Multiple sequence alignment - TraesCS2B01G250800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G250800 chr2B 100.000 6300 0 0 687 6986 260759290 260752991 0.000000e+00 11635.0
1 TraesCS2B01G250800 chr2B 100.000 411 0 0 7220 7630 260752757 260752347 0.000000e+00 760.0
2 TraesCS2B01G250800 chr2B 100.000 394 0 0 1 394 260759976 260759583 0.000000e+00 728.0
3 TraesCS2B01G250800 chr2A 95.177 2903 93 18 3320 6192 275932281 275929396 0.000000e+00 4542.0
4 TraesCS2B01G250800 chr2A 95.334 1436 51 4 1889 3320 275933873 275932450 0.000000e+00 2266.0
5 TraesCS2B01G250800 chr2A 92.784 1164 32 17 687 1830 275935087 275933956 0.000000e+00 1637.0
6 TraesCS2B01G250800 chr2A 95.522 737 23 6 6190 6921 275929235 275928504 0.000000e+00 1170.0
7 TraesCS2B01G250800 chr2A 91.129 124 10 1 1764 1887 628670178 628670056 4.740000e-37 167.0
8 TraesCS2B01G250800 chr2A 78.095 315 30 18 7349 7625 275928073 275927760 6.130000e-36 163.0
9 TraesCS2B01G250800 chr2D 94.114 2973 86 17 687 3583 206680013 206682972 0.000000e+00 4438.0
10 TraesCS2B01G250800 chr2D 96.014 2057 51 8 3580 5615 206683053 206685099 0.000000e+00 3315.0
11 TraesCS2B01G250800 chr2D 98.095 630 11 1 6175 6804 206685648 206686276 0.000000e+00 1096.0
12 TraesCS2B01G250800 chr2D 97.380 458 9 2 5721 6177 206685100 206685555 0.000000e+00 776.0
13 TraesCS2B01G250800 chr2D 79.177 389 59 17 7220 7597 620299424 620299047 4.570000e-62 250.0
14 TraesCS2B01G250800 chr2D 82.581 310 24 13 25 310 206640147 206640450 5.910000e-61 246.0
15 TraesCS2B01G250800 chr2D 80.236 339 47 16 7273 7599 446861194 446860864 3.560000e-58 237.0
16 TraesCS2B01G250800 chr1D 80.879 387 48 21 7220 7596 378734423 378734793 1.620000e-71 281.0
17 TraesCS2B01G250800 chr1D 84.211 285 33 7 7220 7498 412284143 412283865 4.540000e-67 267.0
18 TraesCS2B01G250800 chr6A 83.548 310 39 9 7220 7525 393635344 393635043 5.830000e-71 279.0
19 TraesCS2B01G250800 chr6A 79.845 387 51 20 7220 7596 393635302 393634933 2.730000e-64 257.0
20 TraesCS2B01G250800 chr6A 82.353 306 38 12 7222 7525 263481 263772 1.270000e-62 252.0
21 TraesCS2B01G250800 chr6A 92.969 128 9 0 1760 1887 235489264 235489137 3.640000e-43 187.0
22 TraesCS2B01G250800 chr6A 92.188 128 10 0 1760 1887 243958432 243958305 1.690000e-41 182.0
23 TraesCS2B01G250800 chr6A 84.000 175 14 6 6806 6980 393635545 393635385 1.030000e-33 156.0
24 TraesCS2B01G250800 chr6A 90.541 74 6 1 3301 3373 607173972 607173899 6.300000e-16 97.1
25 TraesCS2B01G250800 chr6A 90.541 74 6 1 3301 3373 607313395 607313322 6.300000e-16 97.1
26 TraesCS2B01G250800 chr6D 84.946 279 26 11 7233 7503 392784538 392784808 1.260000e-67 268.0
27 TraesCS2B01G250800 chr5A 82.109 313 41 12 7220 7525 17821365 17821061 3.530000e-63 254.0
28 TraesCS2B01G250800 chr5D 93.701 127 7 1 1761 1887 265961978 265961853 1.010000e-43 189.0
29 TraesCS2B01G250800 chr5D 91.429 70 5 1 3297 3365 435262626 435262695 2.270000e-15 95.3
30 TraesCS2B01G250800 chr7A 92.063 126 8 2 1762 1887 422830965 422830842 7.870000e-40 176.0
31 TraesCS2B01G250800 chr5B 90.370 135 12 1 1753 1887 675874913 675875046 7.870000e-40 176.0
32 TraesCS2B01G250800 chr6B 91.339 127 11 0 1761 1887 613586922 613587048 2.830000e-39 174.0
33 TraesCS2B01G250800 chr4B 93.846 65 2 1 3301 3365 661199893 661199831 6.300000e-16 97.1
34 TraesCS2B01G250800 chr7D 90.278 72 7 0 3297 3368 25043129 25043200 2.270000e-15 95.3
35 TraesCS2B01G250800 chr7B 93.750 64 2 1 3305 3368 328137108 328137047 2.270000e-15 95.3
36 TraesCS2B01G250800 chr4D 91.429 70 2 3 3301 3369 444255083 444255149 8.150000e-15 93.5
37 TraesCS2B01G250800 chr3B 85.227 88 6 5 7220 7303 4498093 4498009 4.910000e-12 84.2
38 TraesCS2B01G250800 chr3D 100.000 28 0 0 29 56 593961100 593961127 1.400000e-02 52.8
39 TraesCS2B01G250800 chr3A 100.000 28 0 0 29 56 724793973 724794000 1.400000e-02 52.8
40 TraesCS2B01G250800 chr3A 100.000 28 0 0 29 56 745203596 745203569 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G250800 chr2B 260752347 260759976 7629 True 4374.333333 11635 100.000000 1 7630 3 chr2B.!!$R1 7629
1 TraesCS2B01G250800 chr2A 275927760 275935087 7327 True 1955.600000 4542 91.382400 687 7625 5 chr2A.!!$R2 6938
2 TraesCS2B01G250800 chr2D 206680013 206686276 6263 False 2406.250000 4438 96.400750 687 6804 4 chr2D.!!$F2 6117
3 TraesCS2B01G250800 chr6A 393634933 393635545 612 True 230.666667 279 82.464333 6806 7596 3 chr6A.!!$R5 790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 333 0.106708 TTTTGTGGAGACGCTGAGCT 59.893 50.000 1.78 0.00 42.82 4.09 F
345 346 0.320508 CTGAGCTGCTTCAGAGTGCA 60.321 55.000 18.28 3.86 45.95 4.57 F
2065 2143 0.323360 TGTGGGGCTGTAGGCAAATC 60.323 55.000 7.77 0.00 44.01 2.17 F
3171 3256 0.249911 GTGCGGACCTCACAGACTTT 60.250 55.000 9.79 0.00 34.73 2.66 F
3172 3257 0.468226 TGCGGACCTCACAGACTTTT 59.532 50.000 0.00 0.00 0.00 2.27 F
3173 3258 1.134220 TGCGGACCTCACAGACTTTTT 60.134 47.619 0.00 0.00 0.00 1.94 F
4386 4735 1.537135 GGAGAGCATGAGAAGTACCGC 60.537 57.143 0.00 0.00 0.00 5.68 F
4547 4896 2.955660 CCTTGGTGGCTGTTTGACTTAA 59.044 45.455 0.00 0.00 0.00 1.85 F
5923 6291 2.200337 AAGAAAACCGCTGCACCCC 61.200 57.895 0.00 0.00 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2175 2253 0.672401 ACCAAGTTGTATGACGCGGG 60.672 55.000 12.47 0.0 0.00 6.13 R
2180 2258 3.740115 AGACACCACCAAGTTGTATGAC 58.260 45.455 1.45 0.0 0.00 3.06 R
3374 3629 0.383860 GCACGCCGTAAACTTGACAC 60.384 55.000 0.00 0.0 0.00 3.67 R
4763 5113 1.007238 AGACACCTTAGCAGCTCCCTA 59.993 52.381 0.00 0.0 0.00 3.53 R
4984 5335 1.014564 GTAACAGGAGACACCAGCGC 61.015 60.000 0.00 0.0 42.04 5.92 R
5119 5470 3.182887 TGGGCAATGGGTATGTCTTTT 57.817 42.857 0.00 0.0 0.00 2.27 R
5833 6201 1.007849 GAAAAGAAGCGGGCGCAAA 60.008 52.632 10.83 0.0 44.88 3.68 R
6143 6512 2.683968 GAATGCAACAGTACGGAGTGA 58.316 47.619 10.14 0.0 45.73 3.41 R
6820 7452 0.315251 CTCCTGTCTCGCTGAACACA 59.685 55.000 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.222847 GGGCGCCGGTTCTCCTAG 62.223 72.222 22.54 0.00 0.00 3.02
25 26 3.145551 GGCGCCGGTTCTCCTAGA 61.146 66.667 12.58 0.00 0.00 2.43
26 27 2.413765 GCGCCGGTTCTCCTAGAG 59.586 66.667 1.90 0.00 0.00 2.43
27 28 3.121019 CGCCGGTTCTCCTAGAGG 58.879 66.667 1.90 0.00 0.00 3.69
28 29 1.753463 CGCCGGTTCTCCTAGAGGT 60.753 63.158 1.90 0.00 36.34 3.85
29 30 1.726533 CGCCGGTTCTCCTAGAGGTC 61.727 65.000 1.90 0.00 36.34 3.85
30 31 0.683504 GCCGGTTCTCCTAGAGGTCA 60.684 60.000 1.90 0.00 36.34 4.02
31 32 2.030045 GCCGGTTCTCCTAGAGGTCAT 61.030 57.143 1.90 0.00 36.34 3.06
32 33 2.389715 CCGGTTCTCCTAGAGGTCATT 58.610 52.381 0.00 0.00 36.34 2.57
33 34 2.362717 CCGGTTCTCCTAGAGGTCATTC 59.637 54.545 0.00 0.00 36.34 2.67
34 35 3.024547 CGGTTCTCCTAGAGGTCATTCA 58.975 50.000 0.00 0.00 36.34 2.57
35 36 3.447586 CGGTTCTCCTAGAGGTCATTCAA 59.552 47.826 0.00 0.00 36.34 2.69
36 37 4.100189 CGGTTCTCCTAGAGGTCATTCAAT 59.900 45.833 0.00 0.00 36.34 2.57
37 38 5.395768 CGGTTCTCCTAGAGGTCATTCAATT 60.396 44.000 0.00 0.00 36.34 2.32
38 39 5.819901 GGTTCTCCTAGAGGTCATTCAATTG 59.180 44.000 0.00 0.00 36.34 2.32
