCATA 59.044 37.037 0.00 0.00 0.00 2.74
74 75 6.425210 TGATTCTATCCACTCCAACCATAG 57.575 41.667 0.00 0.00 0.00 2.23
75 76 5.905331 TGATTCTATCCACTCCAACCATAGT 59.095 40.000 0.00 0.00 0.00 2.12
76 77 5.614324 TTCTATCCACTCCAACCATAGTG 57.386 43.478 0.00 0.00 42.25 2.74
81 82 3.543680 CACTCCAACCATAGTGGGTAG 57.456 52.381 0.52 0.00 43.37 3.18
82 83 3.104512 CACTCCAACCATAGTGGGTAGA 58.895 50.000 0.52 0.00 43.37 2.59
83 84 3.105283 ACTCCAACCATAGTGGGTAGAC 58.895 50.000 0.52 0.00 43.37 2.59
84 85 2.434702 CTCCAACCATAGTGGGTAGACC 59.565 54.545 0.52 0.00 43.37 3.85
100 101 7.555306 GGGTAGACCAAGATATTTGTCTTTC 57.445 40.000 11.57 6.44 36.33 2.62
101 102 6.258068 GGGTAGACCAAGATATTTGTCTTTCG 59.742 42.308 11.57 0.00 36.33 3.46
102 103 5.803020 AGACCAAGATATTTGTCTTTCGC 57.197 39.130 1.16 0.00 36.33 4.70
103 104 4.636206 AGACCAAGATATTTGTCTTTCGCC 59.364 41.667 1.16 0.00 36.33 5.54
104 105 3.694566 ACCAAGATATTTGTCTTTCGCCC 59.305 43.478 0.00 0.00 36.33 6.13
105 106 3.947834 CCAAGATATTTGTCTTTCGCCCT 59.052 43.478 0.00 0.00 36.33 5.19
106 107 4.035675 CCAAGATATTTGTCTTTCGCCCTC 59.964 45.833 0.00 0.00 36.33 4.30
107 108 3.458189 AGATATTTGTCTTTCGCCCTCG 58.542 45.455 0.00 0.00 0.00 4.63
108 109 1.365699 TATTTGTCTTTCGCCCTCGC 58.634 50.000 0.00 0.00 35.26 5.03
109 110 0.321653 ATTTGTCTTTCGCCCTCGCT 60.322 50.000 0.00 0.00 35.26 4.93
110 111 0.534203 TTTGTCTTTCGCCCTCGCTT 60.534 50.000 0.00 0.00 35.26 4.68
111 112 0.534203 TTGTCTTTCGCCCTCGCTTT 60.534 50.000 0.00 0.00 35.26 3.51
112 113 1.227999 TGTCTTTCGCCCTCGCTTTG 61.228 55.000 0.00 0.00 35.26 2.77
113 114 1.070786 TCTTTCGCCCTCGCTTTGT 59.929 52.632 0.00 0.00 35.26 2.83
114 115 0.319083 TCTTTCGCCCTCGCTTTGTA 59.681 50.000 0.00 0.00 35.26 2.41
115 116 0.442699 CTTTCGCCCTCGCTTTGTAC 59.557 55.000 0.00 0.00 35.26 2.90
116 117 1.286354 TTTCGCCCTCGCTTTGTACG 61.286 55.000 0.00 0.00 35.26 3.67
117 118 2.424705 TTCGCCCTCGCTTTGTACGT 62.425 55.000 0.00 0.00 35.26 3.57
118 119 2.442188 CGCCCTCGCTTTGTACGTC 61.442 63.158 0.00 0.00 0.00 4.34
119 120 2.098831 GCCCTCGCTTTGTACGTCC 61.099 63.158 0.00 0.00 0.00 4.79
120 121 1.447314 CCCTCGCTTTGTACGTCCC 60.447 63.158 0.00 0.00 0.00 4.46
121 122 1.447314 CCTCGCTTTGTACGTCCCC 60.447 63.158 0.00 0.00 0.00 4.81
122 123 1.590147 CTCGCTTTGTACGTCCCCT 59.410 57.895 0.00 0.00 0.00 4.79
123 124 0.458025 CTCGCTTTGTACGTCCCCTC 60.458 60.000 0.00 0.00 0.00 4.30
124 125 1.447314 CGCTTTGTACGTCCCCTCC 60.447 63.158 0.00 0.00 0.00 4.30
125 126 1.885163 CGCTTTGTACGTCCCCTCCT 61.885 60.000 0.00 0.00 0.00 3.69
126 127 0.108281 GCTTTGTACGTCCCCTCCTC 60.108 60.000 0.00 0.00 0.00 3.71
127 128 0.535797 CTTTGTACGTCCCCTCCTCC 59.464 60.000 0.00 0.00 0.00 4.30
128 129 0.115745 TTTGTACGTCCCCTCCTCCT 59.884 55.000 0.00 0.00 0.00 3.69
129 130 0.324091 TTGTACGTCCCCTCCTCCTC 60.324 60.000 0.00 0.00 0.00 3.71
130 131 1.455402 GTACGTCCCCTCCTCCTCC 60.455 68.421 0.00 0.00 0.00 4.30
131 132 1.621822 TACGTCCCCTCCTCCTCCT 60.622 63.158 0.00 0.00 0.00 3.69
132 133 1.643475 TACGTCCCCTCCTCCTCCTC 61.643 65.000 0.00 0.00 0.00 3.71
133 134 2.123640 GTCCCCTCCTCCTCCTCG 60.124 72.222 0.00 0.00 0.00 4.63
134 135 2.286962 TCCCCTCCTCCTCCTCGA 60.287 66.667 0.00 0.00 0.00 4.04
135 136 1.701757 TCCCCTCCTCCTCCTCGAT 60.702 63.158 0.00 0.00 0.00 3.59
136 137 1.234529 CCCCTCCTCCTCCTCGATT 59.765 63.158 0.00 0.00 0.00 3.34
137 138 0.399233 CCCCTCCTCCTCCTCGATTT 60.399 60.000 0.00 0.00 0.00 2.17
138 139 1.044611 CCCTCCTCCTCCTCGATTTC 58.955 60.000 0.00 0.00 0.00 2.17
139 140 1.412361 CCCTCCTCCTCCTCGATTTCT 60.412 57.143 0.00 0.00 0.00 2.52
140 141 2.393646 CCTCCTCCTCCTCGATTTCTT 58.606 52.381 0.00 0.00 0.00 2.52
141 142 2.769095 CCTCCTCCTCCTCGATTTCTTT 59.231 50.000 0.00 0.00 0.00 2.52
142 143 3.198853 CCTCCTCCTCCTCGATTTCTTTT 59.801 47.826 0.00 0.00 0.00 2.27
143 144 4.438148 CTCCTCCTCCTCGATTTCTTTTC 58.562 47.826 0.00 0.00 0.00 2.29
144 145 4.097418 TCCTCCTCCTCGATTTCTTTTCT 58.903 43.478 0.00 0.00 0.00 2.52
145 146 4.081420 TCCTCCTCCTCGATTTCTTTTCTG 60.081 45.833 0.00 0.00 0.00 3.02
146 147 3.600388 TCCTCCTCGATTTCTTTTCTGC 58.400 45.455 0.00 0.00 0.00 4.26
147 148 2.680339 CCTCCTCGATTTCTTTTCTGCC 59.320 50.000 0.00 0.00 0.00 4.85
148 149 3.604582 CTCCTCGATTTCTTTTCTGCCT 58.395 45.455 0.00 0.00 0.00 4.75
149 150 3.600388 TCCTCGATTTCTTTTCTGCCTC 58.400 45.455 0.00 0.00 0.00 4.70
150 151 3.261897 TCCTCGATTTCTTTTCTGCCTCT 59.738 43.478 0.00 0.00 0.00 3.69
151 152 4.006319 CCTCGATTTCTTTTCTGCCTCTT 58.994 43.478 0.00 0.00 0.00 2.85
152 153 4.094146 CCTCGATTTCTTTTCTGCCTCTTC 59.906 45.833 0.00 0.00 0.00 2.87
153 154 3.679980 TCGATTTCTTTTCTGCCTCTTCG 59.320 43.478 0.00 0.00 0.00 3.79
154 155 3.181516 CGATTTCTTTTCTGCCTCTTCGG 60.182 47.826 0.00 0.00 0.00 4.30
155 156 2.930826 TTCTTTTCTGCCTCTTCGGT 57.069 45.000 0.00 0.00 34.25 4.69
156 157 2.457366 TCTTTTCTGCCTCTTCGGTC 57.543 50.000 0.00 0.00 34.25 4.79
157 158 1.971357 TCTTTTCTGCCTCTTCGGTCT 59.029 47.619 0.00 0.00 34.25 3.85
158 159 2.368875 TCTTTTCTGCCTCTTCGGTCTT 59.631 45.455 0.00 0.00 34.25 3.01
159 160 2.457366 TTTCTGCCTCTTCGGTCTTC 57.543 50.000 0.00 0.00 34.25 2.87
160 161 1.633774 TTCTGCCTCTTCGGTCTTCT 58.366 50.000 0.00 0.00 34.25 2.85
161 162 1.178276 TCTGCCTCTTCGGTCTTCTC 58.822 55.000 0.00 0.00 34.25 2.87
162 163 0.174617 CTGCCTCTTCGGTCTTCTCC 59.825 60.000 0.00 0.00 34.25 3.71
163 164 1.258445 TGCCTCTTCGGTCTTCTCCC 61.258 60.000 0.00 0.00 34.25 4.30
164 165 1.962321 GCCTCTTCGGTCTTCTCCCC 61.962 65.000 0.00 0.00 34.25 4.81
165 166 1.668101 CCTCTTCGGTCTTCTCCCCG 61.668 65.000 0.00 0.00 45.55 5.73
166 167 2.184579 CTTCGGTCTTCTCCCCGC 59.815 66.667 0.00 0.00 43.87 6.13
167 168 2.602267 TTCGGTCTTCTCCCCGCA 60.602 61.111 0.00 0.00 43.87 5.69
168 169 2.167398 CTTCGGTCTTCTCCCCGCAA 62.167 60.000 0.00 0.00 43.87 4.85
169 170 2.434359 CGGTCTTCTCCCCGCAAC 60.434 66.667 0.00 0.00 37.43 4.17
170 171 2.046217 GGTCTTCTCCCCGCAACC 60.046 66.667 0.00 0.00 0.00 3.77
171 172 2.046217 GTCTTCTCCCCGCAACCC 60.046 66.667 0.00 0.00 0.00 4.11
172 173 2.528127 TCTTCTCCCCGCAACCCA 60.528 61.111 0.00 0.00 0.00 4.51
173 174 2.150719 TCTTCTCCCCGCAACCCAA 61.151 57.895 0.00 0.00 0.00 4.12
