Multiple sequence alignment - TraesCS2B01G251400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G251400 chr2B 100.000 3102 0 0 1 3102 263813711 263810610 0.000000e+00 5729.0
1 TraesCS2B01G251400 chr2B 82.828 99 17 0 1426 1524 94033973 94033875 4.260000e-14 89.8
2 TraesCS2B01G251400 chr2B 82.353 102 16 2 1432 1532 93689021 93688921 1.530000e-13 87.9
3 TraesCS2B01G251400 chr2D 97.962 1619 30 1 678 2296 209026364 209024749 0.000000e+00 2804.0
4 TraesCS2B01G251400 chr2D 91.692 662 28 10 1 660 209026988 209026352 0.000000e+00 893.0
5 TraesCS2B01G251400 chr2D 90.119 253 22 3 2817 3068 209010936 209010686 2.980000e-85 326.0
6 TraesCS2B01G251400 chr2D 83.178 107 18 0 1426 1532 60015817 60015711 7.080000e-17 99.0
7 TraesCS2B01G251400 chr2D 81.308 107 20 0 1423 1529 59845936 59846042 1.530000e-13 87.9
8 TraesCS2B01G251400 chr2A 95.959 965 23 7 1342 2296 262118359 262117401 0.000000e+00 1552.0
9 TraesCS2B01G251400 chr2A 96.800 625 19 1 724 1347 262119011 262118387 0.000000e+00 1042.0
10 TraesCS2B01G251400 chr2A 92.000 450 10 3 1 450 262161220 262160797 2.650000e-170 608.0
11 TraesCS2B01G251400 chr2A 93.160 307 19 2 2762 3068 262116319 262116015 1.700000e-122 449.0
12 TraesCS2B01G251400 chr2A 87.789 303 33 4 2298 2596 409643989 409644291 4.920000e-93 351.0
13 TraesCS2B01G251400 chr2A 93.023 172 11 1 2597 2768 262117413 262117243 1.850000e-62 250.0
14 TraesCS2B01G251400 chr2A 95.588 136 6 0 444 579 262126053 262125918 5.210000e-53 219.0
15 TraesCS2B01G251400 chr2A 82.524 103 16 2 1431 1532 59873478 59873377 4.260000e-14 89.8
16 TraesCS2B01G251400 chr2A 81.731 104 19 0 1426 1529 59723884 59723987 1.530000e-13 87.9
17 TraesCS2B01G251400 chr6A 89.073 302 30 3 2298 2596 422776249 422775948 3.780000e-99 372.0
18 TraesCS2B01G251400 chr3D 88.742 302 30 4 2298 2596 79555100 79555400 1.760000e-97 366.0
19 TraesCS2B01G251400 chr3D 88.060 67 8 0 1669 1735 177779257 177779323 2.560000e-11 80.5
20 TraesCS2B01G251400 chr1D 88.079 302 33 3 2298 2596 69475971 69475670 3.800000e-94 355.0
21 TraesCS2B01G251400 chr1D 81.013 79 11 4 1647 1723 433061204 433061280 3.340000e-05 60.2
22 TraesCS2B01G251400 chr1D 81.013 79 11 4 1647 1723 433093269 433093345 3.340000e-05 60.2
23 TraesCS2B01G251400 chr1B 87.987 308 27 9 2296 2596 661439000 661438696 3.800000e-94 355.0
24 TraesCS2B01G251400 chr1B 80.769 78 13 2 1647 1723 584654868 584654944 3.340000e-05 60.2
25 TraesCS2B01G251400 chr6D 87.708 301 35 2 2298 2596 454889236 454889536 1.770000e-92 350.0
26 TraesCS2B01G251400 chr3A 87.541 305 34 4 2297 2597 111840099 111839795 1.770000e-92 350.0
27 TraesCS2B01G251400 chr3A 88.060 67 8 0 1669 1735 218729669 218729735 2.560000e-11 80.5
28 TraesCS2B01G251400 chr5B 87.582 306 28 9 2298 2596 8364308 8364006 2.290000e-91 346.0
29 TraesCS2B01G251400 chr5B 83.654 104 17 0 1426 1529 508065425 508065528 7.080000e-17 99.0
30 TraesCS2B01G251400 chr4A 87.459 303 34 4 2298 2596 521058457 521058759 2.290000e-91 346.0
31 TraesCS2B01G251400 chr3B 88.060 67 8 0 1669 1735 256434837 256434903 2.560000e-11 80.5
32 TraesCS2B01G251400 chr1A 82.051 78 12 2 1647 1723 531367657 531367733 7.180000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G251400 chr2B 263810610 263813711 3101 True 5729.00 5729 100.0000 1 3102 1 chr2B.!!$R3 3101
1 TraesCS2B01G251400 chr2D 209024749 209026988 2239 True 1848.50 2804 94.8270 1 2296 2 chr2D.!!$R3 2295
2 TraesCS2B01G251400 chr2A 262116015 262119011 2996 True 823.25 1552 94.7355 724 3068 4 chr2A.!!$R4 2344

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.179179 GTCTTGCGGCAATTCAGAGC 60.179 55.0 16.8 1.75 0.00 4.09 F
997 1000 0.640768 GTTCATTTCTCCGACGAGCG 59.359 55.0 0.0 0.00 35.94 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1795 1832 1.004560 CTTGCGCCTCAGGAAGTCA 60.005 57.895 4.18 0.0 35.28 3.41 R
2362 2408 0.036388 AAGGGTAGGATGTGCGTGTG 60.036 55.000 0.00 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.871594 CCTTGAGAGTTTTGAACGTCACT 59.128 43.478 0.00 0.00 36.23 3.41
45 46 6.140579 AGTTTTGAACGTCACTCACATGAGT 61.141 40.000 8.77 8.77 45.53 3.41
153 154 1.401552 GCATGGAACGATTTGCTAGCA 59.598 47.619 14.93 14.93 32.41 3.49
175 176 1.536766 CAAGTCTTGCGGCAATTCAGA 59.463 47.619 16.80 6.95 0.00 3.27
177 178 0.179179 GTCTTGCGGCAATTCAGAGC 60.179 55.000 16.80 1.75 0.00 4.09
180 181 1.329906 CTTGCGGCAATTCAGAGCTAG 59.670 52.381 16.80 0.00 0.00 3.42
204 205 5.745770 GCCTTGTGAGAAAATTTCCCCAATT 60.746 40.000 1.57 0.00 36.57 2.32
229 230 6.503589 TTTTCTTGGGGTATGAATACGTTG 57.496 37.500 0.00 0.00 34.11 4.10
230 231 4.145365 TCTTGGGGTATGAATACGTTGG 57.855 45.455 0.00 0.00 34.11 3.77
231 232 3.775866 TCTTGGGGTATGAATACGTTGGA 59.224 43.478 0.00 0.00 34.11 3.53
232 233 3.830744 TGGGGTATGAATACGTTGGAG 57.169 47.619 0.00 0.00 34.11 3.86
240 241 6.092259 GGTATGAATACGTTGGAGCATTATCC 59.908 42.308 0.00 0.00 35.67 2.59
281 282 3.118884 TCCTCCGAATACCAAACTGTAGC 60.119 47.826 0.00 0.00 0.00 3.58
339 340 9.165057 ACTCCTGAATCCTAGAATAGCTTAATT 57.835 33.333 0.00 0.00 37.37 1.40
354 355 9.995003 AATAGCTTAATTGGATTTGTTTGTTGA 57.005 25.926 0.00 0.00 0.00 3.18
391 392 1.070289 GAGTTTTCTCCCACACCGACT 59.930 52.381 0.00 0.00 40.79 4.18
392 393 1.489230 AGTTTTCTCCCACACCGACTT 59.511 47.619 0.00 0.00 0.00 3.01
397 400 2.816411 TCTCCCACACCGACTTATCTT 58.184 47.619 0.00 0.00 0.00 2.40
417 420 1.623163 TCCATGTGACACCGACACTA 58.377 50.000 2.45 0.00 38.81 2.74
506 509 9.073475 TGTGGCTATACAAATACTTTGACTTTT 57.927 29.630 6.61 0.00 43.26 2.27
559 562 1.757682 AATATCGGGCGCCTGAAAAA 58.242 45.000 39.93 27.66 34.70 1.94
584 587 2.885266 TCAGTCGTCAGTAACTGCTTCT 59.115 45.455 0.00 0.00 42.10 2.85
612 615 4.411256 CATGCTTGCATAATCCCCTTTT 57.589 40.909 7.84 0.00 0.00 2.27
613 616 3.891422 TGCTTGCATAATCCCCTTTTG 57.109 42.857 0.00 0.00 0.00 2.44
614 617 3.172339 TGCTTGCATAATCCCCTTTTGT 58.828 40.909 0.00 0.00 0.00 2.83
615 618 3.582208 TGCTTGCATAATCCCCTTTTGTT 59.418 39.130 0.00 0.00 0.00 2.83
616 619 4.041444 TGCTTGCATAATCCCCTTTTGTTT 59.959 37.500 0.00 0.00 0.00 2.83
617 620 4.631377 GCTTGCATAATCCCCTTTTGTTTC 59.369 41.667 0.00 0.00 0.00 2.78
618 621 5.792741 CTTGCATAATCCCCTTTTGTTTCA 58.207 37.500 0.00 0.00 0.00 2.69
619 622 6.371595 TTGCATAATCCCCTTTTGTTTCAT 57.628 33.333 0.00 0.00 0.00 2.57
624 627 7.633334 GCATAATCCCCTTTTGTTTCATCATGA 60.633 37.037 0.00 0.00 0.00 3.07
635 638 2.034104 TCATCATGAAGCTCAGGCAC 57.966 50.000 0.00 0.00 41.70 5.01
641 644 1.538047 TGAAGCTCAGGCACAATTCC 58.462 50.000 0.00 0.00 41.70 3.01
646 649 1.203287 GCTCAGGCACAATTCCCTTTC 59.797 52.381 0.00 0.00 38.54 2.62
660 663 7.733047 ACAATTCCCTTTCCCTTTTGTTATACT 59.267 33.333 0.00 0.00 0.00 2.12
661 664 8.593679 CAATTCCCTTTCCCTTTTGTTATACTT 58.406 33.333 0.00 0.00 0.00 2.24
662 665 8.736097 ATTCCCTTTCCCTTTTGTTATACTTT 57.264 30.769 0.00 0.00 0.00 2.66
663 666 8.555896 TTCCCTTTCCCTTTTGTTATACTTTT 57.444 30.769 0.00 0.00 0.00 2.27
664 667 8.555896 TCCCTTTCCCTTTTGTTATACTTTTT 57.444 30.769 0.00 0.00 0.00 1.94
731 734 9.959749 TTTGTTTACTTATTTCAGACATTGGAC 57.040 29.630 0.00 0.00 0.00 4.02
807 810 2.247790 GCACACGCTGACCTGATTT 58.752 52.632 0.00 0.00 34.30 2.17
945 948 5.235616 GCGCAAAACTATATAACCAGCACTA 59.764 40.000 0.30 0.00 0.00 2.74