39 40 6.410540 GTTCTCCTAGAGGTCATTCAATTGT 58.589 40.000 5.13 0.00 36.34 2.71
40 41 7.364762 GGTTCTCCTAGAGGTCATTCAATTGTA 60.365 40.741 5.13 0.00 36.34 2.41
41 42 7.353414 TCTCCTAGAGGTCATTCAATTGTAG 57.647 40.000 5.13 0.00 36.34 2.74
42 43 6.897966 TCTCCTAGAGGTCATTCAATTGTAGT 59.102 38.462 5.13 0.00 36.34 2.73
43 44 7.068839 TCTCCTAGAGGTCATTCAATTGTAGTC 59.931 40.741 5.13 0.00 36.34 2.59
44 45 6.667848 TCCTAGAGGTCATTCAATTGTAGTCA 59.332 38.462 5.13 0.00 36.34 3.41
45 46 7.345653 TCCTAGAGGTCATTCAATTGTAGTCAT 59.654 37.037 5.13 0.00 36.34 3.06
46 47 7.655328 CCTAGAGGTCATTCAATTGTAGTCATC 59.345 40.741 5.13 2.60 0.00 2.92
47 48 6.950842 AGAGGTCATTCAATTGTAGTCATCA 58.049 36.000 5.13 0.00 0.00 3.07
48 49 7.397221 AGAGGTCATTCAATTGTAGTCATCAA 58.603 34.615 5.13 0.00 0.00 2.57
49 50 7.884877 AGAGGTCATTCAATTGTAGTCATCAAA 59.115 33.333 5.13 0.00 0.00 2.69
50 51 8.585471 AGGTCATTCAATTGTAGTCATCAAAT 57.415 30.769 5.13 0.00 0.00 2.32
51 52 8.680903 AGGTCATTCAATTGTAGTCATCAAATC 58.319 33.333 5.13 0.00 0.00 2.17
52 53 8.680903 GGTCATTCAATTGTAGTCATCAAATCT 58.319 33.333 5.13 0.00 0.00 2.40
53 54 9.499585 GTCATTCAATTGTAGTCATCAAATCTG 57.500 33.333 5.13 0.00 0.00 2.90
54 55 8.680001 TCATTCAATTGTAGTCATCAAATCTGG 58.320 33.333 5.13 0.00 0.00 3.86
55 56 8.680001 CATTCAATTGTAGTCATCAAATCTGGA 58.320 33.333 5.13 0.00 0.00 3.86
56 57 7.615582 TCAATTGTAGTCATCAAATCTGGAC 57.384 36.000 5.13 0.00 0.00 4.02
57 58 7.167535 TCAATTGTAGTCATCAAATCTGGACA 58.832 34.615 5.13 0.00 32.79 4.02
58 59 7.335171 TCAATTGTAGTCATCAAATCTGGACAG 59.665 37.037 5.13 0.00 32.79 3.51
59 60 5.745312 TGTAGTCATCAAATCTGGACAGT 57.255 39.130 0.00 0.00 32.79 3.55
60 61 5.482006 TGTAGTCATCAAATCTGGACAGTG 58.518 41.667 0.00 0.00 32.79 3.66
61 62 3.947868 AGTCATCAAATCTGGACAGTGG 58.052 45.455 0.00 0.00 32.79 4.00
62 63 3.584406 AGTCATCAAATCTGGACAGTGGA 59.416 43.478 0.00 0.00 32.79 4.02
63 64 3.686726 GTCATCAAATCTGGACAGTGGAC 59.313 47.826 0.00 0.00 0.00 4.02
64 65 2.859165 TCAAATCTGGACAGTGGACC 57.141 50.000 0.00 0.00 0.00 4.46
65 66 2.054021 TCAAATCTGGACAGTGGACCA 58.946 47.619 10.18 10.18 37.31 4.02
66 67 2.441375 TCAAATCTGGACAGTGGACCAA 59.559 45.455 11.42 5.01 38.37 3.67
67 68 2.816087 CAAATCTGGACAGTGGACCAAG 59.184 50.000 11.42 0.00 38.37 3.61
68 69 0.326264 ATCTGGACAGTGGACCAAGC 59.674 55.000 11.42 0.00 38.37 4.01
69 70 1.669115 CTGGACAGTGGACCAAGCG 60.669 63.158 11.42 0.00 38.37 4.68
70 71 2.099652 CTGGACAGTGGACCAAGCGA 62.100 60.000 11.42 0.00 38.37 4.93
71 72 1.070786 GGACAGTGGACCAAGCGAA 59.929 57.895 0.00 0.00 0.00 4.70
72 73 1.228657 GGACAGTGGACCAAGCGAAC 61.229 60.000 0.00 0.00 0.00 3.95
73 74 0.249911 GACAGTGGACCAAGCGAACT 60.250 55.000 0.00 0.00 0.00 3.01
74 75 0.180406 ACAGTGGACCAAGCGAACTT 59.820 50.000 0.00 0.00 36.19 2.66
75 76 1.414919 ACAGTGGACCAAGCGAACTTA 59.585 47.619 0.00 0.00 33.74 2.24
76 77 1.798813 CAGTGGACCAAGCGAACTTAC 59.201 52.381 0.00 0.00 33.74 2.34
77 78 1.154197 GTGGACCAAGCGAACTTACC 58.846 55.000 0.00 0.00 33.74 2.85
78 79 1.053424 TGGACCAAGCGAACTTACCT 58.947 50.000 0.00 0.00 33.74 3.08
79 80 2.028748 GTGGACCAAGCGAACTTACCTA 60.029 50.000 0.00 0.00 33.74 3.08
80 81 2.028748 TGGACCAAGCGAACTTACCTAC 60.029 50.000 0.00 0.00 33.74 3.18
81 82 2.028748 GGACCAAGCGAACTTACCTACA 60.029 50.000 0.00 0.00 33.74 2.74
82 83 3.555586 GGACCAAGCGAACTTACCTACAA 60.556 47.826 0.00 0.00 33.74 2.41
83 84 4.060205 GACCAAGCGAACTTACCTACAAA 58.940 43.478 0.00 0.00 33.74 2.83
84 85 4.062991 ACCAAGCGAACTTACCTACAAAG 58.937 43.478 0.00 0.00 33.74 2.77
85 86 3.435671 CCAAGCGAACTTACCTACAAAGG 59.564 47.826 0.00 0.00 40.84 3.11
86 87 4.312443 CAAGCGAACTTACCTACAAAGGA 58.688 43.478 0.00 0.00 39.23 3.36
87 88 4.753107 CAAGCGAACTTACCTACAAAGGAA 59.247 41.667 0.00 0.00 39.23 3.36
88 89 5.237779 CAAGCGAACTTACCTACAAAGGAAA 59.762 40.000 0.00 0.00 39.23 3.13
89 90 5.824097 AAGCGAACTTACCTACAAAGGAAAA 59.176 36.000 0.00 0.00 46.70 2.29
90 91 6.319405 AAGCGAACTTACCTACAAAGGAAAAA 59.681 34.615 0.00 0.00 46.70 1.94
121 122 3.081554 ACATGGACTGTGGGGAGC 58.918 61.111 0.00 0.00 36.48 4.70
122 123 1.539869 ACATGGACTGTGGGGAGCT 60.540 57.895 0.00 0.00 36.48 4.09
123 124 1.222936 CATGGACTGTGGGGAGCTC 59.777 63.158 4.71 4.71 0.00 4.09
124 125 1.081833 ATGGACTGTGGGGAGCTCT 59.918 57.895 14.64 0.00 0.00 4.09
125 126 1.270414 ATGGACTGTGGGGAGCTCTG 61.270 60.000 14.64 0.27 0.00 3.35
126 127 2.664081 GGACTGTGGGGAGCTCTGG 61.664 68.421 14.64 0.65 0.00 3.86
127 128 1.915769 GACTGTGGGGAGCTCTGGT 60.916 63.158 14.64 3.83 0.00 4.00
128 129 1.893919 GACTGTGGGGAGCTCTGGTC 61.894 65.000 14.64 9.08 0.00 4.02
140 141 4.688021 GAGCTCTGGTCCAACTAATAGTG 58.312 47.826 6.43 0.00 0.00 2.74
141 142 4.097418 AGCTCTGGTCCAACTAATAGTGT 58.903 43.478 0.00 0.00 0.00 3.55
142 143 4.081420 AGCTCTGGTCCAACTAATAGTGTG 60.081 45.833 0.00 0.00 0.00 3.82
143 144 4.184629 CTCTGGTCCAACTAATAGTGTGC 58.815 47.826 0.00 0.00 0.00 4.57
144 145 3.055385 TCTGGTCCAACTAATAGTGTGCC 60.055 47.826 0.00 0.00 0.00 5.01
145 146 2.640332 TGGTCCAACTAATAGTGTGCCA 59.360 45.455 0.00 0.00 0.00 4.92
146 147 3.270877 GGTCCAACTAATAGTGTGCCAG 58.729 50.000 0.00 0.00 0.00 4.85
147 148 3.270877 GTCCAACTAATAGTGTGCCAGG 58.729 50.000 0.00 0.00 0.00 4.45
148 149 2.017049 CCAACTAATAGTGTGCCAGGC 58.983 52.381 3.66 3.66 0.00 4.85
149 150 1.665679 CAACTAATAGTGTGCCAGGCG 59.334 52.381 7.03 0.00 0.00 5.52
150 151 0.178068 ACTAATAGTGTGCCAGGCGG 59.822 55.000 7.03 0.00 0.00 6.13
151 152 0.464036 CTAATAGTGTGCCAGGCGGA 59.536 55.000 7.03 0.00 0.00 5.54
152 153 0.177141 TAATAGTGTGCCAGGCGGAC 59.823 55.000 7.03 5.69 0.00 4.79
153 154 2.536997 AATAGTGTGCCAGGCGGACC 62.537 60.000 7.03 0.00 0.00 4.46
166 167 3.936535 GGACCTCCGGACTACCAG 58.063 66.667 0.00 0.00 35.59 4.00
167 168 2.424733 GGACCTCCGGACTACCAGC 61.425 68.421 0.00 0.00 35.59 4.85
168 169 1.380112 GACCTCCGGACTACCAGCT 60.380 63.158 0.00 0.00 35.59 4.24
169 170 0.971447 GACCTCCGGACTACCAGCTT 60.971 60.000 0.00 0.00 35.59 3.74
170 171 0.333993 ACCTCCGGACTACCAGCTTA 59.666 55.000 0.00 0.00 35.59 3.09
171 172 1.272872 ACCTCCGGACTACCAGCTTAA 60.273 52.381 0.00 0.00 35.59 1.85
172 173 1.409427 CCTCCGGACTACCAGCTTAAG 59.591 57.143 0.00 0.00 35.59 1.85
173 174 2.376109 CTCCGGACTACCAGCTTAAGA 58.624 52.381 6.67 0.00 35.59 2.10
174 175 2.758979 CTCCGGACTACCAGCTTAAGAA 59.241 50.000 6.67 0.00 35.59 2.52
175 176 2.494870 TCCGGACTACCAGCTTAAGAAC 59.505 50.000 6.67 0.00 35.59 3.01
176 177 2.527100 CGGACTACCAGCTTAAGAACG 58.473 52.381 6.67 0.00 35.59 3.95
177 178 2.163010 CGGACTACCAGCTTAAGAACGA 59.837 50.000 6.67 0.00 35.59 3.85
178 179 3.181489 CGGACTACCAGCTTAAGAACGAT 60.181 47.826 6.67 0.00 35.59 3.73
179 180 4.677250 CGGACTACCAGCTTAAGAACGATT 60.677 45.833 6.67 0.00 35.59 3.34
180 181 5.176592 GGACTACCAGCTTAAGAACGATTT 58.823 41.667 6.67 0.00 35.97 2.17
181 182 5.063564 GGACTACCAGCTTAAGAACGATTTG 59.936 44.000 6.67 0.00 35.97 2.32
182 183 5.790593 ACTACCAGCTTAAGAACGATTTGA 58.209 37.500 6.67 0.00 0.00 2.69
183 184 5.869888 ACTACCAGCTTAAGAACGATTTGAG 59.130 40.000 6.67 0.00 0.00 3.02