174 175 1.000896 CTTCTCCCCGCAACCCAAT 60.001 57.895 0.00 0.00 0.00 3.16
175 176 1.001393 TTCTCCCCGCAACCCAATC 60.001 57.895 0.00 0.00 0.00 2.67
176 177 1.497309 TTCTCCCCGCAACCCAATCT 61.497 55.000 0.00 0.00 0.00 2.40
191 192 1.131638 AATCTCTTATGAGGCCGGCA 58.868 50.000 30.85 8.42 40.58 5.69
194 195 0.683973 CTCTTATGAGGCCGGCAGAT 59.316 55.000 30.85 18.37 36.70 2.90
202 203 1.448893 GGCCGGCAGATACAACGAA 60.449 57.895 30.85 0.00 0.00 3.85
235 236 4.530857 CCTCCCCCACGCGACATC 62.531 72.222 15.93 0.00 0.00 3.06
247 248 1.520564 CGACATCGAAATCCCGCCA 60.521 57.895 0.00 0.00 43.02 5.69
279 280 1.944676 CGATTACGCTCACGCCTCC 60.945 63.158 0.00 0.00 45.53 4.30
373 374 3.402681 CTCCCCACGCACTCCCAT 61.403 66.667 0.00 0.00 0.00 4.00
402 403 1.002250 GGTACTATGTCATCGCGCCG 61.002 60.000 0.00 0.00 0.00 6.46
625 633 0.674581 TGCTGCTCGTTTGGATCCAG 60.675 55.000 15.53 3.61 0.00 3.86
637 645 1.838846 GATCCAGGGATCCGCCTCA 60.839 63.158 15.98 0.00 43.71 3.86
648 656 1.224315 CCGCCTCATGATGGGTTCA 59.776 57.895 12.81 0.00 39.12 3.18
989 1015 5.240623 ACCAATTCTGAATTCAGCGTTGTTA 59.759 36.000 29.92 15.14 43.46 2.41
990 1016 6.071952 ACCAATTCTGAATTCAGCGTTGTTAT 60.072 34.615 29.92 20.75 43.46 1.89
1115 1142 3.188254 CGAACAAATGCATACAGTGGACA 59.812 43.478 0.00 0.00 0.00 4.02
1196 1223 4.269523 TCAAAGCTGGGCTGGCGT 62.270 61.111 0.00 0.00 39.62 5.68
1222 1249 2.368221 GCTAGAGATCACAGAGGGCATT 59.632 50.000 0.00 0.00 0.00 3.56
1237 1264 4.922206 AGGGCATTTATTCTTGTCAGTCA 58.078 39.130 0.00 0.00 0.00 3.41
1314 1343 2.177531 GGACTGCATGCACTTGCG 59.822 61.111 18.46 9.49 45.77 4.85
1352 1381 5.885449 AAAAATCAATTGGAGGTGGACAA 57.115 34.783 5.42 0.00 0.00 3.18
1363 1426 3.335579 GAGGTGGACAACAAGTGGATAC 58.664 50.000 0.00 0.00 0.00 2.24
1481 1583 8.018286 AGGTAACAAGATGGCACATGAATTAGT 61.018 37.037 0.00 0.00 42.54 2.24
1716 1818 4.212214 GCAGATTGAATAGATGAACCGGTC 59.788 45.833 8.04 1.72 0.00 4.79
1833 1939 6.459670 AGTTTCTAAAACCGGACAAAACAT 57.540 33.333 9.46 0.00 0.00 2.71
1855 1961 2.433436 CCCTAAGCCTGTTTTAAGCGT 58.567 47.619 0.00 0.00 0.00 5.07
2038 4070 2.125773 AGTAATCCTCGACGAGTGGT 57.874 50.000 22.61 8.53 35.13 4.16
2349 6094 0.596600 CAGCTTCCGTGTACGTGTGT 60.597 55.000 0.00 0.00 37.74 3.72
2364 6109 1.331756 GTGTGTGTCAAGCTGGTTGAG 59.668 52.381 21.37 0.00 46.18 3.02
2430 6178 4.364817 CCAACTTTGGGTACGCGA 57.635 55.556 15.93 0.00 44.70 5.87
2431 6179 2.619362 CCAACTTTGGGTACGCGAA 58.381 52.632 15.93 11.76 44.70 4.70
2433 6181 1.135803 CCAACTTTGGGTACGCGAATG 60.136 52.381 15.93 9.23 44.70 2.67
2435 6183 1.886886 ACTTTGGGTACGCGAATGTT 58.113 45.000 15.93 0.00 0.00 2.71
2436 6184 3.042871 ACTTTGGGTACGCGAATGTTA 57.957 42.857 15.93 0.00 0.00 2.41
2437 6185 2.738314 ACTTTGGGTACGCGAATGTTAC 59.262 45.455 15.93 3.82 0.00 2.50
2438 6186 1.348276 TTGGGTACGCGAATGTTACG 58.652 50.000 15.93 0.00 0.00 3.18
2440 6188 1.470494 TGGGTACGCGAATGTTACGTA 59.530 47.619 15.93 0.00 40.99 3.57
2441 6189 2.098934 TGGGTACGCGAATGTTACGTAT 59.901 45.455 15.93 0.00 43.35 3.06
2442 6190 2.721090 GGGTACGCGAATGTTACGTATC 59.279 50.000 15.93 0.00 43.35 2.24
2443 6191 3.548818 GGGTACGCGAATGTTACGTATCT 60.549 47.826 15.93 0.00 43.35 1.98
2444 6192 4.319477 GGGTACGCGAATGTTACGTATCTA 60.319 45.833 15.93 0.00 43.35 1.98
2445 6193 5.204833 GGTACGCGAATGTTACGTATCTAA 58.795 41.667 15.93 0.00 43.35 2.10
2446 6194 5.114124 GGTACGCGAATGTTACGTATCTAAC 59.886 44.000 15.93 0.00 43.35 2.34
2447 6195 4.037690 ACGCGAATGTTACGTATCTAACC 58.962 43.478 15.93 0.00 38.45 2.85
2448 6196 4.201950 ACGCGAATGTTACGTATCTAACCT 60.202 41.667 15.93 0.00 38.45 3.50
2449 6197 5.007626 ACGCGAATGTTACGTATCTAACCTA 59.992 40.000 15.93 0.00 38.45 3.08
2450 6198 6.082338 CGCGAATGTTACGTATCTAACCTAT 58.918 40.000 0.00 0.00 0.00 2.57
2451 6199 7.095229 ACGCGAATGTTACGTATCTAACCTATA 60.095 37.037 15.93 0.00 38.45 1.31
2452 6200 7.746034 CGCGAATGTTACGTATCTAACCTATAA 59.254 37.037 0.00 0.00 0.00 0.98
2453 6201 9.398170 GCGAATGTTACGTATCTAACCTATAAA 57.602 33.333 0.00 0.00 0.00 1.40
2458 6206 8.559536 TGTTACGTATCTAACCTATAAACCTCG 58.440 37.037 0.00 0.00 0.00 4.63
2459 6207 6.006759 ACGTATCTAACCTATAAACCTCGC 57.993 41.667 0.00 0.00 0.00 5.03
2460 6208 5.767168 ACGTATCTAACCTATAAACCTCGCT 59.233 40.000 0.00 0.00 0.00 4.93
2461 6209 6.936900 ACGTATCTAACCTATAAACCTCGCTA 59.063 38.462 0.00 0.00 0.00 4.26
2462 6210 7.118971 ACGTATCTAACCTATAAACCTCGCTAG 59.881 40.741 0.00 0.00 0.00 3.42
2463 6211 7.332926 CGTATCTAACCTATAAACCTCGCTAGA 59.667 40.741 0.00 0.00 0.00 2.43
2464 6212 7.690952 ATCTAACCTATAAACCTCGCTAGAG 57.309 40.000 0.00 0.00 43.98 2.43
2465 6213 6.599445 TCTAACCTATAAACCTCGCTAGAGT 58.401 40.000 0.00 0.00 42.86 3.24
2466 6214 7.739825 TCTAACCTATAAACCTCGCTAGAGTA 58.260 38.462 0.00 0.00 42.86 2.59
2467 6215 6.631971 AACCTATAAACCTCGCTAGAGTAC 57.368 41.667 0.00 0.00 42.86 2.73
2468 6216 5.069318 ACCTATAAACCTCGCTAGAGTACC 58.931 45.833 0.00 0.00 42.86 3.34
2469 6217 4.458642 CCTATAAACCTCGCTAGAGTACCC 59.541 50.000 0.00 0.00 42.86 3.69
2470 6218 1.101331 AAACCTCGCTAGAGTACCCG 58.899 55.000 0.00 0.00 42.86 5.28
2471 6219 1.382692 AACCTCGCTAGAGTACCCGC 61.383 60.000 0.00 0.00 42.86 6.13
2472 6220 2.632541 CTCGCTAGAGTACCCGCG 59.367 66.667 0.00 0.00 46.28 6.46
2473 6221 2.124983 TCGCTAGAGTACCCGCGT 60.125 61.111 4.92 0.00 45.25 6.01
2474 6222 0.877649 CTCGCTAGAGTACCCGCGTA 60.878 60.000 4.92 0.00 45.25 4.42
2475 6223 0.461870 TCGCTAGAGTACCCGCGTAA 60.462 55.000 4.92 0.00 45.25 3.18
2476 6224 0.316524 CGCTAGAGTACCCGCGTAAC 60.317 60.000 4.92 0.00 40.64 2.50
2477 6225 1.020437 GCTAGAGTACCCGCGTAACT 58.980 55.000 4.92 5.02 0.00 2.24
2478 6226 1.268437 GCTAGAGTACCCGCGTAACTG 60.268 57.143 4.92 0.00 0.00 3.16
2479 6227 1.332997 CTAGAGTACCCGCGTAACTGG 59.667 57.143 4.92 0.00 0.00 4.00
2480 6228 0.322816 AGAGTACCCGCGTAACTGGA 60.323 55.000 4.92 0.00 0.00 3.86
2481 6229 0.100146 GAGTACCCGCGTAACTGGAG 59.900 60.000 4.92 0.00 0.00 3.86
2482 6230 1.140375 GTACCCGCGTAACTGGAGG 59.860 63.158 4.92 0.00 0.00 4.30
2483 6231 2.713967 TACCCGCGTAACTGGAGGC 61.714 63.158 4.92 0.00 0.00 4.70
2484 6232 4.077184 CCCGCGTAACTGGAGGCA 62.077 66.667 4.92 0.00 0.00 4.75
