Multiple sequence alignment - TraesCS2B01G250900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G250900 chr2B 100.000 4760 0 0 1 4760 260769248 260764489 0.000000e+00 8791.0
1 TraesCS2B01G250900 chr2B 87.080 774 91 2 178 950 675205680 675206445 0.000000e+00 867.0
2 TraesCS2B01G250900 chr2B 100.000 58 0 0 4327 4384 260764867 260764810 1.810000e-19 108.0
3 TraesCS2B01G250900 chr2B 100.000 58 0 0 4382 4439 260764922 260764865 1.810000e-19 108.0
4 TraesCS2B01G250900 chr2B 76.608 171 38 2 564 733 748067684 748067853 5.070000e-15 93.5
5 TraesCS2B01G250900 chr2A 94.074 1772 54 19 2432 4178 276277692 276275947 0.000000e+00 2643.0
6 TraesCS2B01G250900 chr2A 91.888 1467 40 28 977 2388 276279211 276277769 0.000000e+00 1977.0
7 TraesCS2B01G250900 chr2A 90.617 373 33 2 4383 4755 276257266 276256896 1.190000e-135 494.0
8 TraesCS2B01G250900 chr2A 92.903 155 11 0 4230 4384 276257364 276257210 4.790000e-55 226.0
9 TraesCS2B01G250900 chr2D 95.492 1442 21 17 971 2388 206632016 206633437 0.000000e+00 2263.0
10 TraesCS2B01G250900 chr2D 95.658 1405 38 9 2787 4178 206635116 206636510 0.000000e+00 2235.0
11 TraesCS2B01G250900 chr2D 97.567 411 8 1 2386 2796 206633476 206633884 0.000000e+00 702.0
12 TraesCS2B01G250900 chr2D 93.834 373 21 2 4383 4755 206636789 206637159 1.160000e-155 560.0
13 TraesCS2B01G250900 chr2D 97.175 177 5 0 1 177 176090980 176090804 2.780000e-77 300.0
14 TraesCS2B01G250900 chr2D 94.194 155 9 0 4230 4384 206636691 206636845 2.210000e-58 237.0
15 TraesCS2B01G250900 chr2D 83.036 112 11 7 1517 1624 525513032 525513139 1.410000e-15 95.3
16 TraesCS2B01G250900 chr6B 95.731 773 23 2 177 949 624132367 624133129 0.000000e+00 1236.0
17 TraesCS2B01G250900 chr6B 95.731 773 23 2 177 949 624165138 624165900 0.000000e+00 1236.0
18 TraesCS2B01G250900 chr5A 89.433 776 67 4 177 951 658899956 658899195 0.000000e+00 965.0
19 TraesCS2B01G250900 chr5A 81.600 125 19 4 1503 1625 494570517 494570639 3.030000e-17 100.0
20 TraesCS2B01G250900 chr7A 88.645 775 72 5 177 950 731231164 731231923 0.000000e+00 929.0
21 TraesCS2B01G250900 chr7A 79.699 133 23 4 1495 1625 252715973 252716103 5.070000e-15 93.5
22 TraesCS2B01G250900 chr7D 83.290 778 114 8 177 949 56980184 56979418 0.000000e+00 702.0
23 TraesCS2B01G250900 chr7D 97.175 177 5 0 1 177 246282614 246282790 2.780000e-77 300.0
24 TraesCS2B01G250900 chr7D 79.200 125 22 4 1503 1625 237411045 237411167 3.050000e-12 84.2
25 TraesCS2B01G250900 chr6D 79.365 756 146 4 178 933 411017768 411017023 1.520000e-144 523.0
26 TraesCS2B01G250900 chr6D 96.610 177 6 0 1 177 165008326 165008150 1.300000e-75 294.0
27 TraesCS2B01G250900 chr3A 97.740 177 4 0 1 177 422572182 422572006 5.980000e-79 305.0
28 TraesCS2B01G250900 chr1D 97.740 177 4 0 1 177 199133228 199133404 5.980000e-79 305.0
29 TraesCS2B01G250900 chr4B 97.175 177 5 0 1 177 123841610 123841786 2.780000e-77 300.0
30 TraesCS2B01G250900 chr4B 97.175 177 5 0 1 177 611864105 611864281 2.780000e-77 300.0
31 TraesCS2B01G250900 chr4D 97.175 177 4 1 1 177 86099064 86099239 1.000000e-76 298.0
32 TraesCS2B01G250900 chr4D 96.610 177 6 0 1 177 307488424 307488600 1.300000e-75 294.0
33 TraesCS2B01G250900 chr5D 78.022 273 39 16 684 950 16121524 16121267 8.250000e-33 152.0
34 TraesCS2B01G250900 chr5D 81.600 125 19 4 1503 1625 391373639 391373761 3.030000e-17 100.0
35 TraesCS2B01G250900 chr5B 81.600 125 19 4 1503 1625 471402075 471402197 3.030000e-17 100.0
36 TraesCS2B01G250900 chr7B 83.000 100 15 2 1527 1625 214071247 214071345 6.560000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G250900 chr2B 260764489 260769248 4759 True 8791.0 8791 100.000 1 4760 1 chr2B.!!$R1 4759
1 TraesCS2B01G250900 chr2B 675205680 675206445 765 False 867.0 867 87.080 178 950 1 chr2B.!!$F1 772
2 TraesCS2B01G250900 chr2A 276275947 276279211 3264 True 2310.0 2643 92.981 977 4178 2 chr2A.!!$R2 3201
3 TraesCS2B01G250900 chr2D 206632016 206637159 5143 False 1199.4 2263 95.349 971 4755 5 chr2D.!!$F2 3784
4 TraesCS2B01G250900 chr6B 624132367 624133129 762 False 1236.0 1236 95.731 177 949 1 chr6B.!!$F1 772
5 TraesCS2B01G250900 chr6B 624165138 624165900 762 False 1236.0 1236 95.731 177 949 1 chr6B.!!$F2 772
6 TraesCS2B01G250900 chr5A 658899195 658899956 761 True 965.0 965 89.433 177 951 1 chr5A.!!$R1 774
7 TraesCS2B01G250900 chr7A 731231164 731231923 759 False 929.0 929 88.645 177 950 1 chr7A.!!$F2 773
8 TraesCS2B01G250900 chr7D 56979418 56980184 766 True 702.0 702 83.290 177 949 1 chr7D.!!$R1 772
9 TraesCS2B01G250900 chr6D 411017023 411017768 745 True 523.0 523 79.365 178 933 1 chr6D.!!$R2 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.034380 TCCCGGAGACTCGTTCATCT 60.034 55.0 0.73 0.00 0.00 2.90 F
49 50 0.184451 ATGGTGAGCCTATGCCTTGG 59.816 55.0 0.00 0.00 38.69 3.61 F
51 52 0.255890 GGTGAGCCTATGCCTTGGAA 59.744 55.0 0.00 0.00 38.69 3.53 F
101 102 0.395173 TCCATCATCACGACCTCCGA 60.395 55.0 0.00 0.00 41.76 4.55 F
266 267 0.395586 TCATGGTAAGCATGCACCCC 60.396 55.0 21.98 15.82 33.61 4.95 F
1694 1705 0.493966 TTCGTTCGTTCGTTCGTTCG 59.506 50.0 9.89 7.92 0.00 3.95 F
2593 2699 0.608035 TGGACCGGTTCATTTCCAGC 60.608 55.0 12.95 0.00 33.02 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1015 1020 1.347221 GCGCTGGTACACAATACGC 59.653 57.895 0.00 3.27 38.30 4.42 R
2000 2040 1.661341 GATGACATGTGAGACCTGGC 58.339 55.000 1.15 0.00 0.00 4.85 R
2308 2370 6.763610 GGTGGACAAATTAATCTAGGACTGAG 59.236 42.308 0.00 0.00 0.00 3.35 R
2346 2408 2.128771 AAATATGCAGCAACCGGTCT 57.871 45.000 8.04 0.00 0.00 3.85 R
2454 2560 1.813786 ACACTAGAAGGACTCGTCTGC 59.186 52.381 0.00 0.00 33.85 4.26 R
3527 4892 0.395448 GGAGACGTAGGTAGGCAGGT 60.395 60.000 0.00 0.00 0.00 4.00 R
4178 5561 0.179105 ACAAACACCGTGTAGACGCA 60.179 50.000 6.94 0.00 44.68 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.936535 GGATCCCGGAGACTCGTT 58.063 61.111 0.73 0.00 0.00 3.85
18 19 1.734748 GGATCCCGGAGACTCGTTC 59.265 63.158 0.73 0.00 0.00 3.95
19 20 1.035932 GGATCCCGGAGACTCGTTCA 61.036 60.000 0.73 0.00 0.00 3.18
20 21 1.033574 GATCCCGGAGACTCGTTCAT 58.966 55.000 0.73 0.00 0.00 2.57
21 22 1.001158 GATCCCGGAGACTCGTTCATC 60.001 57.143 0.73 0.00 0.00 2.92
22 23 0.034380 TCCCGGAGACTCGTTCATCT 60.034 55.000 0.73 0.00 0.00 2.90
