Multiple sequence alignment - TraesCS2B01G251300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G251300 chr2B 100.000 7628 0 0 933 8560 262906338 262898711 0.000000e+00 14087.0
1 TraesCS2B01G251300 chr2B 95.829 1055 38 4 3732 4782 694689238 694690290 0.000000e+00 1700.0
2 TraesCS2B01G251300 chr2B 100.000 569 0 0 1 569 262907270 262906702 0.000000e+00 1051.0
3 TraesCS2B01G251300 chr2B 93.519 108 5 2 1858 1963 234630695 234630588 8.890000e-35 159.0
4 TraesCS2B01G251300 chr2B 92.661 109 6 2 5001 5108 151658517 151658624 1.150000e-33 156.0
5 TraesCS2B01G251300 chr2B 92.661 109 6 2 1861 1968 476399519 476399412 1.150000e-33 156.0
6 TraesCS2B01G251300 chr2D 95.298 3169 85 23 5447 8560 208539443 208536284 0.000000e+00 4968.0
7 TraesCS2B01G251300 chr2D 96.303 1190 26 7 1992 3178 208541611 208540437 0.000000e+00 1938.0
8 TraesCS2B01G251300 chr2D 95.938 640 25 1 1196 1835 208542318 208541680 0.000000e+00 1037.0
9 TraesCS2B01G251300 chr2D 98.701 385 5 0 5097 5481 208539823 208539439 0.000000e+00 684.0
10 TraesCS2B01G251300 chr2D 95.782 403 11 4 3335 3732 208540439 208540038 0.000000e+00 645.0
11 TraesCS2B01G251300 chr2D 86.644 584 17 11 6 569 208543260 208542718 2.660000e-164 590.0
12 TraesCS2B01G251300 chr2D 97.368 266 4 1 933 1195 208542620 208542355 4.710000e-122 449.0
13 TraesCS2B01G251300 chr2D 97.357 227 3 2 4781 5005 208540045 208539820 4.850000e-102 383.0
14 TraesCS2B01G251300 chr2D 96.552 87 1 2 3542 3628 13478711 13478795 8.960000e-30 143.0
15 TraesCS2B01G251300 chr2A 93.407 1623 47 7 6242 7839 261173540 261171953 0.000000e+00 2350.0
16 TraesCS2B01G251300 chr2A 95.842 938 29 3 1984 2911 261183397 261182460 0.000000e+00 1507.0
17 TraesCS2B01G251300 chr2A 93.243 962 40 14 5098 6057 261174667 261173729 0.000000e+00 1393.0
18 TraesCS2B01G251300 chr2A 96.719 640 21 0 1196 1835 261184118 261183479 0.000000e+00 1066.0
19 TraesCS2B01G251300 chr2A 91.111 630 41 9 2926 3544 261175582 261174957 0.000000e+00 839.0
20 TraesCS2B01G251300 chr2A 91.636 538 28 6 21 554 261185025 261184501 0.000000e+00 728.0
21 TraesCS2B01G251300 chr2A 92.262 336 19 2 7856 8184 261171968 261171633 3.620000e-128 470.0
22 TraesCS2B01G251300 chr2A 95.817 263 5 4 933 1195 261184411 261184155 3.700000e-113 420.0
23 TraesCS2B01G251300 chr2A 85.714 336 28 10 8242 8560 261171153 261170821 3.830000e-88 337.0
24 TraesCS2B01G251300 chr2A 95.333 150 6 1 4859 5008 261174816 261174668 3.990000e-58 237.0
25 TraesCS2B01G251300 chr2A 92.437 119 3 2 6054 6166 261173702 261173584 1.910000e-36 165.0
26 TraesCS2B01G251300 chr2A 94.231 104 6 0 4997 5100 619208135 619208032 8.890000e-35 159.0
27 TraesCS2B01G251300 chr2A 95.506 89 2 2 3542 3630 632952909 632952995 3.220000e-29 141.0
28 TraesCS2B01G251300 chr2A 89.655 58 0 3 4781 4832 261174870 261174813 1.540000e-07 69.4
29 TraesCS2B01G251300 chr2A 100.000 31 0 0 5260 5290 261174472 261174442 3.340000e-04 58.4
30 TraesCS2B01G251300 chr5A 98.954 1052 11 0 3733 4784 504754267 504755318 0.000000e+00 1882.0
31 TraesCS2B01G251300 chr5A 95.455 88 2 2 3542 3629 560883477 560883392 1.160000e-28 139.0
32 TraesCS2B01G251300 chr7B 98.569 1048 14 1 3733 4780 94806119 94807165 0.000000e+00 1851.0
33 TraesCS2B01G251300 chr7B 93.578 109 5 2 1858 1964 367495845 367495737 2.470000e-35 161.0
34 TraesCS2B01G251300 chr7B 92.453 106 8 0 5001 5106 460601749 460601644 1.490000e-32 152.0
35 TraesCS2B01G251300 chr4B 98.478 1051 13 2 3732 4780 409747864 409748913 0.000000e+00 1849.0
36 TraesCS2B01G251300 chr3A 98.475 1049 16 0 3732 4780 606378603 606377555 0.000000e+00 1849.0
37 TraesCS2B01G251300 chr3A 95.455 88 2 2 3542 3629 657439698 657439783 1.160000e-28 139.0
38 TraesCS2B01G251300 chr4A 98.190 1050 17 2 3732 4780 137545890 137546938 0.000000e+00 1832.0
39 TraesCS2B01G251300 chr4A 93.519 108 6 1 1858 1964 733754172 733754065 8.890000e-35 159.0
40 TraesCS2B01G251300 chr4A 87.692 130 11 5 1858 1985 700735772 700735898 6.920000e-31 147.0
41 TraesCS2B01G251300 chr5B 96.562 1047 33 2 3732 4778 498880361 498881404 0.000000e+00 1731.0
42 TraesCS2B01G251300 chr5B 96.004 1051 36 4 3732 4780 541073452 541072406 0.000000e+00 1703.0
43 TraesCS2B01G251300 chr5B 96.004 1051 35 5 3733 4780 492405328 492404282 0.000000e+00 1701.0
44 TraesCS2B01G251300 chr5B 91.964 112 6 3 1858 1967 38837285 38837175 4.140000e-33 154.0
45 TraesCS2B01G251300 chr1B 94.286 105 6 0 4996 5100 19070093 19070197 2.470000e-35 161.0
46 TraesCS2B01G251300 chr1B 96.875 32 1 0 6054 6085 526564620 526564589 4.000000e-03 54.7
47 TraesCS2B01G251300 chr3D 93.519 108 6 1 4997 5103 404291681 404291574 8.890000e-35 159.0
48 TraesCS2B01G251300 chr3D 93.519 108 6 1 1858 1964 520444533 520444640 8.890000e-35 159.0
49 TraesCS2B01G251300 chr3D 94.505 91 3 2 3542 3632 302930471 302930383 1.160000e-28 139.0
50 TraesCS2B01G251300 chr3D 92.105 38 2 1 6054 6090 604391439 604391402 1.600000e-02 52.8
51 TraesCS2B01G251300 chr1D 94.231 104 6 0 4997 5100 420554645 420554542 8.890000e-35 159.0
52 TraesCS2B01G251300 chr3B 93.396 106 7 0 4996 5101 794347680 794347575 3.200000e-34 158.0
53 TraesCS2B01G251300 chr3B 94.505 91 5 0 3541 3631 62394193 62394283 3.220000e-29 141.0
54 TraesCS2B01G251300 chr7D 91.304 115 8 2 4987 5100 105999788 105999675 1.150000e-33 156.0
55 TraesCS2B01G251300 chr7D 92.308 39 2 1 6054 6091 64704713 64704675 4.000000e-03 54.7
56 TraesCS2B01G251300 chr5D 91.964 112 7 2 5001 5111 500862448 500862558 1.150000e-33 156.0
57 TraesCS2B01G251300 chr6B 91.228 114 8 2 1858 1969 85727702 85727589 4.140000e-33 154.0
58 TraesCS2B01G251300 chr6B 89.831 118 10 2 1860 1976 489840457 489840341 5.350000e-32 150.0
59 TraesCS2B01G251300 chr1A 96.591 88 1 2 3542 3629 527084015 527083930 2.490000e-30 145.0
60 TraesCS2B01G251300 chr6A 95.455 88 2 2 3542 3629 508000862 508000947 1.160000e-28 139.0