2485 6233 2.186903 CCGCGTAACTGGAGGCAT 59.813 61.111 4.92 0.00 0.00 4.40
2486 6234 1.883084 CCGCGTAACTGGAGGCATC 60.883 63.158 4.92 0.00 0.00 3.91
2487 6235 2.230940 CGCGTAACTGGAGGCATCG 61.231 63.158 0.00 0.00 0.00 3.84
2488 6236 2.526120 GCGTAACTGGAGGCATCGC 61.526 63.158 0.00 0.00 35.86 4.58
2489 6237 1.141881 CGTAACTGGAGGCATCGCT 59.858 57.895 0.00 0.00 0.00 4.93
2490 6238 0.872021 CGTAACTGGAGGCATCGCTC 60.872 60.000 0.00 0.00 0.00 5.03
2491 6239 0.872021 GTAACTGGAGGCATCGCTCG 60.872 60.000 0.00 0.00 0.00 5.03
2492 6240 2.629050 TAACTGGAGGCATCGCTCGC 62.629 60.000 0.00 0.00 0.00 5.03
2504 6252 4.322385 GCTCGCGCCCAACGTTTT 62.322 61.111 0.00 0.00 46.11 2.43
2505 6253 2.330041 CTCGCGCCCAACGTTTTT 59.670 55.556 0.00 0.00 46.11 1.94
2506 6254 2.008697 CTCGCGCCCAACGTTTTTG 61.009 57.895 0.00 0.00 46.11 2.44
2507 6255 2.024871 CGCGCCCAACGTTTTTGA 59.975 55.556 0.00 0.00 46.11 2.69
2508 6256 2.290082 CGCGCCCAACGTTTTTGAC 61.290 57.895 0.00 0.00 46.11 3.18
2509 6257 1.947146 GCGCCCAACGTTTTTGACC 60.947 57.895 0.00 0.00 46.11 4.02
2510 6258 1.655959 CGCCCAACGTTTTTGACCG 60.656 57.895 0.00 0.00 36.87 4.79
2511 6259 1.947146 GCCCAACGTTTTTGACCGC 60.947 57.895 0.00 0.00 0.00 5.68
2512 6260 1.731093 CCCAACGTTTTTGACCGCT 59.269 52.632 0.00 0.00 0.00 5.52
2513 6261 0.317519 CCCAACGTTTTTGACCGCTC 60.318 55.000 0.00 0.00 0.00 5.03
2514 6262 0.656205 CCAACGTTTTTGACCGCTCG 60.656 55.000 0.00 0.00 0.00 5.03
2515 6263 0.302288 CAACGTTTTTGACCGCTCGA 59.698 50.000 0.00 0.00 0.00 4.04
2516 6264 1.070175 CAACGTTTTTGACCGCTCGAT 60.070 47.619 0.00 0.00 0.00 3.59
2517 6265 1.223187 ACGTTTTTGACCGCTCGATT 58.777 45.000 0.00 0.00 0.00 3.34
2518 6266 1.070175 ACGTTTTTGACCGCTCGATTG 60.070 47.619 0.00 0.00 0.00 2.67
2519 6267 1.193650 CGTTTTTGACCGCTCGATTGA 59.806 47.619 0.00 0.00 0.00 2.57
2520 6268 2.349060 CGTTTTTGACCGCTCGATTGAA 60.349 45.455 0.00 0.00 0.00 2.69
2521 6269 3.666902 CGTTTTTGACCGCTCGATTGAAT 60.667 43.478 0.00 0.00 0.00 2.57
2522 6270 4.226761 GTTTTTGACCGCTCGATTGAATT 58.773 39.130 0.00 0.00 0.00 2.17
2523 6271 5.387279 GTTTTTGACCGCTCGATTGAATTA 58.613 37.500 0.00 0.00 0.00 1.40
2524 6272 4.593597 TTTGACCGCTCGATTGAATTAC 57.406 40.909 0.00 0.00 0.00 1.89
2525 6273 3.239587 TGACCGCTCGATTGAATTACA 57.760 42.857 0.00 0.00 0.00 2.41
2526 6274 3.591023 TGACCGCTCGATTGAATTACAA 58.409 40.909 0.00 0.00 42.95 2.41
2527 6275 3.369756 TGACCGCTCGATTGAATTACAAC 59.630 43.478 0.00 0.00 41.52 3.32
2528 6276 3.331150 ACCGCTCGATTGAATTACAACA 58.669 40.909 0.00 0.00 41.52 3.33
2529 6277 3.370978 ACCGCTCGATTGAATTACAACAG 59.629 43.478 0.00 0.00 41.52 3.16
2530 6278 3.370978 CCGCTCGATTGAATTACAACAGT 59.629 43.478 0.00 0.00 41.52 3.55
2531 6279 4.326205 CGCTCGATTGAATTACAACAGTG 58.674 43.478 0.00 0.00 41.52 3.66
2532 6280 4.091365 CGCTCGATTGAATTACAACAGTGA 59.909 41.667 0.00 0.00 41.52 3.41
2533 6281 5.220472 CGCTCGATTGAATTACAACAGTGAT 60.220 40.000 0.00 0.00 41.52 3.06
2534 6282 6.546395 GCTCGATTGAATTACAACAGTGATT 58.454 36.000 0.00 0.00 41.52 2.57
2535 6283 7.023575 GCTCGATTGAATTACAACAGTGATTT 58.976 34.615 0.00 0.00 41.52 2.17
2536 6284 7.538678 GCTCGATTGAATTACAACAGTGATTTT 59.461 33.333 0.00 0.00 41.52 1.82
2537 6285 9.398170 CTCGATTGAATTACAACAGTGATTTTT 57.602 29.630 0.00 0.00 41.52 1.94
2565 6313 4.308458 CGGCTGGTCAACCGTCCA 62.308 66.667 4.79 0.00 44.46 4.02
2566 6314 2.668550 GGCTGGTCAACCGTCCAC 60.669 66.667 5.06 0.00 39.43 4.02
2567 6315 2.426023 GCTGGTCAACCGTCCACT 59.574 61.111 0.00 0.00 39.43 4.00
2568 6316 1.961277 GCTGGTCAACCGTCCACTG 60.961 63.158 0.00 0.00 39.43 3.66
2569 6317 1.445942 CTGGTCAACCGTCCACTGT 59.554 57.895 0.00 0.00 39.43 3.55
2570 6318 0.179056 CTGGTCAACCGTCCACTGTT 60.179 55.000 0.00 0.00 39.43 3.16
2571 6319 0.253610 TGGTCAACCGTCCACTGTTT 59.746 50.000 0.00 0.00 39.43 2.83
2572 6320 1.340211 TGGTCAACCGTCCACTGTTTT 60.340 47.619 0.00 0.00 39.43 2.43
2573 6321 1.746787 GGTCAACCGTCCACTGTTTTT 59.253 47.619 0.00 0.00 0.00 1.94
2574 6322 2.223409 GGTCAACCGTCCACTGTTTTTC 60.223 50.000 0.00 0.00 0.00 2.29
2575 6323 2.420722 GTCAACCGTCCACTGTTTTTCA 59.579 45.455 0.00 0.00 0.00 2.69
2576 6324 2.420722 TCAACCGTCCACTGTTTTTCAC 59.579 45.455 0.00 0.00 0.00 3.18
2577 6325 1.011333 ACCGTCCACTGTTTTTCACG 58.989 50.000 0.00 0.00 0.00 4.35
2578 6326 1.011333 CCGTCCACTGTTTTTCACGT 58.989 50.000 0.00 0.00 0.00 4.49
2579 6327 1.399089 CCGTCCACTGTTTTTCACGTT 59.601 47.619 0.00 0.00 0.00 3.99
2580 6328 2.159490 CCGTCCACTGTTTTTCACGTTT 60.159 45.455 0.00 0.00 0.00 3.60
2581 6329 3.063725 CCGTCCACTGTTTTTCACGTTTA 59.936 43.478 0.00 0.00 0.00 2.01
2582 6330 4.437121 CCGTCCACTGTTTTTCACGTTTAA 60.437 41.667 0.00 0.00 0.00 1.52
2583 6331 4.726704 CGTCCACTGTTTTTCACGTTTAAG 59.273 41.667 0.00 0.00 0.00 1.85
2584 6332 5.446206 CGTCCACTGTTTTTCACGTTTAAGA 60.446 40.000 0.00 0.00 0.00 2.10
2585 6333 5.735892 GTCCACTGTTTTTCACGTTTAAGAC 59.264 40.000 0.00 0.00 0.00 3.01
2586 6334 5.032220 CCACTGTTTTTCACGTTTAAGACC 58.968 41.667 0.00 0.00 0.00 3.85
2587 6335 4.726704 CACTGTTTTTCACGTTTAAGACCG 59.273 41.667 0.00 0.00 0.00 4.79
2588 6336 4.392754 ACTGTTTTTCACGTTTAAGACCGT 59.607 37.500 0.00 0.00 37.90 4.83
2594 6342 1.790623 CACGTTTAAGACCGTGTCAGG 59.209 52.381 13.18 0.00 46.87 3.86
2595 6343 1.682854 ACGTTTAAGACCGTGTCAGGA 59.317 47.619 6.78 0.00 35.69 3.86
2596 6344 2.288030 ACGTTTAAGACCGTGTCAGGAG 60.288 50.000 6.78 0.00 35.69 3.69
2597 6345 2.030540 CGTTTAAGACCGTGTCAGGAGA 60.031 50.000 6.78 0.00 34.60 3.71
2598 6346 3.576648 GTTTAAGACCGTGTCAGGAGAG 58.423 50.000 6.78 0.00 34.60 3.20
2599 6347 2.873094 TAAGACCGTGTCAGGAGAGA 57.127 50.000 6.78 0.00 34.60 3.10
2600 6348 1.996798 AAGACCGTGTCAGGAGAGAA 58.003 50.000 6.78 0.00 34.60 2.87
2601 6349 2.223803 AGACCGTGTCAGGAGAGAAT 57.776 50.000 6.78 0.00 34.60 2.40
2602 6350 1.821753 AGACCGTGTCAGGAGAGAATG 59.178 52.381 6.78 0.00 34.60 2.67
2603 6351 1.819288 GACCGTGTCAGGAGAGAATGA 59.181 52.381 0.00 0.00 32.09 2.57
2604 6352 1.546476 ACCGTGTCAGGAGAGAATGAC 59.454 52.381 0.00 0.00 44.88 3.06
2608 6356 1.187087 GTCAGGAGAGAATGACGGGT 58.813 55.000 0.00 0.00 36.76 5.28
2609 6357 1.134965 GTCAGGAGAGAATGACGGGTG 60.135 57.143 0.00 0.00 36.76 4.61