23 24 0.818296 CCCGGAGACTCGTTCATCTT 59.182 55.000 0.73 0.00 0.00 2.40
24 25 1.204941 CCCGGAGACTCGTTCATCTTT 59.795 52.381 0.73 0.00 0.00 2.52
25 26 2.531206 CCGGAGACTCGTTCATCTTTC 58.469 52.381 0.00 0.00 0.00 2.62
26 27 2.164624 CCGGAGACTCGTTCATCTTTCT 59.835 50.000 0.00 0.00 0.00 2.52
27 28 3.377485 CCGGAGACTCGTTCATCTTTCTA 59.623 47.826 0.00 0.00 0.00 2.10
28 29 4.036971 CCGGAGACTCGTTCATCTTTCTAT 59.963 45.833 0.00 0.00 0.00 1.98
29 30 4.973051 CGGAGACTCGTTCATCTTTCTATG 59.027 45.833 0.00 0.00 0.00 2.23
30 31 5.220873 CGGAGACTCGTTCATCTTTCTATGA 60.221 44.000 0.00 0.00 34.07 2.15
31 32 6.514212 CGGAGACTCGTTCATCTTTCTATGAT 60.514 42.308 0.00 0.00 35.84 2.45
32 33 6.640499 GGAGACTCGTTCATCTTTCTATGATG 59.360 42.308 0.00 0.00 41.75 3.07
33 34 6.511416 AGACTCGTTCATCTTTCTATGATGG 58.489 40.000 0.00 0.00 41.01 3.51
34 35 6.097554 AGACTCGTTCATCTTTCTATGATGGT 59.902 38.462 0.00 0.00 41.01 3.55
35 36 6.045318 ACTCGTTCATCTTTCTATGATGGTG 58.955 40.000 0.00 0.00 41.01 4.17
36 37 6.127338 ACTCGTTCATCTTTCTATGATGGTGA 60.127 38.462 0.00 0.00 41.01 4.02
37 38 6.276091 TCGTTCATCTTTCTATGATGGTGAG 58.724 40.000 0.00 0.00 41.01 3.51
38 39 5.050499 CGTTCATCTTTCTATGATGGTGAGC 60.050 44.000 0.00 0.00 41.01 4.26
39 40 4.965814 TCATCTTTCTATGATGGTGAGCC 58.034 43.478 0.00 0.00 41.01 4.70
40 41 4.657504 TCATCTTTCTATGATGGTGAGCCT 59.342 41.667 0.00 0.00 41.01 4.58
41 42 5.840693 TCATCTTTCTATGATGGTGAGCCTA 59.159 40.000 0.00 0.00 41.01 3.93
42 43 6.499699 TCATCTTTCTATGATGGTGAGCCTAT 59.500 38.462 0.00 0.00 41.01 2.57
43 44 6.106648 TCTTTCTATGATGGTGAGCCTATG 57.893 41.667 0.00 0.00 35.27 2.23
44 45 3.969287 TCTATGATGGTGAGCCTATGC 57.031 47.619 0.00 0.00 35.27 3.14
45 46 2.568956 TCTATGATGGTGAGCCTATGCC 59.431 50.000 0.00 0.00 38.69 4.40
46 47 1.442773 ATGATGGTGAGCCTATGCCT 58.557 50.000 0.00 0.00 38.69 4.75
47 48 1.216064 TGATGGTGAGCCTATGCCTT 58.784 50.000 0.00 0.00 38.69 4.35
48 49 1.134007 TGATGGTGAGCCTATGCCTTG 60.134 52.381 0.00 0.00 38.69 3.61
49 50 0.184451 ATGGTGAGCCTATGCCTTGG 59.816 55.000 0.00 0.00 38.69 3.61
50 51 0.913934 TGGTGAGCCTATGCCTTGGA 60.914 55.000 0.00 0.00 38.69 3.53
51 52 0.255890 GGTGAGCCTATGCCTTGGAA 59.744 55.000 0.00 0.00 38.69 3.53
52 53 1.673168 GTGAGCCTATGCCTTGGAAG 58.327 55.000 0.00 0.00 38.69 3.46
53 54 1.210478 GTGAGCCTATGCCTTGGAAGA 59.790 52.381 0.00 0.00 38.69 2.87
54 55 2.130193 TGAGCCTATGCCTTGGAAGAT 58.870 47.619 0.00 0.00 38.69 2.40
55 56 2.158711 TGAGCCTATGCCTTGGAAGATG 60.159 50.000 0.00 0.00 38.69 2.90
56 57 1.144503 AGCCTATGCCTTGGAAGATGG 59.855 52.381 0.00 0.00 38.69 3.51
57 58 1.143684 GCCTATGCCTTGGAAGATGGA 59.856 52.381 0.00 0.00 0.00 3.41
58 59 2.224967 GCCTATGCCTTGGAAGATGGAT 60.225 50.000 0.00 0.00 0.00 3.41
59 60 3.418995 CCTATGCCTTGGAAGATGGATG 58.581 50.000 0.00 0.00 0.00 3.51
60 61 3.073503 CCTATGCCTTGGAAGATGGATGA 59.926 47.826 0.00 0.00 0.00 2.92
61 62 2.425143 TGCCTTGGAAGATGGATGAC 57.575 50.000 0.00 0.00 0.00 3.06
62 63 1.634973 TGCCTTGGAAGATGGATGACA 59.365 47.619 0.00 0.00 0.00 3.58
63 64 2.041485 TGCCTTGGAAGATGGATGACAA 59.959 45.455 0.00 0.00 0.00 3.18
64 65 2.686915 GCCTTGGAAGATGGATGACAAG 59.313 50.000 0.00 0.00 36.11 3.16
65 66 2.686915 CCTTGGAAGATGGATGACAAGC 59.313 50.000 0.00 0.00 35.29 4.01
66 67 2.425143 TGGAAGATGGATGACAAGCC 57.575 50.000 0.00 0.00 0.00 4.35
67 68 1.918262 TGGAAGATGGATGACAAGCCT 59.082 47.619 0.18 0.00 31.06 4.58
68 69 3.114606 TGGAAGATGGATGACAAGCCTA 58.885 45.455 0.18 0.00 31.06 3.93
69 70 3.118261 TGGAAGATGGATGACAAGCCTAC 60.118 47.826 0.18 0.00 31.06 3.18
70 71 3.135530 GGAAGATGGATGACAAGCCTACT 59.864 47.826 0.18 0.00 31.06 2.57
71 72 4.345257 GGAAGATGGATGACAAGCCTACTA 59.655 45.833 0.18 0.00 31.06 1.82
72 73 4.946478 AGATGGATGACAAGCCTACTAC 57.054 45.455 0.18 0.00 31.06 2.73
73 74 4.290093 AGATGGATGACAAGCCTACTACA 58.710 43.478 0.18 0.00 31.06 2.74
74 75 4.904251 AGATGGATGACAAGCCTACTACAT 59.096 41.667 0.00 0.00 31.06 2.29
75 76 4.672587 TGGATGACAAGCCTACTACATC 57.327 45.455 0.00 0.00 33.87 3.06
76 77 4.030216 TGGATGACAAGCCTACTACATCA 58.970 43.478 0.00 0.00 35.09 3.07
77 78 4.469586 TGGATGACAAGCCTACTACATCAA 59.530 41.667 0.00 0.00 35.09 2.57
78 79 4.811557 GGATGACAAGCCTACTACATCAAC 59.188 45.833 0.00 0.00 35.09 3.18
79 80 4.882842 TGACAAGCCTACTACATCAACA 57.117 40.909 0.00 0.00 0.00 3.33
80 81 5.222079 TGACAAGCCTACTACATCAACAA 57.778 39.130 0.00 0.00 0.00 2.83
81 82 5.804639 TGACAAGCCTACTACATCAACAAT 58.195 37.500 0.00 0.00 0.00 2.71
82 83 6.237901 TGACAAGCCTACTACATCAACAATT 58.762 36.000 0.00 0.00 0.00 2.32
83 84 6.371548 TGACAAGCCTACTACATCAACAATTC 59.628 38.462 0.00 0.00 0.00 2.17
84 85 5.648092 ACAAGCCTACTACATCAACAATTCC 59.352 40.000 0.00 0.00 0.00 3.01
85 86 5.435686 AGCCTACTACATCAACAATTCCA 57.564 39.130 0.00 0.00 0.00 3.53
86 87 6.006275 AGCCTACTACATCAACAATTCCAT 57.994 37.500 0.00 0.00 0.00 3.41
87 88 6.058183 AGCCTACTACATCAACAATTCCATC 58.942 40.000 0.00 0.00 0.00 3.51
88 89 5.822519 GCCTACTACATCAACAATTCCATCA 59.177 40.000 0.00 0.00 0.00 3.07
89 90 6.488006 GCCTACTACATCAACAATTCCATCAT 59.512 38.462 0.00 0.00 0.00 2.45
90 91 7.308229 GCCTACTACATCAACAATTCCATCATC 60.308 40.741 0.00 0.00 0.00 2.92
91 92 7.716560 CCTACTACATCAACAATTCCATCATCA 59.283 37.037 0.00 0.00 0.00 3.07
92 93 7.325660 ACTACATCAACAATTCCATCATCAC 57.674 36.000 0.00 0.00 0.00 3.06
93 94 5.239359 ACATCAACAATTCCATCATCACG 57.761 39.130 0.00 0.00 0.00 4.35
94 95 4.943093 ACATCAACAATTCCATCATCACGA 59.057 37.500 0.00 0.00 0.00 4.35
95 96 4.944962 TCAACAATTCCATCATCACGAC 57.055 40.909 0.00 0.00 0.00 4.34
96 97 3.689161 TCAACAATTCCATCATCACGACC 59.311 43.478 0.00 0.00 0.00 4.79
97 98 3.634397 ACAATTCCATCATCACGACCT 57.366 42.857 0.00 0.00 0.00 3.85
98 99 3.535561 ACAATTCCATCATCACGACCTC 58.464 45.455 0.00 0.00 0.00 3.85
99 100 2.874701 CAATTCCATCATCACGACCTCC 59.125 50.000 0.00 0.00 0.00 4.30
100 101 0.459899 TTCCATCATCACGACCTCCG 59.540 55.000 0.00 0.00 45.44 4.63
101 102 0.395173 TCCATCATCACGACCTCCGA 60.395 55.000 0.00 0.00 41.76 4.55
102 103 0.459899 CCATCATCACGACCTCCGAA 59.540 55.000 0.00 0.00 41.76 4.30
103 104 1.536922 CCATCATCACGACCTCCGAAG 60.537 57.143 0.00 0.00 41.76 3.79
104 105 1.405463 CATCATCACGACCTCCGAAGA 59.595 52.381 0.00 0.00 41.76 2.87