184 185 4.003648 ACCAGCTTAAGAACGATTTGAGG 58.996 43.478 6.67 0.00 0.00 3.86
185 186 4.253685 CCAGCTTAAGAACGATTTGAGGA 58.746 43.478 6.67 0.00 0.00 3.71
186 187 4.695455 CCAGCTTAAGAACGATTTGAGGAA 59.305 41.667 6.67 0.00 0.00 3.36
187 188 5.181245 CCAGCTTAAGAACGATTTGAGGAAA 59.819 40.000 6.67 0.00 0.00 3.13
188 189 6.127897 CCAGCTTAAGAACGATTTGAGGAAAT 60.128 38.462 6.67 0.00 34.29 2.17
189 190 7.308435 CAGCTTAAGAACGATTTGAGGAAATT 58.692 34.615 6.67 0.00 31.58 1.82
190 191 7.809806 CAGCTTAAGAACGATTTGAGGAAATTT 59.190 33.333 6.67 0.00 31.58 1.82
191 192 7.809806 AGCTTAAGAACGATTTGAGGAAATTTG 59.190 33.333 6.67 0.00 31.58 2.32
192 193 7.807907 GCTTAAGAACGATTTGAGGAAATTTGA 59.192 33.333 6.67 0.00 31.58 2.69
193 194 9.677567 CTTAAGAACGATTTGAGGAAATTTGAA 57.322 29.630 0.00 0.00 31.58 2.69
196 197 9.546428 AAGAACGATTTGAGGAAATTTGAATTT 57.454 25.926 0.00 1.54 41.06 1.82
220 221 9.613428 TTTCTAGACTAATCCATGTACATTTGG 57.387 33.333 5.37 7.44 0.00 3.28
221 222 8.319057 TCTAGACTAATCCATGTACATTTGGT 57.681 34.615 13.88 10.54 34.48 3.67
222 223 9.429109 TCTAGACTAATCCATGTACATTTGGTA 57.571 33.333 13.88 3.54 34.48 3.25
231 232 3.615224 GTACATTTGGTACCCCTCGAA 57.385 47.619 10.07 0.00 45.43 3.71
232 233 2.781681 ACATTTGGTACCCCTCGAAG 57.218 50.000 10.07 0.00 0.00 3.79
233 234 2.262637 ACATTTGGTACCCCTCGAAGA 58.737 47.619 10.07 0.00 0.00 2.87
234 235 2.640826 ACATTTGGTACCCCTCGAAGAA 59.359 45.455 10.07 0.00 34.09 2.52
235 236 3.073356 ACATTTGGTACCCCTCGAAGAAA 59.927 43.478 10.07 0.56 34.09 2.52
236 237 3.860968 TTTGGTACCCCTCGAAGAAAA 57.139 42.857 10.07 0.00 34.09 2.29
237 238 3.860968 TTGGTACCCCTCGAAGAAAAA 57.139 42.857 10.07 0.00 34.09 1.94
259 260 7.733402 AAAAGAAATCCATGAACATTTGGTG 57.267 32.000 0.00 0.00 34.48 4.17
260 261 6.669125 AAGAAATCCATGAACATTTGGTGA 57.331 33.333 0.00 0.00 34.48 4.02
261 262 6.029346 AGAAATCCATGAACATTTGGTGAC 57.971 37.500 0.00 0.00 34.48 3.67
262 263 5.776716 AGAAATCCATGAACATTTGGTGACT 59.223 36.000 0.00 0.00 34.48 3.41
263 264 6.947733 AGAAATCCATGAACATTTGGTGACTA 59.052 34.615 0.00 0.00 34.48 2.59
264 265 6.764308 AATCCATGAACATTTGGTGACTAG 57.236 37.500 0.00 0.00 34.48 2.57
265 266 4.009675 TCCATGAACATTTGGTGACTAGC 58.990 43.478 0.00 0.00 34.48 3.42
266 267 3.758023 CCATGAACATTTGGTGACTAGCA 59.242 43.478 0.00 0.00 0.00 3.49
267 268 4.400251 CCATGAACATTTGGTGACTAGCAT 59.600 41.667 0.00 0.00 33.73 3.79
268 269 5.105635 CCATGAACATTTGGTGACTAGCATT 60.106 40.000 0.00 0.00 33.73 3.56
269 270 5.375417 TGAACATTTGGTGACTAGCATTG 57.625 39.130 0.00 0.00 33.73 2.82
270 271 4.218200 TGAACATTTGGTGACTAGCATTGG 59.782 41.667 0.00 0.00 33.73 3.16
271 272 4.032960 ACATTTGGTGACTAGCATTGGA 57.967 40.909 0.00 0.00 33.73 3.53
272 273 3.758554 ACATTTGGTGACTAGCATTGGAC 59.241 43.478 0.00 0.00 33.73 4.02
273 274 2.093306 TTGGTGACTAGCATTGGACG 57.907 50.000 0.00 0.00 33.73 4.79
274 275 1.262417 TGGTGACTAGCATTGGACGA 58.738 50.000 0.00 0.00 0.00 4.20
275 276 1.067142 TGGTGACTAGCATTGGACGAC 60.067 52.381 0.00 0.00 0.00 4.34
276 277 1.204941 GGTGACTAGCATTGGACGACT 59.795 52.381 0.00 0.00 0.00 4.18
277 278 2.426024 GGTGACTAGCATTGGACGACTA 59.574 50.000 0.00 0.00 0.00 2.59
278 279 3.119245 GGTGACTAGCATTGGACGACTAA 60.119 47.826 0.00 0.00 0.00 2.24
279 280 4.491676 GTGACTAGCATTGGACGACTAAA 58.508 43.478 0.00 0.00 0.00 1.85
280 281 4.927425 GTGACTAGCATTGGACGACTAAAA 59.073 41.667 0.00 0.00 0.00 1.52
281 282 5.062308 GTGACTAGCATTGGACGACTAAAAG 59.938 44.000 0.00 0.00 0.00 2.27
282 283 5.148651 ACTAGCATTGGACGACTAAAAGT 57.851 39.130 0.00 0.00 0.00 2.66
283 284 4.929808 ACTAGCATTGGACGACTAAAAGTG 59.070 41.667 0.00 0.00 0.00 3.16
284 285 3.740115 AGCATTGGACGACTAAAAGTGT 58.260 40.909 0.00 0.00 0.00 3.55
285 286 4.134563 AGCATTGGACGACTAAAAGTGTT 58.865 39.130 0.00 0.00 0.00 3.32
286 287 4.213482 AGCATTGGACGACTAAAAGTGTTC 59.787 41.667 0.00 0.00 0.00 3.18
287 288 4.024387 GCATTGGACGACTAAAAGTGTTCA 60.024 41.667 0.00 0.00 0.00 3.18
288 289 5.504994 GCATTGGACGACTAAAAGTGTTCAA 60.505 40.000 0.00 6.09 32.98 2.69
289 290 6.491394 CATTGGACGACTAAAAGTGTTCAAA 58.509 36.000 0.00 0.00 32.55 2.69
290 291 5.473796 TGGACGACTAAAAGTGTTCAAAC 57.526 39.130 0.00 0.00 0.00 2.93
291 292 4.333372 TGGACGACTAAAAGTGTTCAAACC 59.667 41.667 0.00 0.00 0.00 3.27
292 293 4.511734 GACGACTAAAAGTGTTCAAACCG 58.488 43.478 0.00 0.00 0.00 4.44
293 294 3.934579 ACGACTAAAAGTGTTCAAACCGT 59.065 39.130 0.00 0.00 0.00 4.83
294 295 4.392754 ACGACTAAAAGTGTTCAAACCGTT 59.607 37.500 0.00 0.00 0.00 4.44
295 296 5.106594 ACGACTAAAAGTGTTCAAACCGTTT 60.107 36.000 0.00 0.00 0.00 3.60
296 297 5.226360 CGACTAAAAGTGTTCAAACCGTTTG 59.774 40.000 16.53 16.53 41.96 2.93
307 308 5.766150 TCAAACCGTTTGATTCAGACATT 57.234 34.783 20.42 0.00 44.21 2.71
308 309 6.869315 TCAAACCGTTTGATTCAGACATTA 57.131 33.333 20.42 0.00 44.21 1.90
309 310 6.664515 TCAAACCGTTTGATTCAGACATTAC 58.335 36.000 20.42 0.00 44.21 1.89
310 311 6.261158 TCAAACCGTTTGATTCAGACATTACA 59.739 34.615 20.42 0.00 44.21 2.41
311 312 5.862924 ACCGTTTGATTCAGACATTACAG 57.137 39.130 7.95 0.00 0.00 2.74
312 313 5.547465 ACCGTTTGATTCAGACATTACAGA 58.453 37.500 7.95 0.00 0.00 3.41
313 314 6.173339 ACCGTTTGATTCAGACATTACAGAT 58.827 36.000 7.95 0.00 0.00 2.90
314 315 6.655003 ACCGTTTGATTCAGACATTACAGATT 59.345 34.615 7.95 0.00 0.00 2.40
315 316 7.174946 ACCGTTTGATTCAGACATTACAGATTT 59.825 33.333 7.95 0.00 0.00 2.17
316 317 8.023128 CCGTTTGATTCAGACATTACAGATTTT 58.977 33.333 7.95 0.00 0.00 1.82
317 318 8.843733 CGTTTGATTCAGACATTACAGATTTTG 58.156 33.333 7.95 0.00 0.00 2.44
318 319 9.683069 GTTTGATTCAGACATTACAGATTTTGT 57.317 29.630 2.62 0.00 43.96 2.83
319 320 9.681692 TTTGATTCAGACATTACAGATTTTGTG 57.318 29.630 0.00 0.00 41.10 3.33
320 321 7.819644 TGATTCAGACATTACAGATTTTGTGG 58.180 34.615 0.00 0.00 41.10 4.17
321 322 7.665145 TGATTCAGACATTACAGATTTTGTGGA 59.335 33.333 0.00 0.00 41.10 4.02
322 323 7.439157 TTCAGACATTACAGATTTTGTGGAG 57.561 36.000 0.00 0.00 41.10 3.86
323 324 6.768483 TCAGACATTACAGATTTTGTGGAGA 58.232 36.000 0.00 0.00 41.10 3.71
324 325 6.650807 TCAGACATTACAGATTTTGTGGAGAC 59.349 38.462 0.00 0.00 41.10 3.36
325 326 5.639506 AGACATTACAGATTTTGTGGAGACG 59.360 40.000 0.00 0.00 41.10 4.18
326 327 4.154195 ACATTACAGATTTTGTGGAGACGC 59.846 41.667 0.00 0.00 41.10 5.19
327 328 2.550830 ACAGATTTTGTGGAGACGCT 57.449 45.000 0.00 0.00 42.82 5.07
328 329 2.146342 ACAGATTTTGTGGAGACGCTG 58.854 47.619 0.00 0.00 42.82 5.18
329 330 2.224281 ACAGATTTTGTGGAGACGCTGA 60.224 45.455 0.00 0.00 42.82 4.26
330 331 2.414481 CAGATTTTGTGGAGACGCTGAG 59.586 50.000 0.00 0.00 42.82 3.35
331 332 1.129437 GATTTTGTGGAGACGCTGAGC 59.871 52.381 0.00 0.00 42.82 4.26
332 333 0.106708 TTTTGTGGAGACGCTGAGCT 59.893 50.000 1.78 0.00 42.82 4.09
333 334 0.601046 TTTGTGGAGACGCTGAGCTG 60.601 55.000 1.78 0.00 42.82 4.24
334 335 2.813042 GTGGAGACGCTGAGCTGC 60.813 66.667 1.78 0.00 38.02 5.25
335 336 2.993840 TGGAGACGCTGAGCTGCT 60.994 61.111 0.00 0.00 0.00 4.24
336 337 2.264166 GGAGACGCTGAGCTGCTT 59.736 61.111 2.53 0.00 0.00 3.91