971 974 3.276857 CAACCTCAGGTCAATCCATCTG 58.723 50.000 0.00 0.00 39.02 2.90
974 977 2.502947 CCTCAGGTCAATCCATCTGTCA 59.497 50.000 0.00 0.00 39.02 3.58
978 981 3.688185 CAGGTCAATCCATCTGTCAACAG 59.312 47.826 3.69 3.69 41.02 3.16
997 1000 0.640768 GTTCATTTCTCCGACGAGCG 59.359 55.000 0.00 0.00 35.94 5.03
1033 1036 1.178276 GTCGCTTCTCTCCTTCCTCA 58.822 55.000 0.00 0.00 0.00 3.86
1387 1424 1.465387 GACGCGTCGATCCTGATAGAT 59.535 52.381 25.19 0.00 0.00 1.98
1561 1598 1.687493 GGGAGTGAGCTACTGGCCT 60.687 63.158 3.32 0.00 40.53 5.19
1795 1832 2.654877 CTGGACGGCAAGTACGGT 59.345 61.111 0.00 0.00 36.10 4.83
2025 2062 2.434185 GTTCGCCGAGTCCATGCA 60.434 61.111 0.00 0.00 0.00 3.96
2104 2141 0.527817 CCGCCGTCAACTACTGATCC 60.528 60.000 0.00 0.00 36.14 3.36
2269 2315 1.518325 TGTGGTGTAAAGTCATGGCG 58.482 50.000 0.00 0.00 0.00 5.69
2296 2342 3.012518 CAGACATACTTTTGCCTCCCAG 58.987 50.000 0.00 0.00 0.00 4.45
2297 2343 2.644798 AGACATACTTTTGCCTCCCAGT 59.355 45.455 0.00 0.00 0.00 4.00
2298 2344 3.074538 AGACATACTTTTGCCTCCCAGTT 59.925 43.478 0.00 0.00 0.00 3.16
2299 2345 3.826729 GACATACTTTTGCCTCCCAGTTT 59.173 43.478 0.00 0.00 0.00 2.66
2300 2346 4.223144 ACATACTTTTGCCTCCCAGTTTT 58.777 39.130 0.00 0.00 0.00 2.43
2301 2347 4.653801 ACATACTTTTGCCTCCCAGTTTTT 59.346 37.500 0.00 0.00 0.00 1.94
2318 2364 2.748461 TTTTAACACAGCACAGACGC 57.252 45.000 0.00 0.00 0.00 5.19
2319 2365 1.657822 TTTAACACAGCACAGACGCA 58.342 45.000 0.00 0.00 0.00 5.24
2320 2366 1.657822 TTAACACAGCACAGACGCAA 58.342 45.000 0.00 0.00 0.00 4.85
2322 2368 2.051804 AACACAGCACAGACGCAAGC 62.052 55.000 0.00 0.00 45.62 4.01
2323 2369 3.341043 ACAGCACAGACGCAAGCG 61.341 61.111 13.50 13.50 46.03 4.68
2324 2370 4.731503 CAGCACAGACGCAAGCGC 62.732 66.667 15.09 0.00 44.19 5.92
2325 2371 4.976925 AGCACAGACGCAAGCGCT 62.977 61.111 15.09 2.64 44.19 5.92
2326 2372 4.436448 GCACAGACGCAAGCGCTC 62.436 66.667 12.06 11.06 44.19 5.03
2327 2373 4.126390 CACAGACGCAAGCGCTCG 62.126 66.667 12.06 14.49 44.19 5.03
2328 2374 4.647615 ACAGACGCAAGCGCTCGT 62.648 61.111 22.23 22.23 44.19 4.18
2329 2375 2.504026 CAGACGCAAGCGCTCGTA 60.504 61.111 22.11 0.00 44.19 3.43
2330 2376 1.874019 CAGACGCAAGCGCTCGTAT 60.874 57.895 22.11 17.26 44.19 3.06
2331 2377 0.591488 CAGACGCAAGCGCTCGTATA 60.591 55.000 22.11 0.00 44.19 1.47
2332 2378 0.311165 AGACGCAAGCGCTCGTATAT 59.689 50.000 22.11 10.14 44.19 0.86
2333 2379 1.534163 AGACGCAAGCGCTCGTATATA 59.466 47.619 22.11 0.00 44.19 0.86
2334 2380 1.642843 GACGCAAGCGCTCGTATATAC 59.357 52.381 22.11 7.66 44.19 1.47
2335 2381 1.984328 ACGCAAGCGCTCGTATATACG 60.984 52.381 25.88 25.88 46.10 3.06
2347 2393 3.739494 CGTATATACGCGCATACACTCA 58.261 45.455 21.35 0.00 43.14 3.41
2348 2394 3.537225 CGTATATACGCGCATACACTCAC 59.463 47.826 21.35 6.78 43.14 3.51
2349 2395 2.410785 TATACGCGCATACACTCACC 57.589 50.000 5.73 0.00 0.00 4.02
2350 2396 0.249322 ATACGCGCATACACTCACCC 60.249 55.000 5.73 0.00 0.00 4.61
2351 2397 1.317431 TACGCGCATACACTCACCCT 61.317 55.000 5.73 0.00 0.00 4.34
2352 2398 1.447838 CGCGCATACACTCACCCTT 60.448 57.895 8.75 0.00 0.00 3.95
2353 2399 0.179121 CGCGCATACACTCACCCTTA 60.179 55.000 8.75 0.00 0.00 2.69
2354 2400 1.538204 CGCGCATACACTCACCCTTAT 60.538 52.381 8.75 0.00 0.00 1.73
2355 2401 1.867233 GCGCATACACTCACCCTTATG 59.133 52.381 0.30 0.00 0.00 1.90
2356 2402 2.483013 GCGCATACACTCACCCTTATGA 60.483 50.000 0.30 0.00 0.00 2.15
2357 2403 3.792401 CGCATACACTCACCCTTATGAA 58.208 45.455 0.00 0.00 0.00 2.57
2358 2404 3.555956 CGCATACACTCACCCTTATGAAC 59.444 47.826 0.00 0.00 0.00 3.18
2359 2405 3.555956 GCATACACTCACCCTTATGAACG 59.444 47.826 0.00 0.00 0.00 3.95
2360 2406 2.094762 ACACTCACCCTTATGAACGC 57.905 50.000 0.00 0.00 0.00 4.84
2361 2407 1.346395 ACACTCACCCTTATGAACGCA 59.654 47.619 0.00 0.00 0.00 5.24
2362 2408 1.732259 CACTCACCCTTATGAACGCAC 59.268 52.381 0.00 0.00 0.00 5.34
2363 2409 1.346395 ACTCACCCTTATGAACGCACA 59.654 47.619 0.00 0.00 0.00 4.57
2364 2410 1.732259 CTCACCCTTATGAACGCACAC 59.268 52.381 0.00 0.00 0.00 3.82
2365 2411 1.070914 TCACCCTTATGAACGCACACA 59.929 47.619 0.00 0.00 0.00 3.72
2366 2412 1.196808 CACCCTTATGAACGCACACAC 59.803 52.381 0.00 0.00 0.00 3.82
2367 2413 0.442310 CCCTTATGAACGCACACACG 59.558 55.000 0.00 0.00 39.50 4.49
2368 2414 0.179225 CCTTATGAACGCACACACGC 60.179 55.000 0.00 0.00 36.19 5.34
2369 2415 0.510790 CTTATGAACGCACACACGCA 59.489 50.000 0.00 0.00 36.19 5.24
2370 2416 0.233590 TTATGAACGCACACACGCAC 59.766 50.000 0.00 0.00 36.19 5.34
2371 2417 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
2372 2418 1.506309 ATGAACGCACACACGCACAT 61.506 50.000 0.00 0.00 36.19 3.21
2373 2419 1.438710 GAACGCACACACGCACATC 60.439 57.895 0.00 0.00 36.19 3.06
2374 2420 2.764251 GAACGCACACACGCACATCC 62.764 60.000 0.00 0.00 36.19 3.51
2375 2421 3.043713 CGCACACACGCACATCCT 61.044 61.111 0.00 0.00 0.00 3.24
2376 2422 1.736282 CGCACACACGCACATCCTA 60.736 57.895 0.00 0.00 0.00 2.94
2377 2423 1.787847 GCACACACGCACATCCTAC 59.212 57.895 0.00 0.00 0.00 3.18
2378 2424 1.635663 GCACACACGCACATCCTACC 61.636 60.000 0.00 0.00 0.00 3.18
2379 2425 1.019278 CACACACGCACATCCTACCC 61.019 60.000 0.00 0.00 0.00 3.69
2380 2426 1.192146 ACACACGCACATCCTACCCT 61.192 55.000 0.00 0.00 0.00 4.34
2381 2427 0.036388 CACACGCACATCCTACCCTT 60.036 55.000 0.00 0.00 0.00 3.95
2382 2428 1.206132 CACACGCACATCCTACCCTTA 59.794 52.381 0.00 0.00 0.00 2.69
2383 2429 2.116238 ACACGCACATCCTACCCTTAT 58.884 47.619 0.00 0.00 0.00 1.73
2384 2430 2.158957 ACACGCACATCCTACCCTTATG 60.159 50.000 0.00 0.00 0.00 1.90
2385 2431 2.102420 CACGCACATCCTACCCTTATGA 59.898 50.000 0.00 0.00 0.00 2.15
2386 2432 2.365617 ACGCACATCCTACCCTTATGAG 59.634 50.000 0.00 0.00 0.00 2.90
2387 2433 2.772287 GCACATCCTACCCTTATGAGC 58.228 52.381 0.00 0.00 31.75 4.26
2388 2434 2.104792 GCACATCCTACCCTTATGAGCA 59.895 50.000 0.00 0.00 37.23 4.26
2389 2435 3.733337 CACATCCTACCCTTATGAGCAC 58.267 50.000 0.00 0.00 0.00 4.40
2390 2436 3.134623 CACATCCTACCCTTATGAGCACA 59.865 47.826 0.00 0.00 0.00 4.57
2391 2437 3.976654 ACATCCTACCCTTATGAGCACAT 59.023 43.478 1.31 1.31 40.16 3.21
2392 2438 4.040952 ACATCCTACCCTTATGAGCACATC 59.959 45.833 0.00 0.00 37.87 3.06
2393 2439 2.972713 TCCTACCCTTATGAGCACATCC 59.027 50.000 0.00 0.00 37.87 3.51
2394 2440 2.289072 CCTACCCTTATGAGCACATCCG 60.289 54.545 0.00 0.00 37.87 4.18
2395 2441 1.496060 ACCCTTATGAGCACATCCGA 58.504 50.000 0.00 0.00 37.87 4.55
2396 2442 1.414181 ACCCTTATGAGCACATCCGAG 59.586 52.381 0.00 0.00 37.87 4.63
2397 2443 1.688735 CCCTTATGAGCACATCCGAGA 59.311 52.381 0.00 0.00 37.87 4.04
2398 2444 2.288702 CCCTTATGAGCACATCCGAGAG 60.289 54.545 0.00 0.00 37.87 3.20
2399 2445 2.625314 CCTTATGAGCACATCCGAGAGA 59.375 50.000 0.00 0.00 37.87 3.10
2400 2446 3.551863 CCTTATGAGCACATCCGAGAGAC 60.552 52.174 0.00 0.00 37.87 3.36
2401 2447 1.774110 ATGAGCACATCCGAGAGACT 58.226 50.000 0.00 0.00 29.98 3.24
2402 2448 0.813821 TGAGCACATCCGAGAGACTG 59.186 55.000 0.00 0.00 0.00 3.51
2403 2449 1.098869 GAGCACATCCGAGAGACTGA 58.901 55.000 0.00 0.00 0.00 3.41
2404 2450 1.065401 GAGCACATCCGAGAGACTGAG 59.935 57.143 0.00 0.00 0.00 3.35
2405 2451 0.527385 GCACATCCGAGAGACTGAGC 60.527 60.000 0.00 0.00 0.00 4.26
2406 2452 0.102120 CACATCCGAGAGACTGAGCC 59.898 60.000 0.00 0.00 0.00 4.70