105 106 1.541379 TCATCACGACCTCCGAAGAA 58.459 50.000 0.00 0.00 41.76 2.52
106 107 1.890489 TCATCACGACCTCCGAAGAAA 59.110 47.619 0.00 0.00 41.76 2.52
107 108 2.094700 TCATCACGACCTCCGAAGAAAG 60.095 50.000 0.00 0.00 41.76 2.62
108 109 1.612676 TCACGACCTCCGAAGAAAGA 58.387 50.000 0.00 0.00 41.76 2.52
109 110 1.540267 TCACGACCTCCGAAGAAAGAG 59.460 52.381 0.00 0.00 41.76 2.85
110 111 1.540267 CACGACCTCCGAAGAAAGAGA 59.460 52.381 0.00 0.00 41.76 3.10
111 112 1.540707 ACGACCTCCGAAGAAAGAGAC 59.459 52.381 0.00 0.00 41.76 3.36
112 113 1.540267 CGACCTCCGAAGAAAGAGACA 59.460 52.381 0.00 0.00 41.76 3.41
113 114 2.164624 CGACCTCCGAAGAAAGAGACAT 59.835 50.000 0.00 0.00 41.76 3.06
114 115 3.377485 CGACCTCCGAAGAAAGAGACATA 59.623 47.826 0.00 0.00 41.76 2.29
115 116 4.142447 CGACCTCCGAAGAAAGAGACATAA 60.142 45.833 0.00 0.00 41.76 1.90
116 117 5.621555 CGACCTCCGAAGAAAGAGACATAAA 60.622 44.000 0.00 0.00 41.76 1.40
117 118 6.301169 ACCTCCGAAGAAAGAGACATAAAT 57.699 37.500 0.00 0.00 0.00 1.40
118 119 7.419711 ACCTCCGAAGAAAGAGACATAAATA 57.580 36.000 0.00 0.00 0.00 1.40
119 120 7.266400 ACCTCCGAAGAAAGAGACATAAATAC 58.734 38.462 0.00 0.00 0.00 1.89
120 121 7.093465 ACCTCCGAAGAAAGAGACATAAATACA 60.093 37.037 0.00 0.00 0.00 2.29
121 122 7.928706 CCTCCGAAGAAAGAGACATAAATACAT 59.071 37.037 0.00 0.00 0.00 2.29
122 123 8.648557 TCCGAAGAAAGAGACATAAATACATG 57.351 34.615 0.00 0.00 0.00 3.21
123 124 7.710907 TCCGAAGAAAGAGACATAAATACATGG 59.289 37.037 0.00 0.00 0.00 3.66
124 125 7.041780 CCGAAGAAAGAGACATAAATACATGGG 60.042 40.741 0.00 0.00 0.00 4.00
125 126 7.495934 CGAAGAAAGAGACATAAATACATGGGT 59.504 37.037 0.00 0.00 0.00 4.51
126 127 9.832445 GAAGAAAGAGACATAAATACATGGGTA 57.168 33.333 0.00 0.00 0.00 3.69
128 129 9.784531 AGAAAGAGACATAAATACATGGGTATG 57.215 33.333 0.00 2.01 40.09 2.39
129 130 8.924511 AAAGAGACATAAATACATGGGTATGG 57.075 34.615 0.00 0.00 40.09 2.74
130 131 7.020827 AGAGACATAAATACATGGGTATGGG 57.979 40.000 0.00 0.00 40.09 4.00
131 132 5.570320 AGACATAAATACATGGGTATGGGC 58.430 41.667 0.00 0.00 40.09 5.36
132 133 5.074377 AGACATAAATACATGGGTATGGGCA 59.926 40.000 0.00 0.00 40.09 5.36
133 134 5.076873 ACATAAATACATGGGTATGGGCAC 58.923 41.667 0.00 0.00 40.09 5.01
134 135 3.971468 AAATACATGGGTATGGGCACT 57.029 42.857 0.00 0.00 40.09 4.40
135 136 3.508845 AATACATGGGTATGGGCACTC 57.491 47.619 0.00 0.00 40.09 3.51
136 137 1.136828 TACATGGGTATGGGCACTCC 58.863 55.000 0.00 0.00 38.66 3.85
146 147 3.051210 GGCACTCCCTTTGGCAAC 58.949 61.111 0.00 0.00 39.31 4.17
147 148 1.531602 GGCACTCCCTTTGGCAACT 60.532 57.895 0.00 0.00 39.31 3.16
148 149 1.662044 GCACTCCCTTTGGCAACTG 59.338 57.895 0.00 0.00 37.61 3.16
149 150 1.662044 CACTCCCTTTGGCAACTGC 59.338 57.895 0.00 0.00 41.14 4.40
166 167 2.036256 CCAAGCTTGGGGGAGGTG 59.964 66.667 34.08 9.02 44.70 4.00
167 168 2.677875 CAAGCTTGGGGGAGGTGC 60.678 66.667 19.14 0.00 0.00 5.01
168 169 3.984732 AAGCTTGGGGGAGGTGCC 61.985 66.667 0.00 0.00 0.00 5.01
216 217 9.387257 CCGGATGATGATTATGATGATTTTCTA 57.613 33.333 0.00 0.00 0.00 2.10
263 264 5.505173 AATAGTTCATGGTAAGCATGCAC 57.495 39.130 21.98 10.23 0.00 4.57
264 265 2.094675 AGTTCATGGTAAGCATGCACC 58.905 47.619 21.98 19.76 35.24 5.01
265 266 1.134946 GTTCATGGTAAGCATGCACCC 59.865 52.381 21.98 16.19 33.61 4.61
266 267 0.395586 TCATGGTAAGCATGCACCCC 60.396 55.000 21.98 15.82 33.61 4.95
267 268 1.076044 ATGGTAAGCATGCACCCCC 60.076 57.895 21.98 14.00 33.61 5.40
491 494 3.318557 ACGGACGGATCTTTTATCTCCTC 59.681 47.826 0.00 0.00 0.00 3.71
492 495 3.609644 CGGACGGATCTTTTATCTCCTCG 60.610 52.174 0.00 0.00 0.00 4.63
646 649 2.876091 CTATTCAACGAAGCGACCTCA 58.124 47.619 0.00 0.00 0.00 3.86
673 676 4.454678 TGTTGTGGAGATGGATTCTATGC 58.545 43.478 0.00 0.00 33.74 3.14
678 681 2.617532 GGAGATGGATTCTATGCAGGCC 60.618 54.545 0.00 0.00 33.74 5.19
794 797 7.168219 TGCATTGTTCATATATCTAGAACCCC 58.832 38.462 0.00 0.94 40.58 4.95
941 944 5.441500 TGAGTAATGCAATTTATTCCCCGA 58.558 37.500 0.00 0.00 37.87 5.14
967 970 3.451402 AAAGGACCTGGTTTACATCCC 57.549 47.619 0.00 0.00 29.97 3.85
968 971 2.361085 AGGACCTGGTTTACATCCCT 57.639 50.000 0.00 0.00 29.97 4.20
969 972 1.916181 AGGACCTGGTTTACATCCCTG 59.084 52.381 0.00 0.00 29.97 4.45
1015 1020 8.057536 ACTCTACAGTATACAAAGACCAAGAG 57.942 38.462 5.50 7.73 33.50 2.85
1107 1114 1.383019 GACCTTTCCTTCCACCCCC 59.617 63.158 0.00 0.00 0.00 5.40
1108 1115 2.355115 CCTTTCCTTCCACCCCCG 59.645 66.667 0.00 0.00 0.00 5.73
1177 1184 4.069232 CTTCCGCGACAGCTCCCA 62.069 66.667 8.23 0.00 42.32 4.37
1648 1655 3.214328 ACAAATTCAGAAGCACGTCCTT 58.786 40.909 0.00 0.00 0.00 3.36
1690 1701 1.114842 TCAGTTCGTTCGTTCGTTCG 58.885 50.000 2.67 0.00 0.00 3.95
1691 1702 0.841984 CAGTTCGTTCGTTCGTTCGT 59.158 50.000 9.89 0.00 0.00 3.85
1692 1703 1.253545 CAGTTCGTTCGTTCGTTCGTT 59.746 47.619 9.89 0.02 0.00 3.85
1693 1704 1.514402 AGTTCGTTCGTTCGTTCGTTC 59.486 47.619 9.89 6.42 0.00 3.95
1694 1705 0.493966 TTCGTTCGTTCGTTCGTTCG 59.506 50.000 9.89 7.92 0.00 3.95
1776 1802 4.096382 TCTTGCAACCTTCACAAAACTCTC 59.904 41.667 0.00 0.00 0.00 3.20
1777 1803 2.354510 TGCAACCTTCACAAAACTCTCG 59.645 45.455 0.00 0.00 0.00 4.04
1878 1918 4.785346 ATCAACACTGATAAGAGGCCAT 57.215 40.909 5.01 0.00 40.67 4.40
1887 1927 3.200605 TGATAAGAGGCCATGCTCAAGAA 59.799 43.478 5.01 0.00 0.00 2.52
1896 1936 4.212004 GGCCATGCTCAAGAAAAAGAAAAC 59.788 41.667 0.00 0.00 0.00 2.43
1974 2014 5.284861 TGTATTATCTCCGGCAAGCTTAA 57.715 39.130 0.00 0.00 0.00 1.85
2000 2040 7.070571 AGGTGATAAGAAGTGGGATAAGAGAAG 59.929 40.741 0.00 0.00 0.00 2.85
2059 2107 2.665649 TGTTAGTGCACCATAGACCG 57.334 50.000 14.63 0.00 0.00 4.79
2228 2290 2.537959 AAACCCATGGCCCTCCCT 60.538 61.111 6.09 0.00 0.00 4.20
2303 2365 5.181748 GTGCTTGATAGAAGAAGATGTGGT 58.818 41.667 0.00 0.00 0.00 4.16
2304 2366 5.293079 GTGCTTGATAGAAGAAGATGTGGTC 59.707 44.000 0.00 0.00 0.00 4.02
2305 2367 5.046376 TGCTTGATAGAAGAAGATGTGGTCA 60.046 40.000 0.00 0.00 0.00 4.02
2306 2368 5.523188 GCTTGATAGAAGAAGATGTGGTCAG 59.477 44.000 0.00 0.00 0.00 3.51
2307 2369 6.611613 TTGATAGAAGAAGATGTGGTCAGT 57.388 37.500 0.00 0.00 0.00 3.41
2308 2370 6.214191 TGATAGAAGAAGATGTGGTCAGTC 57.786 41.667 0.00 0.00 0.00 3.51
2325 2387 6.897966 TGGTCAGTCTCAGTCCTAGATTAATT 59.102 38.462 0.00 0.00 0.00 1.40
2329 2391 8.470805 TCAGTCTCAGTCCTAGATTAATTTGTC 58.529 37.037 0.00 0.00 0.00 3.18
