Multiple sequence alignment - TraesCS2B01G250300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G250300 chr2B 100.000 7075 0 0 1 7075 259775149 259782223 0.000000e+00 13066.0
1 TraesCS2B01G250300 chr2B 95.385 260 6 3 6606 6861 192196163 192195906 6.610000e-110 409.0
2 TraesCS2B01G250300 chr2B 85.470 117 16 1 5222 5337 161669874 161669758 3.470000e-23 121.0
3 TraesCS2B01G250300 chr2A 94.252 2488 115 13 756 3231 277608026 277605555 0.000000e+00 3777.0
4 TraesCS2B01G250300 chr2A 94.193 1257 52 16 3310 4550 277605559 277604308 0.000000e+00 1897.0
5 TraesCS2B01G250300 chr2A 91.545 1301 58 28 5337 6607 277604268 277602990 0.000000e+00 1746.0
6 TraesCS2B01G250300 chr2A 88.218 662 44 23 1 652 277609805 277609168 0.000000e+00 760.0
7 TraesCS2B01G250300 chr2A 93.694 222 11 2 6856 7075 277602992 277602772 5.290000e-86 329.0
8 TraesCS2B01G250300 chr2D 93.069 1991 92 17 678 2655 205613901 205615858 0.000000e+00 2870.0
9 TraesCS2B01G250300 chr2D 93.140 1720 76 24 2900 4601 205615863 205617558 0.000000e+00 2484.0
10 TraesCS2B01G250300 chr2D 93.666 1263 55 12 5333 6583 205617558 205618807 0.000000e+00 1866.0
11 TraesCS2B01G250300 chr2D 96.396 222 5 2 6856 7075 205618808 205619028 5.220000e-96 363.0
12 TraesCS2B01G250300 chr2D 90.535 243 22 1 2651 2893 341693854 341694095 3.180000e-83 320.0
13 TraesCS2B01G250300 chr2D 90.123 243 23 1 2653 2895 78385629 78385388 1.480000e-81 315.0
14 TraesCS2B01G250300 chr2D 87.266 267 30 4 2652 2917 378729406 378729143 1.150000e-77 302.0
15 TraesCS2B01G250300 chr2D 90.196 102 10 0 5220 5321 543735203 543735304 4.450000e-27 134.0
16 TraesCS2B01G250300 chr2D 79.894 189 29 6 5138 5324 325996536 325996355 5.760000e-26 130.0
17 TraesCS2B01G250300 chrUn 95.736 727 15 2 4603 5328 36504531 36503820 0.000000e+00 1157.0
18 TraesCS2B01G250300 chrUn 95.385 260 7 3 6606 6861 67356269 67356011 6.610000e-110 409.0
19 TraesCS2B01G250300 chr6B 90.443 722 29 11 4603 5324 688857402 688858083 0.000000e+00 915.0
20 TraesCS2B01G250300 chr6B 96.094 256 5 3 6606 6857 392791905 392791651 5.110000e-111 412.0
21 TraesCS2B01G250300 chr6B 95.720 257 7 3 6606 6858 511096587 511096331 1.840000e-110 411.0
22 TraesCS2B01G250300 chr7D 85.564 665 37 23 4603 5257 54075779 54076394 5.980000e-180 641.0
23 TraesCS2B01G250300 chr1B 96.484 256 5 2 6606 6857 670436292 670436037 3.050000e-113 420.0
24 TraesCS2B01G250300 chr3B 96.094 256 5 3 6606 6857 446479618 446479872 5.110000e-111 412.0
25 TraesCS2B01G250300 chr3B 91.903 247 18 2 2648 2894 353997429 353997185 1.890000e-90 344.0