61 TraesCS2B01G251300 chr7A 96.970 33 1 0 6051 6083 731394781 731394813 1.000000e-03 56.5
62 TraesCS2B01G251300 chr7A 92.308 39 2 1 6054 6091 68881131 68881093 4.000000e-03 54.7
63 TraesCS2B01G251300 chr6D 96.970 33 0 1 6051 6083 48675760 48675791 4.000000e-03 54.7
64 TraesCS2B01G251300 chr6D 92.308 39 2 1 6050 6088 259292258 259292295 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G251300 chr2B 262898711 262907270 8559 True 7569.000000 14087 100.000000 1 8560 2 chr2B.!!$R3 8559
1 TraesCS2B01G251300 chr2B 694689238 694690290 1052 False 1700.000000 1700 95.829000 3732 4782 1 chr2B.!!$F2 1050
2 TraesCS2B01G251300 chr2D 208536284 208543260 6976 True 1336.750000 4968 95.423875 6 8560 8 chr2D.!!$R1 8554
3 TraesCS2B01G251300 chr2A 261182460 261185025 2565 True 930.250000 1507 95.003500 21 2911 4 chr2A.!!$R3 2890
4 TraesCS2B01G251300 chr2A 261170821 261175582 4761 True 657.644444 2350 92.573556 2926 8560 9 chr2A.!!$R2 5634
5 TraesCS2B01G251300 chr5A 504754267 504755318 1051 False 1882.000000 1882 98.954000 3733 4784 1 chr5A.!!$F1 1051
6 TraesCS2B01G251300 chr7B 94806119 94807165 1046 False 1851.000000 1851 98.569000 3733 4780 1 chr7B.!!$F1 1047
7 TraesCS2B01G251300 chr4B 409747864 409748913 1049 False 1849.000000 1849 98.478000 3732 4780 1 chr4B.!!$F1 1048
8 TraesCS2B01G251300 chr3A 606377555 606378603 1048 True 1849.000000 1849 98.475000 3732 4780 1 chr3A.!!$R1 1048
9 TraesCS2B01G251300 chr4A 137545890 137546938 1048 False 1832.000000 1832 98.190000 3732 4780 1 chr4A.!!$F1 1048
10 TraesCS2B01G251300 chr5B 498880361 498881404 1043 False 1731.000000 1731 96.562000 3732 4778 1 chr5B.!!$F1 1046
11 TraesCS2B01G251300 chr5B 541072406 541073452 1046 True 1703.000000 1703 96.004000 3732 4780 1 chr5B.!!$R3 1048
12 TraesCS2B01G251300 chr5B 492404282 492405328 1046 True 1701.000000 1701 96.004000 3733 4780 1 chr5B.!!$R2 1047

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
462 486 0.880718 CGCCTCCTCCGCCTAAATTC 60.881 60.0 0.0 0.0 0.00 2.17 F
1872 1935 0.538746 AAAAAGGTGGCGGTGGGTAG 60.539 55.0 0.0 0.0 0.00 3.18 F
1934 1997 0.099082 GAGTCTCGTCTGCTAACCCG 59.901 60.0 0.0 0.0 0.00 5.28 F
1943 2006 0.108615 CTGCTAACCCGTGAGACCTG 60.109 60.0 0.0 0.0 0.00 4.00 F
1947 2010 0.113776 TAACCCGTGAGACCTGGTCT 59.886 55.0 28.7 28.7 46.42 3.85 F
3878 3996 0.880278 GCGTGTGTGGTGTGTGAGAT 60.880 55.0 0.0 0.0 0.00 2.75 F
5020 5156 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.0 0.0 0.0 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 1978 0.099082 CGGGTTAGCAGACGAGACTC 59.901 60.000 0.00 0.0 0.00 3.36 R
3330 3443 0.762418 TGCTTCAAAAGGACGGGAGA 59.238 50.000 0.00 0.0 0.00 3.71 R
3730 3848 1.135888 GTGGGCGTTAACATTTCCGTC 60.136 52.381 6.39 0.0 0.00 4.79 R
4696 4827 0.472925 TAAGAGGACCAGCCCACACA 60.473 55.000 0.00 0.0 37.37 3.72 R
4943 5079 9.383519 CTCCATCTAAGCTATTTGAAACAGTAA 57.616 33.333 0.00 0.0 0.00 2.24 R
5079 5215 0.032813 ACTCCCTCCGTCCCGAAATA 60.033 55.000 0.00 0.0 0.00 1.40 R
7916 8179 0.110238 CCAAATCGAGTGCGTTGTGG 60.110 55.000 0.00 0.0 38.98 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.005748 CGGACAGAGCAGTGCAGAA 60.006 57.895 19.20 0.00 0.00 3.02
24 25 1.133976 ACAGAGCAGTGCAGAAAAGGT 60.134 47.619 19.20 2.42 0.00 3.50
103 108 8.088365 ACTGATAACTAAAACCCAGAAAAATGC 58.912 33.333 0.00 0.00 0.00 3.56
180 185 1.980772 GGGTCGGAGTCGGAAGGAA 60.981 63.158 1.41 0.00 36.95 3.36
311 327 4.180946 CGGAGCAGGGACGAGACG 62.181 72.222 0.00 0.00 0.00 4.18
462 486 0.880718 CGCCTCCTCCGCCTAAATTC 60.881 60.000 0.00 0.00 0.00 2.17
531 555 2.125188 GCTCTGCTCTGTGGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
533 557 4.074526 TCTGCTCTGTGGCTCCGC 62.075 66.667 0.00 0.00 0.00 5.54
561 585 1.154225 CGCAACGGCTCATTCCAAC 60.154 57.895 0.00 0.00 38.10 3.77
562 586 1.577328 CGCAACGGCTCATTCCAACT 61.577 55.000 0.00 0.00 38.10 3.16
564 588 1.813513 CAACGGCTCATTCCAACTCT 58.186 50.000 0.00 0.00 0.00 3.24
1837 1900 2.793278 AAAAGTTCACGTTGCATCCC 57.207 45.000 0.00 0.00 0.00 3.85
1838 1901 1.981256 AAAGTTCACGTTGCATCCCT 58.019 45.000 0.00 0.00 0.00 4.20
1841 1904 1.202758 AGTTCACGTTGCATCCCTCAA 60.203 47.619 0.00 0.00 0.00 3.02
1842 1905 1.606668 GTTCACGTTGCATCCCTCAAA 59.393 47.619 0.00 0.00 0.00 2.69
1844 1907 1.879380 TCACGTTGCATCCCTCAAAAG 59.121 47.619 0.00 0.00 0.00 2.27
1846 1909 2.293122 CACGTTGCATCCCTCAAAAGAA 59.707 45.455 0.00 0.00 0.00 2.52
1849 1912 4.142049 ACGTTGCATCCCTCAAAAGAAAAA 60.142 37.500 0.00 0.00 0.00 1.94
1850 1913 4.445385 CGTTGCATCCCTCAAAAGAAAAAG 59.555 41.667 0.00 0.00 0.00 2.27
1853 1916 6.232581 TGCATCCCTCAAAAGAAAAAGAAA 57.767 33.333 0.00 0.00 0.00 2.52
1855 1918 7.108847 TGCATCCCTCAAAAGAAAAAGAAAAA 58.891 30.769 0.00 0.00 0.00 1.94
1870 1933 2.280753 AAAAAGGTGGCGGTGGGT 59.719 55.556 0.00 0.00 0.00 4.51
1871 1934 1.537669 AAAAAGGTGGCGGTGGGTA 59.462 52.632 0.00 0.00 0.00 3.69
1872 1935 0.538746 AAAAAGGTGGCGGTGGGTAG 60.539 55.000 0.00 0.00 0.00 3.18
1874 1937 1.205460 AAAGGTGGCGGTGGGTAGAT 61.205 55.000 0.00 0.00 0.00 1.98
1875 1938 1.910580 AAGGTGGCGGTGGGTAGATG 61.911 60.000 0.00 0.00 0.00 2.90
1876 1939 2.513897 GTGGCGGTGGGTAGATGC 60.514 66.667 0.00 0.00 0.00 3.91
1878 1941 2.297895 TGGCGGTGGGTAGATGCTT 61.298 57.895 0.00 0.00 0.00 3.91
1880 1943 1.376609 GGCGGTGGGTAGATGCTTTG 61.377 60.000 0.00 0.00 0.00 2.77
1881 1944 0.676782 GCGGTGGGTAGATGCTTTGT 60.677 55.000 0.00 0.00 0.00 2.83
1882 1945 1.086696 CGGTGGGTAGATGCTTTGTG 58.913 55.000 0.00 0.00 0.00 3.33
1883 1946 1.338674 CGGTGGGTAGATGCTTTGTGA 60.339 52.381 0.00 0.00 0.00 3.58
1884 1947 2.680805 CGGTGGGTAGATGCTTTGTGAT 60.681 50.000 0.00 0.00 0.00 3.06
1885 1948 3.356290 GGTGGGTAGATGCTTTGTGATT 58.644 45.455 0.00 0.00 0.00 2.57
1886 1949 3.763897 GGTGGGTAGATGCTTTGTGATTT 59.236 43.478 0.00 0.00 0.00 2.17
1887 1950 4.380867 GGTGGGTAGATGCTTTGTGATTTG 60.381 45.833 0.00 0.00 0.00 2.32