2337 2399 6.884836 GTCCTAGATTAATTTGTCCACCTGTT 59.115 38.462 0.00 0.00 0.00 3.16
2338 2400 7.393515 GTCCTAGATTAATTTGTCCACCTGTTT 59.606 37.037 0.00 0.00 0.00 2.83
2339 2401 7.393234 TCCTAGATTAATTTGTCCACCTGTTTG 59.607 37.037 0.00 0.00 0.00 2.93
2340 2402 6.345096 AGATTAATTTGTCCACCTGTTTGG 57.655 37.500 0.00 0.00 42.93 3.28
2341 2403 4.946478 TTAATTTGTCCACCTGTTTGGG 57.054 40.909 0.00 0.00 41.11 4.12
2342 2404 2.470057 ATTTGTCCACCTGTTTGGGT 57.530 45.000 0.00 0.00 41.11 4.51
2377 2439 5.726397 TGCTGCATATTTTCAGATGCTTTT 58.274 33.333 0.00 0.00 46.98 2.27
2378 2440 6.865411 TGCTGCATATTTTCAGATGCTTTTA 58.135 32.000 0.00 0.00 46.98 1.52
2379 2441 7.494211 TGCTGCATATTTTCAGATGCTTTTAT 58.506 30.769 0.00 0.00 46.98 1.40
2380 2442 7.436970 TGCTGCATATTTTCAGATGCTTTTATG 59.563 33.333 0.00 0.00 46.98 1.90
2383 2445 9.656040 TGCATATTTTCAGATGCTTTTATGTTT 57.344 25.926 8.20 0.00 46.98 2.83
2405 2507 3.198417 TCTTGCATGTTGCTCTATCTCCA 59.802 43.478 0.75 0.00 45.31 3.86
2454 2560 2.892852 TCACCTTGGCATTTTTCCTGAG 59.107 45.455 0.00 0.00 0.00 3.35
2593 2699 0.608035 TGGACCGGTTCATTTCCAGC 60.608 55.000 12.95 0.00 33.02 4.85
2632 2738 2.766263 CCCTGTTCATGCTGTCCTAGTA 59.234 50.000 0.00 0.00 0.00 1.82
2844 4191 5.407407 AATGTACGAGAGTTCAGAACCAT 57.593 39.130 9.85 1.81 46.40 3.55
2933 4284 2.359214 TGCACCGTTGTAAATTGCAAGA 59.641 40.909 4.94 0.00 36.44 3.02
2940 4291 8.001549 CACCGTTGTAAATTGCAAGATAAAAAC 58.998 33.333 4.94 7.82 0.00 2.43
2995 4346 3.330110 TGGGGGTCTTTGTACGGATAAAA 59.670 43.478 0.00 0.00 0.00 1.52
3121 4472 1.982913 CCAGTTACGCGGCAAAATTTC 59.017 47.619 12.47 0.00 0.00 2.17
3229 4580 3.797184 GCTGTCGTCTCTGTCTGAAAACT 60.797 47.826 0.00 0.00 0.00 2.66
3230 4581 3.706698 TGTCGTCTCTGTCTGAAAACTG 58.293 45.455 0.00 0.00 0.00 3.16
3231 4582 2.473235 GTCGTCTCTGTCTGAAAACTGC 59.527 50.000 0.00 0.00 0.00 4.40
3517 4882 3.510360 AGCTACATATGTATCCACCGACC 59.490 47.826 15.81 0.00 0.00 4.79
3527 4892 2.708216 TCCACCGACCTATGTACGTA 57.292 50.000 0.00 0.00 0.00 3.57
3554 4919 1.964552 ACCTACGTCTCCACTATCCG 58.035 55.000 0.00 0.00 0.00 4.18
3835 5209 3.912248 TCCAAGTCTCTATACCCAGTCC 58.088 50.000 0.00 0.00 0.00 3.85
3843 5217 4.481280 TCTCTATACCCAGTCCCTAGTGTT 59.519 45.833 0.00 0.00 0.00 3.32
3846 5220 6.027482 TCTATACCCAGTCCCTAGTGTTTTT 58.973 40.000 0.00 0.00 0.00 1.94
3890 5271 1.760029 GGTTTTCACTTGGCCTTTCCA 59.240 47.619 3.32 0.00 44.85 3.53
3909 5290 3.054065 TCCAAACCAACCAGGCAATTTTT 60.054 39.130 0.00 0.00 43.14 1.94
3919 5300 3.698539 CCAGGCAATTTTTGGTTTTTGGT 59.301 39.130 0.00 0.00 0.00 3.67
3923 5304 5.356751 AGGCAATTTTTGGTTTTTGGTTCTC 59.643 36.000 0.00 0.00 0.00 2.87
3940 5321 7.696992 TGGTTCTCATGTTTCCTTATAAACC 57.303 36.000 0.00 0.00 38.35 3.27
3942 5323 7.947890 TGGTTCTCATGTTTCCTTATAAACCTT 59.052 33.333 0.00 0.00 38.35 3.50
4115 5497 3.025619 CGCCATGGATTTCGAGCC 58.974 61.111 18.40 0.00 0.00 4.70
4131 5514 0.786435 AGCCCCAAATTTCACTCCCT 59.214 50.000 0.00 0.00 0.00 4.20
4181 5564 8.020819 TCTGAAAAAGAACAAACCTATAATGCG 58.979 33.333 0.00 0.00 29.54 4.73
4182 5565 7.653647 TGAAAAAGAACAAACCTATAATGCGT 58.346 30.769 0.00 0.00 0.00 5.24
4183 5566 7.806014 TGAAAAAGAACAAACCTATAATGCGTC 59.194 33.333 0.00 0.00 0.00 5.19
4184 5567 7.448748 AAAAGAACAAACCTATAATGCGTCT 57.551 32.000 0.00 0.00 0.00 4.18
4187 5570 6.636705 AGAACAAACCTATAATGCGTCTACA 58.363 36.000 0.00 0.00 0.00 2.74
4188 5571 6.534079 AGAACAAACCTATAATGCGTCTACAC 59.466 38.462 0.00 0.00 0.00 2.90
4190 5573 3.637998 ACCTATAATGCGTCTACACGG 57.362 47.619 0.00 0.00 46.80 4.94
4191 5574 2.954318 ACCTATAATGCGTCTACACGGT 59.046 45.455 0.00 0.00 46.80 4.83
4192 5575 3.243301 ACCTATAATGCGTCTACACGGTG 60.243 47.826 6.58 6.58 46.80 4.94
4193 5576 2.953466 ATAATGCGTCTACACGGTGT 57.047 45.000 18.89 18.89 46.80 4.16
4194 5577 2.728690 TAATGCGTCTACACGGTGTT 57.271 45.000 20.15 3.83 46.80 3.32
4195 5578 1.873698 AATGCGTCTACACGGTGTTT 58.126 45.000 20.15 2.58 46.80 2.83
4196 5579 1.144969 ATGCGTCTACACGGTGTTTG 58.855 50.000 20.15 12.66 46.80 2.93
4198 5581 0.505655 GCGTCTACACGGTGTTTGTC 59.494 55.000 20.15 9.54 46.80 3.18
4200 5583 2.195096 CGTCTACACGGTGTTTGTCAA 58.805 47.619 20.15 0.00 42.73 3.18
4201 5584 2.798283 CGTCTACACGGTGTTTGTCAAT 59.202 45.455 20.15 0.00 42.73 2.57
4202 5585 3.362596 CGTCTACACGGTGTTTGTCAATG 60.363 47.826 20.15 1.36 42.73 2.82
4204 5587 4.034742 GTCTACACGGTGTTTGTCAATGTT 59.965 41.667 20.15 0.00 0.00 2.71
4205 5588 5.234757 GTCTACACGGTGTTTGTCAATGTTA 59.765 40.000 20.15 0.00 0.00 2.41
4206 5589 4.545823 ACACGGTGTTTGTCAATGTTAG 57.454 40.909 8.21 0.00 0.00 2.34
4207 5590 4.193090 ACACGGTGTTTGTCAATGTTAGA 58.807 39.130 8.21 0.00 0.00 2.10
4210 5593 6.183360 ACACGGTGTTTGTCAATGTTAGATTT 60.183 34.615 8.21 0.00 0.00 2.17
4211 5594 7.012515 ACACGGTGTTTGTCAATGTTAGATTTA 59.987 33.333 8.21 0.00 0.00 1.40
4212 5595 8.020819 CACGGTGTTTGTCAATGTTAGATTTAT 58.979 33.333 0.00 0.00 0.00 1.40
4213 5596 9.221933 ACGGTGTTTGTCAATGTTAGATTTATA 57.778 29.630 0.00 0.00 0.00 0.98
4214 5597 9.702726 CGGTGTTTGTCAATGTTAGATTTATAG 57.297 33.333 0.00 0.00 0.00 1.31
4292 5804 3.181434 TGTGACAAGGGTTTATGGAGCTT 60.181 43.478 0.00 0.00 0.00 3.74
4303 5815 5.758784 GGTTTATGGAGCTTGGTATCTACAC 59.241 44.000 0.00 0.00 0.00 2.90
4316 5828 2.354891 TACACGCACCCAACGTCG 60.355 61.111 0.00 0.00 42.96 5.12
4326 5838 2.333938 CAACGTCGAGGACACGGT 59.666 61.111 12.85 0.00 41.73 4.83
4362 5874 5.468540 TTCAGTGAAGTAAGAAGCTAGCA 57.531 39.130 18.83 0.00 0.00 3.49
4363 5875 5.667539 TCAGTGAAGTAAGAAGCTAGCAT 57.332 39.130 18.83 4.30 0.00 3.79
4364 5876 6.775594 TCAGTGAAGTAAGAAGCTAGCATA 57.224 37.500 18.83 1.43 0.00 3.14
4365 5877 6.800543 TCAGTGAAGTAAGAAGCTAGCATAG 58.199 40.000 18.83 0.00 43.09 2.23
4366 5878 5.982516 CAGTGAAGTAAGAAGCTAGCATAGG 59.017 44.000 18.83 0.00 39.70 2.57
4367 5879 5.894393 AGTGAAGTAAGAAGCTAGCATAGGA 59.106 40.000 18.83 0.00 39.70 2.94
4368 5880 6.553100 AGTGAAGTAAGAAGCTAGCATAGGAT 59.447 38.462 18.83 0.18 39.70 3.24
4369 5881 6.644592 GTGAAGTAAGAAGCTAGCATAGGATG 59.355 42.308 18.83 0.00 39.70 3.51
4386 5898 3.435186 GCTTGGGAGCGTTGAGGC 61.435 66.667 0.00 0.00 39.48 4.70
4388 5900 1.302832 CTTGGGAGCGTTGAGGCTT 60.303 57.895 0.00 0.00 44.93 4.35