2407 2453 1.358402 CATCCGAGAGACTGAGCCG 59.642 63.158 0.00 0.00 0.00 5.52
2408 2454 1.098129 CATCCGAGAGACTGAGCCGA 61.098 60.000 0.00 0.00 0.00 5.54
2409 2455 1.098712 ATCCGAGAGACTGAGCCGAC 61.099 60.000 0.00 0.00 0.00 4.79
2410 2456 2.041115 CCGAGAGACTGAGCCGACA 61.041 63.158 0.00 0.00 0.00 4.35
2411 2457 1.380403 CCGAGAGACTGAGCCGACAT 61.380 60.000 0.00 0.00 0.00 3.06
2412 2458 1.300481 CGAGAGACTGAGCCGACATA 58.700 55.000 0.00 0.00 0.00 2.29
2413 2459 1.876799 CGAGAGACTGAGCCGACATAT 59.123 52.381 0.00 0.00 0.00 1.78
2414 2460 2.095969 CGAGAGACTGAGCCGACATATC 60.096 54.545 0.00 0.00 0.00 1.63
2415 2461 2.881513 GAGAGACTGAGCCGACATATCA 59.118 50.000 0.00 0.00 0.00 2.15
2416 2462 3.495331 AGAGACTGAGCCGACATATCAT 58.505 45.455 0.00 0.00 0.00 2.45
2417 2463 4.657013 AGAGACTGAGCCGACATATCATA 58.343 43.478 0.00 0.00 0.00 2.15
2418 2464 5.260424 AGAGACTGAGCCGACATATCATAT 58.740 41.667 0.00 0.00 0.00 1.78
2419 2465 5.714333 AGAGACTGAGCCGACATATCATATT 59.286 40.000 0.00 0.00 0.00 1.28
2420 2466 5.718146 AGACTGAGCCGACATATCATATTG 58.282 41.667 0.00 0.00 0.00 1.90
2421 2467 5.478332 AGACTGAGCCGACATATCATATTGA 59.522 40.000 0.00 0.00 0.00 2.57
2422 2468 5.718146 ACTGAGCCGACATATCATATTGAG 58.282 41.667 0.00 0.00 0.00 3.02
2423 2469 5.478332 ACTGAGCCGACATATCATATTGAGA 59.522 40.000 0.00 0.00 0.00 3.27
2424 2470 6.154192 ACTGAGCCGACATATCATATTGAGAT 59.846 38.462 0.00 0.00 0.00 2.75
2425 2471 6.939622 TGAGCCGACATATCATATTGAGATT 58.060 36.000 0.00 0.00 0.00 2.40
2426 2472 7.389232 TGAGCCGACATATCATATTGAGATTT 58.611 34.615 0.00 0.00 0.00 2.17
2427 2473 7.879677 TGAGCCGACATATCATATTGAGATTTT 59.120 33.333 0.00 0.00 0.00 1.82
2428 2474 9.371136 GAGCCGACATATCATATTGAGATTTTA 57.629 33.333 0.00 0.00 0.00 1.52
2429 2475 9.155975 AGCCGACATATCATATTGAGATTTTAC 57.844 33.333 0.00 0.00 0.00 2.01
2430 2476 8.110612 GCCGACATATCATATTGAGATTTTACG 58.889 37.037 0.00 0.00 0.00 3.18
2431 2477 9.353999 CCGACATATCATATTGAGATTTTACGA 57.646 33.333 0.00 0.00 0.00 3.43
2438 2484 8.420374 TCATATTGAGATTTTACGAAGTCACC 57.580 34.615 0.00 0.00 43.93 4.02
2439 2485 5.779806 ATTGAGATTTTACGAAGTCACCG 57.220 39.130 0.00 0.00 43.93 4.94
2440 2486 4.247267 TGAGATTTTACGAAGTCACCGT 57.753 40.909 0.00 0.00 43.93 4.83
2441 2487 5.375417 TGAGATTTTACGAAGTCACCGTA 57.625 39.130 0.00 0.00 43.93 4.02
2442 2488 5.396484 TGAGATTTTACGAAGTCACCGTAG 58.604 41.667 0.00 0.00 43.93 3.51
2443 2489 5.181811 TGAGATTTTACGAAGTCACCGTAGA 59.818 40.000 0.00 0.00 43.93 2.59
2444 2490 5.397326 AGATTTTACGAAGTCACCGTAGAC 58.603 41.667 0.00 0.00 43.93 2.59
2445 2491 2.880822 TTACGAAGTCACCGTAGACG 57.119 50.000 0.00 0.00 43.93 4.18
2446 2492 0.443869 TACGAAGTCACCGTAGACGC 59.556 55.000 0.00 0.00 43.93 5.19
2447 2493 1.513586 CGAAGTCACCGTAGACGCC 60.514 63.158 0.00 0.00 43.24 5.68
2448 2494 1.881602 GAAGTCACCGTAGACGCCT 59.118 57.895 0.00 0.00 43.24 5.52
2449 2495 0.243095 GAAGTCACCGTAGACGCCTT 59.757 55.000 0.00 0.00 43.24 4.35
2450 2496 0.038526 AAGTCACCGTAGACGCCTTG 60.039 55.000 0.00 0.00 43.24 3.61
2451 2497 1.177256 AGTCACCGTAGACGCCTTGT 61.177 55.000 0.00 0.00 43.24 3.16
2452 2498 0.523072 GTCACCGTAGACGCCTTGTA 59.477 55.000 0.00 0.00 38.18 2.41
2453 2499 0.806868 TCACCGTAGACGCCTTGTAG 59.193 55.000 0.00 0.00 38.18 2.74
2454 2500 0.524862 CACCGTAGACGCCTTGTAGT 59.475 55.000 0.00 0.00 38.18 2.73
2455 2501 1.068055 CACCGTAGACGCCTTGTAGTT 60.068 52.381 0.00 0.00 38.18 2.24
2456 2502 1.068055 ACCGTAGACGCCTTGTAGTTG 60.068 52.381 0.00 0.00 38.18 3.16
2457 2503 1.200716 CCGTAGACGCCTTGTAGTTGA 59.799 52.381 0.00 0.00 38.18 3.18
2458 2504 2.159282 CCGTAGACGCCTTGTAGTTGAT 60.159 50.000 0.00 0.00 38.18 2.57
2459 2505 2.852413 CGTAGACGCCTTGTAGTTGATG 59.148 50.000 0.00 0.00 0.00 3.07
2460 2506 2.386661 AGACGCCTTGTAGTTGATGG 57.613 50.000 0.00 0.00 0.00 3.51
2461 2507 1.899814 AGACGCCTTGTAGTTGATGGA 59.100 47.619 0.00 0.00 0.00 3.41
2462 2508 2.301870 AGACGCCTTGTAGTTGATGGAA 59.698 45.455 0.00 0.00 0.00 3.53
2463 2509 3.071479 GACGCCTTGTAGTTGATGGAAA 58.929 45.455 0.00 0.00 0.00 3.13
2464 2510 2.812011 ACGCCTTGTAGTTGATGGAAAC 59.188 45.455 0.00 0.00 0.00 2.78
2477 2523 2.044793 TGGAAACATCTCCTCCCACT 57.955 50.000 0.00 0.00 36.35 4.00
2478 2524 3.199442 TGGAAACATCTCCTCCCACTA 57.801 47.619 0.00 0.00 36.35 2.74
2479 2525 3.526899 TGGAAACATCTCCTCCCACTAA 58.473 45.455 0.00 0.00 36.35 2.24
2480 2526 3.913799 TGGAAACATCTCCTCCCACTAAA 59.086 43.478 0.00 0.00 36.35 1.85
2481 2527 4.262617 GGAAACATCTCCTCCCACTAAAC 58.737 47.826 0.00 0.00 32.21 2.01
2482 2528 3.611766 AACATCTCCTCCCACTAAACG 57.388 47.619 0.00 0.00 0.00 3.60
2483 2529 1.207329 ACATCTCCTCCCACTAAACGC 59.793 52.381 0.00 0.00 0.00 4.84
2484 2530 1.207089 CATCTCCTCCCACTAAACGCA 59.793 52.381 0.00 0.00 0.00 5.24
2485 2531 1.568504 TCTCCTCCCACTAAACGCAT 58.431 50.000 0.00 0.00 0.00 4.73
2486 2532 1.207089 TCTCCTCCCACTAAACGCATG 59.793 52.381 0.00 0.00 0.00 4.06
2487 2533 0.981183 TCCTCCCACTAAACGCATGT 59.019 50.000 0.00 0.00 0.00 3.21
2488 2534 1.066430 TCCTCCCACTAAACGCATGTC 60.066 52.381 0.00 0.00 0.00 3.06
2489 2535 1.338674 CCTCCCACTAAACGCATGTCA 60.339 52.381 0.00 0.00 0.00 3.58
2490 2536 1.732259 CTCCCACTAAACGCATGTCAC 59.268 52.381 0.00 0.00 0.00 3.67
2491 2537 0.802494 CCCACTAAACGCATGTCACC 59.198 55.000 0.00 0.00 0.00 4.02
2492 2538 0.442310 CCACTAAACGCATGTCACCG 59.558 55.000 0.00 0.00 0.00 4.94
2493 2539 0.442310 CACTAAACGCATGTCACCGG 59.558 55.000 0.00 0.00 0.00 5.28
2494 2540 0.319083 ACTAAACGCATGTCACCGGA 59.681 50.000 9.46 0.00 0.00 5.14
2495 2541 1.270412 ACTAAACGCATGTCACCGGAA 60.270 47.619 9.46 0.00 0.00 4.30
2496 2542 2.006888 CTAAACGCATGTCACCGGAAT 58.993 47.619 9.46 0.00 0.00 3.01
2497 2543 1.243902 AAACGCATGTCACCGGAATT 58.756 45.000 9.46 0.00 0.00 2.17
2498 2544 1.243902 AACGCATGTCACCGGAATTT 58.756 45.000 9.46 0.00 0.00 1.82
2499 2545 0.802494 ACGCATGTCACCGGAATTTC 59.198 50.000 9.46 0.00 0.00 2.17
2500 2546 1.086696 CGCATGTCACCGGAATTTCT 58.913 50.000 9.46 0.00 0.00 2.52
2501 2547 1.202065 CGCATGTCACCGGAATTTCTG 60.202 52.381 9.46 0.00 0.00 3.02
2502 2548 2.083774 GCATGTCACCGGAATTTCTGA 58.916 47.619 9.46 0.00 0.00 3.27
2503 2549 2.487762 GCATGTCACCGGAATTTCTGAA 59.512 45.455 9.46 0.00 0.00 3.02
2504 2550 3.057596 GCATGTCACCGGAATTTCTGAAA 60.058 43.478 9.46 5.15 0.00 2.69
2505 2551 4.380867 GCATGTCACCGGAATTTCTGAAAT 60.381 41.667 9.46 9.76 0.00 2.17
2506 2552 5.163663 GCATGTCACCGGAATTTCTGAAATA 60.164 40.000 15.45 0.00 0.00 1.40
2507 2553 6.624861 GCATGTCACCGGAATTTCTGAAATAA 60.625 38.462 15.45 0.00 0.00 1.40
2508 2554 6.885952 TGTCACCGGAATTTCTGAAATAAA 57.114 33.333 15.45 0.00 0.00 1.40
2509 2555 7.461182 TGTCACCGGAATTTCTGAAATAAAT 57.539 32.000 15.45 0.98 0.00 1.40
2510 2556 7.535139 TGTCACCGGAATTTCTGAAATAAATC 58.465 34.615 15.45 9.77 0.00 2.17
2511 2557 6.972901 GTCACCGGAATTTCTGAAATAAATCC 59.027 38.462 15.45 16.32 0.00 3.01
2512 2558 6.661377 TCACCGGAATTTCTGAAATAAATCCA 59.339 34.615 22.63 8.55 0.00 3.41
2513 2559 6.974622 CACCGGAATTTCTGAAATAAATCCAG 59.025 38.462 22.63 17.23 0.00 3.86
2514 2560 6.096846 ACCGGAATTTCTGAAATAAATCCAGG 59.903 38.462 22.63 23.10 0.00 4.45
2515 2561 6.321181 CCGGAATTTCTGAAATAAATCCAGGA 59.679 38.462 22.63 0.00 0.00 3.86
2516 2562 7.014615 CCGGAATTTCTGAAATAAATCCAGGAT 59.985 37.037 22.63 0.00 0.00 3.24