1888 1951 4.218417 GTGGGTAGATGCTTTGTGATTTGT 59.782 41.667 0.00 0.00 0.00 2.83
1889 1952 4.218200 TGGGTAGATGCTTTGTGATTTGTG 59.782 41.667 0.00 0.00 0.00 3.33
1890 1953 4.458989 GGGTAGATGCTTTGTGATTTGTGA 59.541 41.667 0.00 0.00 0.00 3.58
1891 1954 5.048083 GGGTAGATGCTTTGTGATTTGTGAA 60.048 40.000 0.00 0.00 0.00 3.18
1892 1955 6.350445 GGGTAGATGCTTTGTGATTTGTGAAT 60.350 38.462 0.00 0.00 0.00 2.57
1893 1956 6.529125 GGTAGATGCTTTGTGATTTGTGAATG 59.471 38.462 0.00 0.00 0.00 2.67
1894 1957 6.092955 AGATGCTTTGTGATTTGTGAATGT 57.907 33.333 0.00 0.00 0.00 2.71
1895 1958 6.154445 AGATGCTTTGTGATTTGTGAATGTC 58.846 36.000 0.00 0.00 0.00 3.06
1896 1959 5.259832 TGCTTTGTGATTTGTGAATGTCA 57.740 34.783 0.00 0.00 0.00 3.58
1910 1973 4.926860 GAATGTCACGTGTCATTCATCA 57.073 40.909 39.38 19.88 44.32 3.07
1911 1974 4.890378 GAATGTCACGTGTCATTCATCAG 58.110 43.478 39.38 8.78 44.32 2.90
1912 1975 2.687370 TGTCACGTGTCATTCATCAGG 58.313 47.619 16.51 0.00 0.00 3.86
1913 1976 2.298729 TGTCACGTGTCATTCATCAGGA 59.701 45.455 16.51 0.00 0.00 3.86
1914 1977 3.055891 TGTCACGTGTCATTCATCAGGAT 60.056 43.478 16.51 0.00 0.00 3.24
1915 1978 3.308053 GTCACGTGTCATTCATCAGGATG 59.692 47.826 16.51 2.84 40.09 3.51
1916 1979 9.885351 AATGTCACGTGTCATTCATCAGGATGA 62.885 40.741 27.81 7.86 45.30 2.92
1927 1990 1.098869 TCAGGATGAGTCTCGTCTGC 58.901 55.000 19.28 6.20 42.56 4.26
1928 1991 1.102154 CAGGATGAGTCTCGTCTGCT 58.898 55.000 19.28 8.19 39.69 4.24
1929 1992 2.092914 TCAGGATGAGTCTCGTCTGCTA 60.093 50.000 19.28 3.28 42.56 3.49
1930 1993 2.685388 CAGGATGAGTCTCGTCTGCTAA 59.315 50.000 19.28 0.00 39.69 3.09
1931 1994 2.685897 AGGATGAGTCTCGTCTGCTAAC 59.314 50.000 19.28 4.30 33.07 2.34
1932 1995 2.223618 GGATGAGTCTCGTCTGCTAACC 60.224 54.545 19.28 0.70 33.07 2.85
1933 1996 1.174783 TGAGTCTCGTCTGCTAACCC 58.825 55.000 0.00 0.00 0.00 4.11
1934 1997 0.099082 GAGTCTCGTCTGCTAACCCG 59.901 60.000 0.00 0.00 0.00 5.28
1935 1998 0.608582 AGTCTCGTCTGCTAACCCGT 60.609 55.000 0.00 0.00 0.00 5.28
1936 1999 0.456312 GTCTCGTCTGCTAACCCGTG 60.456 60.000 0.00 0.00 0.00 4.94
1937 2000 0.607217 TCTCGTCTGCTAACCCGTGA 60.607 55.000 0.00 0.00 0.00 4.35
1938 2001 0.179161 CTCGTCTGCTAACCCGTGAG 60.179 60.000 0.00 0.00 0.00 3.51
1939 2002 0.607217 TCGTCTGCTAACCCGTGAGA 60.607 55.000 0.00 0.00 0.00 3.27
1940 2003 0.456312 CGTCTGCTAACCCGTGAGAC 60.456 60.000 0.00 0.00 0.00 3.36
1941 2004 0.108756 GTCTGCTAACCCGTGAGACC 60.109 60.000 0.00 0.00 0.00 3.85
1942 2005 0.251653 TCTGCTAACCCGTGAGACCT 60.252 55.000 0.00 0.00 0.00 3.85
1943 2006 0.108615 CTGCTAACCCGTGAGACCTG 60.109 60.000 0.00 0.00 0.00 4.00
1944 2007 1.218316 GCTAACCCGTGAGACCTGG 59.782 63.158 0.00 0.00 0.00 4.45
1945 2008 1.542187 GCTAACCCGTGAGACCTGGT 61.542 60.000 0.00 0.00 0.00 4.00
1946 2009 0.531200 CTAACCCGTGAGACCTGGTC 59.469 60.000 19.20 19.20 0.00 4.02
1947 2010 0.113776 TAACCCGTGAGACCTGGTCT 59.886 55.000 28.70 28.70 46.42 3.85
1960 2023 6.882768 AGACCTGGTCTCATAGAATTCTTT 57.117 37.500 23.49 2.41 38.71 2.52
1961 2024 7.264294 AGACCTGGTCTCATAGAATTCTTTT 57.736 36.000 23.49 0.00 38.71 2.27
1962 2025 7.334858 AGACCTGGTCTCATAGAATTCTTTTC 58.665 38.462 23.49 0.00 38.71 2.29
1963 2026 6.418946 ACCTGGTCTCATAGAATTCTTTTCC 58.581 40.000 14.36 8.65 0.00 3.13
1964 2027 6.216456 ACCTGGTCTCATAGAATTCTTTTCCT 59.784 38.462 14.36 0.00 0.00 3.36
1965 2028 7.403231 ACCTGGTCTCATAGAATTCTTTTCCTA 59.597 37.037 14.36 0.00 0.00 2.94
1966 2029 8.435982 CCTGGTCTCATAGAATTCTTTTCCTAT 58.564 37.037 14.36 0.00 0.00 2.57
1994 2057 8.204160 CAGTACTACTCCATCAACCATGAATTA 58.796 37.037 0.00 0.00 39.49 1.40
2051 2143 7.747155 TTGGAAACATTATTTAAGACGACCA 57.253 32.000 0.00 0.00 42.32 4.02
2155 2247 3.792401 CTGATCAATGGCATGTGCAAAT 58.208 40.909 0.00 0.00 44.36 2.32
2193 2285 7.117092 GCTTTATTTCGGCTCAACCAAAAATAA 59.883 33.333 7.44 7.44 40.48 1.40
2281 2380 5.352569 GTGATCTTATTTGTGACTCTGGTGG 59.647 44.000 0.00 0.00 0.00 4.61
2297 2396 2.084546 GGTGGATAGTCGCAAAAGCTT 58.915 47.619 0.00 0.00 0.00 3.74
2317 2416 5.297776 AGCTTGACCAAAAGATCCGATAATG 59.702 40.000 0.00 0.00 0.00 1.90
2321 2420 5.163663 TGACCAAAAGATCCGATAATGTTGC 60.164 40.000 0.00 0.00 0.00 4.17
2324 2423 5.066375 CCAAAAGATCCGATAATGTTGCTCA 59.934 40.000 0.00 0.00 0.00 4.26
2362 2461 3.258372 CCTATAGCCGCTCATGACCTTTA 59.742 47.826 0.00 0.00 0.00 1.85
2383 2482 8.607459 CCTTTACAGATCTGTTTGTATGTCATC 58.393 37.037 32.14 0.00 41.83 2.92
2601 2700 3.953542 CCTGAAAAAGGGGGCTATAGT 57.046 47.619 0.84 0.00 43.15 2.12
2705 2804 6.115446 TCTGGTTTGTATCATGTGGAGATTC 58.885 40.000 0.00 0.00 0.00 2.52
2709 2808 6.259608 GGTTTGTATCATGTGGAGATTCTGAG 59.740 42.308 0.00 0.00 0.00 3.35
2719 2818 2.420642 GAGATTCTGAGTGCTGCACAA 58.579 47.619 31.90 18.82 36.74 3.33
2824 2923 2.309136 ATGGCTGGGCAGTTTAGTTT 57.691 45.000 2.90 0.00 0.00 2.66
2866 2965 9.947433 AAATTTCAATTCTTCTTAATGGCATCA 57.053 25.926 0.00 0.00 0.00 3.07
2911 3013 5.027460 TCCTGCCATACCTTCAGTTACTTA 58.973 41.667 0.00 0.00 0.00 2.24
2912 3014 5.128827 TCCTGCCATACCTTCAGTTACTTAG 59.871 44.000 0.00 0.00 0.00 2.18
2915 3017 7.011499 TGCCATACCTTCAGTTACTTAGAAA 57.989 36.000 0.00 0.00 0.00 2.52
2916 3018 6.877322 TGCCATACCTTCAGTTACTTAGAAAC 59.123 38.462 0.00 0.00 0.00 2.78
2917 3019 7.104290 GCCATACCTTCAGTTACTTAGAAACT 58.896 38.462 0.00 0.00 37.67 2.66
2918 3020 7.606839 GCCATACCTTCAGTTACTTAGAAACTT 59.393 37.037 0.00 0.00 34.99 2.66
2919 3021 9.503399 CCATACCTTCAGTTACTTAGAAACTTT 57.497 33.333 0.00 0.00 34.99 2.66
3068 3173 4.365723 AGCTGTTCTTGTTTGCAGAAATG 58.634 39.130 0.00 0.00 0.00 2.32
3088 3193 1.395608 GTGGTGCATGCATTTCATTGC 59.604 47.619 25.64 7.95 43.07 3.56
3109 3214 3.173965 CTTAACAGAGTTCCCTCCCTCA 58.826 50.000 0.00 0.00 38.58 3.86
3177 3285 7.391148 TTTTCTTTCATTATTCCTTCCTCCG 57.609 36.000 0.00 0.00 0.00 4.63
3178 3286 5.036117 TCTTTCATTATTCCTTCCTCCGG 57.964 43.478 0.00 0.00 0.00 5.14