4389 5901 0.890996 CTTGGGAGCGTTGAGGCTTT 60.891 55.000 0.00 0.00 44.93 3.51
4390 5902 0.467290 TTGGGAGCGTTGAGGCTTTT 60.467 50.000 0.00 0.00 44.93 2.27
4391 5903 0.398696 TGGGAGCGTTGAGGCTTTTA 59.601 50.000 0.00 0.00 44.93 1.52
4392 5904 1.202830 TGGGAGCGTTGAGGCTTTTAA 60.203 47.619 0.00 0.00 44.93 1.52
4393 5905 1.199327 GGGAGCGTTGAGGCTTTTAAC 59.801 52.381 0.00 0.00 44.93 2.01
4394 5906 1.877443 GGAGCGTTGAGGCTTTTAACA 59.123 47.619 0.00 0.00 44.93 2.41
4395 5907 2.488153 GGAGCGTTGAGGCTTTTAACAT 59.512 45.455 0.00 0.25 44.93 2.71
4396 5908 3.057526 GGAGCGTTGAGGCTTTTAACATT 60.058 43.478 0.00 0.00 44.93 2.71
4397 5909 4.159120 GAGCGTTGAGGCTTTTAACATTC 58.841 43.478 0.00 4.31 44.93 2.67
4398 5910 3.568007 AGCGTTGAGGCTTTTAACATTCA 59.432 39.130 9.73 0.00 41.39 2.57
4399 5911 3.914364 GCGTTGAGGCTTTTAACATTCAG 59.086 43.478 9.73 0.00 0.00 3.02
4400 5912 4.556699 GCGTTGAGGCTTTTAACATTCAGT 60.557 41.667 9.73 0.00 0.00 3.41
4401 5913 4.911610 CGTTGAGGCTTTTAACATTCAGTG 59.088 41.667 9.73 0.00 0.00 3.66
4402 5914 5.277779 CGTTGAGGCTTTTAACATTCAGTGA 60.278 40.000 9.73 0.00 0.00 3.41
4403 5915 6.503524 GTTGAGGCTTTTAACATTCAGTGAA 58.496 36.000 8.27 8.27 0.00 3.18
4404 5916 6.317789 TGAGGCTTTTAACATTCAGTGAAG 57.682 37.500 11.91 6.29 0.00 3.02
4405 5917 5.827797 TGAGGCTTTTAACATTCAGTGAAGT 59.172 36.000 11.91 6.90 0.00 3.01
4406 5918 6.995686 TGAGGCTTTTAACATTCAGTGAAGTA 59.004 34.615 11.91 1.06 0.00 2.24
4407 5919 7.500892 TGAGGCTTTTAACATTCAGTGAAGTAA 59.499 33.333 11.91 6.97 0.00 2.24
4408 5920 7.875971 AGGCTTTTAACATTCAGTGAAGTAAG 58.124 34.615 11.91 10.44 0.00 2.34
4409 5921 7.719633 AGGCTTTTAACATTCAGTGAAGTAAGA 59.280 33.333 11.91 4.72 0.00 2.10
4410 5922 8.349983 GGCTTTTAACATTCAGTGAAGTAAGAA 58.650 33.333 11.91 1.27 0.00 2.52
4411 5923 9.387123 GCTTTTAACATTCAGTGAAGTAAGAAG 57.613 33.333 11.91 11.17 0.00 2.85
4412 5924 9.387123 CTTTTAACATTCAGTGAAGTAAGAAGC 57.613 33.333 11.91 0.00 0.00 3.86
4413 5925 8.677148 TTTAACATTCAGTGAAGTAAGAAGCT 57.323 30.769 11.91 0.00 0.00 3.74
4414 5926 9.772973 TTTAACATTCAGTGAAGTAAGAAGCTA 57.227 29.630 11.91 0.00 0.00 3.32
4415 5927 7.897575 AACATTCAGTGAAGTAAGAAGCTAG 57.102 36.000 11.91 0.00 0.00 3.42
4416 5928 5.872070 ACATTCAGTGAAGTAAGAAGCTAGC 59.128 40.000 11.91 6.62 0.00 3.42
4417 5929 5.468540 TTCAGTGAAGTAAGAAGCTAGCA 57.531 39.130 18.83 0.00 0.00 3.49
4496 6008 1.586154 GGCACAATCAGTTCACCGGG 61.586 60.000 6.32 0.00 0.00 5.73
4500 6012 1.375523 AATCAGTTCACCGGGCGTC 60.376 57.895 6.32 0.00 0.00 5.19
4501 6013 2.107041 AATCAGTTCACCGGGCGTCA 62.107 55.000 6.32 0.00 0.00 4.35
4543 6055 6.988622 TTTTGAAAACAGTTACCTTCGAGA 57.011 33.333 0.00 0.00 0.00 4.04
4555 6067 3.665190 ACCTTCGAGAATTTGTGGACTC 58.335 45.455 0.00 0.00 0.00 3.36
4568 6080 4.558226 TGTGGACTCTTGACATTGCTAT 57.442 40.909 0.00 0.00 0.00 2.97
4576 6088 5.244626 ACTCTTGACATTGCTATTTTGCCTT 59.755 36.000 0.00 0.00 0.00 4.35
4579 6091 2.931969 GACATTGCTATTTTGCCTTGCC 59.068 45.455 0.00 0.00 0.00 4.52
4582 6094 0.896923 TGCTATTTTGCCTTGCCTGG 59.103 50.000 0.00 0.00 0.00 4.45
4593 6105 2.228059 CCTTGCCTGGCTCTCATAATG 58.772 52.381 21.03 0.00 0.00 1.90
4612 6124 9.702494 TCATAATGATATTAGTGTCTTGCAGAG 57.298 33.333 0.00 0.00 0.00 3.35
4631 6143 6.204301 TGCAGAGATATCATCTTTTTGCTAGC 59.796 38.462 8.10 8.10 40.38 3.42
4649 6161 1.379642 GCCTAGCAAGTGGTGATGCC 61.380 60.000 0.00 0.00 43.57 4.40
4653 6165 2.401766 GCAAGTGGTGATGCCTCGG 61.402 63.158 0.00 0.00 36.56 4.63
4689 6201 5.600696 AGGTGAACAAACATGATTTTGACC 58.399 37.500 13.93 11.09 38.54 4.02
4703 6215 9.276590 CATGATTTTGACCAATGCTACTATCTA 57.723 33.333 0.00 0.00 0.00 1.98
4748 6260 7.223584 TCCTGATCAACATTTGTGAAGACTAA 58.776 34.615 0.00 0.00 0.00 2.24
4749 6261 7.884877 TCCTGATCAACATTTGTGAAGACTAAT 59.115 33.333 0.00 0.00 0.00 1.73
4755 6267 9.567776 TCAACATTTGTGAAGACTAATCCTAAA 57.432 29.630 0.00 0.00 0.00 1.85
4758 6270 8.515414 ACATTTGTGAAGACTAATCCTAAAAGC 58.485 33.333 0.00 0.00 0.00 3.51
4759 6271 8.514594 CATTTGTGAAGACTAATCCTAAAAGCA 58.485 33.333 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.035932 TGAACGAGTCTCCGGGATCC 61.036 60.000 1.92 1.92 0.00 3.36
1 2 1.001158 GATGAACGAGTCTCCGGGATC 60.001 57.143 0.00 0.00 0.00 3.36
3 4 0.034380 AGATGAACGAGTCTCCGGGA 60.034 55.000 0.00 0.00 0.00 5.14
4 5 0.818296 AAGATGAACGAGTCTCCGGG 59.182 55.000 0.00 0.00 0.00 5.73
5 6 2.164624 AGAAAGATGAACGAGTCTCCGG 59.835 50.000 0.00 0.00 0.00 5.14
6 7 3.495670 AGAAAGATGAACGAGTCTCCG 57.504 47.619 0.00 0.00 0.00 4.63
7 8 6.137794 TCATAGAAAGATGAACGAGTCTCC 57.862 41.667 0.00 0.00 32.84 3.71
8 9 6.640499 CCATCATAGAAAGATGAACGAGTCTC 59.360 42.308 4.84 0.00 44.34 3.36
9 10 6.097554 ACCATCATAGAAAGATGAACGAGTCT 59.902 38.462 4.84 0.00 44.34 3.24
10 11 6.199908 CACCATCATAGAAAGATGAACGAGTC 59.800 42.308 4.84 0.00 44.34 3.36
11 12 6.045318 CACCATCATAGAAAGATGAACGAGT 58.955 40.000 4.84 0.00 44.34 4.18
12 13 6.276091 TCACCATCATAGAAAGATGAACGAG 58.724 40.000 4.84 0.00 44.34 4.18
13 14 6.220726 TCACCATCATAGAAAGATGAACGA 57.779 37.500 4.84 0.00 44.34 3.85
14 15 5.050499 GCTCACCATCATAGAAAGATGAACG 60.050 44.000 4.84 0.00 44.34 3.95
15 16 5.238214 GGCTCACCATCATAGAAAGATGAAC 59.762 44.000 4.84 0.00 44.34 3.18
16 17 5.131642 AGGCTCACCATCATAGAAAGATGAA 59.868 40.000 4.84 0.00 44.34 2.57
17 18 4.657504 AGGCTCACCATCATAGAAAGATGA 59.342 41.667 4.84 0.00 44.34 2.92
18 19 4.970711 AGGCTCACCATCATAGAAAGATG 58.029 43.478 0.00 0.00 41.91 2.90
19 20 6.709281 CATAGGCTCACCATCATAGAAAGAT 58.291 40.000 0.00 0.00 39.06 2.40
20 21 5.512060 GCATAGGCTCACCATCATAGAAAGA 60.512 44.000 0.00 0.00 39.06 2.52
21 22 4.694509 GCATAGGCTCACCATCATAGAAAG 59.305 45.833 0.00 0.00 39.06 2.62
22 23 4.505566 GGCATAGGCTCACCATCATAGAAA 60.506 45.833 0.00 0.00 40.87 2.52
23 24 3.008375 GGCATAGGCTCACCATCATAGAA 59.992 47.826 0.00 0.00 40.87 2.10
24 25 2.568956 GGCATAGGCTCACCATCATAGA 59.431 50.000 0.00 0.00 40.87 1.98
25 26 2.570752 AGGCATAGGCTCACCATCATAG 59.429 50.000 0.00 0.00 40.87 2.23
26 27 2.624495 AGGCATAGGCTCACCATCATA 58.376 47.619 0.00 0.00 40.87 2.15
27 28 1.442773 AGGCATAGGCTCACCATCAT 58.557 50.000 0.00 0.00 40.87 2.45
28 29 1.134007 CAAGGCATAGGCTCACCATCA 60.134 52.381 0.00 0.00 37.50 3.07
29 30 1.602311 CAAGGCATAGGCTCACCATC 58.398 55.000 0.00 0.00 37.50 3.51