2517 2563 9.066892 CGGAATTTCTGAAATAAATCCAGGATA 57.933 33.333 22.63 0.00 0.00 2.59
2523 2569 7.874940 TCTGAAATAAATCCAGGATAAATGCG 58.125 34.615 1.02 0.00 0.00 4.73
2524 2570 7.719193 TCTGAAATAAATCCAGGATAAATGCGA 59.281 33.333 1.02 0.00 0.00 5.10
2525 2571 7.874940 TGAAATAAATCCAGGATAAATGCGAG 58.125 34.615 1.02 0.00 0.00 5.03
2526 2572 5.886960 ATAAATCCAGGATAAATGCGAGC 57.113 39.130 1.02 0.00 0.00 5.03
2527 2573 2.936919 ATCCAGGATAAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
2528 2574 1.953559 TCCAGGATAAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
2529 2575 0.947244 CCAGGATAAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
2530 2576 1.667236 CAGGATAAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
2531 2577 2.016318 CAGGATAAATGCGAGCACCAA 58.984 47.619 0.00 0.00 0.00 3.67
2532 2578 2.032550 CAGGATAAATGCGAGCACCAAG 59.967 50.000 0.00 0.00 0.00 3.61
2533 2579 2.092968 AGGATAAATGCGAGCACCAAGA 60.093 45.455 0.00 0.00 0.00 3.02
2534 2580 2.880890 GGATAAATGCGAGCACCAAGAT 59.119 45.455 0.00 0.00 0.00 2.40
2535 2581 3.316308 GGATAAATGCGAGCACCAAGATT 59.684 43.478 0.00 0.00 0.00 2.40
2536 2582 2.642139 AAATGCGAGCACCAAGATTG 57.358 45.000 0.00 0.00 0.00 2.67
2537 2583 1.825090 AATGCGAGCACCAAGATTGA 58.175 45.000 0.00 0.00 0.00 2.57
2538 2584 1.825090 ATGCGAGCACCAAGATTGAA 58.175 45.000 0.00 0.00 0.00 2.69
2539 2585 0.874390 TGCGAGCACCAAGATTGAAC 59.126 50.000 0.00 0.00 0.00 3.18
2540 2586 0.169009 GCGAGCACCAAGATTGAACC 59.831 55.000 0.00 0.00 0.00 3.62
2541 2587 0.804989 CGAGCACCAAGATTGAACCC 59.195 55.000 0.00 0.00 0.00 4.11
2542 2588 1.611673 CGAGCACCAAGATTGAACCCT 60.612 52.381 0.00 0.00 0.00 4.34
2543 2589 1.815003 GAGCACCAAGATTGAACCCTG 59.185 52.381 0.00 0.00 0.00 4.45
2544 2590 1.425066 AGCACCAAGATTGAACCCTGA 59.575 47.619 0.00 0.00 0.00 3.86
2545 2591 2.042162 AGCACCAAGATTGAACCCTGAT 59.958 45.455 0.00 0.00 0.00 2.90
2546 2592 2.165030 GCACCAAGATTGAACCCTGATG 59.835 50.000 0.00 0.00 0.00 3.07
2547 2593 2.756760 CACCAAGATTGAACCCTGATGG 59.243 50.000 0.00 0.00 41.37 3.51
2559 2605 1.365293 CCTGATGGGCTGGGATATCA 58.635 55.000 4.83 0.00 32.31 2.15
2560 2606 1.004044 CCTGATGGGCTGGGATATCAC 59.996 57.143 4.83 0.39 32.31 3.06
2561 2607 1.701292 CTGATGGGCTGGGATATCACA 59.299 52.381 7.60 7.60 0.00 3.58
2566 2612 1.131638 GGCTGGGATATCACAGTCCA 58.868 55.000 30.76 15.35 45.81 4.02
2567 2613 1.701847 GGCTGGGATATCACAGTCCAT 59.298 52.381 30.76 0.00 45.81 3.41
2568 2614 2.289945 GGCTGGGATATCACAGTCCATC 60.290 54.545 30.76 16.61 45.81 3.51
2569 2615 4.582524 GGCTGGGATATCACAGTCCATCT 61.583 52.174 30.76 0.00 45.81 2.90
2570 2616 5.302676 GGCTGGGATATCACAGTCCATCTA 61.303 50.000 30.76 0.00 45.81 1.98
2571 2617 6.747070 GGCTGGGATATCACAGTCCATCTAA 61.747 48.000 30.76 0.00 45.81 2.10
2572 2618 5.788450 CTGGGATATCACAGTCCATCTAAC 58.212 45.833 24.44 0.00 42.29 2.34
2573 2619 4.593206 TGGGATATCACAGTCCATCTAACC 59.407 45.833 2.71 0.00 36.19 2.85
2574 2620 4.593206 GGGATATCACAGTCCATCTAACCA 59.407 45.833 4.83 0.00 36.19 3.67
2575 2621 5.249393 GGGATATCACAGTCCATCTAACCAT 59.751 44.000 4.83 0.00 36.19 3.55
2576 2622 6.402222 GGATATCACAGTCCATCTAACCATC 58.598 44.000 4.83 0.00 34.57 3.51
2577 2623 4.696479 ATCACAGTCCATCTAACCATCC 57.304 45.455 0.00 0.00 0.00 3.51
2578 2624 3.449918 TCACAGTCCATCTAACCATCCA 58.550 45.455 0.00 0.00 0.00 3.41
2579 2625 3.843619 TCACAGTCCATCTAACCATCCAA 59.156 43.478 0.00 0.00 0.00 3.53
2580 2626 3.941483 CACAGTCCATCTAACCATCCAAC 59.059 47.826 0.00 0.00 0.00 3.77
2581 2627 3.054361 ACAGTCCATCTAACCATCCAACC 60.054 47.826 0.00 0.00 0.00 3.77
2582 2628 3.054434 CAGTCCATCTAACCATCCAACCA 60.054 47.826 0.00 0.00 0.00 3.67
2583 2629 3.054361 AGTCCATCTAACCATCCAACCAC 60.054 47.826 0.00 0.00 0.00 4.16
2584 2630 2.916269 TCCATCTAACCATCCAACCACA 59.084 45.455 0.00 0.00 0.00 4.17
2585 2631 3.332187 TCCATCTAACCATCCAACCACAA 59.668 43.478 0.00 0.00 0.00 3.33
2586 2632 3.696051 CCATCTAACCATCCAACCACAAG 59.304 47.826 0.00 0.00 0.00 3.16
2587 2633 4.335416 CATCTAACCATCCAACCACAAGT 58.665 43.478 0.00 0.00 0.00 3.16
2588 2634 4.447138 TCTAACCATCCAACCACAAGTT 57.553 40.909 0.00 0.00 40.16 2.66
2597 2643 4.157607 CCACAAGTTGGTTCGCCT 57.842 55.556 7.96 0.00 41.10 5.52
2598 2644 2.414750 CCACAAGTTGGTTCGCCTT 58.585 52.632 7.96 0.00 41.10 4.35
2599 2645 0.744281 CCACAAGTTGGTTCGCCTTT 59.256 50.000 7.96 0.00 41.10 3.11
2600 2646 1.136110 CCACAAGTTGGTTCGCCTTTT 59.864 47.619 7.96 0.00 41.10 2.27
2601 2647 2.192624 CACAAGTTGGTTCGCCTTTTG 58.807 47.619 7.96 0.00 38.36 2.44
2602 2648 1.208259 CAAGTTGGTTCGCCTTTTGC 58.792 50.000 0.00 0.00 38.36 3.68
2603 2649 0.104120 AAGTTGGTTCGCCTTTTGCC 59.896 50.000 0.00 0.00 38.36 4.52
2604 2650 0.755327 AGTTGGTTCGCCTTTTGCCT 60.755 50.000 0.00 0.00 38.36 4.75
2605 2651 0.104120 GTTGGTTCGCCTTTTGCCTT 59.896 50.000 0.00 0.00 38.36 4.35
2606 2652 0.387565 TTGGTTCGCCTTTTGCCTTC 59.612 50.000 0.00 0.00 38.36 3.46
2607 2653 1.289066 GGTTCGCCTTTTGCCTTCC 59.711 57.895 0.00 0.00 36.24 3.46
2608 2654 1.460273 GGTTCGCCTTTTGCCTTCCA 61.460 55.000 0.00 0.00 36.24 3.53
2612 2658 0.602562 CGCCTTTTGCCTTCCATTGA 59.397 50.000 0.00 0.00 36.24 2.57
2640 2686 6.460676 GGAGCCGATGAATGATCTTTTTCAAT 60.461 38.462 9.36 1.74 35.63 2.57
2643 2689 6.197842 GCCGATGAATGATCTTTTTCAATGTC 59.802 38.462 9.36 4.23 35.63 3.06
2659 2705 9.632807 TTTTCAATGTCTTTTTCTCTTTTCGAA 57.367 25.926 0.00 0.00 0.00 3.71
2660 2706 9.801873 TTTCAATGTCTTTTTCTCTTTTCGAAT 57.198 25.926 0.00 0.00 0.00 3.34
2661 2707 9.801873 TTCAATGTCTTTTTCTCTTTTCGAATT 57.198 25.926 0.00 0.00 0.00 2.17
2671 2717 7.996098 TTCTCTTTTCGAATTACCCAAATCT 57.004 32.000 0.00 0.00 0.00 2.40
2768 2814 8.218338 ACTTCATGGACTGTATGATTTCAATC 57.782 34.615 0.00 0.00 34.76 2.67
2783 3759 2.985896 TCAATCAAGGAGCCCTTTACG 58.014 47.619 3.93 0.00 41.69 3.18
2796 3772 1.369625 CTTTACGGGATGACTGGTGC 58.630 55.000 0.00 0.00 0.00 5.01
2802 3778 1.626356 GGGATGACTGGTGCTAGGCA 61.626 60.000 0.00 0.00 40.65 4.75
2825 3801 0.179084 TCGGTTGATCCATCGGAAGC 60.179 55.000 0.00 0.00 34.34 3.86
2832 3808 3.506398 TGATCCATCGGAAGCCACTATA 58.494 45.455 0.00 0.00 34.34 1.31
2854 3830 3.697045 AGTCTTCTTATGTGAGGTCGAGG 59.303 47.826 0.00 0.00 0.00 4.63
2857 3833 3.081710 TCTTATGTGAGGTCGAGGTCA 57.918 47.619 0.00 0.00 0.00 4.02
2866 3842 3.117474 TGAGGTCGAGGTCATCTAATCCT 60.117 47.826 0.00 0.00 0.00 3.24
2881 3857 4.964897 TCTAATCCTTGCTTCTCATCCTGA 59.035 41.667 0.00 0.00 0.00 3.86
2909 3885 6.553953 AAAGTCCTCCTTATCTTCTCCTTC 57.446 41.667 0.00 0.00 31.48 3.46
2926 3902 2.341257 CTTCATGTCTTGTCACTCCCG 58.659 52.381 0.00 0.00 0.00 5.14
2933 3909 0.900647 CTTGTCACTCCCGGTCTCCT 60.901 60.000 0.00 0.00 0.00 3.69
2934 3910 1.185618 TTGTCACTCCCGGTCTCCTG 61.186 60.000 0.00 0.00 0.00 3.86
2969 3945 4.373116 TCCGCTCGCAACTCCACC 62.373 66.667 0.00 0.00 0.00 4.61
2975 3951 2.355363 CGCAACTCCACCGTTCGA 60.355 61.111 0.00 0.00 0.00 3.71
2985 3961 2.963101 TCCACCGTTCGATAATGAGGAT 59.037 45.455 0.00 0.00 0.00 3.24
3047 4023 3.055094 ACCATGTCATCTACCAAGGTGTC 60.055 47.826 1.07 0.00 35.19 3.67
3071 4047 3.430862 GCCATTCGAGCGCACCAA 61.431 61.111 11.47 0.00 0.00 3.67
3072 4048 2.480555 CCATTCGAGCGCACCAAC 59.519 61.111 11.47 0.00 0.00 3.77
3073 4049 2.480555 CATTCGAGCGCACCAACC 59.519 61.111 11.47 0.00 0.00 3.77