26 TraesCS2B01G250300 chr3B 78.641 206 39 4 5135 5337 316562892 316562689 1.600000e-26 132.0
27 TraesCS2B01G250300 chr3B 88.679 106 12 0 5220 5325 48441971 48442076 5.760000e-26 130.0
28 TraesCS2B01G250300 chr5B 95.720 257 6 3 6606 6858 127891566 127891821 6.610000e-110 409.0
29 TraesCS2B01G250300 chr5B 94.717 265 8 4 6606 6865 678024475 678024738 2.380000e-109 407.0
30 TraesCS2B01G250300 chr5B 94.697 264 8 4 6606 6864 389006920 389007182 8.550000e-109 405.0
31 TraesCS2B01G250300 chr5B 76.943 386 42 22 4940 5324 310358659 310358998 7.290000e-40 176.0
32 TraesCS2B01G250300 chr3D 91.498 247 19 2 2648 2894 236629046 236628802 8.790000e-89 339.0
33 TraesCS2B01G250300 chr3D 90.574 244 21 2 2652 2895 251409396 251409155 8.850000e-84 322.0
34 TraesCS2B01G250300 chr1D 90.612 245 22 1 2650 2894 378551665 378551908 2.460000e-84 324.0
35 TraesCS2B01G250300 chr1D 97.143 35 1 0 319 353 20829453 20829419 7.660000e-05 60.2
36 TraesCS2B01G250300 chr7A 90.164 244 23 1 2651 2894 459619366 459619124 4.120000e-82 316.0
37 TraesCS2B01G250300 chr6A 89.320 103 11 0 5220 5322 320145492 320145594 5.760000e-26 130.0
38 TraesCS2B01G250300 chr4A 84.375 64 9 1 302 364 616682326 616682389 2.130000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G250300 chr2B 259775149 259782223 7074 False 13066.00 13066 100.00000 1 7075 1 chr2B.!!$F1 7074
1 TraesCS2B01G250300 chr2A 277602772 277609805 7033 True 1701.80 3777 92.38040 1 7075 5 chr2A.!!$R1 7074
2 TraesCS2B01G250300 chr2D 205613901 205619028 5127 False 1895.75 2870 94.06775 678 7075 4 chr2D.!!$F3 6397
3 TraesCS2B01G250300 chrUn 36503820 36504531 711 True 1157.00 1157 95.73600 4603 5328 1 chrUn.!!$R1 725
4 TraesCS2B01G250300 chr6B 688857402 688858083 681 False 915.00 915 90.44300 4603 5324 1 chr6B.!!$F1 721
5 TraesCS2B01G250300 chr7D 54075779 54076394 615 False 641.00 641 85.56400 4603 5257 1 chr7D.!!$F1 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
642 652 0.179000 ATGGGCGAAGAACCTGCTAG 59.821 55.000 0.00 0.0 0.00 3.42 F
644 654 0.249398 GGGCGAAGAACCTGCTAGAA 59.751 55.000 0.00 0.0 0.00 2.10 F
1170 2254 0.321741 TTTTAATCCCCGCGCAGTCA 60.322 50.000 8.75 0.0 0.00 3.41 F
1867 2962 1.006494 GTTGCAAAAGAAAACACGGCG 60.006 47.619 4.80 4.8 0.00 6.46 F
1885 2980 1.078759 CGTCTGACTCGGATGTTGGC 61.079 60.000 6.21 0.0 0.00 4.52 F
2776 3878 2.426522 TCATTGGAAGCTCCTTTCACG 58.573 47.619 0.00 0.0 37.46 4.35 F
2794 3896 3.119884 TCACGTACGAATGTGACGGTATT 60.120 43.478 24.41 0.0 44.81 1.89 F
4533 5654 2.440539 TTCTCAGCTGAAGGTTCGTC 57.559 50.000 18.85 0.0 0.00 4.20 F