2610 6358 0.176680 CAGGAGAGAATGACGGGTGG 59.823 60.000 0.00 0.00 0.00 4.61
2611 6359 0.978146 AGGAGAGAATGACGGGTGGG 60.978 60.000 0.00 0.00 0.00 4.61
2612 6360 1.522569 GAGAGAATGACGGGTGGGG 59.477 63.158 0.00 0.00 0.00 4.96
2613 6361 1.229529 AGAGAATGACGGGTGGGGT 60.230 57.895 0.00 0.00 0.00 4.95
2614 6362 1.221021 GAGAATGACGGGTGGGGTC 59.779 63.158 0.00 0.00 34.99 4.46
2618 6366 2.203862 TGACGGGTGGGGTCATGA 60.204 61.111 0.00 0.00 39.36 3.07
2619 6367 2.290287 TGACGGGTGGGGTCATGAG 61.290 63.158 0.00 0.00 39.36 2.90
2620 6368 3.682292 GACGGGTGGGGTCATGAGC 62.682 68.421 16.65 16.65 34.56 4.26
2628 6376 4.265206 GGTCATGAGCCAATGGGG 57.735 61.111 14.08 0.00 40.85 4.96
2629 6377 1.456331 GGTCATGAGCCAATGGGGG 60.456 63.158 14.08 0.00 37.04 5.40
2637 6385 2.123164 CCAATGGGGGCCATCCAG 60.123 66.667 19.74 9.21 44.40 3.86
2638 6386 2.841044 CAATGGGGGCCATCCAGC 60.841 66.667 19.74 0.00 44.40 4.85
2639 6387 3.357952 AATGGGGGCCATCCAGCA 61.358 61.111 19.74 1.96 44.40 4.41
2640 6388 3.384555 AATGGGGGCCATCCAGCAG 62.385 63.158 19.74 0.00 44.40 4.24
2642 6390 4.201122 GGGGGCCATCCAGCAGAG 62.201 72.222 4.39 0.00 37.22 3.35
2643 6391 4.201122 GGGGCCATCCAGCAGAGG 62.201 72.222 4.39 0.00 37.22 3.69
2648 6396 3.238438 CATCCAGCAGAGGGAGGG 58.762 66.667 0.00 0.00 37.96 4.30
2649 6397 1.692042 CATCCAGCAGAGGGAGGGT 60.692 63.158 0.00 0.00 37.96 4.34
2650 6398 1.083706 ATCCAGCAGAGGGAGGGTT 59.916 57.895 0.00 0.00 37.96 4.11
2651 6399 0.551131 ATCCAGCAGAGGGAGGGTTT 60.551 55.000 0.00 0.00 37.96 3.27
2652 6400 1.201429 TCCAGCAGAGGGAGGGTTTC 61.201 60.000 0.00 0.00 0.00 2.78
2653 6401 1.301293 CAGCAGAGGGAGGGTTTCC 59.699 63.158 0.00 0.00 46.00 3.13
2655 6403 1.204113 AGCAGAGGGAGGGTTTCCTG 61.204 60.000 0.00 0.00 45.05 3.86
2656 6404 1.994463 CAGAGGGAGGGTTTCCTGG 59.006 63.158 0.00 0.00 45.05 4.45
2657 6405 0.547712 CAGAGGGAGGGTTTCCTGGA 60.548 60.000 0.00 0.00 45.05 3.86
2658 6406 0.252927 AGAGGGAGGGTTTCCTGGAG 60.253 60.000 0.00 0.00 45.05 3.86
2659 6407 1.916206 GAGGGAGGGTTTCCTGGAGC 61.916 65.000 0.00 0.00 45.05 4.70
2660 6408 2.677848 GGAGGGTTTCCTGGAGCC 59.322 66.667 9.96 9.96 45.05 4.70
2661 6409 2.677848 GAGGGTTTCCTGGAGCCC 59.322 66.667 23.22 23.22 45.05 5.19
2662 6410 2.121506 AGGGTTTCCTGGAGCCCA 60.122 61.111 28.68 1.85 42.98 5.36
2671 6419 4.248908 TGGAGCCCAGGTCAATGA 57.751 55.556 0.00 0.00 0.00 2.57
2672 6420 2.713967 TGGAGCCCAGGTCAATGAT 58.286 52.632 0.00 0.00 0.00 2.45
2673 6421 1.002069 TGGAGCCCAGGTCAATGATT 58.998 50.000 0.00 0.00 0.00 2.57
2674 6422 1.341285 TGGAGCCCAGGTCAATGATTG 60.341 52.381 0.00 0.00 0.00 2.67
2675 6423 1.396653 GAGCCCAGGTCAATGATTGG 58.603 55.000 5.20 9.06 0.00 3.16
2676 6424 0.685458 AGCCCAGGTCAATGATTGGC 60.685 55.000 5.20 2.78 37.68 4.52
2677 6425 0.685458 GCCCAGGTCAATGATTGGCT 60.685 55.000 9.85 0.00 35.12 4.75
2678 6426 1.108776 CCCAGGTCAATGATTGGCTG 58.891 55.000 9.85 6.07 35.12 4.85
2679 6427 1.341285 CCCAGGTCAATGATTGGCTGA 60.341 52.381 9.85 0.00 35.12 4.26
2680 6428 2.449464 CCAGGTCAATGATTGGCTGAA 58.551 47.619 9.85 0.00 35.12 3.02
2681 6429 3.028850 CCAGGTCAATGATTGGCTGAAT 58.971 45.455 9.85 0.00 35.12 2.57
2682 6430 3.181479 CCAGGTCAATGATTGGCTGAATG 60.181 47.826 9.85 4.21 35.12 2.67
2683 6431 3.446161 CAGGTCAATGATTGGCTGAATGT 59.554 43.478 9.85 0.00 35.12 2.71
2684 6432 3.446161 AGGTCAATGATTGGCTGAATGTG 59.554 43.478 9.85 0.00 35.12 3.21
2685 6433 3.429822 GGTCAATGATTGGCTGAATGTGG 60.430 47.826 9.85 0.00 35.12 4.17
2686 6434 2.761767 TCAATGATTGGCTGAATGTGGG 59.238 45.455 5.20 0.00 0.00 4.61
2687 6435 2.498481 CAATGATTGGCTGAATGTGGGT 59.502 45.455 0.00 0.00 0.00 4.51
2688 6436 2.307496 TGATTGGCTGAATGTGGGTT 57.693 45.000 0.00 0.00 0.00 4.11
2689 6437 1.894466 TGATTGGCTGAATGTGGGTTG 59.106 47.619 0.00 0.00 0.00 3.77
2690 6438 1.895131 GATTGGCTGAATGTGGGTTGT 59.105 47.619 0.00 0.00 0.00 3.32
2691 6439 1.786937 TTGGCTGAATGTGGGTTGTT 58.213 45.000 0.00 0.00 0.00 2.83
2692 6440 1.327303 TGGCTGAATGTGGGTTGTTC 58.673 50.000 0.00 0.00 0.00 3.18
2693 6441 0.603065 GGCTGAATGTGGGTTGTTCC 59.397 55.000 0.00 0.00 0.00 3.62
2702 6450 3.284336 GGTTGTTCCCGATTGGCC 58.716 61.111 0.00 0.00 0.00 5.36
2703 6451 1.605165 GGTTGTTCCCGATTGGCCA 60.605 57.895 0.00 0.00 0.00 5.36
2704 6452 1.595093 GGTTGTTCCCGATTGGCCAG 61.595 60.000 5.11 0.00 0.00 4.85
2705 6453 1.304052 TTGTTCCCGATTGGCCAGG 60.304 57.895 5.11 3.46 0.00 4.45
2706 6454 1.784301 TTGTTCCCGATTGGCCAGGA 61.784 55.000 11.07 9.22 0.00 3.86
2707 6455 1.749258 GTTCCCGATTGGCCAGGAC 60.749 63.158 10.89 0.00 0.00 3.85
2708 6456 2.978946 TTCCCGATTGGCCAGGACC 61.979 63.158 10.89 0.00 0.00 4.46
2709 6457 3.727258 CCCGATTGGCCAGGACCA 61.727 66.667 11.07 0.00 38.16 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.433708 TTGACAGAATTTGCGAGAGAATTAA 57.566 32.000 0.00 0.00 0.00 1.40
3 4 7.550551 TCTTATTGACAGAATTTGCGAGAGAAT 59.449 33.333 0.00 0.00 0.00 2.40
5 6 6.398095 TCTTATTGACAGAATTTGCGAGAGA 58.602 36.000 0.00 0.00 0.00 3.10
6 7 6.653273 TCTTATTGACAGAATTTGCGAGAG 57.347 37.500 0.00 0.00 0.00 3.20
7 8 6.595326 ACATCTTATTGACAGAATTTGCGAGA 59.405 34.615 0.00 0.00 0.00 4.04
8 9 6.779117 ACATCTTATTGACAGAATTTGCGAG 58.221 36.000 0.00 0.00 0.00 5.03
9 10 6.741992 ACATCTTATTGACAGAATTTGCGA 57.258 33.333 0.00 0.00 0.00 5.10
10 11 8.894409 TTAACATCTTATTGACAGAATTTGCG 57.106 30.769 0.00 0.00 0.00 4.85
18 19 9.844790 TGATTGCTTTTAACATCTTATTGACAG 57.155 29.630 0.00 0.00 0.00 3.51
19 20 9.624697 GTGATTGCTTTTAACATCTTATTGACA 57.375 29.630 0.00 0.00 0.00 3.58
20 21 9.846248 AGTGATTGCTTTTAACATCTTATTGAC 57.154 29.630 0.00 0.00 0.00 3.18
27 28 9.453572 TCATAGAAGTGATTGCTTTTAACATCT 57.546 29.630 0.00 0.00 0.00 2.90
35 36 9.282569 GGATAGAATCATAGAAGTGATTGCTTT 57.717 33.333 6.84 1.24 46.02 3.51
36 37 8.435187 TGGATAGAATCATAGAAGTGATTGCTT 58.565 33.333 6.84 0.00 46.02 3.91
37 38 7.877097 GTGGATAGAATCATAGAAGTGATTGCT 59.123 37.037 6.84 6.77 46.02 3.91
38 39 7.877097 AGTGGATAGAATCATAGAAGTGATTGC 59.123 37.037 6.84 0.60 46.02 3.56
39 40 9.421806 GAGTGGATAGAATCATAGAAGTGATTG 57.578 37.037 6.84 0.00 46.02 2.67
41 42 7.732140 TGGAGTGGATAGAATCATAGAAGTGAT 59.268 37.037 0.00 0.00 40.44 3.06