337 338 1.809209 GGAGACGCTGAGCTGCTTC 60.809 63.158 2.53 0.00 0.00 3.86
338 339 1.080230 GAGACGCTGAGCTGCTTCA 60.080 57.895 2.53 2.61 34.26 3.02
339 340 1.077645 GAGACGCTGAGCTGCTTCAG 61.078 60.000 18.59 18.59 45.85 3.02
340 341 1.080230 GACGCTGAGCTGCTTCAGA 60.080 57.895 23.87 3.29 45.95 3.27
341 342 1.077645 GACGCTGAGCTGCTTCAGAG 61.078 60.000 23.87 22.60 45.95 3.35
342 343 1.079956 CGCTGAGCTGCTTCAGAGT 60.080 57.895 23.87 0.00 45.95 3.24
343 344 1.352882 CGCTGAGCTGCTTCAGAGTG 61.353 60.000 23.87 12.89 45.95 3.51
344 345 1.637478 GCTGAGCTGCTTCAGAGTGC 61.637 60.000 23.87 11.73 45.95 4.40
345 346 0.320508 CTGAGCTGCTTCAGAGTGCA 60.321 55.000 18.28 3.86 45.95 4.57
349 350 2.033141 TGCTTCAGAGTGCAGGCC 59.967 61.111 0.00 0.00 34.84 5.19
350 351 2.033141 GCTTCAGAGTGCAGGCCA 59.967 61.111 5.01 0.00 0.00 5.36
351 352 2.039405 GCTTCAGAGTGCAGGCCAG 61.039 63.158 5.01 0.00 0.00 4.85
352 353 1.376942 CTTCAGAGTGCAGGCCAGG 60.377 63.158 5.01 0.00 0.00 4.45
353 354 2.816601 CTTCAGAGTGCAGGCCAGGG 62.817 65.000 5.01 0.00 0.00 4.45
356 357 4.792804 GAGTGCAGGCCAGGGCTC 62.793 72.222 14.05 8.96 41.60 4.70
361 362 3.795041 CAGGCCAGGGCTCCTCTG 61.795 72.222 14.05 6.44 41.60 3.35
362 363 4.345286 AGGCCAGGGCTCCTCTGT 62.345 66.667 10.54 0.00 41.60 3.41
363 364 3.334054 GGCCAGGGCTCCTCTGTT 61.334 66.667 10.60 0.00 41.60 3.16
364 365 2.759795 GCCAGGGCTCCTCTGTTT 59.240 61.111 2.30 0.00 38.26 2.83
365 366 1.075659 GCCAGGGCTCCTCTGTTTT 59.924 57.895 2.30 0.00 38.26 2.43
366 367 0.540597 GCCAGGGCTCCTCTGTTTTT 60.541 55.000 2.30 0.00 38.26 1.94
388 389 8.532977 TTTTTCTTCTTGTTGTTGAGAAAAGG 57.467 30.769 8.86 0.00 35.92 3.11
389 390 5.248870 TCTTCTTGTTGTTGAGAAAAGGC 57.751 39.130 0.00 0.00 31.99 4.35
390 391 4.949856 TCTTCTTGTTGTTGAGAAAAGGCT 59.050 37.500 0.00 0.00 31.99 4.58
391 392 4.900635 TCTTGTTGTTGAGAAAAGGCTC 57.099 40.909 0.00 0.00 35.46 4.70
392 393 3.632145 TCTTGTTGTTGAGAAAAGGCTCC 59.368 43.478 0.00 0.00 33.95 4.70
393 394 3.297134 TGTTGTTGAGAAAAGGCTCCT 57.703 42.857 0.00 0.00 33.95 3.69
825 841 2.368011 CCTTCCGTTCCCCTCTCCC 61.368 68.421 0.00 0.00 0.00 4.30
826 842 1.306226 CTTCCGTTCCCCTCTCCCT 60.306 63.158 0.00 0.00 0.00 4.20
827 843 0.910088 CTTCCGTTCCCCTCTCCCTT 60.910 60.000 0.00 0.00 0.00 3.95
828 844 0.475048 TTCCGTTCCCCTCTCCCTTT 60.475 55.000 0.00 0.00 0.00 3.11
829 845 0.908180 TCCGTTCCCCTCTCCCTTTC 60.908 60.000 0.00 0.00 0.00 2.62
838 854 2.025793 CCCTCTCCCTTTCCTTTCCTTC 60.026 54.545 0.00 0.00 0.00 3.46
987 1003 1.519234 CAATCGTGAGGCTGCGCTA 60.519 57.895 9.73 0.00 0.00 4.26
1174 1190 1.680735 TCAGGCGCTGTTTGATTGTTT 59.319 42.857 7.64 0.00 32.61 2.83
1175 1191 2.881513 TCAGGCGCTGTTTGATTGTTTA 59.118 40.909 7.64 0.00 32.61 2.01
1176 1192 3.058293 TCAGGCGCTGTTTGATTGTTTAG 60.058 43.478 7.64 0.00 32.61 1.85
1177 1193 3.058293 CAGGCGCTGTTTGATTGTTTAGA 60.058 43.478 7.64 0.00 0.00 2.10
1178 1194 3.058224 AGGCGCTGTTTGATTGTTTAGAC 60.058 43.478 7.64 0.00 0.00 2.59
1180 1196 4.537015 GCGCTGTTTGATTGTTTAGACTT 58.463 39.130 0.00 0.00 0.00 3.01
1182 1198 5.147162 CGCTGTTTGATTGTTTAGACTTCC 58.853 41.667 0.00 0.00 0.00 3.46
1184 1200 6.503524 GCTGTTTGATTGTTTAGACTTCCAA 58.496 36.000 0.00 0.00 0.00 3.53
1185 1201 6.638468 GCTGTTTGATTGTTTAGACTTCCAAG 59.362 38.462 0.00 0.00 0.00 3.61
1186 1202 7.639113 TGTTTGATTGTTTAGACTTCCAAGT 57.361 32.000 0.00 0.00 43.16 3.16
1190 1206 9.581099 TTTGATTGTTTAGACTTCCAAGTTTTC 57.419 29.630 0.00 0.00 39.88 2.29
1334 1364 7.140048 GCTATACTCGTGCTTATACTGAACTT 58.860 38.462 0.00 0.00 0.00 2.66
1335 1365 8.288208 GCTATACTCGTGCTTATACTGAACTTA 58.712 37.037 0.00 0.00 0.00 2.24
1407 1437 6.234177 CAACTAGACCTTTTCACTCCAGATT 58.766 40.000 0.00 0.00 0.00 2.40
1520 1550 0.723981 GCGGTCTTGATGCTTCAGTC 59.276 55.000 2.23 0.00 32.27 3.51
1521 1551 1.674221 GCGGTCTTGATGCTTCAGTCT 60.674 52.381 2.23 0.00 32.27 3.24
1523 1553 3.739519 GCGGTCTTGATGCTTCAGTCTAT 60.740 47.826 2.23 0.00 32.27 1.98
1554 1584 5.567138 AGCAAATACTGATACAACAAGCC 57.433 39.130 0.00 0.00 0.00 4.35
1556 1586 5.124457 AGCAAATACTGATACAACAAGCCAG 59.876 40.000 0.00 0.00 0.00 4.85
1558 1588 5.435686 AATACTGATACAACAAGCCAGGA 57.564 39.130 0.00 0.00 0.00 3.86
1565 1596 1.003118 ACAACAAGCCAGGAATAGCGA 59.997 47.619 0.00 0.00 0.00 4.93
1585 1616 1.287425 CTTCCGCGGGTTCTATTCAC 58.713 55.000 27.83 0.00 0.00 3.18
1615 1646 3.014623 GTTAGGGTTTACCAGCATCCAC 58.985 50.000 0.69 0.00 43.89 4.02
1620 1651 4.724798 AGGGTTTACCAGCATCCACTTATA 59.275 41.667 0.69 0.00 43.89 0.98
1678 1709 4.151335 CACCTTAATGCTCATCATCGCTAC 59.849 45.833 0.00 0.00 33.40 3.58
1684 1715 5.852738 ATGCTCATCATCGCTACATTTAC 57.147 39.130 0.00 0.00 0.00 2.01
2009 2087 6.257849 CACAATTACATTAGGATGTGTAGCGT 59.742 38.462 2.47 0.00 45.80 5.07
2065 2143 0.323360 TGTGGGGCTGTAGGCAAATC 60.323 55.000 7.77 0.00 44.01 2.17
2175 2253 6.574093 GCTAAAACTAAGCTTGTTTCTTCGAC 59.426 38.462 20.06 9.09 36.72 4.20
2180 2258 1.491563 CTTGTTTCTTCGACCCGCG 59.508 57.895 0.00 0.00 42.69 6.46
2201 2279 3.740115 GTCATACAACTTGGTGGTGTCT 58.260 45.455 0.00 0.00 44.54 3.41
2228 2306 4.142271 CCTCACTGCAGTTGGTTTGTTTAA 60.142 41.667 18.94 0.00 0.00 1.52
2339 2417 3.837213 AACCTCAATCAAATGCTCACG 57.163 42.857 0.00 0.00 0.00 4.35
2473 2551 1.683385 GAAGTTGGAGCTTTGCTGGTT 59.317 47.619 0.00 0.00 39.88 3.67
2619 2701 3.000041 TGCCTTATGTTAGCACGTGAAG 59.000 45.455 22.23 11.67 0.00 3.02
2706 2788 3.969976 ACCTCTTTCCTATGCATGCTCTA 59.030 43.478 20.33 9.62 0.00 2.43
2797 2879 8.461222 GTTATTGACAAATCTCATGATTGTGGA 58.539 33.333 15.99 1.25 41.62 4.02
2812 2894 6.003326 TGATTGTGGAGTTGCTCAAATAAGA 58.997 36.000 0.00 0.00 31.08 2.10
3138 3220 3.011566 TGGTCAACAGTCAACAACCAT 57.988 42.857 0.00 0.00 32.08 3.55
3143 3225 4.097892 GTCAACAGTCAACAACCATCCTTT 59.902 41.667 0.00 0.00 0.00 3.11
3171 3256 0.249911 GTGCGGACCTCACAGACTTT 60.250 55.000 9.79 0.00 34.73 2.66
3172 3257 0.468226 TGCGGACCTCACAGACTTTT 59.532 50.000 0.00 0.00 0.00 2.27
3173 3258 1.134220 TGCGGACCTCACAGACTTTTT 60.134 47.619 0.00 0.00 0.00 1.94
3186 3271 4.884164 ACAGACTTTTTCTCCAAGTTCCAG 59.116 41.667 0.00 0.00 34.49 3.86
3214 3299 2.182842 CCCATTGCCTAGTGCTCGC 61.183 63.158 5.06 0.00 42.00 5.03
3374 3629 4.296690 GACGGAGGGAGTACATATTTTCG 58.703 47.826 0.00 0.00 0.00 3.46
3408 3663 2.163613 GGCGTGCAAGCTTAATTACCTT 59.836 45.455 23.72 0.00 37.29 3.50
3409 3664 3.375922 GGCGTGCAAGCTTAATTACCTTA 59.624 43.478 23.72 0.00 37.29 2.69
3505 3760 8.279970 TGAATGCTTGTAATTAAGTACTGCAT 57.720 30.769 25.80 25.80 41.71 3.96
3537 3792 4.154942 TCTTTAGTTACGACAAGGGAGGT 58.845 43.478 0.00 0.00 0.00 3.85
3609 3950 4.399934 TGTAGTGGTATGCGAACATAGTCA 59.600 41.667 0.00 0.00 39.44 3.41
3774 4115 8.931385 ATGAATTTTCCTTGTTTTATCGATGG 57.069 30.769 8.54 0.00 0.00 3.51
3864 4213 7.066043 ACGTTCATAAAAATTATAACCGAGCCA 59.934 33.333 0.00 0.00 0.00 4.75
3866 4215 9.744468 GTTCATAAAAATTATAACCGAGCCATT 57.256 29.630 0.00 0.00 0.00 3.16
3924 4273 6.785337 TGCCTGCTAACTACAGTAATAAGA 57.215 37.500 0.00 0.00 33.09 2.10
3932 4281 7.710044 GCTAACTACAGTAATAAGACCCCTTTC 59.290 40.741 0.00 0.00 33.94 2.62