5708 6845 0.731514 CAATGGTTGCTGAAGCTGCG 60.732 55.000 3.61 0.0 42.66 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1961 3056 0.391597 TCAACTCACCCTCCGAACAC 59.608 55.000 0.00 0.0 0.00 3.32 R
2023 3118 1.473258 TGGAGCACAACAGCAGTTTT 58.527 45.000 0.00 0.0 35.28 2.43 R
2931 4033 2.607187 AGTAAAGTTGAGCGGTCATCG 58.393 47.619 19.37 0.0 42.76 3.84 R
3643 4750 2.248280 ACACACCAATCACAACGCTA 57.752 45.000 0.00 0.0 0.00 4.26 R
3646 4753 2.961522 GGTACACACCAATCACAACG 57.038 50.000 0.00 0.0 45.04 4.10 R
4534 5655 4.078922 AGAGAGAGAGAGAGAGAGAGAGGA 60.079 50.000 0.00 0.0 0.00 3.71 R
4535 5656 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.0 0.00 3.69 R
5924 7082 1.280133 TCATCCTCTGCAACCCTTCTG 59.720 52.381 0.00 0.0 0.00 3.02 R
6828 7991 0.032615 TTGGTTCCCAGCCACAGTTT 60.033 50.000 0.00 0.0 35.46 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 78 5.303078 AGGCAAAGACGACATCTAGTATCAT 59.697 40.000 0.00 0.00 36.27 2.45
151 154 5.265191 TGAGCTAGAGTGTAGAAACTCCAT 58.735 41.667 0.00 0.00 46.51 3.41
156 159 5.808366 AGAGTGTAGAAACTCCATGTCAA 57.192 39.130 0.84 0.00 46.51 3.18
160 163 6.402222 AGTGTAGAAACTCCATGTCAATCTC 58.598 40.000 0.00 0.00 0.00 2.75
171 174 1.134401 TGTCAATCTCGATTGGGCTCC 60.134 52.381 16.99 4.42 46.08 4.70
176 179 2.103153 TCTCGATTGGGCTCCCTATT 57.897 50.000 6.50 0.00 36.94 1.73
204 207 4.148696 GTCATTGCATTTCTTTCGTGTTGG 59.851 41.667 0.00 0.00 0.00 3.77
210 213 4.537015 CATTTCTTTCGTGTTGGTTCTCC 58.463 43.478 0.00 0.00 0.00 3.71
213 216 3.463944 TCTTTCGTGTTGGTTCTCCTTC 58.536 45.455 0.00 0.00 34.23 3.46
273 277 9.699703 TTTATTTGTAAAAGGTAGATTGGTTGC 57.300 29.630 0.00 0.00 0.00 4.17
333 337 9.672086 TTTCACGTATTTAAAAAGATGTTCAGG 57.328 29.630 0.00 0.00 27.66 3.86
334 338 8.610248 TCACGTATTTAAAAAGATGTTCAGGA 57.390 30.769 0.00 0.00 27.66 3.86
408 412 9.651913 AATGTTCATGGGTTTATAAATTGTCAC 57.348 29.630 0.31 0.00 0.00 3.67
599 609 1.981256 ATGAAACCGGCAAGACAGTT 58.019 45.000 0.00 0.00 0.00 3.16
611 621 3.623060 GCAAGACAGTTGAGAAACACAGA 59.377 43.478 0.00 0.00 0.00 3.41
635 645 3.660501 AAAGGAAAATGGGCGAAGAAC 57.339 42.857 0.00 0.00 0.00 3.01
636 646 1.545841 AGGAAAATGGGCGAAGAACC 58.454 50.000 0.00 0.00 0.00 3.62
637 647 1.075536 AGGAAAATGGGCGAAGAACCT 59.924 47.619 0.00 0.00 0.00 3.50
638 648 1.202348 GGAAAATGGGCGAAGAACCTG 59.798 52.381 0.00 0.00 0.00 4.00
639 649 0.603065 AAAATGGGCGAAGAACCTGC 59.397 50.000 0.00 0.00 0.00 4.85
641 651 0.618458 AATGGGCGAAGAACCTGCTA 59.382 50.000 0.00 0.00 0.00 3.49
642 652 0.179000 ATGGGCGAAGAACCTGCTAG 59.821 55.000 0.00 0.00 0.00 3.42
643 653 0.902984 TGGGCGAAGAACCTGCTAGA 60.903 55.000 0.00 0.00 0.00 2.43