3074 4050 2.034879 CATTCGAGCGCACCAACCT 61.035 57.895 11.47 0.00 0.00 3.50
3075 4051 1.741770 ATTCGAGCGCACCAACCTC 60.742 57.895 11.47 0.00 0.00 3.85
3078 4054 4.373116 GAGCGCACCAACCTCGGA 62.373 66.667 11.47 0.00 0.00 4.55
3079 4055 4.379243 AGCGCACCAACCTCGGAG 62.379 66.667 11.47 0.00 0.00 4.63
3080 4056 4.373116 GCGCACCAACCTCGGAGA 62.373 66.667 6.58 0.00 0.00 3.71
3081 4057 2.432628 CGCACCAACCTCGGAGAC 60.433 66.667 6.58 0.00 0.00 3.36
3082 4058 2.741092 GCACCAACCTCGGAGACA 59.259 61.111 6.58 0.00 0.00 3.41
3083 4059 1.070786 GCACCAACCTCGGAGACAA 59.929 57.895 6.58 0.00 0.00 3.18
3084 4060 0.951040 GCACCAACCTCGGAGACAAG 60.951 60.000 6.58 0.00 0.00 3.16
3085 4061 0.320771 CACCAACCTCGGAGACAAGG 60.321 60.000 6.58 5.49 0.00 3.61
3086 4062 0.471211 ACCAACCTCGGAGACAAGGA 60.471 55.000 6.58 0.00 0.00 3.36
3087 4063 0.685097 CCAACCTCGGAGACAAGGAA 59.315 55.000 6.58 0.00 0.00 3.36
3088 4064 1.338200 CCAACCTCGGAGACAAGGAAG 60.338 57.143 6.58 0.00 0.00 3.46
3089 4065 0.321996 AACCTCGGAGACAAGGAAGC 59.678 55.000 6.58 0.00 0.00 3.86
3090 4066 0.832135 ACCTCGGAGACAAGGAAGCA 60.832 55.000 6.58 0.00 0.00 3.91
3091 4067 0.108424 CCTCGGAGACAAGGAAGCAG 60.108 60.000 6.58 0.00 0.00 4.24
3092 4068 0.891373 CTCGGAGACAAGGAAGCAGA 59.109 55.000 0.00 0.00 0.00 4.26
3093 4069 1.273606 CTCGGAGACAAGGAAGCAGAA 59.726 52.381 0.00 0.00 0.00 3.02
3094 4070 1.691976 TCGGAGACAAGGAAGCAGAAA 59.308 47.619 0.00 0.00 0.00 2.52
3095 4071 2.072298 CGGAGACAAGGAAGCAGAAAG 58.928 52.381 0.00 0.00 0.00 2.62
3096 4072 1.809547 GGAGACAAGGAAGCAGAAAGC 59.190 52.381 0.00 0.00 46.19 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.971726 TCAAAACTCTCAAGGTAGTAGACA 57.028 37.500 0.00 0.00 0.00 3.41
18 19 3.863424 TGTGAGTGACGTTCAAAACTCTC 59.137 43.478 13.64 11.50 39.80 3.20
36 37 4.020839 TCAGCTCTGAATTCACTCATGTGA 60.021 41.667 3.38 0.67 42.80 3.58
175 176 4.460731 GGAAATTTTCTCACAAGGCTAGCT 59.539 41.667 15.72 0.00 0.00 3.32
177 178 4.158579 GGGGAAATTTTCTCACAAGGCTAG 59.841 45.833 11.03 0.00 0.00 3.42
180 181 2.632512 TGGGGAAATTTTCTCACAAGGC 59.367 45.455 11.03 0.00 0.00 4.35
210 211 4.127171 CTCCAACGTATTCATACCCCAAG 58.873 47.826 0.00 0.00 0.00 3.61
212 213 2.158871 GCTCCAACGTATTCATACCCCA 60.159 50.000 0.00 0.00 0.00 4.96
217 218 5.867174 CGGATAATGCTCCAACGTATTCATA 59.133 40.000 0.00 0.00 34.78 2.15
218 219 4.690748 CGGATAATGCTCCAACGTATTCAT 59.309 41.667 0.00 0.00 34.78 2.57
219 220 4.055360 CGGATAATGCTCCAACGTATTCA 58.945 43.478 0.00 0.00 34.78 2.57
220 221 4.056050 ACGGATAATGCTCCAACGTATTC 58.944 43.478 0.00 0.00 34.78 1.75
221 222 4.067972 ACGGATAATGCTCCAACGTATT 57.932 40.909 0.00 0.00 34.78 1.89
222 223 3.746045 ACGGATAATGCTCCAACGTAT 57.254 42.857 0.00 0.00 34.78 3.06
223 224 3.191669 CAACGGATAATGCTCCAACGTA 58.808 45.455 0.00 0.00 34.78 3.57
224 225 2.006888 CAACGGATAATGCTCCAACGT 58.993 47.619 0.00 0.00 34.78 3.99
225 226 2.006888 ACAACGGATAATGCTCCAACG 58.993 47.619 0.00 0.00 34.78 4.10
226 227 3.006940 TGACAACGGATAATGCTCCAAC 58.993 45.455 0.00 0.00 34.78 3.77
227 228 3.006940 GTGACAACGGATAATGCTCCAA 58.993 45.455 0.00 0.00 34.78 3.53
228 229 2.027653 TGTGACAACGGATAATGCTCCA 60.028 45.455 0.00 0.00 34.78 3.86
229 230 2.609459 CTGTGACAACGGATAATGCTCC 59.391 50.000 0.00 0.00 34.25 4.70
230 231 3.521560 TCTGTGACAACGGATAATGCTC 58.478 45.455 0.00 0.00 36.75 4.26
231 232 3.610040 TCTGTGACAACGGATAATGCT 57.390 42.857 0.00 0.00 36.75 3.79
232 233 3.932710 TCTTCTGTGACAACGGATAATGC 59.067 43.478 0.00 0.00 41.40 3.56
240 241 4.310769 AGGAAATCTCTTCTGTGACAACG 58.689 43.478 0.00 0.00 0.00 4.10
281 282 7.388500 TCGTAAAACTCCAATACTGGGTTAAAG 59.612 37.037 0.00 0.00 43.71 1.85
306 307 4.197750 TCTAGGATTCAGGAGTACACGTC 58.802 47.826 0.00 0.00 0.00 4.34
339 340 5.506686 TGATCGTTCAACAAACAAATCCA 57.493 34.783 0.00 0.00 37.77 3.41
354 355 3.753294 ACTCCACTCTGTTTGATCGTT 57.247 42.857 0.00 0.00 0.00 3.85
382 383 4.093408 CACATGGAAAGATAAGTCGGTGTG 59.907 45.833 0.00 0.00 0.00 3.82
391 392 4.250464 GTCGGTGTCACATGGAAAGATAA 58.750 43.478 5.12 0.00 0.00 1.75
392 393 3.259625 TGTCGGTGTCACATGGAAAGATA 59.740 43.478 5.12 0.00 0.00 1.98
397 400 0.756294 AGTGTCGGTGTCACATGGAA 59.244 50.000 5.12 0.00 38.16 3.53
417 420 3.986996 AAATAATGCAGCCTGCCTTTT 57.013 38.095 15.29 7.96 44.23 2.27
506 509 2.183478 AAACATCGACATGACAGGCA 57.817 45.000 0.00 0.00 33.72 4.75
538 541 2.623878 TTTCAGGCGCCCGATATTTA 57.376 45.000 26.15 0.00 0.00 1.40
559 562 4.632153 AGCAGTTACTGACGACTGAAATT 58.368 39.130 17.40 0.00 44.65 1.82
610 613 4.321452 GCCTGAGCTTCATGATGAAACAAA 60.321 41.667 9.39 0.00 35.73 2.83
611 614 3.192001 GCCTGAGCTTCATGATGAAACAA 59.808 43.478 9.39 0.00 35.73 2.83
612 615 2.751259 GCCTGAGCTTCATGATGAAACA 59.249 45.455 9.39 8.74 35.73 2.83
613 616 2.751259 TGCCTGAGCTTCATGATGAAAC 59.249 45.455 9.39 4.87 35.73 2.78
614 617 2.751259 GTGCCTGAGCTTCATGATGAAA 59.249 45.455 9.39 0.00 35.73 2.69
615 618 2.290450 TGTGCCTGAGCTTCATGATGAA 60.290 45.455 12.54 7.73 40.80 2.57
616 619 1.279846 TGTGCCTGAGCTTCATGATGA 59.720 47.619 12.54 0.00 40.80 2.92
617 620 1.746470 TGTGCCTGAGCTTCATGATG 58.254 50.000 0.00 0.00 40.80 3.07
618 621 2.502142 TTGTGCCTGAGCTTCATGAT 57.498 45.000 0.00 0.00 40.80 2.45
619 622 2.502142 ATTGTGCCTGAGCTTCATGA 57.498 45.000 0.00 0.00 40.80 3.07
624 627 0.407139 AGGGAATTGTGCCTGAGCTT 59.593 50.000 0.00 0.00 45.48 3.74
635 638 8.134202 AGTATAACAAAAGGGAAAGGGAATTG 57.866 34.615 0.00 0.00 0.00 2.32
664 667 1.555533 ACAAAAGGTTCCCCGCAAAAA 59.444 42.857 0.00 0.00 35.12 1.94
665 668 1.196012 ACAAAAGGTTCCCCGCAAAA 58.804 45.000 0.00 0.00 35.12 2.44
666 669 1.196012 AACAAAAGGTTCCCCGCAAA 58.804 45.000 0.00 0.00 33.35 3.68
667 670 2.068834 TAACAAAAGGTTCCCCGCAA 57.931 45.000 0.00 0.00 40.96 4.85
668 671 2.296073 ATAACAAAAGGTTCCCCGCA 57.704 45.000 0.00 0.00 40.96 5.69
669 672 3.083293 TGTATAACAAAAGGTTCCCCGC 58.917 45.455 0.00 0.00 40.96 6.13
670 673 4.763279 AGTTGTATAACAAAAGGTTCCCCG 59.237 41.667 5.08 0.00 40.15 5.73
671 674 6.944290 AGTAGTTGTATAACAAAAGGTTCCCC 59.056 38.462 5.08 0.00 40.15 4.81
672 675 7.991084 AGTAGTTGTATAACAAAAGGTTCCC 57.009 36.000 5.08 0.00 40.15 3.97
673 676 9.933723 TCTAGTAGTTGTATAACAAAAGGTTCC 57.066 33.333 5.08 0.00 40.15 3.62
675 678 9.716531 GGTCTAGTAGTTGTATAACAAAAGGTT 57.283 33.333 5.08 0.00 40.15 3.50
676 679 9.097946 AGGTCTAGTAGTTGTATAACAAAAGGT 57.902 33.333 5.08 0.00 40.15 3.50
677 680 9.367444 CAGGTCTAGTAGTTGTATAACAAAAGG 57.633 37.037 5.08 0.00 40.15 3.11
687 690 9.918630 GTAAACAAATCAGGTCTAGTAGTTGTA 57.081 33.333 0.00 0.00 0.00 2.41
688 691 8.648693 AGTAAACAAATCAGGTCTAGTAGTTGT 58.351 33.333 0.00 0.00 0.00 3.32
689 692 9.490379 AAGTAAACAAATCAGGTCTAGTAGTTG 57.510 33.333 0.00 0.00 0.00 3.16
731 734 5.543507 ATCAGCAAAGAGACCAGGTATAG 57.456 43.478 0.00 0.00 0.00 1.31
807 810 2.496070 CACGTAGGGAAAGGAGATGACA 59.504 50.000 0.00 0.00 0.00 3.58
945 948 2.040412 GGATTGACCTGAGGTTGGTTCT 59.960 50.000 5.21 0.00 38.03 3.01
971 974 3.120991 CGTCGGAGAAATGAACTGTTGAC 60.121 47.826 0.00 0.00 39.69 3.18
974 977 3.318017 CTCGTCGGAGAAATGAACTGTT 58.682 45.455 0.00 0.00 43.27 3.16
978 981 0.640768 CGCTCGTCGGAGAAATGAAC 59.359 55.000 0.00 0.00 43.27 3.18
997 1000 3.554692 CAACGCCGTCCTCATCGC 61.555 66.667 0.00 0.00 0.00 4.58
1033 1036 1.751924 GAGGATAAGCACTGAGACGGT 59.248 52.381 0.00 0.00 0.00 4.83