42 43 7.069344 TGGAGTGGATAGAATCATAGAAGTGA 58.931 38.462 0.00 0.00 0.00 3.41
43 44 7.295322 TGGAGTGGATAGAATCATAGAAGTG 57.705 40.000 0.00 0.00 0.00 3.16
44 45 7.202047 GGTTGGAGTGGATAGAATCATAGAAGT 60.202 40.741 0.00 0.00 0.00 3.01
45 46 7.158021 GGTTGGAGTGGATAGAATCATAGAAG 58.842 42.308 0.00 0.00 0.00 2.85
46 47 6.615316 TGGTTGGAGTGGATAGAATCATAGAA 59.385 38.462 0.00 0.00 0.00 2.10
47 48 6.143206 TGGTTGGAGTGGATAGAATCATAGA 58.857 40.000 0.00 0.00 0.00 1.98
48 49 6.425210 TGGTTGGAGTGGATAGAATCATAG 57.575 41.667 0.00 0.00 0.00 2.23
49 50 7.734865 ACTATGGTTGGAGTGGATAGAATCATA 59.265 37.037 0.00 0.00 0.00 2.15
50 51 5.919348 ATGGTTGGAGTGGATAGAATCAT 57.081 39.130 0.00 0.00 0.00 2.45
51 52 5.905331 ACTATGGTTGGAGTGGATAGAATCA 59.095 40.000 0.00 0.00 0.00 2.57
52 53 6.226787 CACTATGGTTGGAGTGGATAGAATC 58.773 44.000 0.00 0.00 39.55 2.52
53 54 6.179906 CACTATGGTTGGAGTGGATAGAAT 57.820 41.667 0.00 0.00 39.55 2.40
54 55 5.614324 CACTATGGTTGGAGTGGATAGAA 57.386 43.478 0.00 0.00 39.55 2.10
61 62 3.104512 TCTACCCACTATGGTTGGAGTG 58.895 50.000 6.31 0.00 42.29 3.51
62 63 3.105283 GTCTACCCACTATGGTTGGAGT 58.895 50.000 6.31 2.77 39.91 3.85
63 64 2.434702 GGTCTACCCACTATGGTTGGAG 59.565 54.545 6.31 0.28 39.91 3.86
64 65 2.225675 TGGTCTACCCACTATGGTTGGA 60.226 50.000 6.31 0.00 38.72 3.53
65 66 2.193127 TGGTCTACCCACTATGGTTGG 58.807 52.381 0.00 0.00 38.72 3.77
66 67 3.517901 TCTTGGTCTACCCACTATGGTTG 59.482 47.826 0.00 0.00 45.19 3.77
67 68 3.798515 TCTTGGTCTACCCACTATGGTT 58.201 45.455 0.00 0.00 45.19 3.67
68 69 3.484953 TCTTGGTCTACCCACTATGGT 57.515 47.619 0.00 0.00 45.19 3.55
69 70 6.688073 AATATCTTGGTCTACCCACTATGG 57.312 41.667 0.00 0.00 45.19 2.74
70 71 7.509546 ACAAATATCTTGGTCTACCCACTATG 58.490 38.462 0.00 0.00 45.19 2.23
71 72 7.569111 AGACAAATATCTTGGTCTACCCACTAT 59.431 37.037 0.00 0.00 42.72 2.12
72 73 6.901300 AGACAAATATCTTGGTCTACCCACTA 59.099 38.462 0.00 0.00 42.72 2.74
73 74 5.726793 AGACAAATATCTTGGTCTACCCACT 59.273 40.000 0.00 0.00 42.72 4.00
74 75 5.990668 AGACAAATATCTTGGTCTACCCAC 58.009 41.667 0.00 0.00 42.72 4.61
75 76 6.636454 AAGACAAATATCTTGGTCTACCCA 57.364 37.500 1.52 0.00 43.56 4.51
76 77 6.258068 CGAAAGACAAATATCTTGGTCTACCC 59.742 42.308 1.52 0.00 43.56 3.69
77 78 6.238130 GCGAAAGACAAATATCTTGGTCTACC 60.238 42.308 1.52 0.00 43.56 3.18
78 79 6.238130 GGCGAAAGACAAATATCTTGGTCTAC 60.238 42.308 1.52 0.10 43.56 2.59
79 80 5.815740 GGCGAAAGACAAATATCTTGGTCTA 59.184 40.000 1.52 0.00 43.56 2.59
80 81 4.636206 GGCGAAAGACAAATATCTTGGTCT 59.364 41.667 0.00 0.00 45.81 3.85
81 82 4.201920 GGGCGAAAGACAAATATCTTGGTC 60.202 45.833 0.00 0.00 45.40 4.02
82 83 3.694566 GGGCGAAAGACAAATATCTTGGT 59.305 43.478 0.00 0.00 45.40 3.67
83 84 3.947834 AGGGCGAAAGACAAATATCTTGG 59.052 43.478 0.00 0.00 45.40 3.61
84 85 4.260375 CGAGGGCGAAAGACAAATATCTTG 60.260 45.833 0.00 0.00 45.40 3.02
85 86 3.871594 CGAGGGCGAAAGACAAATATCTT 59.128 43.478 0.00 0.00 45.40 2.40
86 87 3.458189 CGAGGGCGAAAGACAAATATCT 58.542 45.455 0.00 0.00 45.40 1.98
87 88 2.032808 GCGAGGGCGAAAGACAAATATC 60.033 50.000 0.00 0.00 45.40 1.63
88 89 1.940613 GCGAGGGCGAAAGACAAATAT 59.059 47.619 0.00 0.00 45.40 1.28
89 90 1.066430 AGCGAGGGCGAAAGACAAATA 60.066 47.619 0.00 0.00 45.40 1.40
90 91 0.321653 AGCGAGGGCGAAAGACAAAT 60.322 50.000 0.00 0.00 45.40 2.32
91 92 0.534203 AAGCGAGGGCGAAAGACAAA 60.534 50.000 0.00 0.00 45.40 2.83
92 93 0.534203 AAAGCGAGGGCGAAAGACAA 60.534 50.000 0.00 0.00 45.40 3.18
93 94 1.070786 AAAGCGAGGGCGAAAGACA 59.929 52.632 0.00 0.00 45.40 3.41
94 95 1.228657 ACAAAGCGAGGGCGAAAGAC 61.229 55.000 0.00 0.00 46.35 3.01
95 96 0.319083 TACAAAGCGAGGGCGAAAGA 59.681 50.000 0.00 0.00 46.35 2.52
96 97 0.442699 GTACAAAGCGAGGGCGAAAG 59.557 55.000 0.00 0.00 46.35 2.62
97 98 1.286354 CGTACAAAGCGAGGGCGAAA 61.286 55.000 0.00 0.00 46.35 3.46
98 99 1.735198 CGTACAAAGCGAGGGCGAA 60.735 57.895 0.00 0.00 46.35 4.70
99 100 2.126228 CGTACAAAGCGAGGGCGA 60.126 61.111 0.00 0.00 46.35 5.54
100 101 2.431942 ACGTACAAAGCGAGGGCG 60.432 61.111 0.00 0.00 46.35 6.13
101 102 2.098831 GGACGTACAAAGCGAGGGC 61.099 63.158 0.00 0.00 40.37 5.19
102 103 1.447314 GGGACGTACAAAGCGAGGG 60.447 63.158 0.00 0.00 0.00 4.30
103 104 1.447314 GGGGACGTACAAAGCGAGG 60.447 63.158 0.00 0.00 0.00 4.63
104 105 0.458025 GAGGGGACGTACAAAGCGAG 60.458 60.000 0.00 0.00 0.00 5.03
105 106 1.588082 GAGGGGACGTACAAAGCGA 59.412 57.895 0.00 0.00 0.00 4.93
106 107 1.447314 GGAGGGGACGTACAAAGCG 60.447 63.158 0.00 0.00 0.00 4.68
107 108 0.108281 GAGGAGGGGACGTACAAAGC 60.108 60.000 0.00 0.00 0.00 3.51
108 109 0.535797 GGAGGAGGGGACGTACAAAG 59.464 60.000 0.00 0.00 0.00 2.77
109 110 0.115745 AGGAGGAGGGGACGTACAAA 59.884 55.000 0.00 0.00 0.00 2.83
110 111 0.324091 GAGGAGGAGGGGACGTACAA 60.324 60.000 0.00 0.00 0.00 2.41
111 112 1.305623 GAGGAGGAGGGGACGTACA 59.694 63.158 0.00 0.00 0.00 2.90
112 113 1.455402 GGAGGAGGAGGGGACGTAC 60.455 68.421 0.00 0.00 0.00 3.67
113 114 1.621822 AGGAGGAGGAGGGGACGTA 60.622 63.158 0.00 0.00 0.00 3.57
114 115 2.947785 AGGAGGAGGAGGGGACGT 60.948 66.667 0.00 0.00 0.00 4.34
115 116 2.123640 GAGGAGGAGGAGGGGACG 60.124 72.222 0.00 0.00 0.00 4.79
116 117 2.014033 ATCGAGGAGGAGGAGGGGAC 62.014 65.000 0.00 0.00 0.00 4.46
117 118 1.297409 AATCGAGGAGGAGGAGGGGA 61.297 60.000 0.00 0.00 0.00 4.81
118 119 0.399233 AAATCGAGGAGGAGGAGGGG 60.399 60.000 0.00 0.00 0.00 4.79
119 120 1.044611 GAAATCGAGGAGGAGGAGGG 58.955 60.000 0.00 0.00 0.00 4.30
120 121 2.080654 AGAAATCGAGGAGGAGGAGG 57.919 55.000 0.00 0.00 0.00 4.30
121 122 4.161377 AGAAAAGAAATCGAGGAGGAGGAG 59.839 45.833 0.00 0.00 0.00 3.69
122 123 4.081420 CAGAAAAGAAATCGAGGAGGAGGA 60.081 45.833 0.00 0.00 0.00 3.71
123 124 4.187694 CAGAAAAGAAATCGAGGAGGAGG 58.812 47.826 0.00 0.00 0.00 4.30
124 125 3.620821 GCAGAAAAGAAATCGAGGAGGAG 59.379 47.826 0.00 0.00 0.00 3.69
125 126 3.600388 GCAGAAAAGAAATCGAGGAGGA 58.400 45.455 0.00 0.00 0.00 3.71
126 127 2.680339 GGCAGAAAAGAAATCGAGGAGG 59.320 50.000 0.00 0.00 0.00 4.30
127 128 3.604582 AGGCAGAAAAGAAATCGAGGAG 58.395 45.455 0.00 0.00 0.00 3.69
128 129 3.261897 AGAGGCAGAAAAGAAATCGAGGA 59.738 43.478 0.00 0.00 0.00 3.71