30 31 0.184451 CCAAGGCATAGGCTCACCAT 59.816 55.000 0.00 0.00 37.50 3.55
31 32 0.913934 TCCAAGGCATAGGCTCACCA 60.914 55.000 0.00 0.00 37.50 4.17
32 33 0.255890 TTCCAAGGCATAGGCTCACC 59.744 55.000 0.00 0.00 37.50 4.02
33 34 1.210478 TCTTCCAAGGCATAGGCTCAC 59.790 52.381 0.00 0.00 37.50 3.51
34 35 1.583556 TCTTCCAAGGCATAGGCTCA 58.416 50.000 0.00 0.00 37.50 4.26
35 36 2.502295 CATCTTCCAAGGCATAGGCTC 58.498 52.381 0.00 0.00 37.50 4.70
36 37 1.144503 CCATCTTCCAAGGCATAGGCT 59.855 52.381 0.00 0.00 41.24 4.58
37 38 1.143684 TCCATCTTCCAAGGCATAGGC 59.856 52.381 0.00 0.00 40.13 3.93
38 39 3.073503 TCATCCATCTTCCAAGGCATAGG 59.926 47.826 0.00 0.00 0.00 2.57
39 40 4.070716 GTCATCCATCTTCCAAGGCATAG 58.929 47.826 0.00 0.00 0.00 2.23
40 41 3.459227 TGTCATCCATCTTCCAAGGCATA 59.541 43.478 0.00 0.00 0.00 3.14
41 42 2.242965 TGTCATCCATCTTCCAAGGCAT 59.757 45.455 0.00 0.00 0.00 4.40
42 43 1.634973 TGTCATCCATCTTCCAAGGCA 59.365 47.619 0.00 0.00 0.00 4.75
43 44 2.425143 TGTCATCCATCTTCCAAGGC 57.575 50.000 0.00 0.00 0.00 4.35
44 45 2.686915 GCTTGTCATCCATCTTCCAAGG 59.313 50.000 0.00 0.00 32.09 3.61
45 46 2.686915 GGCTTGTCATCCATCTTCCAAG 59.313 50.000 0.00 0.00 34.03 3.61
46 47 2.309755 AGGCTTGTCATCCATCTTCCAA 59.690 45.455 0.00 0.00 0.00 3.53
47 48 1.918262 AGGCTTGTCATCCATCTTCCA 59.082 47.619 0.00 0.00 0.00 3.53
48 49 2.725221 AGGCTTGTCATCCATCTTCC 57.275 50.000 0.00 0.00 0.00 3.46
49 50 4.414337 AGTAGGCTTGTCATCCATCTTC 57.586 45.455 0.00 0.00 0.00 2.87
50 51 4.716784 TGTAGTAGGCTTGTCATCCATCTT 59.283 41.667 0.00 0.00 0.00 2.40
51 52 4.290093 TGTAGTAGGCTTGTCATCCATCT 58.710 43.478 0.00 0.00 0.00 2.90
52 53 4.672587 TGTAGTAGGCTTGTCATCCATC 57.327 45.455 0.00 0.00 0.00 3.51
53 54 4.655649 TGATGTAGTAGGCTTGTCATCCAT 59.344 41.667 0.00 0.00 33.20 3.41
54 55 4.030216 TGATGTAGTAGGCTTGTCATCCA 58.970 43.478 0.00 0.00 33.20 3.41
55 56 4.672587 TGATGTAGTAGGCTTGTCATCC 57.327 45.455 0.00 0.00 33.20 3.51
56 57 5.419542 TGTTGATGTAGTAGGCTTGTCATC 58.580 41.667 0.00 3.66 34.28 2.92
57 58 5.420725 TGTTGATGTAGTAGGCTTGTCAT 57.579 39.130 0.00 0.00 0.00 3.06
58 59 4.882842 TGTTGATGTAGTAGGCTTGTCA 57.117 40.909 0.00 0.00 0.00 3.58
59 60 6.183360 GGAATTGTTGATGTAGTAGGCTTGTC 60.183 42.308 0.00 0.00 0.00 3.18
60 61 5.648092 GGAATTGTTGATGTAGTAGGCTTGT 59.352 40.000 0.00 0.00 0.00 3.16
61 62 5.647658 TGGAATTGTTGATGTAGTAGGCTTG 59.352 40.000 0.00 0.00 0.00 4.01
62 63 5.815581 TGGAATTGTTGATGTAGTAGGCTT 58.184 37.500 0.00 0.00 0.00 4.35
63 64 5.435686 TGGAATTGTTGATGTAGTAGGCT 57.564 39.130 0.00 0.00 0.00 4.58
64 65 5.822519 TGATGGAATTGTTGATGTAGTAGGC 59.177 40.000 0.00 0.00 0.00 3.93
65 66 7.716560 TGATGATGGAATTGTTGATGTAGTAGG 59.283 37.037 0.00 0.00 0.00 3.18
66 67 8.554528 GTGATGATGGAATTGTTGATGTAGTAG 58.445 37.037 0.00 0.00 0.00 2.57
67 68 7.224557 CGTGATGATGGAATTGTTGATGTAGTA 59.775 37.037 0.00 0.00 0.00 1.82
68 69 6.037500 CGTGATGATGGAATTGTTGATGTAGT 59.962 38.462 0.00 0.00 0.00 2.73
69 70 6.258507 TCGTGATGATGGAATTGTTGATGTAG 59.741 38.462 0.00 0.00 0.00 2.74
70 71 6.037062 GTCGTGATGATGGAATTGTTGATGTA 59.963 38.462 0.00 0.00 0.00 2.29
71 72 4.943093 TCGTGATGATGGAATTGTTGATGT 59.057 37.500 0.00 0.00 0.00 3.06
72 73 5.268544 GTCGTGATGATGGAATTGTTGATG 58.731 41.667 0.00 0.00 0.00 3.07
73 74 4.336433 GGTCGTGATGATGGAATTGTTGAT 59.664 41.667 0.00 0.00 0.00 2.57
74 75 3.689161 GGTCGTGATGATGGAATTGTTGA 59.311 43.478 0.00 0.00 0.00 3.18
75 76 3.691118 AGGTCGTGATGATGGAATTGTTG 59.309 43.478 0.00 0.00 0.00 3.33
76 77 3.941483 GAGGTCGTGATGATGGAATTGTT 59.059 43.478 0.00 0.00 0.00 2.83
77 78 3.535561 GAGGTCGTGATGATGGAATTGT 58.464 45.455 0.00 0.00 0.00 2.71
78 79 2.874701 GGAGGTCGTGATGATGGAATTG 59.125 50.000 0.00 0.00 0.00 2.32
79 80 2.483714 CGGAGGTCGTGATGATGGAATT 60.484 50.000 0.00 0.00 0.00 2.17
80 81 1.069204 CGGAGGTCGTGATGATGGAAT 59.931 52.381 0.00 0.00 0.00 3.01
81 82 0.459899 CGGAGGTCGTGATGATGGAA 59.540 55.000 0.00 0.00 0.00 3.53
82 83 0.395173 TCGGAGGTCGTGATGATGGA 60.395 55.000 0.00 0.00 40.32 3.41
83 84 0.459899 TTCGGAGGTCGTGATGATGG 59.540 55.000 0.00 0.00 40.32 3.51
84 85 1.405463 TCTTCGGAGGTCGTGATGATG 59.595 52.381 0.00 0.00 40.32 3.07
85 86 1.763968 TCTTCGGAGGTCGTGATGAT 58.236 50.000 0.00 0.00 40.32 2.45
86 87 1.541379 TTCTTCGGAGGTCGTGATGA 58.459 50.000 0.00 0.00 40.32 2.92
87 88 2.094700 TCTTTCTTCGGAGGTCGTGATG 60.095 50.000 0.00 0.00 40.32 3.07
88 89 2.164624 CTCTTTCTTCGGAGGTCGTGAT 59.835 50.000 0.00 0.00 40.32 3.06
89 90 1.540267 CTCTTTCTTCGGAGGTCGTGA 59.460 52.381 0.00 0.00 40.32 4.35
90 91 1.540267 TCTCTTTCTTCGGAGGTCGTG 59.460 52.381 0.00 0.00 40.32 4.35
91 92 1.540707 GTCTCTTTCTTCGGAGGTCGT 59.459 52.381 0.00 0.00 40.32 4.34
92 93 1.540267 TGTCTCTTTCTTCGGAGGTCG 59.460 52.381 0.00 0.00 40.90 4.79
93 94 3.878160 ATGTCTCTTTCTTCGGAGGTC 57.122 47.619 0.00 0.00 0.00 3.85
94 95 5.740290 TTTATGTCTCTTTCTTCGGAGGT 57.260 39.130 0.00 0.00 0.00 3.85
95 96 7.265673 TGTATTTATGTCTCTTTCTTCGGAGG 58.734 38.462 0.00 0.00 0.00 4.30
96 97 8.759641 CATGTATTTATGTCTCTTTCTTCGGAG 58.240 37.037 0.00 0.00 0.00 4.63
97 98 7.710907 CCATGTATTTATGTCTCTTTCTTCGGA 59.289 37.037 0.00 0.00 0.00 4.55
98 99 7.041780 CCCATGTATTTATGTCTCTTTCTTCGG 60.042 40.741 0.00 0.00 0.00 4.30
99 100 7.495934 ACCCATGTATTTATGTCTCTTTCTTCG 59.504 37.037 0.00 0.00 0.00 3.79
100 101 8.738645 ACCCATGTATTTATGTCTCTTTCTTC 57.261 34.615 0.00 0.00 0.00 2.87
102 103 9.784531 CATACCCATGTATTTATGTCTCTTTCT 57.215 33.333 0.00 0.00 35.46 2.52
103 104 9.003658 CCATACCCATGTATTTATGTCTCTTTC 57.996 37.037 0.00 0.00 35.46 2.62
104 105 7.944554 CCCATACCCATGTATTTATGTCTCTTT 59.055 37.037 0.00 0.00 35.46 2.52
105 106 7.461749 CCCATACCCATGTATTTATGTCTCTT 58.538 38.462 0.00 0.00 35.46 2.85
106 107 6.522459 GCCCATACCCATGTATTTATGTCTCT 60.522 42.308 0.00 0.00 35.46 3.10
107 108 5.648092 GCCCATACCCATGTATTTATGTCTC 59.352 44.000 0.00 0.00 35.46 3.36
108 109 5.074377 TGCCCATACCCATGTATTTATGTCT 59.926 40.000 0.00 0.00 35.46 3.41
109 110 5.183140 GTGCCCATACCCATGTATTTATGTC 59.817 44.000 0.00 0.00 35.46 3.06
110 111 5.076873 GTGCCCATACCCATGTATTTATGT 58.923 41.667 0.00 0.00 35.46 2.29
111 112 5.324409 AGTGCCCATACCCATGTATTTATG 58.676 41.667 0.00 0.00 35.46 1.90
112 113 5.516591 GGAGTGCCCATACCCATGTATTTAT 60.517 44.000 0.00 0.00 35.46 1.40
113 114 4.202524 GGAGTGCCCATACCCATGTATTTA 60.203 45.833 0.00 0.00 35.46 1.40