3224 3335 8.100791 TCTACTGCAAAGTCTGTTAAATACCAT 58.899 33.333 0.00 0.00 0.00 3.55
3226 3337 8.268850 ACTGCAAAGTCTGTTAAATACCATAG 57.731 34.615 0.00 0.00 0.00 2.23
3255 3366 3.618594 TCTGCTCGCATGAACTCATTTAC 59.381 43.478 0.00 0.00 33.61 2.01
3269 3380 6.301169 ACTCATTTACTTACTCCCTGGAAG 57.699 41.667 0.00 0.00 0.00 3.46
3303 3416 7.118390 GCATGGTATTGGTATCTGTATTCTGTC 59.882 40.741 0.00 0.00 0.00 3.51
3311 3424 8.547481 TGGTATCTGTATTCTGTCCTATTTCA 57.453 34.615 0.00 0.00 0.00 2.69
3312 3425 9.159254 TGGTATCTGTATTCTGTCCTATTTCAT 57.841 33.333 0.00 0.00 0.00 2.57
3318 3431 3.845781 TCTGTCCTATTTCATGAGGCC 57.154 47.619 0.00 0.00 32.40 5.19
3321 3434 3.648067 CTGTCCTATTTCATGAGGCCCTA 59.352 47.826 0.00 0.00 32.40 3.53
3377 3490 1.198637 GCAATCACCACTGCTTCTCAC 59.801 52.381 0.00 0.00 35.62 3.51
3528 3641 2.297597 GAGGCATCGAGGTATTAGCACT 59.702 50.000 0.00 0.00 0.00 4.40
3530 3643 3.060602 GGCATCGAGGTATTAGCACTTC 58.939 50.000 0.00 0.00 0.00 3.01
3570 3685 6.092807 CCCTCCATAAAGAAATATAAGAGCGC 59.907 42.308 0.00 0.00 0.00 5.92
3647 3762 5.911752 AGTACATAAGATGGCTTGAGACAG 58.088 41.667 0.00 0.00 35.91 3.51
3714 3832 7.115805 CGCAGTAACTTCTACATGTTTGTCTTA 59.884 37.037 2.30 0.00 37.28 2.10
3716 3834 8.709646 CAGTAACTTCTACATGTTTGTCTTACC 58.290 37.037 2.30 0.00 37.28 2.85
3717 3835 8.648693 AGTAACTTCTACATGTTTGTCTTACCT 58.351 33.333 2.30 0.00 37.28 3.08
3719 3837 6.231211 ACTTCTACATGTTTGTCTTACCTGG 58.769 40.000 2.30 0.00 37.28 4.45
3720 3838 5.818678 TCTACATGTTTGTCTTACCTGGT 57.181 39.130 2.30 4.05 37.28 4.00
3721 3839 5.790593 TCTACATGTTTGTCTTACCTGGTC 58.209 41.667 2.30 0.00 37.28 4.02
3723 3841 5.048846 ACATGTTTGTCTTACCTGGTCTT 57.951 39.130 0.63 0.00 0.00 3.01
3724 3842 5.445964 ACATGTTTGTCTTACCTGGTCTTT 58.554 37.500 0.63 0.00 0.00 2.52
3725 3843 5.891551 ACATGTTTGTCTTACCTGGTCTTTT 59.108 36.000 0.63 0.00 0.00 2.27
3726 3844 6.039382 ACATGTTTGTCTTACCTGGTCTTTTC 59.961 38.462 0.63 0.00 0.00 2.29
3727 3845 5.751586 TGTTTGTCTTACCTGGTCTTTTCT 58.248 37.500 0.63 0.00 0.00 2.52
3728 3846 6.184789 TGTTTGTCTTACCTGGTCTTTTCTT 58.815 36.000 0.63 0.00 0.00 2.52
3729 3847 7.340256 TGTTTGTCTTACCTGGTCTTTTCTTA 58.660 34.615 0.63 0.00 0.00 2.10
3730 3848 7.497909 TGTTTGTCTTACCTGGTCTTTTCTTAG 59.502 37.037 0.63 0.00 0.00 2.18
3878 3996 0.880278 GCGTGTGTGGTGTGTGAGAT 60.880 55.000 0.00 0.00 0.00 2.75
4696 4827 1.774110 TGTTTTGCCCACACACAGAT 58.226 45.000 0.00 0.00 0.00 2.90
4831 4967 5.069516 TCTGTAGTATGCTCTTGATGATGCA 59.930 40.000 0.00 0.00 39.83 3.96
4943 5079 9.953565 TGTAGTCTGCAAAATAATAGGTAAACT 57.046 29.630 0.00 0.00 0.00 2.66
5001 5137 7.043565 GGTTTGTCCTTGGTCGTATCTATTTA 58.956 38.462 0.00 0.00 0.00 1.40
5002 5138 7.224167 GGTTTGTCCTTGGTCGTATCTATTTAG 59.776 40.741 0.00 0.00 0.00 1.85
5003 5139 7.414222 TTGTCCTTGGTCGTATCTATTTAGT 57.586 36.000 0.00 0.00 0.00 2.24
5004 5140 8.523915 TTGTCCTTGGTCGTATCTATTTAGTA 57.476 34.615 0.00 0.00 0.00 1.82
5005 5141 7.934457 TGTCCTTGGTCGTATCTATTTAGTAC 58.066 38.462 0.00 0.00 0.00 2.73
5006 5142 7.776969 TGTCCTTGGTCGTATCTATTTAGTACT 59.223 37.037 0.00 0.00 0.00 2.73
5007 5143 8.288913 GTCCTTGGTCGTATCTATTTAGTACTC 58.711 40.741 0.00 0.00 0.00 2.59
5008 5144 7.446625 TCCTTGGTCGTATCTATTTAGTACTCC 59.553 40.741 0.00 0.00 0.00 3.85
5009 5145 7.309073 CCTTGGTCGTATCTATTTAGTACTCCC 60.309 44.444 0.00 0.00 0.00 4.30
5010 5146 6.845908 TGGTCGTATCTATTTAGTACTCCCT 58.154 40.000 0.00 0.00 0.00 4.20
5011 5147 6.939163 TGGTCGTATCTATTTAGTACTCCCTC 59.061 42.308 0.00 0.00 0.00 4.30
5012 5148 6.374053 GGTCGTATCTATTTAGTACTCCCTCC 59.626 46.154 0.00 0.00 0.00 4.30
5013 5149 6.091986 GTCGTATCTATTTAGTACTCCCTCCG 59.908 46.154 0.00 0.00 0.00 4.63
5014 5150 5.936956 CGTATCTATTTAGTACTCCCTCCGT 59.063 44.000 0.00 0.00 0.00 4.69
5015 5151 6.091986 CGTATCTATTTAGTACTCCCTCCGTC 59.908 46.154 0.00 0.00 0.00 4.79
5016 5152 4.723309 TCTATTTAGTACTCCCTCCGTCC 58.277 47.826 0.00 0.00 0.00 4.79
5017 5153 2.149973 TTTAGTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
5018 5154 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
5019 5155 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
5020 5156 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
5021 5157 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
5022 5158 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
5023 5159 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5024 5160 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5025 5161 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5026 5162 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5027 5163 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5028 5164 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
5029 5165 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
5030 5166 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
5031 5167 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
5032 5168 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
5033 5169 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
5034 5170 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
5035 5171 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
5036 5172 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
5037 5173 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
5038 5174 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
5039 5175 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
5040 5176 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
5041 5177 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
5042 5178 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
5048 5184 7.768807 AGTGTCTCAACTTTGTACTATCTCT 57.231 36.000 0.00 0.00 0.00 3.10
5049 5185 8.865420 AGTGTCTCAACTTTGTACTATCTCTA 57.135 34.615 0.00 0.00 0.00 2.43