4124 4473 3.994392 TGATGTTTGCTACTTCTTCCGTC 59.006 43.478 6.87 0.00 33.32 4.79
4265 4614 5.704888 TGCCACTGGTAATTTATTTTCACG 58.295 37.500 0.00 0.00 0.00 4.35
4386 4735 1.537135 GGAGAGCATGAGAAGTACCGC 60.537 57.143 0.00 0.00 0.00 5.68
4547 4896 2.955660 CCTTGGTGGCTGTTTGACTTAA 59.044 45.455 0.00 0.00 0.00 1.85
4609 4958 5.880332 TCTGTCAATTCCTTAACTGGCATAC 59.120 40.000 0.00 0.00 0.00 2.39
4738 5088 5.627182 AATGTCCTCTTGCTCTACATGAT 57.373 39.130 0.00 0.00 32.46 2.45
4763 5113 8.902540 TTTACAATCCTATCGTTATTGCTCAT 57.097 30.769 0.00 0.00 34.63 2.90
4966 5317 7.550196 TCGGTGGTAAAATAGGAATTTAGACAC 59.450 37.037 0.00 0.00 34.12 3.67
4968 5319 9.016438 GGTGGTAAAATAGGAATTTAGACACAA 57.984 33.333 12.09 0.00 35.60 3.33
5007 5358 3.181475 CGCTGGTGTCTCCTGTTACATAT 60.181 47.826 0.00 0.00 37.45 1.78
5015 5366 7.179338 GGTGTCTCCTGTTACATATATCCTGAT 59.821 40.741 0.00 0.00 0.00 2.90
5117 5468 6.616237 AAGAGATTTTGCTCATGGGATTTT 57.384 33.333 0.00 0.00 37.37 1.82
5119 5470 7.722949 AGAGATTTTGCTCATGGGATTTTTA 57.277 32.000 0.00 0.00 37.37 1.52
5141 5492 3.403228 AAGACATACCCATTGCCCAAT 57.597 42.857 0.00 0.00 0.00 3.16
5621 5981 4.207891 ACCTCTTGCAGTTAACATCGAT 57.792 40.909 8.61 0.00 0.00 3.59
5626 5986 5.927030 TCTTGCAGTTAACATCGATTGTTC 58.073 37.500 8.61 4.69 45.55 3.18
5651 6011 6.198966 CAGGTGTAAAAGAAAAGCACAATCAC 59.801 38.462 0.00 0.00 0.00 3.06
5652 6012 6.039616 GGTGTAAAAGAAAAGCACAATCACA 58.960 36.000 0.00 0.00 0.00 3.58
5747 6111 9.516314 CCAGTTCTAAACTTTTCTTTTACCAAG 57.484 33.333 0.00 0.00 40.46 3.61
5923 6291 2.200337 AAGAAAACCGCTGCACCCC 61.200 57.895 0.00 0.00 0.00 4.95
6143 6512 8.989131 ACTACTGTGATAATACCCTAACACATT 58.011 33.333 0.00 0.00 37.56 2.71
6356 6983 4.653341 CAGATCCTCCCTGAGAAATACTGT 59.347 45.833 0.00 0.00 33.65 3.55
6417 7044 5.806366 TGATTGTGTAATCTGCATGACTG 57.194 39.130 0.00 0.00 42.56 3.51
6434 7061 3.204526 GACTGCAATTGATCTCTCCCAG 58.795 50.000 10.34 6.75 0.00 4.45
6496 7123 4.338118 TCTGTGACGTCATAGACATGCATA 59.662 41.667 33.16 14.66 38.84 3.14
6793 7425 0.995024 CTGACCCATGGAGACCCTTT 59.005 55.000 15.22 0.00 0.00 3.11
6820 7452 1.518572 CACGGCGCGACTATTCCTT 60.519 57.895 12.10 0.00 0.00 3.36
6822 7454 1.518572 CGGCGCGACTATTCCTTGT 60.519 57.895 12.10 0.00 0.00 3.16
6905 7537 0.618458 TGGGATACACCAGCCTGTTC 59.382 55.000 0.00 0.00 41.20 3.18
6915 7547 1.402787 CAGCCTGTTCCCTGTTTTGT 58.597 50.000 0.00 0.00 0.00 2.83
6951 7583 7.850268 TTTTGTTTCTGCTTTTTGCTTTTTC 57.150 28.000 0.00 0.00 43.37 2.29
7625 8611 6.163135 TCAGATCGTCTCTAGTAGATCACA 57.837 41.667 0.00 0.00 41.24 3.58
7626 8612 6.583562 TCAGATCGTCTCTAGTAGATCACAA 58.416 40.000 0.00 0.00 41.24 3.33
7627 8613 7.220740 TCAGATCGTCTCTAGTAGATCACAAT 58.779 38.462 0.00 0.00 41.24 2.71
7628 8614 7.386573 TCAGATCGTCTCTAGTAGATCACAATC 59.613 40.741 0.00 1.90 41.24 2.67
7629 8615 7.387673 CAGATCGTCTCTAGTAGATCACAATCT 59.612 40.741 0.00 4.06 41.24 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.222847 CTAGGAGAACCGGCGCCC 62.223 72.222 23.46 6.58 41.83 6.13
8 9 3.140225 CTCTAGGAGAACCGGCGCC 62.140 68.421 19.07 19.07 41.83 6.53
9 10 2.413765 CTCTAGGAGAACCGGCGC 59.586 66.667 0.00 0.00 41.83 6.53
10 11 1.726533 GACCTCTAGGAGAACCGGCG 61.727 65.000 0.00 0.00 41.83 6.46
11 12 0.683504 TGACCTCTAGGAGAACCGGC 60.684 60.000 0.00 0.00 41.83 6.13
12 13 2.074729 ATGACCTCTAGGAGAACCGG 57.925 55.000 0.00 0.00 41.83 5.28
13 14 3.024547 TGAATGACCTCTAGGAGAACCG 58.975 50.000 2.23 0.00 41.83 4.44
14 15 5.622346 ATTGAATGACCTCTAGGAGAACC 57.378 43.478 2.23 0.00 38.94 3.62
15 16 6.410540 ACAATTGAATGACCTCTAGGAGAAC 58.589 40.000 13.59 0.00 38.94 3.01
16 17 6.627087 ACAATTGAATGACCTCTAGGAGAA 57.373 37.500 13.59 0.00 38.94 2.87
17 18 6.897966 ACTACAATTGAATGACCTCTAGGAGA 59.102 38.462 13.59 0.00 38.94 3.71
18 19 7.118496 ACTACAATTGAATGACCTCTAGGAG 57.882 40.000 13.59 0.00 38.94 3.69
19 20 6.667848 TGACTACAATTGAATGACCTCTAGGA 59.332 38.462 13.59 0.00 38.94 2.94
20 21 6.878317 TGACTACAATTGAATGACCTCTAGG 58.122 40.000 13.59 0.00 42.17 3.02
21 22 8.200120 TGATGACTACAATTGAATGACCTCTAG 58.800 37.037 13.59 2.56 0.00 2.43
22 23 8.078060 TGATGACTACAATTGAATGACCTCTA 57.922 34.615 13.59 0.00 0.00 2.43
23 24 6.950842 TGATGACTACAATTGAATGACCTCT 58.049 36.000 13.59 0.00 0.00 3.69
24 25 7.615582 TTGATGACTACAATTGAATGACCTC 57.384 36.000 13.59 5.47 0.00 3.85
25 26 8.585471 ATTTGATGACTACAATTGAATGACCT 57.415 30.769 13.59 0.00 0.00 3.85
26 27 8.680903 AGATTTGATGACTACAATTGAATGACC 58.319 33.333 13.59 0.00 0.00 4.02
27 28 9.499585 CAGATTTGATGACTACAATTGAATGAC 57.500 33.333 13.59 2.97 0.00 3.06
28 29 8.680001 CCAGATTTGATGACTACAATTGAATGA 58.320 33.333 13.59 0.00 0.00 2.57
29 30 8.680001 TCCAGATTTGATGACTACAATTGAATG 58.320 33.333 13.59 4.12 0.00 2.67
30 31 8.680903 GTCCAGATTTGATGACTACAATTGAAT 58.319 33.333 13.59 0.00 0.00 2.57
31 32 7.665145 TGTCCAGATTTGATGACTACAATTGAA 59.335 33.333 13.59 0.00 0.00 2.69
32 33 7.167535 TGTCCAGATTTGATGACTACAATTGA 58.832 34.615 13.59 0.00 0.00 2.57
33 34 7.120285 ACTGTCCAGATTTGATGACTACAATTG 59.880 37.037 3.24 3.24 0.00 2.32
34 35 7.120285 CACTGTCCAGATTTGATGACTACAATT 59.880 37.037 0.40 0.00 0.00 2.32
35 36 6.596888 CACTGTCCAGATTTGATGACTACAAT 59.403 38.462 0.40 0.00 0.00 2.71
36 37 5.934043 CACTGTCCAGATTTGATGACTACAA 59.066 40.000 0.40 0.00 0.00 2.41
37 38 5.482006 CACTGTCCAGATTTGATGACTACA 58.518 41.667 0.40 0.00 0.00 2.74
38 39 4.872691 CCACTGTCCAGATTTGATGACTAC 59.127 45.833 0.40 0.00 0.00 2.73
39 40 4.777366 TCCACTGTCCAGATTTGATGACTA 59.223 41.667 0.40 0.00 0.00 2.59
40 41 3.584406 TCCACTGTCCAGATTTGATGACT 59.416 43.478 0.40 0.00 0.00 3.41
41 42 3.686726 GTCCACTGTCCAGATTTGATGAC 59.313 47.826 0.40 0.00 0.00 3.06
42 43 3.307691 GGTCCACTGTCCAGATTTGATGA 60.308 47.826 0.40 0.00 0.00 2.92
43 44 3.012518 GGTCCACTGTCCAGATTTGATG 58.987 50.000 0.40 0.00 0.00 3.07
44 45 2.644299 TGGTCCACTGTCCAGATTTGAT 59.356 45.455 0.40 0.00 0.00 2.57
45 46 2.054021 TGGTCCACTGTCCAGATTTGA 58.946 47.619 0.40 0.00 0.00 2.69
46 47 2.566833 TGGTCCACTGTCCAGATTTG 57.433 50.000 0.40 0.00 0.00 2.32
47 48 2.815589 GCTTGGTCCACTGTCCAGATTT 60.816 50.000 0.40 0.00 35.05 2.17
48 49 1.271597 GCTTGGTCCACTGTCCAGATT 60.272 52.381 0.40 0.00 35.05 2.40
49 50 0.326264 GCTTGGTCCACTGTCCAGAT 59.674 55.000 0.40 0.00 35.05 2.90
50 51 1.754745 GCTTGGTCCACTGTCCAGA 59.245 57.895 0.40 0.00 35.05 3.86
51 52 1.669115 CGCTTGGTCCACTGTCCAG 60.669 63.158 0.00 0.00 35.05 3.86
52 53 1.691195 TTCGCTTGGTCCACTGTCCA 61.691 55.000 0.00 0.00 0.00 4.02
53 54 1.070786 TTCGCTTGGTCCACTGTCC 59.929 57.895 0.00 0.00 0.00 4.02
54 55 0.249911 AGTTCGCTTGGTCCACTGTC 60.250 55.000 0.00 0.00 0.00 3.51
55 56 0.180406 AAGTTCGCTTGGTCCACTGT 59.820 50.000 0.00 0.00 35.84 3.55
56 57 1.798813 GTAAGTTCGCTTGGTCCACTG 59.201 52.381 0.00 0.00 38.06 3.66
57 58 1.270678 GGTAAGTTCGCTTGGTCCACT 60.271 52.381 0.00 0.00 38.06 4.00
58 59 1.154197 GGTAAGTTCGCTTGGTCCAC 58.846 55.000 0.00 0.00 38.06 4.02
59 60 1.053424 AGGTAAGTTCGCTTGGTCCA 58.947 50.000 0.00 0.00 38.06 4.02
60 61 2.028748 TGTAGGTAAGTTCGCTTGGTCC 60.029 50.000 0.00 0.00 38.06 4.46