129 130 3.604582 AGAGGCAGAAAAGAAATCGAGG 58.395 45.455 0.00 0.00 0.00 4.63
130 131 4.201666 CGAAGAGGCAGAAAAGAAATCGAG 60.202 45.833 0.00 0.00 0.00 4.04
131 132 3.679980 CGAAGAGGCAGAAAAGAAATCGA 59.320 43.478 0.00 0.00 0.00 3.59
132 133 3.181516 CCGAAGAGGCAGAAAAGAAATCG 60.182 47.826 0.00 0.00 0.00 3.34
133 134 3.753797 ACCGAAGAGGCAGAAAAGAAATC 59.246 43.478 0.00 0.00 46.52 2.17
134 135 3.753797 GACCGAAGAGGCAGAAAAGAAAT 59.246 43.478 0.00 0.00 46.52 2.17
135 136 3.139077 GACCGAAGAGGCAGAAAAGAAA 58.861 45.455 0.00 0.00 46.52 2.52
136 137 2.368875 AGACCGAAGAGGCAGAAAAGAA 59.631 45.455 0.00 0.00 46.52 2.52
137 138 1.971357 AGACCGAAGAGGCAGAAAAGA 59.029 47.619 0.00 0.00 46.52 2.52
138 139 2.464157 AGACCGAAGAGGCAGAAAAG 57.536 50.000 0.00 0.00 46.52 2.27
139 140 2.368875 AGAAGACCGAAGAGGCAGAAAA 59.631 45.455 0.00 0.00 46.52 2.29
140 141 1.971357 AGAAGACCGAAGAGGCAGAAA 59.029 47.619 0.00 0.00 46.52 2.52
141 142 1.546476 GAGAAGACCGAAGAGGCAGAA 59.454 52.381 0.00 0.00 46.52 3.02
142 143 1.178276 GAGAAGACCGAAGAGGCAGA 58.822 55.000 0.00 0.00 46.52 4.26
143 144 0.174617 GGAGAAGACCGAAGAGGCAG 59.825 60.000 0.00 0.00 46.52 4.85
144 145 1.258445 GGGAGAAGACCGAAGAGGCA 61.258 60.000 0.00 0.00 46.52 4.75
145 146 1.518302 GGGAGAAGACCGAAGAGGC 59.482 63.158 0.00 0.00 46.52 4.70
153 154 2.046217 GGTTGCGGGGAGAAGACC 60.046 66.667 0.00 0.00 0.00 3.85
154 155 2.046217 GGGTTGCGGGGAGAAGAC 60.046 66.667 0.00 0.00 0.00 3.01
155 156 1.497309 ATTGGGTTGCGGGGAGAAGA 61.497 55.000 0.00 0.00 0.00 2.87
156 157 1.000896 ATTGGGTTGCGGGGAGAAG 60.001 57.895 0.00 0.00 0.00 2.85
157 158 1.001393 GATTGGGTTGCGGGGAGAA 60.001 57.895 0.00 0.00 0.00 2.87
158 159 1.910580 GAGATTGGGTTGCGGGGAGA 61.911 60.000 0.00 0.00 0.00 3.71
159 160 1.452108 GAGATTGGGTTGCGGGGAG 60.452 63.158 0.00 0.00 0.00 4.30
160 161 1.497309 AAGAGATTGGGTTGCGGGGA 61.497 55.000 0.00 0.00 0.00 4.81
161 162 0.254747 TAAGAGATTGGGTTGCGGGG 59.745 55.000 0.00 0.00 0.00 5.73
162 163 1.949525 CATAAGAGATTGGGTTGCGGG 59.050 52.381 0.00 0.00 0.00 6.13
163 164 2.874701 CTCATAAGAGATTGGGTTGCGG 59.125 50.000 0.00 0.00 44.98 5.69
164 165 2.874701 CCTCATAAGAGATTGGGTTGCG 59.125 50.000 0.00 0.00 44.98 4.85
165 166 2.620585 GCCTCATAAGAGATTGGGTTGC 59.379 50.000 0.00 0.00 44.98 4.17
166 167 3.217626 GGCCTCATAAGAGATTGGGTTG 58.782 50.000 0.00 0.00 44.98 3.77
167 168 2.158755 CGGCCTCATAAGAGATTGGGTT 60.159 50.000 0.00 0.00 44.98 4.11
168 169 1.417890 CGGCCTCATAAGAGATTGGGT 59.582 52.381 0.00 0.00 44.98 4.51
169 170 1.271054 CCGGCCTCATAAGAGATTGGG 60.271 57.143 0.00 0.00 44.98 4.12
170 171 1.879796 GCCGGCCTCATAAGAGATTGG 60.880 57.143 18.11 0.00 44.98 3.16
171 172 1.202687 TGCCGGCCTCATAAGAGATTG 60.203 52.381 26.77 0.00 44.98 2.67
172 173 1.071385 CTGCCGGCCTCATAAGAGATT 59.929 52.381 26.77 0.00 44.98 2.40
173 174 0.683973 CTGCCGGCCTCATAAGAGAT 59.316 55.000 26.77 0.00 44.98 2.75
174 175 0.397114 TCTGCCGGCCTCATAAGAGA 60.397 55.000 26.77 14.70 44.98 3.10
175 176 0.683973 ATCTGCCGGCCTCATAAGAG 59.316 55.000 26.77 12.25 41.72 2.85
176 177 1.618837 GTATCTGCCGGCCTCATAAGA 59.381 52.381 26.77 19.36 0.00 2.10
191 192 2.548067 GCCGATGGGATTCGTTGTATCT 60.548 50.000 0.00 0.00 37.42 1.98
194 195 0.528901 CGCCGATGGGATTCGTTGTA 60.529 55.000 0.00 0.00 37.42 2.41
235 236 2.513897 GAGGGTGGCGGGATTTCG 60.514 66.667 0.00 0.00 0.00 3.46
279 280 1.365633 GCTGGACATAGGCGAGAGG 59.634 63.158 0.00 0.00 0.00 3.69
373 374 2.760799 ATAGTACCACCGGCGGCA 60.761 61.111 28.71 5.86 0.00 5.69
402 403 2.829043 GAAAATTTGGGTCCGCCGCC 62.829 60.000 0.00 0.00 34.97 6.13
625 633 1.002868 CCATCATGAGGCGGATCCC 60.003 63.158 6.06 0.00 34.51 3.85
653 661 4.501571 GCTAGATTGATCAAAGCGTCCCTA 60.502 45.833 13.09 5.05 31.50 3.53
747 764 3.922171 AGAGGTCAAATGACAGGATCC 57.078 47.619 14.93 2.48 46.47 3.36
834 857 7.039082 ACCAAGTACAAACCCGTTTATAGTCTA 60.039 37.037 0.00 0.00 0.00 2.59
989 1015 6.131961 CCATTCCTCCTCATAACTTTCCAAT 58.868 40.000 0.00 0.00 0.00 3.16
990 1016 5.509498 CCATTCCTCCTCATAACTTTCCAA 58.491 41.667 0.00 0.00 0.00 3.53
1196 1223 3.640498 CCCTCTGTGATCTCTAGCAATCA 59.360 47.826 0.00 3.53 0.00 2.57
1222 1249 5.221722 ACTCCTTGCTGACTGACAAGAATAA 60.222 40.000 13.90 0.00 44.89 1.40
1334 1363 3.524095 TGTTGTCCACCTCCAATTGAT 57.476 42.857 7.12 0.00 0.00 2.57
1338 1367 2.586425 CACTTGTTGTCCACCTCCAAT 58.414 47.619 0.00 0.00 0.00 3.16
1351 1380 3.009473 AGTGCATCTGGTATCCACTTGTT 59.991 43.478 0.00 0.00 33.29 2.83
1352 1381 2.573462 AGTGCATCTGGTATCCACTTGT 59.427 45.455 0.00 0.00 33.29 3.16
1363 1426 3.924686 GCATTTTTCTTCAGTGCATCTGG 59.075 43.478 13.87 2.70 43.76 3.86
1481 1583 0.679505 ACGCACTCTGGCTTCAACTA 59.320 50.000 0.00 0.00 0.00 2.24
1686 1788 9.028185 GGTTCATCTATTCAATCTGCAAAAATC 57.972 33.333 0.00 0.00 0.00 2.17
1743 1845 4.142182 CGAAACGTGATACTTTAGGGGGTA 60.142 45.833 0.00 0.00 0.00 3.69
1833 1939 2.617021 CGCTTAAAACAGGCTTAGGGGA 60.617 50.000 0.00 0.00 0.00 4.81
2038 4070 2.356278 GGCCAGCATCACCAGGAA 59.644 61.111 0.00 0.00 0.00 3.36
2349 6094 2.708216 TCAACTCAACCAGCTTGACA 57.292 45.000 0.00 0.00 33.65 3.58
2364 6109 5.582269 TGCATGAACTAGCTAACTGATCAAC 59.418 40.000 0.00 0.00 0.00 3.18
2433 6181 7.535599 GCGAGGTTTATAGGTTAGATACGTAAC 59.464 40.741 0.00 0.00 31.46 2.50
2435 6183 6.936900 AGCGAGGTTTATAGGTTAGATACGTA 59.063 38.462 0.00 0.00 0.00 3.57
2436 6184 5.767168 AGCGAGGTTTATAGGTTAGATACGT 59.233 40.000 0.00 0.00 0.00 3.57
2437 6185 6.251655 AGCGAGGTTTATAGGTTAGATACG 57.748 41.667 0.00 0.00 0.00 3.06
2438 6186 8.558973 TCTAGCGAGGTTTATAGGTTAGATAC 57.441 38.462 0.00 0.00 0.00 2.24
2440 6188 7.232910 ACTCTAGCGAGGTTTATAGGTTAGAT 58.767 38.462 0.00 0.00 41.71 1.98
2441 6189 6.599445 ACTCTAGCGAGGTTTATAGGTTAGA 58.401 40.000 0.00 0.00 41.71 2.10
2442 6190 6.880942 ACTCTAGCGAGGTTTATAGGTTAG 57.119 41.667 0.00 0.00 41.71 2.34
2443 6191 6.712547 GGTACTCTAGCGAGGTTTATAGGTTA 59.287 42.308 0.00 0.00 41.71 2.85
2444 6192 5.534278 GGTACTCTAGCGAGGTTTATAGGTT 59.466 44.000 0.00 0.00 41.71 3.50
2445 6193 5.069318 GGTACTCTAGCGAGGTTTATAGGT 58.931 45.833 0.00 0.00 41.71 3.08
2446 6194 4.458642 GGGTACTCTAGCGAGGTTTATAGG 59.541 50.000 0.00 0.00 41.71 2.57
2447 6195 4.153835 CGGGTACTCTAGCGAGGTTTATAG 59.846 50.000 0.00 0.00 41.71 1.31