1484 1521 4.500116 GGCGCAGGAGACGGTCTC 62.500 72.222 26.28 26.28 42.66 3.36
1561 1598 2.046023 TTCCGGCCGTAGACGAGA 60.046 61.111 26.12 9.36 43.02 4.04
1795 1832 1.004560 CTTGCGCCTCAGGAAGTCA 60.005 57.895 4.18 0.00 35.28 3.41
1841 1878 3.444805 GCCGTCGAGCTCCACTCT 61.445 66.667 8.47 0.00 43.85 3.24
2104 2141 3.546271 CGCCGACGTATATAATGTGGATG 59.454 47.826 0.00 0.00 33.53 3.51
2247 2293 3.609175 CGCCATGACTTTACACCACAAAG 60.609 47.826 0.00 0.00 38.65 2.77
2269 2315 3.815401 AGGCAAAAGTATGTCTGACACAC 59.185 43.478 13.50 12.24 38.04 3.82
2298 2344 2.420372 TGCGTCTGTGCTGTGTTAAAAA 59.580 40.909 0.00 0.00 35.36 1.94
2299 2345 2.010497 TGCGTCTGTGCTGTGTTAAAA 58.990 42.857 0.00 0.00 35.36 1.52
2300 2346 1.657822 TGCGTCTGTGCTGTGTTAAA 58.342 45.000 0.00 0.00 35.36 1.52
2301 2347 1.597195 CTTGCGTCTGTGCTGTGTTAA 59.403 47.619 0.00 0.00 35.36 2.01
2302 2348 1.217001 CTTGCGTCTGTGCTGTGTTA 58.783 50.000 0.00 0.00 35.36 2.41
2303 2349 2.016961 CTTGCGTCTGTGCTGTGTT 58.983 52.632 0.00 0.00 35.36 3.32
2304 2350 2.537560 GCTTGCGTCTGTGCTGTGT 61.538 57.895 0.00 0.00 35.36 3.72
2305 2351 2.250485 GCTTGCGTCTGTGCTGTG 59.750 61.111 0.00 0.00 35.36 3.66
2306 2352 3.341043 CGCTTGCGTCTGTGCTGT 61.341 61.111 6.86 0.00 35.36 4.40
2307 2353 4.731503 GCGCTTGCGTCTGTGCTG 62.732 66.667 16.38 0.00 36.83 4.41
2308 2354 4.976925 AGCGCTTGCGTCTGTGCT 62.977 61.111 16.38 6.05 45.69 4.40
2309 2355 4.436448 GAGCGCTTGCGTCTGTGC 62.436 66.667 13.26 0.00 45.69 4.57
2310 2356 4.126390 CGAGCGCTTGCGTCTGTG 62.126 66.667 13.26 5.66 45.69 3.66
2311 2357 2.543687 ATACGAGCGCTTGCGTCTGT 62.544 55.000 24.96 11.65 45.69 3.41
2312 2358 0.591488 TATACGAGCGCTTGCGTCTG 60.591 55.000 24.96 6.42 45.69 3.51
2313 2359 0.311165 ATATACGAGCGCTTGCGTCT 59.689 50.000 24.96 18.45 45.69 4.18
2314 2360 1.642843 GTATATACGAGCGCTTGCGTC 59.357 52.381 24.96 9.08 45.69 5.19
2315 2361 1.682982 GTATATACGAGCGCTTGCGT 58.317 50.000 24.68 24.68 45.69 5.24
2327 2373 3.850273 GGTGAGTGTATGCGCGTATATAC 59.150 47.826 27.91 27.91 0.00 1.47
2328 2374 3.119743 GGGTGAGTGTATGCGCGTATATA 60.120 47.826 19.79 14.59 0.00 0.86
2329 2375 2.352421 GGGTGAGTGTATGCGCGTATAT 60.352 50.000 19.79 4.31 0.00 0.86
2330 2376 1.001048 GGGTGAGTGTATGCGCGTATA 60.001 52.381 13.13 13.13 0.00 1.47
2331 2377 0.249322 GGGTGAGTGTATGCGCGTAT 60.249 55.000 15.52 15.52 0.00 3.06
2332 2378 1.140161 GGGTGAGTGTATGCGCGTA 59.860 57.895 8.43 4.92 0.00 4.42
2333 2379 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
2334 2380 0.179121 TAAGGGTGAGTGTATGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
2335 2381 1.867233 CATAAGGGTGAGTGTATGCGC 59.133 52.381 0.00 0.00 0.00 6.09
2336 2382 3.452755 TCATAAGGGTGAGTGTATGCG 57.547 47.619 0.00 0.00 0.00 4.73
2337 2383 3.555956 CGTTCATAAGGGTGAGTGTATGC 59.444 47.826 0.00 0.00 0.00 3.14
2338 2384 3.555956 GCGTTCATAAGGGTGAGTGTATG 59.444 47.826 0.00 0.00 0.00 2.39
2339 2385 3.196901 TGCGTTCATAAGGGTGAGTGTAT 59.803 43.478 0.00 0.00 0.00 2.29
2340 2386 2.563620 TGCGTTCATAAGGGTGAGTGTA 59.436 45.455 0.00 0.00 0.00 2.90
2341 2387 1.346395 TGCGTTCATAAGGGTGAGTGT 59.654 47.619 0.00 0.00 0.00 3.55
2342 2388 1.732259 GTGCGTTCATAAGGGTGAGTG 59.268 52.381 0.00 0.00 0.00 3.51
2343 2389 1.346395 TGTGCGTTCATAAGGGTGAGT 59.654 47.619 0.00 0.00 0.00 3.41
2344 2390 1.732259 GTGTGCGTTCATAAGGGTGAG 59.268 52.381 0.00 0.00 0.00 3.51
2345 2391 1.070914 TGTGTGCGTTCATAAGGGTGA 59.929 47.619 0.00 0.00 0.00 4.02
2346 2392 1.196808 GTGTGTGCGTTCATAAGGGTG 59.803 52.381 0.00 0.00 0.00 4.61
2347 2393 1.519408 GTGTGTGCGTTCATAAGGGT 58.481 50.000 0.00 0.00 0.00 4.34
2348 2394 0.442310 CGTGTGTGCGTTCATAAGGG 59.558 55.000 0.00 0.00 0.00 3.95
2349 2395 0.179225 GCGTGTGTGCGTTCATAAGG 60.179 55.000 0.00 0.00 0.00 2.69
2350 2396 0.510790 TGCGTGTGTGCGTTCATAAG 59.489 50.000 0.00 0.00 37.81 1.73
2351 2397 0.233590 GTGCGTGTGTGCGTTCATAA 59.766 50.000 0.00 0.00 37.81 1.90
2352 2398 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
2353 2399 1.506309 ATGTGCGTGTGTGCGTTCAT 61.506 50.000 0.00 0.00 37.81 2.57
2354 2400 2.100024 GATGTGCGTGTGTGCGTTCA 62.100 55.000 0.00 0.00 37.81 3.18
2355 2401 1.438710 GATGTGCGTGTGTGCGTTC 60.439 57.895 0.00 0.00 37.81 3.95
2356 2402 2.631428 GATGTGCGTGTGTGCGTT 59.369 55.556 0.00 0.00 37.81 4.84
2357 2403 2.428960 TAGGATGTGCGTGTGTGCGT 62.429 55.000 0.00 0.00 37.81 5.24
2358 2404 1.736282 TAGGATGTGCGTGTGTGCG 60.736 57.895 0.00 0.00 37.81 5.34
2359 2405 1.635663 GGTAGGATGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
2360 2406 1.019278 GGGTAGGATGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
2361 2407 1.192146 AGGGTAGGATGTGCGTGTGT 61.192 55.000 0.00 0.00 0.00 3.72
2362 2408 0.036388 AAGGGTAGGATGTGCGTGTG 60.036 55.000 0.00 0.00 0.00 3.82
2363 2409 1.563924 TAAGGGTAGGATGTGCGTGT 58.436 50.000 0.00 0.00 0.00 4.49
2364 2410 2.102420 TCATAAGGGTAGGATGTGCGTG 59.898 50.000 0.00 0.00 0.00 5.34
2365 2411 2.365617 CTCATAAGGGTAGGATGTGCGT 59.634 50.000 0.00 0.00 0.00 5.24
2366 2412 2.868044 GCTCATAAGGGTAGGATGTGCG 60.868 54.545 0.00 0.00 32.41 5.34
2367 2413 2.104792 TGCTCATAAGGGTAGGATGTGC 59.895 50.000 0.00 0.00 39.41 4.57
2368 2414 3.134623 TGTGCTCATAAGGGTAGGATGTG 59.865 47.826 0.00 0.00 0.00 3.21
2369 2415 3.384168 TGTGCTCATAAGGGTAGGATGT 58.616 45.455 0.00 0.00 0.00 3.06
2370 2416 4.564406 GGATGTGCTCATAAGGGTAGGATG 60.564 50.000 0.32 0.00 34.06 3.51
2371 2417 3.584848 GGATGTGCTCATAAGGGTAGGAT 59.415 47.826 0.32 0.00 34.06 3.24
2372 2418 2.972713 GGATGTGCTCATAAGGGTAGGA 59.027 50.000 0.32 0.00 34.06 2.94
2373 2419 2.289072 CGGATGTGCTCATAAGGGTAGG 60.289 54.545 0.32 0.00 34.06 3.18
2374 2420 2.628178 TCGGATGTGCTCATAAGGGTAG 59.372 50.000 0.32 0.00 34.06 3.18
2375 2421 2.628178 CTCGGATGTGCTCATAAGGGTA 59.372 50.000 0.32 0.00 34.06 3.69
2376 2422 1.414181 CTCGGATGTGCTCATAAGGGT 59.586 52.381 0.32 0.00 34.06 4.34
2377 2423 1.688735 TCTCGGATGTGCTCATAAGGG 59.311 52.381 0.32 0.00 34.06 3.95
2378 2424 2.625314 TCTCTCGGATGTGCTCATAAGG 59.375 50.000 0.32 0.00 34.06 2.69
2379 2425 3.317711 AGTCTCTCGGATGTGCTCATAAG 59.682 47.826 0.32 0.74 34.06 1.73
2380 2426 3.067320 CAGTCTCTCGGATGTGCTCATAA 59.933 47.826 0.32 0.00 34.06 1.90
2381 2427 2.620585 CAGTCTCTCGGATGTGCTCATA 59.379 50.000 0.32 0.00 34.06 2.15
2382 2428 1.408340 CAGTCTCTCGGATGTGCTCAT 59.592 52.381 0.00 0.00 36.95 2.90
2383 2429 0.813821 CAGTCTCTCGGATGTGCTCA 59.186 55.000 0.00 0.00 0.00 4.26
2384 2430 1.065401 CTCAGTCTCTCGGATGTGCTC 59.935 57.143 0.00 0.00 0.00 4.26
2385 2431 1.102154 CTCAGTCTCTCGGATGTGCT 58.898 55.000 0.00 0.00 0.00 4.40
2386 2432 0.527385 GCTCAGTCTCTCGGATGTGC 60.527 60.000 0.00 0.00 0.00 4.57
2387 2433 0.102120 GGCTCAGTCTCTCGGATGTG 59.898 60.000 0.00 0.00 0.00 3.21
2388 2434 1.380403 CGGCTCAGTCTCTCGGATGT 61.380 60.000 0.00 0.00 0.00 3.06
2389 2435 1.098129 TCGGCTCAGTCTCTCGGATG 61.098 60.000 0.00 0.00 0.00 3.51
2390 2436 1.098712 GTCGGCTCAGTCTCTCGGAT 61.099 60.000 0.00 0.00 0.00 4.18
2391 2437 1.745864 GTCGGCTCAGTCTCTCGGA 60.746 63.158 0.00 0.00 0.00 4.55
2392 2438 1.380403 ATGTCGGCTCAGTCTCTCGG 61.380 60.000 0.00 0.00 0.00 4.63
2393 2439 1.300481 TATGTCGGCTCAGTCTCTCG 58.700 55.000 0.00 0.00 0.00 4.04
2394 2440 2.881513 TGATATGTCGGCTCAGTCTCTC 59.118 50.000 0.00 0.00 0.00 3.20