61 62 3.308438 TGTAGGTAAGTTCGCTTGGTC 57.692 47.619 0.00 0.00 38.06 4.02
62 63 3.756933 TTGTAGGTAAGTTCGCTTGGT 57.243 42.857 0.00 0.00 38.06 3.67
63 64 3.435671 CCTTTGTAGGTAAGTTCGCTTGG 59.564 47.826 0.00 0.00 36.74 3.61
64 65 4.312443 TCCTTTGTAGGTAAGTTCGCTTG 58.688 43.478 0.00 0.00 42.60 4.01
65 66 4.612264 TCCTTTGTAGGTAAGTTCGCTT 57.388 40.909 0.00 0.00 42.60 4.68
66 67 4.612264 TTCCTTTGTAGGTAAGTTCGCT 57.388 40.909 0.00 0.00 42.60 4.93
67 68 5.678132 TTTTCCTTTGTAGGTAAGTTCGC 57.322 39.130 0.00 0.00 42.60 4.70
87 88 5.047092 GTCCATGTGTCCCATTCATCTTTTT 60.047 40.000 0.00 0.00 0.00 1.94
88 89 4.463891 GTCCATGTGTCCCATTCATCTTTT 59.536 41.667 0.00 0.00 0.00 2.27
89 90 4.019174 GTCCATGTGTCCCATTCATCTTT 58.981 43.478 0.00 0.00 0.00 2.52
90 91 3.267812 AGTCCATGTGTCCCATTCATCTT 59.732 43.478 0.00 0.00 0.00 2.40
91 92 2.848694 AGTCCATGTGTCCCATTCATCT 59.151 45.455 0.00 0.00 0.00 2.90
92 93 2.947652 CAGTCCATGTGTCCCATTCATC 59.052 50.000 0.00 0.00 0.00 2.92
93 94 2.309755 ACAGTCCATGTGTCCCATTCAT 59.690 45.455 0.00 0.00 41.91 2.57
94 95 1.704628 ACAGTCCATGTGTCCCATTCA 59.295 47.619 0.00 0.00 41.91 2.57
95 96 2.496899 ACAGTCCATGTGTCCCATTC 57.503 50.000 0.00 0.00 41.91 2.67
104 105 1.539869 AGCTCCCCACAGTCCATGT 60.540 57.895 0.00 0.00 45.43 3.21
105 106 1.222936 GAGCTCCCCACAGTCCATG 59.777 63.158 0.87 0.00 0.00 3.66
106 107 1.081833 AGAGCTCCCCACAGTCCAT 59.918 57.895 10.93 0.00 0.00 3.41
107 108 1.915266 CAGAGCTCCCCACAGTCCA 60.915 63.158 10.93 0.00 0.00 4.02
108 109 2.664081 CCAGAGCTCCCCACAGTCC 61.664 68.421 10.93 0.00 0.00 3.85
109 110 1.893919 GACCAGAGCTCCCCACAGTC 61.894 65.000 10.93 4.97 0.00 3.51
110 111 1.915769 GACCAGAGCTCCCCACAGT 60.916 63.158 10.93 0.00 0.00 3.55
111 112 2.664081 GGACCAGAGCTCCCCACAG 61.664 68.421 10.93 0.00 0.00 3.66
112 113 2.607750 GGACCAGAGCTCCCCACA 60.608 66.667 10.93 0.00 0.00 4.17
113 114 2.224159 TTGGACCAGAGCTCCCCAC 61.224 63.158 10.93 0.00 0.00 4.61
114 115 2.206900 TTGGACCAGAGCTCCCCA 59.793 61.111 10.93 10.21 0.00 4.96
115 116 0.617820 TAGTTGGACCAGAGCTCCCC 60.618 60.000 10.93 7.57 0.00 4.81
116 117 1.276622 TTAGTTGGACCAGAGCTCCC 58.723 55.000 10.93 4.82 0.00 4.30
117 118 3.707102 ACTATTAGTTGGACCAGAGCTCC 59.293 47.826 10.93 0.00 0.00 4.70
118 119 4.160626 ACACTATTAGTTGGACCAGAGCTC 59.839 45.833 5.27 5.27 0.00 4.09
119 120 4.081420 CACACTATTAGTTGGACCAGAGCT 60.081 45.833 0.00 0.00 0.00 4.09
120 121 4.184629 CACACTATTAGTTGGACCAGAGC 58.815 47.826 0.00 0.00 0.00 4.09
121 122 4.184629 GCACACTATTAGTTGGACCAGAG 58.815 47.826 0.00 0.00 0.00 3.35
122 123 3.055385 GGCACACTATTAGTTGGACCAGA 60.055 47.826 0.00 0.00 0.00 3.86
123 124 3.270877 GGCACACTATTAGTTGGACCAG 58.729 50.000 0.00 0.00 0.00 4.00
124 125 2.640332 TGGCACACTATTAGTTGGACCA 59.360 45.455 0.00 0.00 0.00 4.02
125 126 3.270877 CTGGCACACTATTAGTTGGACC 58.729 50.000 0.00 0.00 0.00 4.46
126 127 3.270877 CCTGGCACACTATTAGTTGGAC 58.729 50.000 0.00 0.00 0.00 4.02
127 128 2.355716 GCCTGGCACACTATTAGTTGGA 60.356 50.000 15.17 0.00 0.00 3.53
128 129 2.017049 GCCTGGCACACTATTAGTTGG 58.983 52.381 15.17 0.00 0.00 3.77
129 130 1.665679 CGCCTGGCACACTATTAGTTG 59.334 52.381 20.29 0.00 0.00 3.16
130 131 1.406887 CCGCCTGGCACACTATTAGTT 60.407 52.381 20.29 0.00 0.00 2.24
131 132 0.178068 CCGCCTGGCACACTATTAGT 59.822 55.000 20.29 0.00 0.00 2.24
132 133 0.464036 TCCGCCTGGCACACTATTAG 59.536 55.000 20.29 0.00 34.14 1.73
133 134 0.177141 GTCCGCCTGGCACACTATTA 59.823 55.000 20.29 0.00 34.14 0.98
134 135 1.078426 GTCCGCCTGGCACACTATT 60.078 57.895 20.29 0.00 34.14 1.73
135 136 2.584608 GTCCGCCTGGCACACTAT 59.415 61.111 20.29 0.00 34.14 2.12
136 137 3.702048 GGTCCGCCTGGCACACTA 61.702 66.667 20.29 0.00 34.14 2.74
153 154 2.376109 TCTTAAGCTGGTAGTCCGGAG 58.624 52.381 3.06 0.00 42.46 4.63
154 155 2.494870 GTTCTTAAGCTGGTAGTCCGGA 59.505 50.000 0.00 0.00 42.46 5.14
155 156 2.734492 CGTTCTTAAGCTGGTAGTCCGG 60.734 54.545 0.00 0.00 42.72 5.14
156 157 2.163010 TCGTTCTTAAGCTGGTAGTCCG 59.837 50.000 0.00 0.00 36.30 4.79
157 158 3.863142 TCGTTCTTAAGCTGGTAGTCC 57.137 47.619 0.00 0.00 0.00 3.85
158 159 5.867716 TCAAATCGTTCTTAAGCTGGTAGTC 59.132 40.000 0.00 0.00 0.00 2.59
159 160 5.790593 TCAAATCGTTCTTAAGCTGGTAGT 58.209 37.500 0.00 0.00 0.00 2.73
160 161 5.292101 CCTCAAATCGTTCTTAAGCTGGTAG 59.708 44.000 0.00 0.00 0.00 3.18
161 162 5.046878 TCCTCAAATCGTTCTTAAGCTGGTA 60.047 40.000 0.00 0.00 0.00 3.25
162 163 4.003648 CCTCAAATCGTTCTTAAGCTGGT 58.996 43.478 0.00 0.00 0.00 4.00
163 164 4.253685 TCCTCAAATCGTTCTTAAGCTGG 58.746 43.478 0.00 0.00 0.00 4.85
164 165 5.862924 TTCCTCAAATCGTTCTTAAGCTG 57.137 39.130 0.00 0.00 0.00 4.24
165 166 7.454260 AATTTCCTCAAATCGTTCTTAAGCT 57.546 32.000 0.00 0.00 30.37 3.74
166 167 7.807907 TCAAATTTCCTCAAATCGTTCTTAAGC 59.192 33.333 0.00 0.00 30.37 3.09
167 168 9.677567 TTCAAATTTCCTCAAATCGTTCTTAAG 57.322 29.630 0.00 0.00 30.37 1.85
170 171 9.546428 AAATTCAAATTTCCTCAAATCGTTCTT 57.454 25.926 0.00 0.00 33.54 2.52
171 172 9.196552 GAAATTCAAATTTCCTCAAATCGTTCT 57.803 29.630 14.53 0.00 45.29 3.01
194 195 9.613428 CCAAATGTACATGGATTAGTCTAGAAA 57.387 33.333 9.63 0.00 39.12 2.52
195 196 8.768397 ACCAAATGTACATGGATTAGTCTAGAA 58.232 33.333 20.06 0.00 39.12 2.10
196 197 8.319057 ACCAAATGTACATGGATTAGTCTAGA 57.681 34.615 20.06 0.00 39.12 2.43
234 235 7.992033 TCACCAAATGTTCATGGATTTCTTTTT 59.008 29.630 0.00 0.00 39.12 1.94
235 236 7.442062 GTCACCAAATGTTCATGGATTTCTTTT 59.558 33.333 0.00 0.00 39.12 2.27
236 237 6.930722 GTCACCAAATGTTCATGGATTTCTTT 59.069 34.615 0.00 0.00 39.12 2.52
237 238 6.268387 AGTCACCAAATGTTCATGGATTTCTT 59.732 34.615 0.00 0.00 39.12 2.52
238 239 5.776716 AGTCACCAAATGTTCATGGATTTCT 59.223 36.000 0.00 0.00 39.12 2.52
239 240 6.029346 AGTCACCAAATGTTCATGGATTTC 57.971 37.500 0.00 0.00 39.12 2.17
240 241 6.350445 GCTAGTCACCAAATGTTCATGGATTT 60.350 38.462 0.00 0.00 39.12 2.17
241 242 5.126061 GCTAGTCACCAAATGTTCATGGATT 59.874 40.000 0.00 0.00 39.12 3.01
242 243 4.641989 GCTAGTCACCAAATGTTCATGGAT 59.358 41.667 0.00 0.00 39.12 3.41
243 244 4.009675 GCTAGTCACCAAATGTTCATGGA 58.990 43.478 0.00 0.00 39.12 3.41
244 245 3.758023 TGCTAGTCACCAAATGTTCATGG 59.242 43.478 0.00 0.00 42.60 3.66
245 246 5.571784 ATGCTAGTCACCAAATGTTCATG 57.428 39.130 0.00 0.00 0.00 3.07
246 247 5.105635 CCAATGCTAGTCACCAAATGTTCAT 60.106 40.000 0.00 0.00 0.00 2.57
247 248 4.218200 CCAATGCTAGTCACCAAATGTTCA 59.782 41.667 0.00 0.00 0.00 3.18
248 249 4.458989 TCCAATGCTAGTCACCAAATGTTC 59.541 41.667 0.00 0.00 0.00 3.18
249 250 4.218417 GTCCAATGCTAGTCACCAAATGTT 59.782 41.667 0.00 0.00 0.00 2.71
250 251 3.758554 GTCCAATGCTAGTCACCAAATGT 59.241 43.478 0.00 0.00 0.00 2.71
251 252 3.181507 CGTCCAATGCTAGTCACCAAATG 60.182 47.826 0.00 0.00 0.00 2.32
252 253 3.009723 CGTCCAATGCTAGTCACCAAAT 58.990 45.455 0.00 0.00 0.00 2.32
253 254 2.037902 TCGTCCAATGCTAGTCACCAAA 59.962 45.455 0.00 0.00 0.00 3.28
254 255 1.621317 TCGTCCAATGCTAGTCACCAA 59.379 47.619 0.00 0.00 0.00 3.67
255 256 1.067142 GTCGTCCAATGCTAGTCACCA 60.067 52.381 0.00 0.00 0.00 4.17
256 257 1.204941 AGTCGTCCAATGCTAGTCACC 59.795 52.381 0.00 0.00 0.00 4.02