5050 5186 8.952278 AGTGTCTCAACTTTGTACTATCTCTAG 58.048 37.037 0.00 0.00 0.00 2.43
5051 5187 8.732531 GTGTCTCAACTTTGTACTATCTCTAGT 58.267 37.037 0.00 0.00 41.19 2.57
5052 5188 9.955102 TGTCTCAACTTTGTACTATCTCTAGTA 57.045 33.333 0.00 0.00 39.04 1.82
5078 5214 9.726438 ACAAATTTATACTAAGCTTGAGACACT 57.274 29.630 9.86 0.00 0.00 3.55
5085 5221 6.952935 ACTAAGCTTGAGACACTTATTTCG 57.047 37.500 9.86 0.00 0.00 3.46
5086 5222 5.869888 ACTAAGCTTGAGACACTTATTTCGG 59.130 40.000 9.86 0.00 0.00 4.30
5087 5223 3.600388 AGCTTGAGACACTTATTTCGGG 58.400 45.455 0.00 0.00 0.00 5.14
5088 5224 3.260884 AGCTTGAGACACTTATTTCGGGA 59.739 43.478 0.00 0.00 0.00 5.14
5089 5225 3.371285 GCTTGAGACACTTATTTCGGGAC 59.629 47.826 0.00 0.00 0.00 4.46
5209 5351 2.950781 TCCATCTGCGGAGAAGTCTAT 58.049 47.619 11.77 0.00 0.00 1.98
5337 5479 3.530265 TGGTAAACTCGTGTGTTCACT 57.470 42.857 4.59 0.00 41.89 3.41
5561 5733 1.073897 GAGCAGTCTTGGTTGGCCT 59.926 57.895 3.32 0.00 34.61 5.19
5800 5972 6.317140 CAGTATATGTTTTGCACATCTCCACT 59.683 38.462 0.00 0.00 43.17 4.00
5878 6050 1.462283 CTGAGATGCAAGTGTTCCGTG 59.538 52.381 0.00 0.00 0.00 4.94
6013 6185 2.794350 CTGCGACCAAAAACCAAATCAC 59.206 45.455 0.00 0.00 0.00 3.06
6017 6189 5.044558 GCGACCAAAAACCAAATCACTAAA 58.955 37.500 0.00 0.00 0.00 1.85
6023 6195 9.237187 ACCAAAAACCAAATCACTAAACAAAAT 57.763 25.926 0.00 0.00 0.00 1.82
6028 6200 8.896320 AACCAAATCACTAAACAAAATTACCC 57.104 30.769 0.00 0.00 0.00 3.69
6029 6201 7.446769 ACCAAATCACTAAACAAAATTACCCC 58.553 34.615 0.00 0.00 0.00 4.95
6030 6202 6.876789 CCAAATCACTAAACAAAATTACCCCC 59.123 38.462 0.00 0.00 0.00 5.40
6059 6261 5.290386 CCTTCCCATAATGTAAGACGTCTC 58.710 45.833 20.33 8.01 0.00 3.36
6425 6638 4.159244 TGAATTTGGGGGTTACTATCCG 57.841 45.455 0.00 0.00 0.00 4.18
6429 6642 2.267160 TGGGGGTTACTATCCGGAAA 57.733 50.000 9.01 0.00 0.00 3.13
6477 6690 1.210478 CCCGGAATGAAGATCAGGTGT 59.790 52.381 0.73 0.00 31.12 4.16
6860 7073 5.835819 CCTCTTCTATATCTGGTCCTGTTCA 59.164 44.000 0.00 0.00 0.00 3.18
6882 7095 7.031226 TCAGCATAAAATAGGATGAAGTTGC 57.969 36.000 0.00 0.00 31.54 4.17
7088 7301 1.461268 TTGGGCTGGACCACTCTCA 60.461 57.895 0.00 0.00 41.03 3.27
7152 7365 6.422701 CGTGTCAGGTTTTGTAATTCAGTCTA 59.577 38.462 0.00 0.00 0.00 2.59
7359 7573 5.698089 TGAGATGCAAGTTGACTCTTTACTG 59.302 40.000 7.16 0.00 0.00 2.74
7404 7666 6.863126 CAGGAACACATTAACCTTGAATTGTC 59.137 38.462 0.00 0.00 0.00 3.18
7426 7688 1.689813 TGTGGAGTCTTGCTAACCGAA 59.310 47.619 0.00 0.00 0.00 4.30
7622 7884 3.077359 CCCAGCTTTAGAAGTGGAGTTG 58.923 50.000 9.42 0.00 33.97 3.16
7733 7995 2.053116 GTGCAACTGCGACACGTG 60.053 61.111 15.48 15.48 45.83 4.49
7744 8006 0.939577 CGACACGTGTTGACTGGGAG 60.940 60.000 28.61 6.00 0.00 4.30
7802 8064 3.625764 TCTTTTGACTCCTGTTTCGGTTG 59.374 43.478 0.00 0.00 0.00 3.77
7809 8071 3.000727 CTCCTGTTTCGGTTGATGTACC 58.999 50.000 0.00 0.00 34.72 3.34
7821 8083 6.740411 GGTTGATGTACCGTACCATTTTTA 57.260 37.500 6.23 0.00 0.00 1.52
7834 8096 8.748582 CCGTACCATTTTTAGTTTTGTTCTTTC 58.251 33.333 0.00 0.00 0.00 2.62
7838 8100 9.936759 ACCATTTTTAGTTTTGTTCTTTCAGAA 57.063 25.926 0.00 0.00 0.00 3.02
7853 8115 2.020720 TCAGAAAACGCAAAAGCCTCA 58.979 42.857 0.00 0.00 0.00 3.86
7857 8119 2.103410 AACGCAAAAGCCTCACGTT 58.897 47.368 0.00 0.00 41.67 3.99
7916 8179 4.384247 GCATCGATCTGTACAAGCATAGAC 59.616 45.833 0.00 0.00 0.00 2.59
7937 8200 1.464608 CACAACGCACTCGATTTGGAT 59.535 47.619 0.00 0.00 39.41 3.41
8023 8292 2.244117 ATCACCGCGCATCTCTGGTT 62.244 55.000 8.75 0.00 30.72 3.67
8052 8321 1.741327 GCCGCCATCCTTGCATCATT 61.741 55.000 0.00 0.00 0.00 2.57
8157 8427 2.740055 CACTGTCCACTGCTCGCC 60.740 66.667 0.00 0.00 0.00 5.54
8224 8557 1.379710 TGCCCATACCGCTTGCAAT 60.380 52.632 0.00 0.00 0.00 3.56
8265 8957 0.249447 TAGCCATCATCGTCGCTTGG 60.249 55.000 0.00 0.00 32.76 3.61
8288 8980 2.635229 ATAGCAGGAGCCAGCGTTCG 62.635 60.000 0.00 0.00 43.56 3.95
8422 9129 4.323868 GGATCCCAACAGTTCTCTAAGCTT 60.324 45.833 3.48 3.48 0.00 3.74
8448 9155 3.820467 AGACCATTCAAGCAATCGAACAA 59.180 39.130 0.00 0.00 0.00 2.83
8483 9192 3.167921 ACTGGGCGGTTTTTGTAAAAC 57.832 42.857 6.50 6.50 0.00 2.43
8536 9246 1.216678 TGTTTTTGGAGAAGCCCCTCA 59.783 47.619 5.47 0.00 34.94 3.86
8551 9261 2.092968 CCCCTCAATCCACTCGATTTCA 60.093 50.000 0.00 0.00 39.28 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.463553 TTCTGCACTGCTCTGTCCGA 61.464 55.000 1.98 0.00 0.00 4.55
1 2 0.601046 TTTCTGCACTGCTCTGTCCG 60.601 55.000 1.98 0.00 0.00 4.79
2 3 1.534595 CTTTTCTGCACTGCTCTGTCC 59.465 52.381 1.98 0.00 0.00 4.02
3 4 1.534595 CCTTTTCTGCACTGCTCTGTC 59.465 52.381 1.98 0.00 0.00 3.51
4 5 1.133976 ACCTTTTCTGCACTGCTCTGT 60.134 47.619 1.98 0.00 0.00 3.41
19 20 0.321653 CCCAACTGCGAGCTACCTTT 60.322 55.000 0.00 0.00 0.00 3.11
24 25 0.898326 TGTCTCCCAACTGCGAGCTA 60.898 55.000 0.00 0.00 0.00 3.32
85 86 3.326297 TGGGGCATTTTTCTGGGTTTTAG 59.674 43.478 0.00 0.00 0.00 1.85
135 140 1.010793 TCCTCTCCTCTCCTCTCCTCT 59.989 57.143 0.00 0.00 0.00 3.69
462 486 3.091545 AGAGAGAGAGAGTTTGCTCCTG 58.908 50.000 0.00 0.00 42.59 3.86
966 990 2.189499 GGCAGGCTAAGAATGGGCG 61.189 63.158 0.00 0.00 37.69 6.13
1329 1392 3.311110 GTGGTCGTGGAGGAGGCA 61.311 66.667 0.00 0.00 0.00 4.75
1530 1593 2.944954 TCCAGGTCCTCCTCCGGA 60.945 66.667 2.93 2.93 43.07 5.14
1630 1693 2.487934 CCGAGTGCCCTTGATATGAAG 58.512 52.381 0.00 0.00 0.00 3.02
1853 1916 0.538746 CTACCCACCGCCACCTTTTT 60.539 55.000 0.00 0.00 0.00 1.94
1855 1918 1.205460 ATCTACCCACCGCCACCTTT 61.205 55.000 0.00 0.00 0.00 3.11
1857 1920 2.040606 ATCTACCCACCGCCACCT 59.959 61.111 0.00 0.00 0.00 4.00
1858 1921 2.189521 CATCTACCCACCGCCACC 59.810 66.667 0.00 0.00 0.00 4.61
1859 1922 2.513897 GCATCTACCCACCGCCAC 60.514 66.667 0.00 0.00 0.00 5.01
1860 1923 1.847798 AAAGCATCTACCCACCGCCA 61.848 55.000 0.00 0.00 0.00 5.69
1861 1924 1.077716 AAAGCATCTACCCACCGCC 60.078 57.895 0.00 0.00 0.00 6.13