2395 2441 2.937519 TGATATGTCGGCTCAGTCTCT 58.062 47.619 0.00 0.00 0.00 3.10
2396 2442 3.932545 ATGATATGTCGGCTCAGTCTC 57.067 47.619 0.00 0.00 0.00 3.36
2397 2443 5.478332 TCAATATGATATGTCGGCTCAGTCT 59.522 40.000 0.00 0.00 0.00 3.24
2398 2444 5.714047 TCAATATGATATGTCGGCTCAGTC 58.286 41.667 0.00 0.00 0.00 3.51
2399 2445 5.478332 TCTCAATATGATATGTCGGCTCAGT 59.522 40.000 0.00 0.00 0.00 3.41
2400 2446 5.958955 TCTCAATATGATATGTCGGCTCAG 58.041 41.667 0.00 0.00 0.00 3.35
2401 2447 5.982890 TCTCAATATGATATGTCGGCTCA 57.017 39.130 0.00 0.00 0.00 4.26
2402 2448 7.840342 AAATCTCAATATGATATGTCGGCTC 57.160 36.000 0.00 0.00 0.00 4.70
2403 2449 9.155975 GTAAAATCTCAATATGATATGTCGGCT 57.844 33.333 0.00 0.00 0.00 5.52
2404 2450 8.110612 CGTAAAATCTCAATATGATATGTCGGC 58.889 37.037 0.00 0.00 0.00 5.54
2405 2451 9.353999 TCGTAAAATCTCAATATGATATGTCGG 57.646 33.333 0.00 0.00 0.00 4.79
2412 2458 9.046296 GGTGACTTCGTAAAATCTCAATATGAT 57.954 33.333 0.00 0.00 0.00 2.45
2413 2459 7.222031 CGGTGACTTCGTAAAATCTCAATATGA 59.778 37.037 0.00 0.00 0.00 2.15
2414 2460 7.010183 ACGGTGACTTCGTAAAATCTCAATATG 59.990 37.037 0.00 0.00 39.22 1.78
2415 2461 7.039882 ACGGTGACTTCGTAAAATCTCAATAT 58.960 34.615 0.00 0.00 39.22 1.28
2416 2462 6.392354 ACGGTGACTTCGTAAAATCTCAATA 58.608 36.000 0.00 0.00 39.22 1.90
2417 2463 5.235516 ACGGTGACTTCGTAAAATCTCAAT 58.764 37.500 0.00 0.00 39.22 2.57
2418 2464 4.624015 ACGGTGACTTCGTAAAATCTCAA 58.376 39.130 0.00 0.00 39.22 3.02
2419 2465 4.247267 ACGGTGACTTCGTAAAATCTCA 57.753 40.909 0.00 0.00 39.22 3.27
2420 2466 5.511025 GTCTACGGTGACTTCGTAAAATCTC 59.489 44.000 0.00 0.00 41.62 2.75
2421 2467 5.397326 GTCTACGGTGACTTCGTAAAATCT 58.603 41.667 0.00 0.00 41.62 2.40
2422 2468 4.261581 CGTCTACGGTGACTTCGTAAAATC 59.738 45.833 8.11 0.00 41.62 2.17
2423 2469 4.161333 CGTCTACGGTGACTTCGTAAAAT 58.839 43.478 8.11 0.00 41.62 1.82
2424 2470 3.554524 CGTCTACGGTGACTTCGTAAAA 58.445 45.455 8.11 0.00 41.62 1.52
2425 2471 2.665519 GCGTCTACGGTGACTTCGTAAA 60.666 50.000 4.49 0.00 41.62 2.01
2426 2472 1.135972 GCGTCTACGGTGACTTCGTAA 60.136 52.381 4.49 0.00 41.62 3.18
2427 2473 0.443869 GCGTCTACGGTGACTTCGTA 59.556 55.000 4.49 0.00 41.38 3.43
2428 2474 1.208614 GCGTCTACGGTGACTTCGT 59.791 57.895 4.49 0.00 43.64 3.85
2429 2475 1.513586 GGCGTCTACGGTGACTTCG 60.514 63.158 4.49 0.00 40.23 3.79
2430 2476 0.243095 AAGGCGTCTACGGTGACTTC 59.757 55.000 4.49 1.67 40.23 3.01
2431 2477 0.038526 CAAGGCGTCTACGGTGACTT 60.039 55.000 4.49 0.00 40.23 3.01
2432 2478 1.177256 ACAAGGCGTCTACGGTGACT 61.177 55.000 4.49 0.00 40.23 3.41
2433 2479 0.523072 TACAAGGCGTCTACGGTGAC 59.477 55.000 4.49 0.00 40.23 3.67
2434 2480 0.806868 CTACAAGGCGTCTACGGTGA 59.193 55.000 4.49 0.00 40.23 4.02
2435 2481 0.524862 ACTACAAGGCGTCTACGGTG 59.475 55.000 4.49 0.00 40.23 4.94
2436 2482 1.068055 CAACTACAAGGCGTCTACGGT 60.068 52.381 4.49 0.00 40.23 4.83
2437 2483 1.200716 TCAACTACAAGGCGTCTACGG 59.799 52.381 4.49 0.00 40.23 4.02
2438 2484 2.624316 TCAACTACAAGGCGTCTACG 57.376 50.000 0.00 0.00 43.27 3.51
2439 2485 3.119245 TCCATCAACTACAAGGCGTCTAC 60.119 47.826 0.00 0.00 0.00 2.59
2440 2486 3.093814 TCCATCAACTACAAGGCGTCTA 58.906 45.455 0.00 0.00 0.00 2.59
2441 2487 1.899814 TCCATCAACTACAAGGCGTCT 59.100 47.619 0.00 0.00 0.00 4.18
2442 2488 2.380084 TCCATCAACTACAAGGCGTC 57.620 50.000 0.00 0.00 0.00 5.19
2443 2489 2.812011 GTTTCCATCAACTACAAGGCGT 59.188 45.455 0.00 0.00 0.00 5.68
2444 2490 2.811431 TGTTTCCATCAACTACAAGGCG 59.189 45.455 0.00 0.00 0.00 5.52
2445 2491 4.986622 GATGTTTCCATCAACTACAAGGC 58.013 43.478 0.00 0.00 45.68 4.35
2456 2502 2.507471 AGTGGGAGGAGATGTTTCCATC 59.493 50.000 0.00 0.00 46.56 3.51
2457 2503 2.566746 AGTGGGAGGAGATGTTTCCAT 58.433 47.619 0.00 0.00 39.84 3.41
2458 2504 2.044793 AGTGGGAGGAGATGTTTCCA 57.955 50.000 0.00 0.00 39.84 3.53
2459 2505 4.262617 GTTTAGTGGGAGGAGATGTTTCC 58.737 47.826 0.00 0.00 37.52 3.13
2460 2506 3.933332 CGTTTAGTGGGAGGAGATGTTTC 59.067 47.826 0.00 0.00 0.00 2.78
2461 2507 3.868754 GCGTTTAGTGGGAGGAGATGTTT 60.869 47.826 0.00 0.00 0.00 2.83
2462 2508 2.354805 GCGTTTAGTGGGAGGAGATGTT 60.355 50.000 0.00 0.00 0.00 2.71
2463 2509 1.207329 GCGTTTAGTGGGAGGAGATGT 59.793 52.381 0.00 0.00 0.00 3.06
2464 2510 1.207089 TGCGTTTAGTGGGAGGAGATG 59.793 52.381 0.00 0.00 0.00 2.90
2465 2511 1.568504 TGCGTTTAGTGGGAGGAGAT 58.431 50.000 0.00 0.00 0.00 2.75
2466 2512 1.207089 CATGCGTTTAGTGGGAGGAGA 59.793 52.381 0.00 0.00 0.00 3.71
2467 2513 1.066143 ACATGCGTTTAGTGGGAGGAG 60.066 52.381 0.00 0.00 0.00 3.69
2468 2514 0.981183 ACATGCGTTTAGTGGGAGGA 59.019 50.000 0.00 0.00 0.00 3.71
2469 2515 1.338674 TGACATGCGTTTAGTGGGAGG 60.339 52.381 0.00 0.00 0.00 4.30
2470 2516 1.732259 GTGACATGCGTTTAGTGGGAG 59.268 52.381 0.00 0.00 0.00 4.30
2471 2517 1.609580 GGTGACATGCGTTTAGTGGGA 60.610 52.381 0.00 0.00 0.00 4.37
2472 2518 0.802494 GGTGACATGCGTTTAGTGGG 59.198 55.000 0.00 0.00 0.00 4.61
2473 2519 0.442310 CGGTGACATGCGTTTAGTGG 59.558 55.000 0.00 0.00 0.00 4.00
2474 2520 0.442310 CCGGTGACATGCGTTTAGTG 59.558 55.000 0.00 0.00 0.00 2.74
2475 2521 0.319083 TCCGGTGACATGCGTTTAGT 59.681 50.000 0.00 0.00 0.00 2.24
2476 2522 1.434555 TTCCGGTGACATGCGTTTAG 58.565 50.000 0.00 0.00 0.00 1.85
2477 2523 2.102070 ATTCCGGTGACATGCGTTTA 57.898 45.000 0.00 0.00 0.00 2.01
2478 2524 1.243902 AATTCCGGTGACATGCGTTT 58.756 45.000 0.00 0.00 0.00 3.60
2479 2525 1.199097 GAAATTCCGGTGACATGCGTT 59.801 47.619 0.00 0.00 0.00 4.84
2480 2526 0.802494 GAAATTCCGGTGACATGCGT 59.198 50.000 0.00 0.00 0.00 5.24
2481 2527 1.086696 AGAAATTCCGGTGACATGCG 58.913 50.000 0.00 0.00 0.00 4.73
2482 2528 2.083774 TCAGAAATTCCGGTGACATGC 58.916 47.619 0.00 0.00 0.00 4.06
2483 2529 4.764679 TTTCAGAAATTCCGGTGACATG 57.235 40.909 0.00 0.00 0.00 3.21
2484 2530 7.461182 TTTATTTCAGAAATTCCGGTGACAT 57.539 32.000 13.71 0.00 32.38 3.06
2485 2531 6.885952 TTTATTTCAGAAATTCCGGTGACA 57.114 33.333 13.71 0.00 32.38 3.58
2486 2532 6.972901 GGATTTATTTCAGAAATTCCGGTGAC 59.027 38.462 13.71 0.00 32.38 3.67
2487 2533 6.661377 TGGATTTATTTCAGAAATTCCGGTGA 59.339 34.615 13.71 0.00 32.38 4.02
2488 2534 6.862209 TGGATTTATTTCAGAAATTCCGGTG 58.138 36.000 13.71 0.00 32.38 4.94
2489 2535 6.096846 CCTGGATTTATTTCAGAAATTCCGGT 59.903 38.462 22.17 6.13 32.38 5.28
2490 2536 6.321181 TCCTGGATTTATTTCAGAAATTCCGG 59.679 38.462 19.35 19.35 32.38 5.14
2491 2537 7.333528 TCCTGGATTTATTTCAGAAATTCCG 57.666 36.000 13.71 10.38 32.38 4.30
2497 2543 8.352201 CGCATTTATCCTGGATTTATTTCAGAA 58.648 33.333 15.55 0.00 0.00 3.02
2498 2544 7.719193 TCGCATTTATCCTGGATTTATTTCAGA 59.281 33.333 15.55 3.34 0.00 3.27
2499 2545 7.874940 TCGCATTTATCCTGGATTTATTTCAG 58.125 34.615 15.55 1.04 0.00 3.02
2500 2546 7.522073 GCTCGCATTTATCCTGGATTTATTTCA 60.522 37.037 15.55 0.00 0.00 2.69
2501 2547 6.803807 GCTCGCATTTATCCTGGATTTATTTC 59.196 38.462 15.55 0.09 0.00 2.17
2502 2548 6.265196 TGCTCGCATTTATCCTGGATTTATTT 59.735 34.615 15.55 0.00 0.00 1.40
2503 2549 5.769662 TGCTCGCATTTATCCTGGATTTATT 59.230 36.000 15.55 0.00 0.00 1.40
2504 2550 5.182001 GTGCTCGCATTTATCCTGGATTTAT 59.818 40.000 15.55 5.99 0.00 1.40
2505 2551 4.515191 GTGCTCGCATTTATCCTGGATTTA 59.485 41.667 15.55 3.70 0.00 1.40
2506 2552 3.316308 GTGCTCGCATTTATCCTGGATTT 59.684 43.478 15.55 0.00 0.00 2.17
2507 2553 2.880890 GTGCTCGCATTTATCCTGGATT 59.119 45.455 15.55 0.00 0.00 3.01