257 258 2.656560 AGTCGTCCAATGCTAGTCAC 57.343 50.000 0.00 0.00 0.00 3.67
258 259 4.794278 TTTAGTCGTCCAATGCTAGTCA 57.206 40.909 0.00 0.00 0.00 3.41
259 260 5.062308 CACTTTTAGTCGTCCAATGCTAGTC 59.938 44.000 0.00 0.00 0.00 2.59
260 261 4.929808 CACTTTTAGTCGTCCAATGCTAGT 59.070 41.667 0.00 0.00 0.00 2.57
261 262 4.929808 ACACTTTTAGTCGTCCAATGCTAG 59.070 41.667 0.00 0.00 0.00 3.42
262 263 4.890088 ACACTTTTAGTCGTCCAATGCTA 58.110 39.130 0.00 0.00 0.00 3.49
263 264 3.740115 ACACTTTTAGTCGTCCAATGCT 58.260 40.909 0.00 0.00 0.00 3.79
264 265 4.024387 TGAACACTTTTAGTCGTCCAATGC 60.024 41.667 0.00 0.00 0.00 3.56
265 266 5.666969 TGAACACTTTTAGTCGTCCAATG 57.333 39.130 0.00 0.00 0.00 2.82
266 267 6.459161 GGTTTGAACACTTTTAGTCGTCCAAT 60.459 38.462 0.00 0.00 0.00 3.16
267 268 5.163733 GGTTTGAACACTTTTAGTCGTCCAA 60.164 40.000 0.00 0.00 0.00 3.53
268 269 4.333372 GGTTTGAACACTTTTAGTCGTCCA 59.667 41.667 0.00 0.00 0.00 4.02
269 270 4.551410 CGGTTTGAACACTTTTAGTCGTCC 60.551 45.833 0.00 0.00 0.00 4.79
270 271 4.033243 ACGGTTTGAACACTTTTAGTCGTC 59.967 41.667 0.00 0.00 0.00 4.20
271 272 3.934579 ACGGTTTGAACACTTTTAGTCGT 59.065 39.130 0.00 0.00 0.00 4.34
272 273 4.525411 ACGGTTTGAACACTTTTAGTCG 57.475 40.909 0.00 0.00 0.00 4.18
273 274 6.316319 TCAAACGGTTTGAACACTTTTAGTC 58.684 36.000 28.65 0.00 45.94 2.59
274 275 6.256912 TCAAACGGTTTGAACACTTTTAGT 57.743 33.333 28.65 0.00 45.94 2.24
286 287 6.434596 TGTAATGTCTGAATCAAACGGTTTG 58.565 36.000 24.07 24.07 41.96 2.93
287 288 6.485313 TCTGTAATGTCTGAATCAAACGGTTT 59.515 34.615 0.00 0.00 0.00 3.27
288 289 5.995282 TCTGTAATGTCTGAATCAAACGGTT 59.005 36.000 0.00 0.00 0.00 4.44
289 290 5.547465 TCTGTAATGTCTGAATCAAACGGT 58.453 37.500 0.00 0.00 0.00 4.83
290 291 6.668541 ATCTGTAATGTCTGAATCAAACGG 57.331 37.500 0.00 0.00 0.00 4.44
291 292 8.843733 CAAAATCTGTAATGTCTGAATCAAACG 58.156 33.333 0.00 0.00 0.00 3.60
292 293 9.683069 ACAAAATCTGTAATGTCTGAATCAAAC 57.317 29.630 0.00 0.00 36.10 2.93
293 294 9.681692 CACAAAATCTGTAATGTCTGAATCAAA 57.318 29.630 0.00 0.00 36.10 2.69
294 295 8.298854 CCACAAAATCTGTAATGTCTGAATCAA 58.701 33.333 0.00 0.00 36.10 2.57
295 296 7.665145 TCCACAAAATCTGTAATGTCTGAATCA 59.335 33.333 0.00 0.00 36.10 2.57
296 297 8.044060 TCCACAAAATCTGTAATGTCTGAATC 57.956 34.615 0.00 0.00 36.10 2.52
297 298 7.884877 TCTCCACAAAATCTGTAATGTCTGAAT 59.115 33.333 0.00 0.00 36.10 2.57
298 299 7.173218 GTCTCCACAAAATCTGTAATGTCTGAA 59.827 37.037 0.00 0.00 36.10 3.02
299 300 6.650807 GTCTCCACAAAATCTGTAATGTCTGA 59.349 38.462 0.00 0.00 36.10 3.27
300 301 6.401474 CGTCTCCACAAAATCTGTAATGTCTG 60.401 42.308 0.00 0.00 36.10 3.51
301 302 5.639506 CGTCTCCACAAAATCTGTAATGTCT 59.360 40.000 0.00 0.00 36.10 3.41
302 303 5.671329 GCGTCTCCACAAAATCTGTAATGTC 60.671 44.000 0.00 0.00 36.10 3.06
303 304 4.154195 GCGTCTCCACAAAATCTGTAATGT 59.846 41.667 0.00 0.00 36.10 2.71
304 305 4.393062 AGCGTCTCCACAAAATCTGTAATG 59.607 41.667 0.00 0.00 36.10 1.90
305 306 4.393062 CAGCGTCTCCACAAAATCTGTAAT 59.607 41.667 0.00 0.00 36.10 1.89
306 307 3.745975 CAGCGTCTCCACAAAATCTGTAA 59.254 43.478 0.00 0.00 36.10 2.41
307 308 3.006430 TCAGCGTCTCCACAAAATCTGTA 59.994 43.478 0.00 0.00 36.10 2.74
308 309 2.146342 CAGCGTCTCCACAAAATCTGT 58.854 47.619 0.00 0.00 39.56 3.41
309 310 2.414481 CTCAGCGTCTCCACAAAATCTG 59.586 50.000 0.00 0.00 0.00 2.90
310 311 2.693069 CTCAGCGTCTCCACAAAATCT 58.307 47.619 0.00 0.00 0.00 2.40
311 312 1.129437 GCTCAGCGTCTCCACAAAATC 59.871 52.381 0.00 0.00 0.00 2.17
312 313 1.160137 GCTCAGCGTCTCCACAAAAT 58.840 50.000 0.00 0.00 0.00 1.82
313 314 0.106708 AGCTCAGCGTCTCCACAAAA 59.893 50.000 0.00 0.00 0.00 2.44
314 315 0.601046 CAGCTCAGCGTCTCCACAAA 60.601 55.000 0.00 0.00 0.00 2.83
315 316 1.005748 CAGCTCAGCGTCTCCACAA 60.006 57.895 0.00 0.00 0.00 3.33
316 317 2.653115 CAGCTCAGCGTCTCCACA 59.347 61.111 0.00 0.00 0.00 4.17
317 318 2.778309 AAGCAGCTCAGCGTCTCCAC 62.778 60.000 0.00 0.00 40.15 4.02
318 319 2.498291 GAAGCAGCTCAGCGTCTCCA 62.498 60.000 0.00 0.00 39.45 3.86
319 320 1.809209 GAAGCAGCTCAGCGTCTCC 60.809 63.158 0.00 0.00 39.45 3.71
320 321 1.077645 CTGAAGCAGCTCAGCGTCTC 61.078 60.000 12.01 2.42 42.38 3.36
321 322 1.079956 CTGAAGCAGCTCAGCGTCT 60.080 57.895 12.01 0.00 42.38 4.18
322 323 1.077645 CTCTGAAGCAGCTCAGCGTC 61.078 60.000 13.97 5.24 42.25 5.19
323 324 1.079956 CTCTGAAGCAGCTCAGCGT 60.080 57.895 13.97 0.00 42.25 5.07
324 325 1.079956 ACTCTGAAGCAGCTCAGCG 60.080 57.895 13.97 11.52 42.25 5.18
325 326 1.637478 GCACTCTGAAGCAGCTCAGC 61.637 60.000 13.97 0.00 42.25 4.26
326 327 0.320508 TGCACTCTGAAGCAGCTCAG 60.321 55.000 13.03 13.03 43.62 3.35
327 328 1.750297 TGCACTCTGAAGCAGCTCA 59.250 52.632 0.00 0.00 35.51 4.26
328 329 4.689484 TGCACTCTGAAGCAGCTC 57.311 55.556 0.00 0.00 35.51 4.09
332 333 2.033141 GGCCTGCACTCTGAAGCA 59.967 61.111 0.00 4.66 39.25 3.91
333 334 2.033141 TGGCCTGCACTCTGAAGC 59.967 61.111 3.32 0.00 0.00 3.86
334 335 1.376942 CCTGGCCTGCACTCTGAAG 60.377 63.158 3.32 0.00 0.00 3.02
335 336 2.752358 CCTGGCCTGCACTCTGAA 59.248 61.111 3.32 0.00 0.00 3.02
336 337 3.324930 CCCTGGCCTGCACTCTGA 61.325 66.667 3.32 0.00 0.00 3.27
339 340 4.792804 GAGCCCTGGCCTGCACTC 62.793 72.222 3.32 9.25 43.17 3.51
344 345 3.795041 CAGAGGAGCCCTGGCCTG 61.795 72.222 3.32 2.54 43.17 4.85
345 346 3.880033 AACAGAGGAGCCCTGGCCT 62.880 63.158 3.32 0.00 43.17 5.19
346 347 2.432174 AAAACAGAGGAGCCCTGGCC 62.432 60.000 4.13 0.00 43.17 5.36
347 348 0.540597 AAAAACAGAGGAGCCCTGGC 60.541 55.000 0.00 0.00 42.33 4.85
348 349 3.753787 AAAAACAGAGGAGCCCTGG 57.246 52.632 0.00 0.00 36.03 4.45
363 364 7.117667 GCCTTTTCTCAACAACAAGAAGAAAAA 59.882 33.333 9.17 0.00 34.70 1.94
364 365 6.589907 GCCTTTTCTCAACAACAAGAAGAAAA 59.410 34.615 7.96 7.96 33.32 2.29
365 366 6.071391 AGCCTTTTCTCAACAACAAGAAGAAA 60.071 34.615 0.00 0.00 33.32 2.52
366 367 5.418840 AGCCTTTTCTCAACAACAAGAAGAA 59.581 36.000 0.00 0.00 33.32 2.52
367 368 4.949856 AGCCTTTTCTCAACAACAAGAAGA 59.050 37.500 0.00 0.00 33.32 2.87
368 369 5.254339 AGCCTTTTCTCAACAACAAGAAG 57.746 39.130 0.00 0.00 33.32 2.85
369 370 4.097892 GGAGCCTTTTCTCAACAACAAGAA 59.902 41.667 0.00 0.00 34.84 2.52
370 371 3.632145 GGAGCCTTTTCTCAACAACAAGA 59.368 43.478 0.00 0.00 34.84 3.02
371 372 3.633986 AGGAGCCTTTTCTCAACAACAAG 59.366 43.478 0.00 0.00 34.84 3.16
372 373 3.631250 AGGAGCCTTTTCTCAACAACAA 58.369 40.909 0.00 0.00 34.84 2.83
373 374 3.297134 AGGAGCCTTTTCTCAACAACA 57.703 42.857 0.00 0.00 34.84 3.33
825 841 2.380249 AGGGAAGGGAAGGAAAGGAAAG 59.620 50.000 0.00 0.00 0.00 2.62
826 842 2.439265 AGGGAAGGGAAGGAAAGGAAA 58.561 47.619 0.00 0.00 0.00 3.13
827 843 2.149521 AGGGAAGGGAAGGAAAGGAA 57.850 50.000 0.00 0.00 0.00 3.36
828 844 1.993301 GAAGGGAAGGGAAGGAAAGGA 59.007 52.381 0.00 0.00 0.00 3.36
829 845 1.340114 CGAAGGGAAGGGAAGGAAAGG 60.340 57.143 0.00 0.00 0.00 3.11
838 854 1.404843 CTAGGAGACGAAGGGAAGGG 58.595 60.000 0.00 0.00 0.00 3.95
947 963 2.825836 GCCACCATGAAGGGAGCG 60.826 66.667 0.00 0.00 43.89 5.03
987 1003 2.544685 CGCCTCATCTTCTGATCGTTT 58.455 47.619 0.00 0.00 32.10 3.60