644 654 0.249398 GGGCGAAGAACCTGCTAGAA 59.751 55.000 0.00 0.00 0.00 2.10
645 655 1.360820 GGCGAAGAACCTGCTAGAAC 58.639 55.000 0.00 0.00 0.00 3.01
646 656 0.992802 GCGAAGAACCTGCTAGAACG 59.007 55.000 0.00 0.00 0.00 3.95
647 657 1.669211 GCGAAGAACCTGCTAGAACGT 60.669 52.381 0.00 0.00 0.00 3.99
648 658 2.673833 CGAAGAACCTGCTAGAACGTT 58.326 47.619 0.00 0.00 0.00 3.99
649 659 3.829948 CGAAGAACCTGCTAGAACGTTA 58.170 45.455 0.00 0.00 0.00 3.18
650 660 4.421948 CGAAGAACCTGCTAGAACGTTAT 58.578 43.478 0.00 0.00 0.00 1.89
651 661 4.499758 CGAAGAACCTGCTAGAACGTTATC 59.500 45.833 0.00 0.00 0.00 1.75
652 662 5.652518 GAAGAACCTGCTAGAACGTTATCT 58.347 41.667 0.00 0.00 0.00 1.98
653 663 5.662674 AGAACCTGCTAGAACGTTATCTT 57.337 39.130 0.00 0.00 0.00 2.40
654 664 6.038997 AGAACCTGCTAGAACGTTATCTTT 57.961 37.500 0.00 0.00 0.00 2.52
655 665 6.465084 AGAACCTGCTAGAACGTTATCTTTT 58.535 36.000 0.00 0.00 0.00 2.27
656 666 6.935208 AGAACCTGCTAGAACGTTATCTTTTT 59.065 34.615 0.00 0.00 0.00 1.94
678 688 6.463995 TTTTTGAACACATGCTAGAAGGTT 57.536 33.333 0.00 0.00 0.00 3.50
679 689 5.437289 TTTGAACACATGCTAGAAGGTTG 57.563 39.130 0.00 0.00 0.00 3.77
707 717 3.695606 GCTCTGGCGGTGACAGGA 61.696 66.667 0.00 0.00 39.54 3.86
725 735 0.976073 GAGGCAGGCCCAGTACTGTA 60.976 60.000 21.18 0.00 37.07 2.74
732 742 1.838077 GGCCCAGTACTGTACAGGATT 59.162 52.381 25.61 12.81 37.52 3.01
838 1916 0.527565 CATTCAGGCTTTTCCACGGG 59.472 55.000 0.00 0.00 37.29 5.28
839 1917 1.250840 ATTCAGGCTTTTCCACGGGC 61.251 55.000 0.00 0.00 37.29 6.13
840 1918 3.737172 CAGGCTTTTCCACGGGCG 61.737 66.667 0.00 0.00 37.29 6.13
882 1960 3.710722 CCGGCCCAGAGCAGACTT 61.711 66.667 0.00 0.00 46.50 3.01
925 2003 4.022935 CCCCTAAAACCCTAAAAACACGAC 60.023 45.833 0.00 0.00 0.00 4.34
951 2029 1.221909 TACTCTGCCTCTCCTCCCCA 61.222 60.000 0.00 0.00 0.00 4.96
997 2081 0.898320 CGGAGAGAGAAGCCAAGGAA 59.102 55.000 0.00 0.00 0.00 3.36
1023 2107 1.810030 GCGGATCACTTCGGTGGAC 60.810 63.158 0.00 0.00 45.34 4.02
1059 2143 4.457496 CTCCGCGCCATCACCACT 62.457 66.667 0.00 0.00 0.00 4.00
1109 2193 2.570181 CTTACCCGACTTCGCCGT 59.430 61.111 0.00 0.00 38.18 5.68
1112 2196 1.526575 TTACCCGACTTCGCCGTCTT 61.527 55.000 0.00 0.00 38.18 3.01
1161 2245 3.639672 TCCTTCTCCGTTTTAATCCCC 57.360 47.619 0.00 0.00 0.00 4.81
1170 2254 0.321741 TTTTAATCCCCGCGCAGTCA 60.322 50.000 8.75 0.00 0.00 3.41
1298 2382 1.757340 CCCCGTCAGTCCCCTCTAC 60.757 68.421 0.00 0.00 0.00 2.59
1366 2456 7.148672 GCTCATTCCTATAATCACGATTGTCTG 60.149 40.741 2.48 0.00 32.50 3.51
1377 2467 2.043411 CGATTGTCTGTTTTGTTGCGG 58.957 47.619 0.00 0.00 0.00 5.69