2508 2554 2.498167 GTGCTCGCATTTATCCTGGAT 58.502 47.619 14.66 14.66 0.00 3.41
2509 2555 1.475034 GGTGCTCGCATTTATCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
2510 2556 0.947244 GGTGCTCGCATTTATCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
2511 2557 1.667236 TGGTGCTCGCATTTATCCTG 58.333 50.000 0.00 0.00 0.00 3.86
2512 2558 2.092968 TCTTGGTGCTCGCATTTATCCT 60.093 45.455 0.00 0.00 0.00 3.24
2513 2559 2.288666 TCTTGGTGCTCGCATTTATCC 58.711 47.619 0.00 0.00 0.00 2.59
2514 2560 4.035558 TCAATCTTGGTGCTCGCATTTATC 59.964 41.667 0.00 0.00 0.00 1.75
2515 2561 3.947196 TCAATCTTGGTGCTCGCATTTAT 59.053 39.130 0.00 0.00 0.00 1.40
2516 2562 3.342719 TCAATCTTGGTGCTCGCATTTA 58.657 40.909 0.00 0.00 0.00 1.40
2517 2563 2.161855 TCAATCTTGGTGCTCGCATTT 58.838 42.857 0.00 0.00 0.00 2.32
2518 2564 1.825090 TCAATCTTGGTGCTCGCATT 58.175 45.000 0.00 0.00 0.00 3.56
2519 2565 1.470098 GTTCAATCTTGGTGCTCGCAT 59.530 47.619 0.00 0.00 0.00 4.73
2520 2566 0.874390 GTTCAATCTTGGTGCTCGCA 59.126 50.000 0.00 0.00 0.00 5.10
2521 2567 0.169009 GGTTCAATCTTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
2522 2568 0.804989 GGGTTCAATCTTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
2523 2569 1.815003 CAGGGTTCAATCTTGGTGCTC 59.185 52.381 0.00 0.00 0.00 4.26
2524 2570 1.425066 TCAGGGTTCAATCTTGGTGCT 59.575 47.619 0.00 0.00 0.00 4.40
2525 2571 1.909700 TCAGGGTTCAATCTTGGTGC 58.090 50.000 0.00 0.00 0.00 5.01
2526 2572 2.756760 CCATCAGGGTTCAATCTTGGTG 59.243 50.000 0.00 0.00 0.00 4.17
2527 2573 3.091633 CCATCAGGGTTCAATCTTGGT 57.908 47.619 0.00 0.00 0.00 3.67
2540 2586 1.004044 GTGATATCCCAGCCCATCAGG 59.996 57.143 0.00 0.00 39.47 3.86
2541 2587 1.701292 TGTGATATCCCAGCCCATCAG 59.299 52.381 0.00 0.00 0.00 2.90
2542 2588 1.701292 CTGTGATATCCCAGCCCATCA 59.299 52.381 2.06 0.00 0.00 3.07
2543 2589 1.701847 ACTGTGATATCCCAGCCCATC 59.298 52.381 14.34 0.00 31.76 3.51
2544 2590 1.701847 GACTGTGATATCCCAGCCCAT 59.298 52.381 14.34 0.00 31.76 4.00
2545 2591 1.131638 GACTGTGATATCCCAGCCCA 58.868 55.000 14.34 0.00 31.76 5.36
2546 2592 0.398318 GGACTGTGATATCCCAGCCC 59.602 60.000 14.34 9.72 31.76 5.19
2547 2593 1.131638 TGGACTGTGATATCCCAGCC 58.868 55.000 14.34 15.47 33.69 4.85
2548 2594 2.636893 AGATGGACTGTGATATCCCAGC 59.363 50.000 14.34 9.61 33.69 4.85
2549 2595 5.279708 GGTTAGATGGACTGTGATATCCCAG 60.280 48.000 13.02 13.02 33.69 4.45
2550 2596 4.593206 GGTTAGATGGACTGTGATATCCCA 59.407 45.833 0.00 0.00 33.69 4.37
2551 2597 4.593206 TGGTTAGATGGACTGTGATATCCC 59.407 45.833 0.00 0.00 33.69 3.85
2552 2598 5.808366 TGGTTAGATGGACTGTGATATCC 57.192 43.478 0.00 0.00 35.37 2.59
2553 2599 6.014242 TGGATGGTTAGATGGACTGTGATATC 60.014 42.308 0.00 0.00 0.00 1.63
2554 2600 5.846164 TGGATGGTTAGATGGACTGTGATAT 59.154 40.000 0.00 0.00 0.00 1.63
2555 2601 5.215845 TGGATGGTTAGATGGACTGTGATA 58.784 41.667 0.00 0.00 0.00 2.15
2556 2602 4.040047 TGGATGGTTAGATGGACTGTGAT 58.960 43.478 0.00 0.00 0.00 3.06
2557 2603 3.449918 TGGATGGTTAGATGGACTGTGA 58.550 45.455 0.00 0.00 0.00 3.58
2558 2604 3.912496 TGGATGGTTAGATGGACTGTG 57.088 47.619 0.00 0.00 0.00 3.66
2559 2605 3.054361 GGTTGGATGGTTAGATGGACTGT 60.054 47.826 0.00 0.00 0.00 3.55
2560 2606 3.054434 TGGTTGGATGGTTAGATGGACTG 60.054 47.826 0.00 0.00 0.00 3.51
2561 2607 3.054361 GTGGTTGGATGGTTAGATGGACT 60.054 47.826 0.00 0.00 0.00 3.85
2562 2608 3.279434 GTGGTTGGATGGTTAGATGGAC 58.721 50.000 0.00 0.00 0.00 4.02
2563 2609 2.916269 TGTGGTTGGATGGTTAGATGGA 59.084 45.455 0.00 0.00 0.00 3.41
2564 2610 3.364460 TGTGGTTGGATGGTTAGATGG 57.636 47.619 0.00 0.00 0.00 3.51
2565 2611 4.335416 ACTTGTGGTTGGATGGTTAGATG 58.665 43.478 0.00 0.00 0.00 2.90
2566 2612 4.657814 ACTTGTGGTTGGATGGTTAGAT 57.342 40.909 0.00 0.00 0.00 1.98
2567 2613 4.447138 AACTTGTGGTTGGATGGTTAGA 57.553 40.909 0.00 0.00 36.70 2.10
2581 2627 2.192624 CAAAAGGCGAACCAACTTGTG 58.807 47.619 0.00 0.00 39.06 3.33
2582 2628 1.470805 GCAAAAGGCGAACCAACTTGT 60.471 47.619 0.00 0.00 39.06 3.16
2583 2629 1.208259 GCAAAAGGCGAACCAACTTG 58.792 50.000 0.00 0.00 39.06 3.16
2584 2630 0.104120 GGCAAAAGGCGAACCAACTT 59.896 50.000 0.00 0.00 46.16 2.66
2585 2631 0.755327 AGGCAAAAGGCGAACCAACT 60.755 50.000 0.00 0.00 46.16 3.16
2586 2632 0.104120 AAGGCAAAAGGCGAACCAAC 59.896 50.000 0.00 0.00 46.16 3.77
2587 2633 0.387565 GAAGGCAAAAGGCGAACCAA 59.612 50.000 0.00 0.00 46.16 3.67
2588 2634 1.460273 GGAAGGCAAAAGGCGAACCA 61.460 55.000 0.00 0.00 46.16 3.67
2589 2635 1.289066 GGAAGGCAAAAGGCGAACC 59.711 57.895 0.00 0.00 46.16 3.62
2590 2636 0.603065 ATGGAAGGCAAAAGGCGAAC 59.397 50.000 0.00 0.00 46.16 3.95
2591 2637 1.000731 CAATGGAAGGCAAAAGGCGAA 59.999 47.619 0.00 0.00 46.16 4.70
2592 2638 0.602562 CAATGGAAGGCAAAAGGCGA 59.397 50.000 0.00 0.00 46.16 5.54
2593 2639 0.602562 TCAATGGAAGGCAAAAGGCG 59.397 50.000 0.00 0.00 46.16 5.52
2594 2640 3.004862 CAATCAATGGAAGGCAAAAGGC 58.995 45.455 0.00 0.00 43.74 4.35
2607 2653 3.566742 TCATTCATCGGCTCCAATCAATG 59.433 43.478 0.00 0.00 0.00 2.82
2608 2654 3.824133 TCATTCATCGGCTCCAATCAAT 58.176 40.909 0.00 0.00 0.00 2.57
2612 2658 3.784511 AGATCATTCATCGGCTCCAAT 57.215 42.857 0.00 0.00 36.50 3.16
2640 2686 7.283580 TGGGTAATTCGAAAAGAGAAAAAGACA 59.716 33.333 0.00 0.00 0.00 3.41
2643 2689 8.865590 TTTGGGTAATTCGAAAAGAGAAAAAG 57.134 30.769 0.00 0.00 0.00 2.27
2756 2802 5.393068 AGGGCTCCTTGATTGAAATCATA 57.607 39.130 6.56 0.00 44.27 2.15
2783 3759 1.147153 GCCTAGCACCAGTCATCCC 59.853 63.158 0.00 0.00 0.00 3.85
2796 3772 0.872021 GATCAACCGACGCTGCCTAG 60.872 60.000 0.00 0.00 0.00 3.02
2802 3778 1.226974 CGATGGATCAACCGACGCT 60.227 57.895 0.00 0.00 42.61 5.07
2825 3801 7.520776 CGACCTCACATAAGAAGACTATAGTGG 60.521 44.444 10.90 2.88 0.00 4.00
2832 3808 3.697045 CCTCGACCTCACATAAGAAGACT 59.303 47.826 0.00 0.00 0.00 3.24
2854 3830 5.700373 GGATGAGAAGCAAGGATTAGATGAC 59.300 44.000 0.00 0.00 0.00 3.06
2857 3833 5.605908 TCAGGATGAGAAGCAAGGATTAGAT 59.394 40.000 0.00 0.00 42.56 1.98
2888 3864 5.213868 TGAAGGAGAAGATAAGGAGGACT 57.786 43.478 0.00 0.00 0.00 3.85
2889 3865 5.365314 ACATGAAGGAGAAGATAAGGAGGAC 59.635 44.000 0.00 0.00 0.00 3.85
2909 3885 0.321671 ACCGGGAGTGACAAGACATG 59.678 55.000 6.32 0.00 0.00 3.21
2969 3945 5.573282 GGTGTCATATCCTCATTATCGAACG 59.427 44.000 0.00 0.00 0.00 3.95
2975 3951 4.018960 GCCCAGGTGTCATATCCTCATTAT 60.019 45.833 0.00 0.00 30.91 1.28
2985 3961 1.886422 TGGTATGCCCAGGTGTCATA 58.114 50.000 0.00 0.00 38.72 2.15
3047 4023 2.956964 GCTCGAATGGCCGACTCG 60.957 66.667 13.20 13.20 34.56 4.18
3068 4044 0.685097 TTCCTTGTCTCCGAGGTTGG 59.315 55.000 0.00 0.00 42.29 3.77
3069 4045 1.941668 GCTTCCTTGTCTCCGAGGTTG 60.942 57.143 0.00 0.00 42.29 3.77
3070 4046 0.321996 GCTTCCTTGTCTCCGAGGTT 59.678 55.000 0.00 0.00 42.29 3.50
3071 4047 0.832135 TGCTTCCTTGTCTCCGAGGT 60.832 55.000 0.00 0.00 42.29 3.85
3072 4048 0.108424 CTGCTTCCTTGTCTCCGAGG 60.108 60.000 0.00 0.00 42.95 4.63
3073 4049 0.891373 TCTGCTTCCTTGTCTCCGAG 59.109 55.000 0.00 0.00 0.00 4.63
3074 4050 1.338107 TTCTGCTTCCTTGTCTCCGA 58.662 50.000 0.00 0.00 0.00 4.55
3075 4051 2.072298 CTTTCTGCTTCCTTGTCTCCG 58.928 52.381 0.00 0.00 0.00 4.63
3076 4052 1.809547 GCTTTCTGCTTCCTTGTCTCC 59.190 52.381 0.00 0.00 38.95 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.