1174 1190 3.057586 TGGGGGAAAACTTGGAAGTCTA 58.942 45.455 0.00 0.00 38.57 2.59
1175 1191 1.856920 TGGGGGAAAACTTGGAAGTCT 59.143 47.619 0.00 0.00 38.57 3.24
1176 1192 2.375014 TGGGGGAAAACTTGGAAGTC 57.625 50.000 0.00 0.00 38.57 3.01
1177 1193 3.344535 AATGGGGGAAAACTTGGAAGT 57.655 42.857 0.00 0.00 42.04 3.01
1178 1194 4.347876 AGAAAATGGGGGAAAACTTGGAAG 59.652 41.667 0.00 0.00 0.00 3.46
1180 1196 3.901222 GAGAAAATGGGGGAAAACTTGGA 59.099 43.478 0.00 0.00 0.00 3.53
1182 1198 5.775195 ACTAGAGAAAATGGGGGAAAACTTG 59.225 40.000 0.00 0.00 0.00 3.16
1184 1200 5.074515 TGACTAGAGAAAATGGGGGAAAACT 59.925 40.000 0.00 0.00 0.00 2.66
1185 1201 5.321927 TGACTAGAGAAAATGGGGGAAAAC 58.678 41.667 0.00 0.00 0.00 2.43
1186 1202 5.592587 TGACTAGAGAAAATGGGGGAAAA 57.407 39.130 0.00 0.00 0.00 2.29
1190 1206 3.372025 CCCTTGACTAGAGAAAATGGGGG 60.372 52.174 0.00 0.00 0.00 5.40
1334 1364 7.036829 TGCTGTTGCACGACTATTAAGTTATA 58.963 34.615 0.00 0.00 45.31 0.98
1335 1365 5.872617 TGCTGTTGCACGACTATTAAGTTAT 59.127 36.000 0.00 0.00 45.31 1.89
1407 1437 4.382901 GCAGGGCATCCAATTAAAATGACA 60.383 41.667 3.08 0.00 34.83 3.58
1565 1596 0.899720 TGAATAGAACCCGCGGAAGT 59.100 50.000 30.73 15.03 0.00 3.01
1585 1616 5.064325 GCTGGTAAACCCTAACATCGTAAAG 59.936 44.000 0.00 0.00 34.29 1.85
1620 1651 7.776969 ACATGCAACCAGAATTCATAGTTCTAT 59.223 33.333 8.44 2.61 34.32 1.98
1642 1673 5.824624 AGCATTAAGGTGAGTTCCATACATG 59.175 40.000 0.00 0.00 0.00 3.21
1904 1982 3.010420 GCTGGGATACAAAACTCAGACC 58.990 50.000 0.00 0.00 36.82 3.85
2065 2143 5.416952 AGGAATTAAGTGCAATCCTCACAAG 59.583 40.000 0.00 0.00 36.93 3.16
2157 2235 2.412089 CGGGTCGAAGAAACAAGCTTAG 59.588 50.000 0.00 0.00 39.69 2.18
2175 2253 0.672401 ACCAAGTTGTATGACGCGGG 60.672 55.000 12.47 0.00 0.00 6.13
2180 2258 3.740115 AGACACCACCAAGTTGTATGAC 58.260 45.455 1.45 0.00 0.00 3.06
2201 2279 3.788227 AACCAACTGCAGTGAGGATAA 57.212 42.857 33.43 0.00 0.00 1.75
2228 2306 8.712363 GCGTATGTCATAATTCAACATCTGTAT 58.288 33.333 0.00 0.00 35.38 2.29
2339 2417 7.595130 GGTAATGAGAAATGGAAAAAGTGTCAC 59.405 37.037 0.00 0.00 0.00 3.67
2473 2551 7.974504 AGAAACCTAGAAGAACCATTTGTAGA 58.025 34.615 0.00 0.00 0.00 2.59
2619 2701 7.862372 ACTCATCATACACAAAAACACATTGTC 59.138 33.333 0.00 0.00 38.90 3.18
2706 2788 4.323417 TCACGGTAAGCAAAATGATCAGT 58.677 39.130 0.09 0.00 0.00 3.41
2792 2874 7.394016 TCTAATCTTATTTGAGCAACTCCACA 58.606 34.615 0.00 0.00 0.00 4.17
2797 2879 6.037610 CGCCTTCTAATCTTATTTGAGCAACT 59.962 38.462 0.00 0.00 0.00 3.16
2812 2894 5.671493 GGCCATATATACACGCCTTCTAAT 58.329 41.667 0.00 0.00 36.65 1.73
2940 3022 6.661805 AGGAGAACCAAAAGTCAAACAAAGTA 59.338 34.615 0.00 0.00 38.94 2.24
3138 3220 0.955428 CCGCACTTGCTAGCAAAGGA 60.955 55.000 28.95 9.12 39.32 3.36
3143 3225 2.047274 GGTCCGCACTTGCTAGCA 60.047 61.111 14.93 14.93 39.32 3.49
3171 3256 2.372172 GGAGACCTGGAACTTGGAGAAA 59.628 50.000 0.00 0.00 0.00 2.52
3172 3257 1.978580 GGAGACCTGGAACTTGGAGAA 59.021 52.381 0.00 0.00 0.00 2.87
3173 3258 1.150135 AGGAGACCTGGAACTTGGAGA 59.850 52.381 0.00 0.00 29.57 3.71
3186 3271 2.440980 GCAATGGGCCAGGAGACC 60.441 66.667 13.78 0.00 36.11 3.85
3214 3299 9.729023 TTTGTGAAATTGTTACAGAACATACAG 57.271 29.630 0.00 0.00 44.96 2.74
3303 3389 9.457436 GTACTAACTTTTATTTTGGGATGGAGA 57.543 33.333 0.00 0.00 0.00 3.71
3374 3629 0.383860 GCACGCCGTAAACTTGACAC 60.384 55.000 0.00 0.00 0.00 3.67
3409 3664 8.041323 CCTGGTAATCATTAACTCACAGTAGTT 58.959 37.037 0.00 0.00 42.31 2.24
3505 3760 5.942236 TGTCGTAACTAAAGAGCCTCTAGAA 59.058 40.000 0.00 0.00 0.00 2.10
3609 3950 6.791867 TCTACAAACTGCCTACACTCATAT 57.208 37.500 0.00 0.00 0.00 1.78
3750 4091 7.891561 ACCATCGATAAAACAAGGAAAATTCA 58.108 30.769 0.00 0.00 0.00 2.57
3774 4115 3.758554 AGTGGAATGTGGAATGCAGTAAC 59.241 43.478 0.00 0.00 0.00 2.50
3821 4170 5.364778 TGAACGTAAATGGCATAGCACTAT 58.635 37.500 0.00 0.00 0.00 2.12
3924 4273 7.972301 TCATGTTCATTAATTTTGAAAGGGGT 58.028 30.769 5.40 0.00 35.03 4.95
4124 4473 2.738013 TGTCATGTGTGAGAGCTGAG 57.262 50.000 0.00 0.00 34.36 3.35
4300 4649 9.698309 CACTTAGTATCTCAATATCGTTGGATT 57.302 33.333 0.00 0.00 34.00 3.01
4308 4657 7.364200 ACTCACGCACTTAGTATCTCAATATC 58.636 38.462 0.00 0.00 0.00 1.63
4365 4714 1.067821 CGGTACTTCTCATGCTCTCCC 59.932 57.143 0.00 0.00 0.00 4.30
4386 4735 2.097825 CTTTCCATCAAGCCCTCCAAG 58.902 52.381 0.00 0.00 0.00 3.61
4738 5088 8.902540 ATGAGCAATAACGATAGGATTGTAAA 57.097 30.769 0.00 0.00 42.29 2.01
4763 5113 1.007238 AGACACCTTAGCAGCTCCCTA 59.993 52.381 0.00 0.00 0.00 3.53
4984 5335 1.014564 GTAACAGGAGACACCAGCGC 61.015 60.000 0.00 0.00 42.04 5.92
5007 5358 8.937835 TCAGATTTACATCAGGAAATCAGGATA 58.062 33.333 13.82 0.00 42.18 2.59
5015 5366 8.862325 TTTTAGCTCAGATTTACATCAGGAAA 57.138 30.769 0.00 0.00 0.00 3.13
5117 5468 4.678256 TGGGCAATGGGTATGTCTTTTAA 58.322 39.130 0.00 0.00 0.00 1.52
5119 5470 3.182887 TGGGCAATGGGTATGTCTTTT 57.817 42.857 0.00 0.00 0.00 2.27
5141 5492 3.559171 GCAAACTTCACAGACCCATCCTA 60.559 47.826 0.00 0.00 0.00 2.94
5219 5570 4.096382 GCAGGTGAGAAAACTGAAGAACAA 59.904 41.667 0.00 0.00 34.21 2.83
5231 5582 6.179756 TCATAATAGCTTTGCAGGTGAGAAA 58.820 36.000 0.00 0.00 31.45 2.52
5621 5981 6.096695 GTGCTTTTCTTTTACACCTGAACAA 58.903 36.000 0.00 0.00 0.00 2.83
5626 5986 6.198966 GTGATTGTGCTTTTCTTTTACACCTG 59.801 38.462 0.00 0.00 0.00 4.00
5651 6011 9.723447 CTCTACTAATATATGGCAGTAATCGTG 57.277 37.037 0.00 0.00 0.00 4.35
5652 6012 9.463902 ACTCTACTAATATATGGCAGTAATCGT 57.536 33.333 0.00 0.00 0.00 3.73
5714 6078 5.589050 AGAAAAGTTTAGAACTGGTGTGGAC 59.411 40.000 0.00 0.00 41.91 4.02
5833 6201 1.007849 GAAAAGAAGCGGGCGCAAA 60.008 52.632 10.83 0.00 44.88 3.68
5893 6261 2.870411 CGGTTTTCTTGTATCCCGGATC 59.130 50.000 0.73 0.00 0.00 3.36
6143 6512 2.683968 GAATGCAACAGTACGGAGTGA 58.316 47.619 10.14 0.00 45.73 3.41
6215 6842 9.573166 AAATATATCAACAGTGGCAGCTATAAA 57.427 29.630 0.00 0.00 0.00 1.40
6356 6983 3.839323 TCCTCTACCTTCCTGTGGTAA 57.161 47.619 0.00 0.00 39.29 2.85
6417 7044 3.834489 TCTCTGGGAGAGATCAATTGC 57.166 47.619 0.00 0.00 45.77 3.56
6434 7061 8.730680 ACAATTACCATGTATTCACTTGTTCTC 58.269 33.333 0.00 0.00 0.00 2.87
6496 7123 6.597832 AGAGACAGTGAGCACTACTTAATT 57.402 37.500 2.36 0.00 40.20 1.40
6664 7291 0.909623 TTGGCTGGGCTACCTACTTC 59.090 55.000 0.00 0.00 37.76 3.01
6820 7452 0.315251 CTCCTGTCTCGCTGAACACA 59.685 55.000 0.00 0.00 0.00 3.72
6822 7454 1.290324 GCTCCTGTCTCGCTGAACA 59.710 57.895 0.00 0.00 0.00 3.18
6886 7518 0.618458 GAACAGGCTGGTGTATCCCA 59.382 55.000 20.34 0.00 34.77 4.37
6892 7524 1.645402 AACAGGGAACAGGCTGGTGT 61.645 55.000 20.34 10.69 0.00 4.16
6937 7569 8.894409 AAACAAATGTAGAAAAAGCAAAAAGC 57.106 26.923 0.00 0.00 46.19 3.51
7256 7888 9.658799 TTCAACATTTTTCAAATACTTGTTCCA 57.341 25.926 0.00 0.00 33.94 3.53
7257 7889 9.914923 GTTCAACATTTTTCAAATACTTGTTCC 57.085 29.630 0.00 0.00 33.94 3.62
7585 8503 3.551846 TCTGAGCCGGTTTTTCTCTTTT 58.448 40.909 1.90 0.00 0.00 2.27
7587 8505 2.930826 TCTGAGCCGGTTTTTCTCTT 57.069 45.000 1.90 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.