114 115 3.436470 GGAGTGCCCATACCCATGTATTT 60.436 47.826 0.00 0.00 35.46 1.40
115 116 2.108250 GGAGTGCCCATACCCATGTATT 59.892 50.000 0.00 0.00 35.46 1.89
116 117 1.705186 GGAGTGCCCATACCCATGTAT 59.295 52.381 0.00 0.00 38.21 2.29
117 118 1.136828 GGAGTGCCCATACCCATGTA 58.863 55.000 0.00 0.00 34.14 2.29
118 119 1.922821 GGAGTGCCCATACCCATGT 59.077 57.895 0.00 0.00 34.14 3.21
119 120 4.907457 GGAGTGCCCATACCCATG 57.093 61.111 0.00 0.00 34.14 3.66
129 130 1.531602 AGTTGCCAAAGGGAGTGCC 60.532 57.895 0.00 0.00 35.59 5.01
130 131 1.662044 CAGTTGCCAAAGGGAGTGC 59.338 57.895 0.00 0.00 35.59 4.40
131 132 1.662044 GCAGTTGCCAAAGGGAGTG 59.338 57.895 0.00 0.00 35.59 3.51
132 133 4.181051 GCAGTTGCCAAAGGGAGT 57.819 55.556 0.00 0.00 35.59 3.85
150 151 2.677875 GCACCTCCCCCAAGCTTG 60.678 66.667 19.93 19.93 0.00 4.01
151 152 3.984732 GGCACCTCCCCCAAGCTT 61.985 66.667 0.00 0.00 0.00 3.74
164 165 0.468226 TCATTCAGATACCGGGGCAC 59.532 55.000 6.32 0.00 0.00 5.01
165 166 0.758734 CTCATTCAGATACCGGGGCA 59.241 55.000 6.32 0.00 0.00 5.36
166 167 0.035458 CCTCATTCAGATACCGGGGC 59.965 60.000 6.32 0.00 0.00 5.80
167 168 1.424638 ACCTCATTCAGATACCGGGG 58.575 55.000 6.32 0.00 0.00 5.73
168 169 2.485479 CCAACCTCATTCAGATACCGGG 60.485 54.545 6.32 0.00 0.00 5.73
169 170 2.838736 CCAACCTCATTCAGATACCGG 58.161 52.381 0.00 0.00 0.00 5.28
170 171 2.213499 GCCAACCTCATTCAGATACCG 58.787 52.381 0.00 0.00 0.00 4.02
171 172 2.576615 GGCCAACCTCATTCAGATACC 58.423 52.381 0.00 0.00 0.00 2.73
172 173 2.213499 CGGCCAACCTCATTCAGATAC 58.787 52.381 2.24 0.00 0.00 2.24
173 174 1.140852 CCGGCCAACCTCATTCAGATA 59.859 52.381 2.24 0.00 0.00 1.98
174 175 0.107017 CCGGCCAACCTCATTCAGAT 60.107 55.000 2.24 0.00 0.00 2.90
175 176 1.198094 TCCGGCCAACCTCATTCAGA 61.198 55.000 2.24 0.00 0.00 3.27
216 217 5.716228 TCATTCCTTACAAACCATGATTGCT 59.284 36.000 10.11 2.89 0.00 3.91
393 394 5.008331 TCATTAGTAGACCTCACAACTCGT 58.992 41.667 0.00 0.00 0.00 4.18
446 447 2.649531 AAGTTTGTTCCATCCCGTGA 57.350 45.000 0.00 0.00 0.00 4.35
603 606 1.632589 AGGAAAAACCCTCCATGCAC 58.367 50.000 0.00 0.00 40.05 4.57
646 649 3.634397 ATCCATCTCCACAACAATCGT 57.366 42.857 0.00 0.00 0.00 3.73
673 676 0.531532 GAGATCATGGACACGGCCTG 60.532 60.000 0.00 0.21 0.00 4.85
950 953 1.682087 GCAGGGATGTAAACCAGGTCC 60.682 57.143 0.00 0.00 0.00 4.46
952 955 0.331616 GGCAGGGATGTAAACCAGGT 59.668 55.000 0.00 0.00 0.00 4.00
953 956 0.748005 CGGCAGGGATGTAAACCAGG 60.748 60.000 0.00 0.00 0.00 4.45
954 957 0.035439 ACGGCAGGGATGTAAACCAG 60.035 55.000 0.00 0.00 0.00 4.00
955 958 0.322098 CACGGCAGGGATGTAAACCA 60.322 55.000 0.00 0.00 0.00 3.67
956 959 1.654023 GCACGGCAGGGATGTAAACC 61.654 60.000 0.00 0.00 0.00 3.27
957 960 1.654023 GGCACGGCAGGGATGTAAAC 61.654 60.000 0.00 0.00 0.00 2.01
958 961 1.377987 GGCACGGCAGGGATGTAAA 60.378 57.895 0.00 0.00 0.00 2.01
959 962 0.978667 TAGGCACGGCAGGGATGTAA 60.979 55.000 0.00 0.00 0.00 2.41
960 963 1.382009 TAGGCACGGCAGGGATGTA 60.382 57.895 0.00 0.00 0.00 2.29
961 964 2.687200 TAGGCACGGCAGGGATGT 60.687 61.111 0.00 0.00 0.00 3.06
962 965 2.203070 GTAGGCACGGCAGGGATG 60.203 66.667 0.00 0.00 0.00 3.51
963 966 3.849951 CGTAGGCACGGCAGGGAT 61.850 66.667 0.00 0.00 44.59 3.85
1015 1020 1.347221 GCGCTGGTACACAATACGC 59.653 57.895 0.00 3.27 38.30 4.42
1177 1184 3.680777 AGCTAGTTAGGGCTCTTCTCT 57.319 47.619 0.00 0.00 32.98 3.10
1559 1566 2.031012 CACGACAGCAGCCTTGGA 59.969 61.111 0.00 0.00 0.00 3.53
1648 1655 8.962884 TGATCATGAAGAAAATCGATCCTAAA 57.037 30.769 0.00 0.00 0.00 1.85
1690 1701 9.408069 CATATATGGAGTACCTTTAGAACGAAC 57.592 37.037 4.68 0.00 37.04 3.95
1691 1702 9.358406 TCATATATGGAGTACCTTTAGAACGAA 57.642 33.333 12.78 0.00 37.04 3.85
1692 1703 8.929260 TCATATATGGAGTACCTTTAGAACGA 57.071 34.615 12.78 0.00 37.04 3.85
1693 1704 9.408069 GTTCATATATGGAGTACCTTTAGAACG 57.592 37.037 12.78 0.00 37.04 3.95
1776 1802 6.648725 AATCGTCTTAGAATTTCCACTTCG 57.351 37.500 0.00 0.00 0.00 3.79
1777 1803 8.029642 TGAAATCGTCTTAGAATTTCCACTTC 57.970 34.615 13.59 0.00 32.10 3.01
1878 1918 9.950680 CACTAATAGTTTTCTTTTTCTTGAGCA 57.049 29.630 0.00 0.00 0.00 4.26
1887 1927 9.350951 AGTAACCTGCACTAATAGTTTTCTTTT 57.649 29.630 0.00 0.00 0.00 2.27
1896 1936 7.849804 ATGAAACAGTAACCTGCACTAATAG 57.150 36.000 0.00 0.00 42.81 1.73
1974 2014 6.444704 TCTCTTATCCCACTTCTTATCACCT 58.555 40.000 0.00 0.00 0.00 4.00
2000 2040 1.661341 GATGACATGTGAGACCTGGC 58.339 55.000 1.15 0.00 0.00 4.85
2303 2365 8.367660 ACAAATTAATCTAGGACTGAGACTGA 57.632 34.615 0.00 0.00 0.00 3.41
2304 2366 7.708752 GGACAAATTAATCTAGGACTGAGACTG 59.291 40.741 0.00 0.00 0.00 3.51
2305 2367 7.400339 TGGACAAATTAATCTAGGACTGAGACT 59.600 37.037 0.00 0.00 0.00 3.24
2306 2368 7.492994 GTGGACAAATTAATCTAGGACTGAGAC 59.507 40.741 0.00 0.00 0.00 3.36
2307 2369 7.364762 GGTGGACAAATTAATCTAGGACTGAGA 60.365 40.741 0.00 0.00 0.00 3.27
2308 2370 6.763610 GGTGGACAAATTAATCTAGGACTGAG 59.236 42.308 0.00 0.00 0.00 3.35
2337 2399 3.494254 AACCGGTCTGGCACCCAA 61.494 61.111 8.04 0.00 43.31 4.12
2338 2400 4.263572 CAACCGGTCTGGCACCCA 62.264 66.667 8.04 0.00 43.31 4.51
2340 2402 4.643387 AGCAACCGGTCTGGCACC 62.643 66.667 22.76 6.39 43.94 5.01
2341 2403 3.357079 CAGCAACCGGTCTGGCAC 61.357 66.667 22.76 4.84 43.94 5.01
2346 2408 2.128771 AAATATGCAGCAACCGGTCT 57.871 45.000 8.04 0.00 0.00 3.85
2426 2532 5.391312 AAAAATGCCAAGGTGACATCTAC 57.609 39.130 0.00 0.00 0.00 2.59
2427 2533 4.462483 GGAAAAATGCCAAGGTGACATCTA 59.538 41.667 0.00 0.00 0.00 1.98
2454 2560 1.813786 ACACTAGAAGGACTCGTCTGC 59.186 52.381 0.00 0.00 33.85 4.26
2593 2699 3.716006 CCAGCGACCAACTGCACG 61.716 66.667 0.00 0.00 33.65 5.34
2632 2738 5.064325 GTCTTTGTCGACACCTTAAAACTGT 59.936 40.000 19.90 0.00 34.11 3.55
2933 4284 8.194769 CGCCAATAATTAACCTCCAGTTTTTAT 58.805 33.333 0.00 0.00 40.05 1.40
2940 4291 4.821805 ACATCGCCAATAATTAACCTCCAG 59.178 41.667 0.00 0.00 0.00 3.86
2995 4346 8.993424 AGACAATCCATAAGTATTTAGTCCTGT 58.007 33.333 0.00 0.00 0.00 4.00
3016 4367 1.682323 TGCATGCAAAAGCAGAGACAA 59.318 42.857 20.30 0.00 35.51 3.18
3121 4472 2.472886 CGTGAAGTGAAGCAGCAATACG 60.473 50.000 0.00 0.00 0.00 3.06
3229 4580 1.002502 ATCAAGAGCAGCAGCAGCA 60.003 52.632 12.92 0.00 45.49 4.41
3230 4581 1.722677 GATCAAGAGCAGCAGCAGC 59.277 57.895 3.17 0.46 45.49 5.25