1862 1925 0.676782 ACAAAGCATCTACCCACCGC 60.677 55.000 0.00 0.00 0.00 5.68
1863 1926 1.086696 CACAAAGCATCTACCCACCG 58.913 55.000 0.00 0.00 0.00 4.94
1864 1927 2.489938 TCACAAAGCATCTACCCACC 57.510 50.000 0.00 0.00 0.00 4.61
1865 1928 4.218417 ACAAATCACAAAGCATCTACCCAC 59.782 41.667 0.00 0.00 0.00 4.61
1866 1929 4.218200 CACAAATCACAAAGCATCTACCCA 59.782 41.667 0.00 0.00 0.00 4.51
1867 1930 4.458989 TCACAAATCACAAAGCATCTACCC 59.541 41.667 0.00 0.00 0.00 3.69
1869 1932 7.086376 ACATTCACAAATCACAAAGCATCTAC 58.914 34.615 0.00 0.00 0.00 2.59
1870 1933 7.040548 TGACATTCACAAATCACAAAGCATCTA 60.041 33.333 0.00 0.00 0.00 1.98
1871 1934 6.092955 ACATTCACAAATCACAAAGCATCT 57.907 33.333 0.00 0.00 0.00 2.90
1872 1935 5.921976 TGACATTCACAAATCACAAAGCATC 59.078 36.000 0.00 0.00 0.00 3.91
1874 1937 5.042593 GTGACATTCACAAATCACAAAGCA 58.957 37.500 1.34 0.00 46.22 3.91
1875 1938 5.565723 GTGACATTCACAAATCACAAAGC 57.434 39.130 1.34 0.00 46.22 3.51
1890 1953 3.686241 CCTGATGAATGACACGTGACATT 59.314 43.478 35.00 35.00 41.60 2.71
1891 1954 3.055891 TCCTGATGAATGACACGTGACAT 60.056 43.478 24.49 24.49 32.16 3.06
1892 1955 2.298729 TCCTGATGAATGACACGTGACA 59.701 45.455 25.01 23.44 0.00 3.58
1893 1956 2.959516 TCCTGATGAATGACACGTGAC 58.040 47.619 25.01 17.68 0.00 3.67
1894 1957 3.195396 TCATCCTGATGAATGACACGTGA 59.805 43.478 25.01 0.00 44.14 4.35
1895 1958 3.524541 TCATCCTGATGAATGACACGTG 58.475 45.455 15.48 15.48 44.14 4.49
1896 1959 3.196469 ACTCATCCTGATGAATGACACGT 59.804 43.478 10.78 1.62 46.10 4.49
1897 1960 3.790091 ACTCATCCTGATGAATGACACG 58.210 45.455 10.78 1.06 46.10 4.49
1898 1961 5.021033 AGACTCATCCTGATGAATGACAC 57.979 43.478 10.78 0.92 46.10 3.67
1899 1962 4.202090 CGAGACTCATCCTGATGAATGACA 60.202 45.833 10.78 0.00 46.10 3.58
1900 1963 4.202101 ACGAGACTCATCCTGATGAATGAC 60.202 45.833 10.78 2.08 46.10 3.06
1901 1964 3.956848 ACGAGACTCATCCTGATGAATGA 59.043 43.478 10.78 0.00 46.10 2.57
1902 1965 4.037803 AGACGAGACTCATCCTGATGAATG 59.962 45.833 10.78 3.60 46.10 2.67
1903 1966 4.037803 CAGACGAGACTCATCCTGATGAAT 59.962 45.833 10.78 0.99 46.10 2.57
1904 1967 3.379688 CAGACGAGACTCATCCTGATGAA 59.620 47.826 10.78 0.00 46.10 2.57
1905 1968 2.948315 CAGACGAGACTCATCCTGATGA 59.052 50.000 9.35 9.35 44.83 2.92
1906 1969 2.543445 GCAGACGAGACTCATCCTGATG 60.543 54.545 15.71 0.55 40.09 3.07
1907 1970 1.680735 GCAGACGAGACTCATCCTGAT 59.319 52.381 15.71 0.00 0.00 2.90
1908 1971 1.098869 GCAGACGAGACTCATCCTGA 58.901 55.000 15.71 0.00 0.00 3.86
1909 1972 1.102154 AGCAGACGAGACTCATCCTG 58.898 55.000 2.82 7.23 0.00 3.86
1910 1973 2.685897 GTTAGCAGACGAGACTCATCCT 59.314 50.000 2.82 0.00 0.00 3.24
1911 1974 2.223618 GGTTAGCAGACGAGACTCATCC 60.224 54.545 2.82 0.00 0.00 3.51
1912 1975 2.223618 GGGTTAGCAGACGAGACTCATC 60.224 54.545 2.82 0.00 0.00 2.92
1913 1976 1.751924 GGGTTAGCAGACGAGACTCAT 59.248 52.381 2.82 0.00 0.00 2.90
1914 1977 1.174783 GGGTTAGCAGACGAGACTCA 58.825 55.000 2.82 0.00 0.00 3.41
1915 1978 0.099082 CGGGTTAGCAGACGAGACTC 59.901 60.000 0.00 0.00 0.00 3.36
1916 1979 0.608582 ACGGGTTAGCAGACGAGACT 60.609 55.000 0.00 0.00 0.00 3.24
1917 1980 0.456312 CACGGGTTAGCAGACGAGAC 60.456 60.000 0.00 0.00 0.00 3.36
1918 1981 0.607217 TCACGGGTTAGCAGACGAGA 60.607 55.000 0.00 0.00 0.00 4.04
1919 1982 0.179161 CTCACGGGTTAGCAGACGAG 60.179 60.000 0.00 0.00 0.00 4.18
1920 1983 0.607217 TCTCACGGGTTAGCAGACGA 60.607 55.000 0.00 0.00 0.00 4.20
1921 1984 0.456312 GTCTCACGGGTTAGCAGACG 60.456 60.000 0.00 0.00 0.00 4.18
1922 1985 0.108756 GGTCTCACGGGTTAGCAGAC 60.109 60.000 0.00 0.00 33.98 3.51
1923 1986 0.251653 AGGTCTCACGGGTTAGCAGA 60.252 55.000 0.00 0.00 0.00 4.26
1924 1987 0.108615 CAGGTCTCACGGGTTAGCAG 60.109 60.000 0.00 0.00 0.00 4.24
1925 1988 1.541310 CCAGGTCTCACGGGTTAGCA 61.541 60.000 0.00 0.00 0.00 3.49
1926 1989 1.218316 CCAGGTCTCACGGGTTAGC 59.782 63.158 0.00 0.00 0.00 3.09
1927 1990 0.531200 GACCAGGTCTCACGGGTTAG 59.469 60.000 12.94 0.00 32.77 2.34
1928 1991 0.113776 AGACCAGGTCTCACGGGTTA 59.886 55.000 17.31 0.00 38.71 2.85
1929 1992 1.152312 AGACCAGGTCTCACGGGTT 60.152 57.895 17.31 0.00 38.71 4.11
1930 1993 2.526628 AGACCAGGTCTCACGGGT 59.473 61.111 17.31 0.00 38.71 5.28
1937 2000 6.882768 AAAGAATTCTATGAGACCAGGTCT 57.117 37.500 23.18 23.18 46.42 3.85
1938 2001 6.540551 GGAAAAGAATTCTATGAGACCAGGTC 59.459 42.308 12.25 12.25 0.00 3.85
1939 2002 6.216456 AGGAAAAGAATTCTATGAGACCAGGT 59.784 38.462 8.75 0.00 0.00 4.00
1940 2003 6.657875 AGGAAAAGAATTCTATGAGACCAGG 58.342 40.000 8.75 0.00 0.00 4.45
1954 2017 9.710818 TGGAGTAGTACTGTATAGGAAAAGAAT 57.289 33.333 7.76 0.00 0.00 2.40
1955 2018 9.710818 ATGGAGTAGTACTGTATAGGAAAAGAA 57.289 33.333 7.76 0.00 0.00 2.52
1956 2019 9.352191 GATGGAGTAGTACTGTATAGGAAAAGA 57.648 37.037 7.76 0.00 0.00 2.52
1957 2020 9.132923 TGATGGAGTAGTACTGTATAGGAAAAG 57.867 37.037 7.76 0.00 0.00 2.27
1958 2021 9.483489 TTGATGGAGTAGTACTGTATAGGAAAA 57.517 33.333 7.76 0.00 0.00 2.29
1959 2022 8.910944 GTTGATGGAGTAGTACTGTATAGGAAA 58.089 37.037 7.76 0.00 0.00 3.13
1960 2023 7.504911 GGTTGATGGAGTAGTACTGTATAGGAA 59.495 40.741 7.76 0.00 0.00 3.36
1961 2024 7.002879 GGTTGATGGAGTAGTACTGTATAGGA 58.997 42.308 7.76 0.00 0.00 2.94
1962 2025 6.776116 TGGTTGATGGAGTAGTACTGTATAGG 59.224 42.308 7.76 0.00 0.00 2.57
1963 2026 7.818997 TGGTTGATGGAGTAGTACTGTATAG 57.181 40.000 7.76 0.00 0.00 1.31
1964 2027 8.002459 TCATGGTTGATGGAGTAGTACTGTATA 58.998 37.037 7.76 0.00 32.26 1.47
1965 2028 6.839134 TCATGGTTGATGGAGTAGTACTGTAT 59.161 38.462 7.76 1.53 32.26 2.29
1966 2029 6.192044 TCATGGTTGATGGAGTAGTACTGTA 58.808 40.000 7.76 0.00 32.26 2.74
1967 2030 5.023452 TCATGGTTGATGGAGTAGTACTGT 58.977 41.667 7.76 0.00 32.26 3.55
1968 2031 5.598416 TCATGGTTGATGGAGTAGTACTG 57.402 43.478 7.76 0.00 32.26 2.74
1969 2032 6.814954 ATTCATGGTTGATGGAGTAGTACT 57.185 37.500 1.37 1.37 32.26 2.73