2448 6196 4.067896 CGGGTACTCTAGCGAGGTTTATA 58.932 47.826 0.00 0.00 41.71 0.98
2449 6197 2.883386 CGGGTACTCTAGCGAGGTTTAT 59.117 50.000 0.00 0.00 41.71 1.40
2450 6198 2.292267 CGGGTACTCTAGCGAGGTTTA 58.708 52.381 0.00 0.00 41.71 2.01
2451 6199 1.101331 CGGGTACTCTAGCGAGGTTT 58.899 55.000 0.00 0.00 41.71 3.27
2452 6200 1.382692 GCGGGTACTCTAGCGAGGTT 61.383 60.000 0.00 0.00 41.71 3.50
2453 6201 1.823041 GCGGGTACTCTAGCGAGGT 60.823 63.158 0.00 0.00 41.71 3.85
2454 6202 3.032339 GCGGGTACTCTAGCGAGG 58.968 66.667 0.00 0.00 41.71 4.63
2458 6206 1.020437 AGTTACGCGGGTACTCTAGC 58.980 55.000 12.47 0.00 0.00 3.42
2459 6207 1.332997 CCAGTTACGCGGGTACTCTAG 59.667 57.143 12.47 3.82 0.00 2.43
2460 6208 1.065491 TCCAGTTACGCGGGTACTCTA 60.065 52.381 12.47 0.00 33.92 2.43
2461 6209 0.322816 TCCAGTTACGCGGGTACTCT 60.323 55.000 12.47 10.72 33.92 3.24
2462 6210 0.100146 CTCCAGTTACGCGGGTACTC 59.900 60.000 12.47 8.64 33.92 2.59
2463 6211 1.318158 CCTCCAGTTACGCGGGTACT 61.318 60.000 12.47 7.69 33.92 2.73
2464 6212 1.140375 CCTCCAGTTACGCGGGTAC 59.860 63.158 12.47 5.13 33.92 3.34
2465 6213 2.713967 GCCTCCAGTTACGCGGGTA 61.714 63.158 12.47 8.44 33.92 3.69
2466 6214 4.078516 GCCTCCAGTTACGCGGGT 62.079 66.667 12.47 10.91 33.92 5.28
2467 6215 3.385749 ATGCCTCCAGTTACGCGGG 62.386 63.158 12.47 0.43 0.00 6.13
2468 6216 1.883084 GATGCCTCCAGTTACGCGG 60.883 63.158 12.47 0.00 0.00 6.46
2469 6217 2.230940 CGATGCCTCCAGTTACGCG 61.231 63.158 3.53 3.53 0.00 6.01
2470 6218 2.526120 GCGATGCCTCCAGTTACGC 61.526 63.158 0.00 0.00 38.03 4.42
2471 6219 0.872021 GAGCGATGCCTCCAGTTACG 60.872 60.000 0.00 0.00 0.00 3.18
2472 6220 0.872021 CGAGCGATGCCTCCAGTTAC 60.872 60.000 0.00 0.00 0.00 2.50
2473 6221 1.437573 CGAGCGATGCCTCCAGTTA 59.562 57.895 0.00 0.00 0.00 2.24
2474 6222 2.185350 CGAGCGATGCCTCCAGTT 59.815 61.111 0.00 0.00 0.00 3.16
2475 6223 4.521062 GCGAGCGATGCCTCCAGT 62.521 66.667 0.00 0.00 0.00 4.00
2488 6236 2.008697 CAAAAACGTTGGGCGCGAG 61.009 57.895 12.10 0.00 46.11 5.03
2489 6237 2.024871 CAAAAACGTTGGGCGCGA 59.975 55.556 12.10 0.00 46.11 5.87
2490 6238 2.024871 TCAAAAACGTTGGGCGCG 59.975 55.556 0.00 0.00 46.11 6.86
2491 6239 1.947146 GGTCAAAAACGTTGGGCGC 60.947 57.895 0.00 0.00 46.11 6.53
2493 6241 1.947146 GCGGTCAAAAACGTTGGGC 60.947 57.895 0.00 0.00 0.00 5.36
2494 6242 0.317519 GAGCGGTCAAAAACGTTGGG 60.318 55.000 10.30 0.00 0.00 4.12
2495 6243 0.656205 CGAGCGGTCAAAAACGTTGG 60.656 55.000 15.89 0.00 0.00 3.77
2496 6244 0.302288 TCGAGCGGTCAAAAACGTTG 59.698 50.000 15.89 0.00 0.00 4.10
2497 6245 1.223187 ATCGAGCGGTCAAAAACGTT 58.777 45.000 15.89 0.00 0.00 3.99
2498 6246 1.070175 CAATCGAGCGGTCAAAAACGT 60.070 47.619 15.89 0.00 0.00 3.99
2499 6247 1.193650 TCAATCGAGCGGTCAAAAACG 59.806 47.619 15.89 0.00 0.00 3.60
2500 6248 2.961522 TCAATCGAGCGGTCAAAAAC 57.038 45.000 15.89 0.00 0.00 2.43
2501 6249 4.497473 AATTCAATCGAGCGGTCAAAAA 57.503 36.364 15.89 1.69 0.00 1.94
2502 6250 4.452795 TGTAATTCAATCGAGCGGTCAAAA 59.547 37.500 15.89 0.00 0.00 2.44
2503 6251 3.997681 TGTAATTCAATCGAGCGGTCAAA 59.002 39.130 15.89 2.00 0.00 2.69
2504 6252 3.591023 TGTAATTCAATCGAGCGGTCAA 58.409 40.909 15.89 0.00 0.00 3.18
2505 6253 3.239587 TGTAATTCAATCGAGCGGTCA 57.760 42.857 15.89 2.26 0.00 4.02
2506 6254 3.369756 TGTTGTAATTCAATCGAGCGGTC 59.630 43.478 4.06 4.06 38.38 4.79
2507 6255 3.331150 TGTTGTAATTCAATCGAGCGGT 58.669 40.909 0.00 0.00 38.38 5.68
2508 6256 3.370978 ACTGTTGTAATTCAATCGAGCGG 59.629 43.478 0.00 0.00 38.38 5.52
2509 6257 4.091365 TCACTGTTGTAATTCAATCGAGCG 59.909 41.667 0.00 0.00 38.38 5.03
2510 6258 5.530519 TCACTGTTGTAATTCAATCGAGC 57.469 39.130 0.00 0.00 38.38 5.03
2511 6259 8.955061 AAAATCACTGTTGTAATTCAATCGAG 57.045 30.769 0.00 0.00 38.38 4.04
2549 6297 2.668550 GTGGACGGTTGACCAGCC 60.669 66.667 0.51 1.53 40.62 4.85
2550 6298 1.961277 CAGTGGACGGTTGACCAGC 60.961 63.158 0.51 0.00 40.62 4.85
2551 6299 0.179056 AACAGTGGACGGTTGACCAG 60.179 55.000 0.51 0.00 40.62 4.00
2552 6300 0.253610 AAACAGTGGACGGTTGACCA 59.746 50.000 0.51 0.00 37.60 4.02
2553 6301 1.385528 AAAACAGTGGACGGTTGACC 58.614 50.000 0.00 0.00 34.62 4.02
2554 6302 2.420722 TGAAAAACAGTGGACGGTTGAC 59.579 45.455 0.00 0.00 34.62 3.18
2555 6303 2.420722 GTGAAAAACAGTGGACGGTTGA 59.579 45.455 0.00 0.00 34.62 3.18
2556 6304 2.789779 CGTGAAAAACAGTGGACGGTTG 60.790 50.000 0.00 0.00 34.62 3.77
2557 6305 1.399089 CGTGAAAAACAGTGGACGGTT 59.601 47.619 0.00 0.00 35.85 4.44
2558 6306 1.011333 CGTGAAAAACAGTGGACGGT 58.989 50.000 0.00 0.00 0.00 4.83
2559 6307 1.011333 ACGTGAAAAACAGTGGACGG 58.989 50.000 0.00 0.00 0.00 4.79
2560 6308 2.817538 AACGTGAAAAACAGTGGACG 57.182 45.000 0.00 0.00 0.00 4.79
2561 6309 5.735892 GTCTTAAACGTGAAAAACAGTGGAC 59.264 40.000 0.00 0.00 0.00 4.02
2562 6310 5.163733 GGTCTTAAACGTGAAAAACAGTGGA 60.164 40.000 0.00 0.00 0.00 4.02
2563 6311 5.032220 GGTCTTAAACGTGAAAAACAGTGG 58.968 41.667 0.00 0.00 0.00 4.00
2564 6312 4.726704 CGGTCTTAAACGTGAAAAACAGTG 59.273 41.667 0.00 0.00 0.00 3.66
2565 6313 4.392754 ACGGTCTTAAACGTGAAAAACAGT 59.607 37.500 0.00 0.00 42.39 3.55
2566 6314 4.900664 ACGGTCTTAAACGTGAAAAACAG 58.099 39.130 0.00 0.00 42.39 3.16
2567 6315 4.943142 ACGGTCTTAAACGTGAAAAACA 57.057 36.364 0.00 0.00 42.39 2.83
2575 6323 1.682854 TCCTGACACGGTCTTAAACGT 59.317 47.619 5.77 0.00 45.25 3.99
2576 6324 2.030540 TCTCCTGACACGGTCTTAAACG 60.031 50.000 5.77 0.00 33.15 3.60
2577 6325 3.255149 TCTCTCCTGACACGGTCTTAAAC 59.745 47.826 5.77 0.00 33.15 2.01
2578 6326 3.493334 TCTCTCCTGACACGGTCTTAAA 58.507 45.455 5.77 0.00 33.15 1.52
2579 6327 3.150458 TCTCTCCTGACACGGTCTTAA 57.850 47.619 5.77 0.00 33.15 1.85
2580 6328 2.873094 TCTCTCCTGACACGGTCTTA 57.127 50.000 5.77 0.00 33.15 2.10
2581 6329 1.996798 TTCTCTCCTGACACGGTCTT 58.003 50.000 5.77 0.00 33.15 3.01
2582 6330 1.821753 CATTCTCTCCTGACACGGTCT 59.178 52.381 5.77 0.00 33.15 3.85
2583 6331 1.819288 TCATTCTCTCCTGACACGGTC 59.181 52.381 0.00 0.00 0.00 4.79
2584 6332 1.546476 GTCATTCTCTCCTGACACGGT 59.454 52.381 0.00 0.00 41.13 4.83
2585 6333 1.468224 CGTCATTCTCTCCTGACACGG 60.468 57.143 3.87 0.00 41.46 4.94