3231 4582 1.429927 CCGATCAAGAGCAGCAGCAG 61.430 60.000 3.17 0.00 45.49 4.24
3517 4882 3.484407 AGGTAGGCAGGTACGTACATAG 58.516 50.000 26.02 15.71 33.58 2.23
3527 4892 0.395448 GGAGACGTAGGTAGGCAGGT 60.395 60.000 0.00 0.00 0.00 4.00
3554 4919 5.983720 CACATATACTGCCAGTTAGTACACC 59.016 44.000 1.02 0.00 33.80 4.16
3866 5243 3.990959 AAGGCCAAGTGAAAACCAAAA 57.009 38.095 5.01 0.00 0.00 2.44
3890 5271 3.286353 CCAAAAATTGCCTGGTTGGTTT 58.714 40.909 0.00 0.00 38.35 3.27
3909 5290 4.714308 AGGAAACATGAGAACCAAAAACCA 59.286 37.500 0.00 0.00 0.00 3.67
3923 5304 7.228706 AGGCGATAAGGTTTATAAGGAAACATG 59.771 37.037 0.00 0.00 40.43 3.21
3940 5321 7.831753 TCCATTAGAAGAATAGAGGCGATAAG 58.168 38.462 0.00 0.00 0.00 1.73
3942 5323 7.451877 AGTTCCATTAGAAGAATAGAGGCGATA 59.548 37.037 0.00 0.00 34.29 2.92
4012 5394 6.430451 CGTCTTGCAAAGTTTTGAGTAATCT 58.570 36.000 8.70 0.00 46.34 2.40
4115 5497 2.875296 TGACAGGGAGTGAAATTTGGG 58.125 47.619 0.00 0.00 0.00 4.12
4131 5514 5.576563 TTGGAGGGAACTAGAAATTGACA 57.423 39.130 0.00 0.00 44.43 3.58
4178 5561 0.179105 ACAAACACCGTGTAGACGCA 60.179 50.000 6.94 0.00 44.68 5.24
4179 5562 0.505655 GACAAACACCGTGTAGACGC 59.494 55.000 6.94 0.00 44.68 5.19
4181 5564 3.558418 ACATTGACAAACACCGTGTAGAC 59.442 43.478 4.17 2.47 0.00 2.59
4182 5565 3.799366 ACATTGACAAACACCGTGTAGA 58.201 40.909 4.17 0.00 0.00 2.59
4183 5566 4.545823 AACATTGACAAACACCGTGTAG 57.454 40.909 4.17 3.61 0.00 2.74
4184 5567 5.358090 TCTAACATTGACAAACACCGTGTA 58.642 37.500 4.17 0.00 0.00 2.90
4187 5570 6.385649 AAATCTAACATTGACAAACACCGT 57.614 33.333 0.00 0.00 0.00 4.83
4188 5571 9.702726 CTATAAATCTAACATTGACAAACACCG 57.297 33.333 0.00 0.00 0.00 4.94
4238 5750 9.783256 GACAAACACTTTTACACACTTAAGAAT 57.217 29.630 10.09 0.00 0.00 2.40
4242 5754 9.347934 CATTGACAAACACTTTTACACACTTAA 57.652 29.630 0.00 0.00 0.00 1.85
4252 5764 6.704512 GTCACAACATTGACAAACACTTTT 57.295 33.333 0.00 0.00 44.62 2.27
4292 5804 1.066716 GTTGGGTGCGTGTAGATACCA 60.067 52.381 0.00 0.00 34.89 3.25
4303 5815 4.351938 TCCTCGACGTTGGGTGCG 62.352 66.667 1.05 0.00 0.00 5.34
4316 5828 0.250338 AAAAGCCTCACCGTGTCCTC 60.250 55.000 0.00 0.00 0.00 3.71
4326 5838 5.827797 ACTTCACTGAATGTTAAAAGCCTCA 59.172 36.000 0.00 0.00 0.00 3.86
4369 5881 3.435186 GCCTCAACGCTCCCAAGC 61.435 66.667 0.00 0.00 45.56 4.01
4370 5882 0.890996 AAAGCCTCAACGCTCCCAAG 60.891 55.000 0.00 0.00 38.44 3.61
4371 5883 0.467290 AAAAGCCTCAACGCTCCCAA 60.467 50.000 0.00 0.00 38.44 4.12
4372 5884 0.398696 TAAAAGCCTCAACGCTCCCA 59.601 50.000 0.00 0.00 38.44 4.37
4373 5885 1.199327 GTTAAAAGCCTCAACGCTCCC 59.801 52.381 0.00 0.00 38.44 4.30
4374 5886 1.877443 TGTTAAAAGCCTCAACGCTCC 59.123 47.619 0.00 0.00 38.44 4.70
4375 5887 3.831715 ATGTTAAAAGCCTCAACGCTC 57.168 42.857 0.00 0.00 38.44 5.03
4376 5888 3.568007 TGAATGTTAAAAGCCTCAACGCT 59.432 39.130 0.00 0.00 42.22 5.07
4377 5889 3.896122 TGAATGTTAAAAGCCTCAACGC 58.104 40.909 0.00 0.00 0.00 4.84
4378 5890 4.911610 CACTGAATGTTAAAAGCCTCAACG 59.088 41.667 0.00 0.00 0.00 4.10
4379 5891 6.072112 TCACTGAATGTTAAAAGCCTCAAC 57.928 37.500 0.00 0.00 0.00 3.18
4380 5892 6.321181 ACTTCACTGAATGTTAAAAGCCTCAA 59.679 34.615 0.00 0.00 0.00 3.02
4381 5893 5.827797 ACTTCACTGAATGTTAAAAGCCTCA 59.172 36.000 0.00 0.00 0.00 3.86
4382 5894 6.319141 ACTTCACTGAATGTTAAAAGCCTC 57.681 37.500 0.00 0.00 0.00 4.70
4383 5895 7.719633 TCTTACTTCACTGAATGTTAAAAGCCT 59.280 33.333 0.00 0.00 0.00 4.58
4384 5896 7.871853 TCTTACTTCACTGAATGTTAAAAGCC 58.128 34.615 0.00 0.00 0.00 4.35
4385 5897 9.387123 CTTCTTACTTCACTGAATGTTAAAAGC 57.613 33.333 0.00 0.00 0.00 3.51
4386 5898 9.387123 GCTTCTTACTTCACTGAATGTTAAAAG 57.613 33.333 0.00 0.00 0.00 2.27
4387 5899 9.120538 AGCTTCTTACTTCACTGAATGTTAAAA 57.879 29.630 0.00 0.00 0.00 1.52
4388 5900 8.677148 AGCTTCTTACTTCACTGAATGTTAAA 57.323 30.769 0.00 0.00 0.00 1.52
4389 5901 9.424319 CTAGCTTCTTACTTCACTGAATGTTAA 57.576 33.333 0.00 0.00 0.00 2.01
4390 5902 7.545965 GCTAGCTTCTTACTTCACTGAATGTTA 59.454 37.037 7.70 0.00 0.00 2.41
4391 5903 6.370166 GCTAGCTTCTTACTTCACTGAATGTT 59.630 38.462 7.70 0.00 0.00 2.71
4392 5904 5.872070 GCTAGCTTCTTACTTCACTGAATGT 59.128 40.000 7.70 0.00 0.00 2.71
4393 5905 5.871524 TGCTAGCTTCTTACTTCACTGAATG 59.128 40.000 17.23 0.00 0.00 2.67
4394 5906 6.042638 TGCTAGCTTCTTACTTCACTGAAT 57.957 37.500 17.23 0.00 0.00 2.57
4395 5907 5.468540 TGCTAGCTTCTTACTTCACTGAA 57.531 39.130 17.23 0.00 0.00 3.02
4396 5908 5.667539 ATGCTAGCTTCTTACTTCACTGA 57.332 39.130 17.23 0.00 0.00 3.41
4397 5909 5.982516 CCTATGCTAGCTTCTTACTTCACTG 59.017 44.000 17.23 0.00 0.00 3.66
4398 5910 5.894393 TCCTATGCTAGCTTCTTACTTCACT 59.106 40.000 17.23 0.00 0.00 3.41
4399 5911 6.150396 TCCTATGCTAGCTTCTTACTTCAC 57.850 41.667 17.23 0.00 0.00 3.18
4400 5912 6.753180 CATCCTATGCTAGCTTCTTACTTCA 58.247 40.000 17.23 0.00 0.00 3.02
4430 5942 2.263077 CAGTCCATACAGTCAACGCTC 58.737 52.381 0.00 0.00 0.00 5.03
4496 6008 2.309528 TAGTTGGATCATGGTGACGC 57.690 50.000 0.00 0.00 0.00 5.19
4530 6042 9.095989 AGAGTCCACAAATTCTCGAAGGTAACT 62.096 40.741 0.00 0.00 39.33 2.24
4531 6043 4.995487 AGTCCACAAATTCTCGAAGGTAAC 59.005 41.667 0.00 0.00 0.00 2.50
4533 6045 4.527038 AGAGTCCACAAATTCTCGAAGGTA 59.473 41.667 0.00 0.00 32.90 3.08
4534 6046 3.325135 AGAGTCCACAAATTCTCGAAGGT 59.675 43.478 0.00 0.00 32.90 3.50
4543 6055 4.586001 AGCAATGTCAAGAGTCCACAAATT 59.414 37.500 0.00 0.00 0.00 1.82
4555 6067 4.092383 GCAAGGCAAAATAGCAATGTCAAG 59.908 41.667 0.00 0.00 35.83 3.02
4576 6088 5.509832 AATATCATTATGAGAGCCAGGCA 57.490 39.130 15.80 0.00 0.00 4.75
4579 6091 8.530311 AGACACTAATATCATTATGAGAGCCAG 58.470 37.037 0.29 0.00 0.00 4.85
4582 6094 8.655092 GCAAGACACTAATATCATTATGAGAGC 58.345 37.037 0.29 0.00 0.00 4.09
4631 6143 0.254178 AGGCATCACCACTTGCTAGG 59.746 55.000 0.00 0.00 43.14 3.02
4649 6161 1.203052 ACCTTGAAATTGCATGCCGAG 59.797 47.619 16.68 8.15 0.00 4.63
4653 6165 3.391965 TGTTCACCTTGAAATTGCATGC 58.608 40.909 11.82 11.82 38.22 4.06
4657 6169 5.523188 TCATGTTTGTTCACCTTGAAATTGC 59.477 36.000 0.00 0.00 38.22 3.56
4689 6201 5.473931 ACATCGGCTTAGATAGTAGCATTG 58.526 41.667 0.00 0.00 39.15 2.82
4703 6215 1.496060 TGGGTAGATGACATCGGCTT 58.504 50.000 9.77 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.