1970 2033 8.958119 TTAATTCATGGTTGATGGAGTAGTAC 57.042 34.615 0.00 0.00 32.26 2.73
1971 2034 9.559732 CATTAATTCATGGTTGATGGAGTAGTA 57.440 33.333 0.00 0.00 32.26 1.82
1972 2035 8.274322 TCATTAATTCATGGTTGATGGAGTAGT 58.726 33.333 12.89 0.00 32.26 2.73
1973 2036 8.681486 TCATTAATTCATGGTTGATGGAGTAG 57.319 34.615 12.89 0.00 32.26 2.57
1974 2037 9.288576 GATCATTAATTCATGGTTGATGGAGTA 57.711 33.333 12.89 0.00 32.26 2.59
1975 2038 7.781219 TGATCATTAATTCATGGTTGATGGAGT 59.219 33.333 12.89 0.00 32.26 3.85
2051 2143 5.722021 AAACCAACAACTCACACTTCTTT 57.278 34.783 0.00 0.00 0.00 2.52
2155 2247 6.265196 AGCCGAAATAAAGCATGATTATGGAA 59.735 34.615 0.00 0.00 34.79 3.53
2193 2285 5.009310 GTCAAGTTTTTAGACCATTCCCGTT 59.991 40.000 0.00 0.00 0.00 4.44
2297 2396 5.163663 GCAACATTATCGGATCTTTTGGTCA 60.164 40.000 0.00 0.00 0.00 4.02
2317 2416 4.870991 GGTACTAGAGTTTCCATGAGCAAC 59.129 45.833 0.00 0.00 0.00 4.17
2321 2420 7.094118 GCTATAGGGTACTAGAGTTTCCATGAG 60.094 44.444 1.04 0.00 39.99 2.90
2324 2423 6.017830 GGCTATAGGGTACTAGAGTTTCCAT 58.982 44.000 1.04 0.00 39.99 3.41
2362 2461 7.333323 TCATGATGACATACAAACAGATCTGT 58.667 34.615 22.89 22.89 39.21 3.41
2383 2482 7.974675 ACGTATGTTAACCTTTCTCATTCATG 58.025 34.615 2.48 0.00 0.00 3.07
2457 2556 1.060713 CTGTACTGAACGTTGCTCCG 58.939 55.000 5.00 0.00 0.00 4.63
2601 2700 4.223923 TCTTTTTCTTTTGAGGGGTGCAAA 59.776 37.500 0.00 0.00 33.76 3.68
2705 2804 1.335597 CCACAATTGTGCAGCACTCAG 60.336 52.381 29.42 15.00 44.34 3.35
2709 2808 1.665599 GGCCACAATTGTGCAGCAC 60.666 57.895 29.42 19.37 44.34 4.40
2824 2923 4.864806 TGAAATTTGCGTTGTACTTTGCAA 59.135 33.333 12.88 12.88 44.81 4.08
2889 2991 3.914426 AGTAACTGAAGGTATGGCAGG 57.086 47.619 0.00 0.00 34.05 4.85
3068 3173 1.395608 GCAATGAAATGCATGCACCAC 59.604 47.619 25.37 16.75 45.70 4.16
3109 3214 5.203528 AGTTGCTAATGCCAGGAATATGTT 58.796 37.500 0.00 0.00 38.71 2.71
3178 3286 5.638530 AGAGGGAAGAATAATCTTGTCCC 57.361 43.478 8.94 8.94 46.77 4.46
3224 3335 2.752903 TCATGCGAGCAGACAAGTACTA 59.247 45.455 3.58 0.00 0.00 1.82
3226 3337 1.996292 TCATGCGAGCAGACAAGTAC 58.004 50.000 3.58 0.00 0.00 2.73
3255 3366 5.066593 GCCAATAATCTTCCAGGGAGTAAG 58.933 45.833 0.00 0.00 0.00 2.34
3269 3380 7.394359 ACAGATACCAATACCATGCCAATAATC 59.606 37.037 0.00 0.00 0.00 1.75
3303 3416 4.713792 AAGTAGGGCCTCATGAAATAGG 57.286 45.455 10.74 0.00 35.86 2.57
3329 3442 1.142060 TGCTTCAAAAGGACGGGAGAA 59.858 47.619 0.00 0.00 0.00 2.87
3330 3443 0.762418 TGCTTCAAAAGGACGGGAGA 59.238 50.000 0.00 0.00 0.00 3.71
3331 3444 1.470098 CATGCTTCAAAAGGACGGGAG 59.530 52.381 0.00 0.00 0.00 4.30
3377 3490 7.121168 TGCAGGATATCAAAGAACAGTTTAAGG 59.879 37.037 4.83 0.00 0.00 2.69
3647 3762 8.147704 TCAGAAATCCTTTTTATCCACCAAAAC 58.852 33.333 0.00 0.00 0.00 2.43
3680 3795 6.774354 TGTAGAAGTTACTGCGGTTAAAAG 57.226 37.500 1.99 0.00 0.00 2.27
3688 3803 5.405571 AGACAAACATGTAGAAGTTACTGCG 59.594 40.000 0.00 0.00 0.00 5.18
3714 3832 3.236896 TCCGTCTAAGAAAAGACCAGGT 58.763 45.455 0.00 0.00 42.46 4.00
3716 3834 5.701290 ACATTTCCGTCTAAGAAAAGACCAG 59.299 40.000 0.00 0.00 42.46 4.00
3717 3835 5.617252 ACATTTCCGTCTAAGAAAAGACCA 58.383 37.500 0.00 0.00 42.46 4.02
3719 3837 7.739043 CGTTAACATTTCCGTCTAAGAAAAGAC 59.261 37.037 6.39 0.00 42.09 3.01
3720 3838 7.569957 GCGTTAACATTTCCGTCTAAGAAAAGA 60.570 37.037 6.39 0.00 36.83 2.52
3721 3839 6.518736 GCGTTAACATTTCCGTCTAAGAAAAG 59.481 38.462 6.39 0.00 36.83 2.27
3723 3841 5.106987 GGCGTTAACATTTCCGTCTAAGAAA 60.107 40.000 6.39 0.00 37.61 2.52
3724 3842 4.389687 GGCGTTAACATTTCCGTCTAAGAA 59.610 41.667 6.39 0.00 0.00 2.52
3725 3843 3.928375 GGCGTTAACATTTCCGTCTAAGA 59.072 43.478 6.39 0.00 0.00 2.10
3726 3844 3.063045 GGGCGTTAACATTTCCGTCTAAG 59.937 47.826 6.39 0.00 0.00 2.18
3727 3845 3.002102 GGGCGTTAACATTTCCGTCTAA 58.998 45.455 6.39 0.00 0.00 2.10
3728 3846 2.028294 TGGGCGTTAACATTTCCGTCTA 60.028 45.455 6.39 0.00 0.00 2.59
3729 3847 1.270947 TGGGCGTTAACATTTCCGTCT 60.271 47.619 6.39 0.00 0.00 4.18
3730 3848 1.135888 GTGGGCGTTAACATTTCCGTC 60.136 52.381 6.39 0.00 0.00 4.79
4696 4827 0.472925 TAAGAGGACCAGCCCACACA 60.473 55.000 0.00 0.00 37.37 3.72
4943 5079 9.383519 CTCCATCTAAGCTATTTGAAACAGTAA 57.616 33.333 0.00 0.00 0.00 2.24
5001 5137 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
5002 5138 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
5003 5139 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5004 5140 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
5005 5141 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5006 5142 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
5007 5143 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
5008 5144 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5009 5145 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
5010 5146 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
5011 5147 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
5012 5148 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
5013 5149 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
5014 5150 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
5015 5151 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
5016 5152 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
5022 5158 9.298250 AGAGATAGTACAAAGTTGAGACACTTA 57.702 33.333 0.00 0.00 35.87 2.24
5023 5159 8.184304 AGAGATAGTACAAAGTTGAGACACTT 57.816 34.615 0.00 0.00 38.74 3.16
5024 5160 7.768807 AGAGATAGTACAAAGTTGAGACACT 57.231 36.000 0.00 0.00 0.00 3.55
5025 5161 8.732531 ACTAGAGATAGTACAAAGTTGAGACAC 58.267 37.037 0.00 0.00 0.00 3.67
5026 5162 8.865420 ACTAGAGATAGTACAAAGTTGAGACA 57.135 34.615 0.00 0.00 0.00 3.41
5052 5188 9.726438 AGTGTCTCAAGCTTAGTATAAATTTGT 57.274 29.630 0.00 0.00 0.00 2.83
5059 5195 9.731819 CGAAATAAGTGTCTCAAGCTTAGTATA 57.268 33.333 0.00 0.00 0.00 1.47