2586 6334 1.468224 CCGTCATTCTCTCCTGACACG 60.468 57.143 3.87 0.00 41.46 4.49
2587 6335 1.134965 CCCGTCATTCTCTCCTGACAC 60.135 57.143 3.87 0.00 41.46 3.67
2588 6336 1.186200 CCCGTCATTCTCTCCTGACA 58.814 55.000 3.87 0.00 41.46 3.58
2589 6337 1.134965 CACCCGTCATTCTCTCCTGAC 60.135 57.143 0.00 0.00 38.69 3.51
2590 6338 1.186200 CACCCGTCATTCTCTCCTGA 58.814 55.000 0.00 0.00 0.00 3.86
2591 6339 0.176680 CCACCCGTCATTCTCTCCTG 59.823 60.000 0.00 0.00 0.00 3.86
2592 6340 0.978146 CCCACCCGTCATTCTCTCCT 60.978 60.000 0.00 0.00 0.00 3.69
2593 6341 1.522569 CCCACCCGTCATTCTCTCC 59.477 63.158 0.00 0.00 0.00 3.71
2594 6342 1.265454 ACCCCACCCGTCATTCTCTC 61.265 60.000 0.00 0.00 0.00 3.20
2595 6343 1.229529 ACCCCACCCGTCATTCTCT 60.230 57.895 0.00 0.00 0.00 3.10
2596 6344 1.221021 GACCCCACCCGTCATTCTC 59.779 63.158 0.00 0.00 0.00 2.87
2597 6345 0.914417 ATGACCCCACCCGTCATTCT 60.914 55.000 0.00 0.00 46.36 2.40
2598 6346 0.748005 CATGACCCCACCCGTCATTC 60.748 60.000 0.80 0.00 46.36 2.67
2599 6347 1.204786 TCATGACCCCACCCGTCATT 61.205 55.000 0.80 0.00 46.36 2.57
2601 6349 2.203862 TCATGACCCCACCCGTCA 60.204 61.111 0.00 0.00 44.00 4.35
2602 6350 2.584608 CTCATGACCCCACCCGTC 59.415 66.667 0.00 0.00 0.00 4.79
2603 6351 3.717294 GCTCATGACCCCACCCGT 61.717 66.667 0.00 0.00 0.00 5.28
2604 6352 4.489771 GGCTCATGACCCCACCCG 62.490 72.222 0.00 0.00 0.00 5.28
2605 6353 2.228841 ATTGGCTCATGACCCCACCC 62.229 60.000 9.35 0.00 0.00 4.61
2606 6354 1.039233 CATTGGCTCATGACCCCACC 61.039 60.000 9.35 0.00 0.00 4.61
2607 6355 1.039233 CCATTGGCTCATGACCCCAC 61.039 60.000 9.35 0.00 0.00 4.61
2608 6356 1.307309 CCATTGGCTCATGACCCCA 59.693 57.895 4.55 5.50 0.00 4.96
2609 6357 1.456331 CCCATTGGCTCATGACCCC 60.456 63.158 4.55 2.88 0.00 4.95
2610 6358 1.456331 CCCCATTGGCTCATGACCC 60.456 63.158 0.00 0.00 0.00 4.46
2611 6359 1.456331 CCCCCATTGGCTCATGACC 60.456 63.158 0.00 0.00 0.00 4.02
2612 6360 4.265206 CCCCCATTGGCTCATGAC 57.735 61.111 0.00 0.00 0.00 3.06
2619 6367 4.478796 TGGATGGCCCCCATTGGC 62.479 66.667 9.69 0.00 45.26 4.52
2620 6368 2.123164 CTGGATGGCCCCCATTGG 60.123 66.667 13.65 0.00 45.26 3.16
2621 6369 2.841044 GCTGGATGGCCCCCATTG 60.841 66.667 13.65 5.50 45.26 2.82
2622 6370 3.357952 TGCTGGATGGCCCCCATT 61.358 61.111 13.65 0.00 45.26 3.16
2625 6373 4.201122 CTCTGCTGGATGGCCCCC 62.201 72.222 0.00 1.46 0.00 5.40
2626 6374 4.201122 CCTCTGCTGGATGGCCCC 62.201 72.222 0.00 0.00 0.00 5.80
2627 6375 4.201122 CCCTCTGCTGGATGGCCC 62.201 72.222 0.00 0.00 0.00 5.80
2628 6376 3.092511 TCCCTCTGCTGGATGGCC 61.093 66.667 0.00 0.00 31.04 5.36
2629 6377 2.509916 CTCCCTCTGCTGGATGGC 59.490 66.667 0.00 0.00 31.04 4.40
2630 6378 2.450320 CCCTCCCTCTGCTGGATGG 61.450 68.421 0.00 0.00 32.35 3.51
2631 6379 1.277580 AACCCTCCCTCTGCTGGATG 61.278 60.000 0.00 0.00 0.00 3.51
2632 6380 0.551131 AAACCCTCCCTCTGCTGGAT 60.551 55.000 0.00 0.00 0.00 3.41
2633 6381 1.151810 AAACCCTCCCTCTGCTGGA 60.152 57.895 0.00 0.00 0.00 3.86
2634 6382 1.301293 GAAACCCTCCCTCTGCTGG 59.699 63.158 0.00 0.00 0.00 4.85
2635 6383 1.204113 AGGAAACCCTCCCTCTGCTG 61.204 60.000 0.00 0.00 46.81 4.41
2636 6384 1.162085 AGGAAACCCTCCCTCTGCT 59.838 57.895 0.00 0.00 46.81 4.24
2637 6385 1.301293 CAGGAAACCCTCCCTCTGC 59.699 63.158 0.00 0.00 46.81 4.26
2638 6386 0.547712 TCCAGGAAACCCTCCCTCTG 60.548 60.000 0.00 0.00 46.81 3.35
2639 6387 0.252927 CTCCAGGAAACCCTCCCTCT 60.253 60.000 0.00 0.00 46.81 3.69
2640 6388 1.916206 GCTCCAGGAAACCCTCCCTC 61.916 65.000 0.00 0.00 46.81 4.30
2641 6389 1.925972 GCTCCAGGAAACCCTCCCT 60.926 63.158 0.00 0.00 46.81 4.20
2642 6390 2.677848 GCTCCAGGAAACCCTCCC 59.322 66.667 0.00 0.00 46.81 4.30
2643 6391 2.677848 GGCTCCAGGAAACCCTCC 59.322 66.667 0.00 0.00 45.81 4.30
2644 6392 2.231380 TGGGCTCCAGGAAACCCTC 61.231 63.158 22.77 3.86 43.25 4.30
2645 6393 2.121506 TGGGCTCCAGGAAACCCT 60.122 61.111 22.77 0.00 43.25 4.34
2654 6402 1.002069 AATCATTGACCTGGGCTCCA 58.998 50.000 0.00 0.00 0.00 3.86
2655 6403 1.396653 CAATCATTGACCTGGGCTCC 58.603 55.000 0.00 0.00 0.00 4.70
2656 6404 1.396653 CCAATCATTGACCTGGGCTC 58.603 55.000 0.00 0.00 0.00 4.70
2657 6405 0.685458 GCCAATCATTGACCTGGGCT 60.685 55.000 15.18 0.00 37.00 5.19
2658 6406 0.685458 AGCCAATCATTGACCTGGGC 60.685 55.000 15.18 12.71 40.18 5.36
2659 6407 1.108776 CAGCCAATCATTGACCTGGG 58.891 55.000 15.18 5.05 0.00 4.45
2660 6408 2.133281 TCAGCCAATCATTGACCTGG 57.867 50.000 14.38 10.88 33.52 4.45
2661 6409 3.446161 ACATTCAGCCAATCATTGACCTG 59.554 43.478 0.00 5.40 33.79 4.00
2662 6410 3.446161 CACATTCAGCCAATCATTGACCT 59.554 43.478 0.00 0.00 0.00 3.85
2663 6411 3.429822 CCACATTCAGCCAATCATTGACC 60.430 47.826 0.00 0.00 0.00 4.02
2664 6412 3.429822 CCCACATTCAGCCAATCATTGAC 60.430 47.826 0.00 0.00 0.00 3.18
2665 6413 2.761767 CCCACATTCAGCCAATCATTGA 59.238 45.455 0.00 0.00 0.00 2.57
2666 6414 2.498481 ACCCACATTCAGCCAATCATTG 59.502 45.455 0.00 0.00 0.00 2.82
2667 6415 2.823959 ACCCACATTCAGCCAATCATT 58.176 42.857 0.00 0.00 0.00 2.57
2668 6416 2.498481 CAACCCACATTCAGCCAATCAT 59.502 45.455 0.00 0.00 0.00 2.45
2669 6417 1.894466 CAACCCACATTCAGCCAATCA 59.106 47.619 0.00 0.00 0.00 2.57
2670 6418 1.895131 ACAACCCACATTCAGCCAATC 59.105 47.619 0.00 0.00 0.00 2.67
2671 6419 2.014010 ACAACCCACATTCAGCCAAT 57.986 45.000 0.00 0.00 0.00 3.16
2672 6420 1.686052 GAACAACCCACATTCAGCCAA 59.314 47.619 0.00 0.00 0.00 4.52
2673 6421 1.327303 GAACAACCCACATTCAGCCA 58.673 50.000 0.00 0.00 0.00 4.75
2674 6422 0.603065 GGAACAACCCACATTCAGCC 59.397 55.000 0.00 0.00 0.00 4.85
2685 6433 1.595093 CTGGCCAATCGGGAACAACC 61.595 60.000 7.01 0.00 40.01 3.77
2686 6434 1.595093 CCTGGCCAATCGGGAACAAC 61.595 60.000 7.01 0.00 40.01 3.32
2687 6435 1.304052 CCTGGCCAATCGGGAACAA 60.304 57.895 7.01 0.00 40.01 2.83
2688 6436 2.227757 TCCTGGCCAATCGGGAACA 61.228 57.895 7.01 0.00 39.11 3.18
2689 6437 1.749258 GTCCTGGCCAATCGGGAAC 60.749 63.158 12.79 4.69 43.21 3.62
2690 6438 2.674754 GTCCTGGCCAATCGGGAA 59.325 61.111 12.79 0.00 43.21 3.97
2691 6439 3.407967 GGTCCTGGCCAATCGGGA 61.408 66.667 7.01 7.21 40.01 5.14
2692 6440 3.727258 TGGTCCTGGCCAATCGGG 61.727 66.667 7.01 4.27 35.25 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.