5060 5196 7.707035 CCGAAATAAGTGTCTCAAGCTTAGTAT 59.293 37.037 0.00 0.00 0.00 2.12
5061 5197 7.033791 CCGAAATAAGTGTCTCAAGCTTAGTA 58.966 38.462 0.00 0.00 0.00 1.82
5062 5198 5.869888 CCGAAATAAGTGTCTCAAGCTTAGT 59.130 40.000 0.00 0.00 0.00 2.24
5063 5199 5.292101 CCCGAAATAAGTGTCTCAAGCTTAG 59.708 44.000 0.00 0.00 0.00 2.18
5064 5200 5.046878 TCCCGAAATAAGTGTCTCAAGCTTA 60.047 40.000 0.00 0.00 0.00 3.09
5065 5201 4.003648 CCCGAAATAAGTGTCTCAAGCTT 58.996 43.478 0.00 0.00 0.00 3.74
5066 5202 3.260884 TCCCGAAATAAGTGTCTCAAGCT 59.739 43.478 0.00 0.00 0.00 3.74
5067 5203 3.371285 GTCCCGAAATAAGTGTCTCAAGC 59.629 47.826 0.00 0.00 0.00 4.01
5068 5204 3.612860 CGTCCCGAAATAAGTGTCTCAAG 59.387 47.826 0.00 0.00 0.00 3.02
5069 5205 3.581755 CGTCCCGAAATAAGTGTCTCAA 58.418 45.455 0.00 0.00 0.00 3.02
5070 5206 2.094390 CCGTCCCGAAATAAGTGTCTCA 60.094 50.000 0.00 0.00 0.00 3.27
5071 5207 2.165030 TCCGTCCCGAAATAAGTGTCTC 59.835 50.000 0.00 0.00 0.00 3.36
5072 5208 2.165845 CTCCGTCCCGAAATAAGTGTCT 59.834 50.000 0.00 0.00 0.00 3.41
5073 5209 2.537401 CTCCGTCCCGAAATAAGTGTC 58.463 52.381 0.00 0.00 0.00 3.67
5074 5210 1.206371 CCTCCGTCCCGAAATAAGTGT 59.794 52.381 0.00 0.00 0.00 3.55
5075 5211 1.472728 CCCTCCGTCCCGAAATAAGTG 60.473 57.143 0.00 0.00 0.00 3.16
5076 5212 0.828677 CCCTCCGTCCCGAAATAAGT 59.171 55.000 0.00 0.00 0.00 2.24
5077 5213 1.068741 CTCCCTCCGTCCCGAAATAAG 59.931 57.143 0.00 0.00 0.00 1.73
5078 5214 1.117150 CTCCCTCCGTCCCGAAATAA 58.883 55.000 0.00 0.00 0.00 1.40
5079 5215 0.032813 ACTCCCTCCGTCCCGAAATA 60.033 55.000 0.00 0.00 0.00 1.40
5080 5216 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.000 0.00 0.00 0.00 2.17
5081 5217 0.251742 TTACTCCCTCCGTCCCGAAA 60.252 55.000 0.00 0.00 0.00 3.46
5082 5218 0.032813 ATTACTCCCTCCGTCCCGAA 60.033 55.000 0.00 0.00 0.00 4.30
5083 5219 0.032813 AATTACTCCCTCCGTCCCGA 60.033 55.000 0.00 0.00 0.00 5.14
5084 5220 0.104304 CAATTACTCCCTCCGTCCCG 59.896 60.000 0.00 0.00 0.00 5.14
5085 5221 0.179054 GCAATTACTCCCTCCGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
5086 5222 0.831307 AGCAATTACTCCCTCCGTCC 59.169 55.000 0.00 0.00 0.00 4.79
5087 5223 2.693267 AAGCAATTACTCCCTCCGTC 57.307 50.000 0.00 0.00 0.00 4.79
5088 5224 2.355818 GGAAAGCAATTACTCCCTCCGT 60.356 50.000 0.00 0.00 0.00 4.69
5089 5225 2.289565 GGAAAGCAATTACTCCCTCCG 58.710 52.381 0.00 0.00 0.00 4.63
5090 5226 2.289565 CGGAAAGCAATTACTCCCTCC 58.710 52.381 0.00 0.00 0.00 4.30
5209 5351 1.755179 GCTCTCAATTGCTAGCCCAA 58.245 50.000 13.29 0.28 0.00 4.12
5362 5504 3.937814 TGATCATCGTACCTTGCAAAGT 58.062 40.909 5.90 5.90 44.25 2.66
5561 5733 2.840038 ACTCATGGAATCTACTGGTGCA 59.160 45.455 0.00 0.00 0.00 4.57
5878 6050 2.781681 TGGTAGGCTAGCCAAGTTTC 57.218 50.000 34.70 17.35 38.92 2.78
6038 6210 5.186215 TGTGAGACGTCTTACATTATGGGAA 59.814 40.000 32.21 12.08 37.52 3.97
6059 6261 1.070758 CTCCCTCCGTCCCATAATGTG 59.929 57.143 0.00 0.00 0.00 3.21
6209 6422 2.203337 GCAAGGGGGCATATGCGA 60.203 61.111 21.04 0.00 43.26 5.10
6240 6453 1.202533 AGGGGACGCTCATTATTGACG 60.203 52.381 7.55 7.55 34.61 4.35
6286 6499 3.815856 TGCTGCATGGAAGAAACAAAA 57.184 38.095 0.00 0.00 0.00 2.44
6425 6638 6.569179 TTCTGTTGCCAGTATAAGTTTTCC 57.431 37.500 0.00 0.00 39.82 3.13
6429 6642 7.112122 TCATCATTCTGTTGCCAGTATAAGTT 58.888 34.615 0.00 0.00 39.82 2.66
6477 6690 2.183478 AATGAACACGGTGCAGATGA 57.817 45.000 8.30 0.00 0.00 2.92
6585 6798 1.942657 GAACAGCAGCTGACTCACAAA 59.057 47.619 29.70 0.00 35.18 2.83
6793 7006 1.312815 GTTGCAACTCACCAGCTTCT 58.687 50.000 22.36 0.00 0.00 2.85
6825 7038 7.362834 CCAGATATAGAAGAGGCACAGACATAG 60.363 44.444 0.00 0.00 0.00 2.23
6860 7073 6.604795 ACTGCAACTTCATCCTATTTTATGCT 59.395 34.615 0.00 0.00 0.00 3.79
7088 7301 5.518847 GCGTCACACGTATATATAATGCCAT 59.481 40.000 0.00 0.00 44.73 4.40
7152 7365 5.762179 TCCAAGTTCAGATGGTACTCAAT 57.238 39.130 0.00 0.00 37.94 2.57
7359 7573 7.801716 TCCTGCAAATCATTATTACCTGTAC 57.198 36.000 0.00 0.00 0.00 2.90
7404 7666 1.429463 GGTTAGCAAGACTCCACACG 58.571 55.000 0.00 0.00 0.00 4.49
7426 7688 3.194116 GCCACACCTGAATGAACATCAAT 59.806 43.478 0.00 0.00 0.00 2.57
7589 7851 1.609501 AGCTGGGAGTGTCGGCTTA 60.610 57.895 0.00 0.00 43.62 3.09
7622 7884 0.961753 CTCAAAACCAGGGCTTCACC 59.038 55.000 0.00 0.00 37.93 4.02
7662 7924 7.069702 ACCTAGCTCCTATAGTTTTTAGTGGTC 59.930 40.741 0.00 0.00 0.00 4.02
7733 7995 1.620822 ATGTTTGCCTCCCAGTCAAC 58.379 50.000 0.00 0.00 0.00 3.18
7744 8006 8.139989 AGCATTTTGATTAGATCTATGTTTGCC 58.860 33.333 2.58 0.00 0.00 4.52
7802 8064 8.291740 ACAAAACTAAAAATGGTACGGTACATC 58.708 33.333 19.14 4.35 0.00 3.06
7809 8071 9.291664 TGAAAGAACAAAACTAAAAATGGTACG 57.708 29.630 0.00 0.00 0.00 3.67
7853 8115 6.159988 CCTCTTCTTCTACAGATCAAAACGT 58.840 40.000 0.00 0.00 0.00 3.99
7857 8119 5.481824 TGAGCCTCTTCTTCTACAGATCAAA 59.518 40.000 0.00 0.00 0.00 2.69
7916 8179 0.110238 CCAAATCGAGTGCGTTGTGG 60.110 55.000 0.00 0.00 38.98 4.17
7937 8200 4.657814 AAGGATGAAGAAGTTGGGCTTA 57.342 40.909 0.00 0.00 37.59 3.09
8091 8361 1.369625 GCCACACACTACTACATGGC 58.630 55.000 0.00 0.00 45.26 4.40
8157 8427 1.145598 ATCAGCCTCCAGTGATGCG 59.854 57.895 0.00 0.00 37.23 4.73
8224 8557 3.425577 CGCAAACGGATACACTAGGTA 57.574 47.619 0.00 0.00 33.94 3.08
8265 8957 1.597578 GCTGGCTCCTGCTATGCTC 60.598 63.158 10.08 0.00 39.59 4.26
8288 8980 2.613691 TGCTACTGCGCTACTAAAACC 58.386 47.619 9.73 0.00 43.34 3.27
8390 9082 1.077716 GTTGGGATCCCTGGTTCCG 60.078 63.158 31.05 0.00 35.43 4.30
8422 9129 2.938451 CGATTGCTTGAATGGTCTGCTA 59.062 45.455 0.00 0.00 0.00 3.49
8456 9163 2.612095 AAAACCGCCCAGTTCGTCCA 62.612 55.000 0.00 0.00 0.00 4.02
8457 9164 1.449726 AAAAACCGCCCAGTTCGTCC 61.450 55.000 0.00 0.00 0.00 4.79
8459 9166 1.033202 ACAAAAACCGCCCAGTTCGT 61.033 50.000 0.00 0.00 0.00 3.85
8465 9172 1.138464 GGGTTTTACAAAAACCGCCCA 59.862 47.619 21.77 0.00 44.98 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.