1448 2538 1.065564 GCTGCTTCTCAGAGTTGGGAT 60.066 52.381 0.00 0.00 45.72 3.85
1498 2588 7.342284 TGGTTGTTAATTCCAAAGGTTTCTGTA 59.658 33.333 0.00 0.00 0.00 2.74
1690 2780 9.938280 TTTCCCCATAATAGATATCTTACAACG 57.062 33.333 11.25 0.00 0.00 4.10
1717 2812 7.808381 CGTCTACACCTGTATTAAGTATCCATG 59.192 40.741 0.00 0.00 0.00 3.66
1786 2881 9.191995 GCCAAATTGTATTTACATATAGTTGCC 57.808 33.333 0.00 0.00 35.89 4.52
1867 2962 1.006494 GTTGCAAAAGAAAACACGGCG 60.006 47.619 4.80 4.80 0.00 6.46
1885 2980 1.078759 CGTCTGACTCGGATGTTGGC 61.079 60.000 6.21 0.00 0.00 4.52
1954 3049 3.159213 TCTGTGGATGCTGGTGAAAAT 57.841 42.857 0.00 0.00 0.00 1.82
1961 3056 4.142116 TGGATGCTGGTGAAAATTATGCAG 60.142 41.667 0.00 0.00 32.42 4.41
2004 3099 8.094548 TGACTATAACCTTTAGCATGCGATTAT 58.905 33.333 13.01 10.31 0.00 1.28
2021 3116 9.658799 ATGCGATTATCTAATACTGTATGCTTT 57.341 29.630 0.22 0.00 0.00 3.51
2036 3131 6.568869 TGTATGCTTTAAAAACTGCTGTTGT 58.431 32.000 9.95 0.93 36.39 3.32
2040 3135 4.026558 GCTTTAAAAACTGCTGTTGTGCTC 60.027 41.667 9.95 0.00 36.39 4.26
2053 3148 5.643379 TGTTGTGCTCCATTCCTTTTATC 57.357 39.130 0.00 0.00 0.00 1.75
2359 3458 4.335315 TGCAAGGATGATCACCGTAAAATC 59.665 41.667 0.00 0.00 0.00 2.17
2469 3569 8.891671 ATTGCTCAATGTTTGTGTTAGAATTT 57.108 26.923 0.00 0.00 0.00 1.82
2471 3571 9.462174 TTGCTCAATGTTTGTGTTAGAATTTAG 57.538 29.630 0.00 0.00 0.00 1.85
2542 3644 6.778069 TGGGGTTTTGTTATGATGTCTGTTAA 59.222 34.615 0.00 0.00 0.00 2.01
2556 3658 6.665992 TGTCTGTTAAATCTGTGTAGTCCT 57.334 37.500 0.00 0.00 0.00 3.85
2567 3669 6.002653 TCTGTGTAGTCCTCTCATAGCTTA 57.997 41.667 0.00 0.00 0.00 3.09
2630 3732 8.512138 GTTTCTACTTTCTTTTATGCTAGGCAA 58.488 33.333 0.00 0.00 43.62 4.52
2673 3775 6.938470 TGCTACTCCCTCCATCCATATATAT 58.062 40.000 0.00 0.00 0.00 0.86
2685 3787 7.684186 TCCATCCATATATATAGGGCCTAATGG 59.316 40.741 25.71 25.71 36.75 3.16
2686 3788 7.462328 CCATCCATATATATAGGGCCTAATGGT 59.538 40.741 28.29 18.51 33.60 3.55
2687 3789 8.894592 CATCCATATATATAGGGCCTAATGGTT 58.105 37.037 28.29 21.78 34.36 3.67
2709 3811 3.691049 TTTTTGAGACTGTCTTTGGCG 57.309 42.857 12.27 0.00 0.00 5.69
2712 3814 2.839486 TGAGACTGTCTTTGGCGATT 57.161 45.000 12.27 0.00 0.00 3.34
2724 3826 8.450578 TGTCTTTGGCGATTGATAAGATTAAT 57.549 30.769 0.00 0.00 0.00 1.40
2776 3878 2.426522 TCATTGGAAGCTCCTTTCACG 58.573 47.619 0.00 0.00 37.46 4.35
2794 3896 3.119884 TCACGTACGAATGTGACGGTATT 60.120 43.478 24.41 0.00 44.81 1.89
2818 3920 7.686438 TCTTTGTGTAACTTGCATGTCATAT 57.314 32.000 5.61 0.00 38.04 1.78
2873 3975 3.626930 TGAAAAACGCATTAGGCCCTAT 58.373 40.909 0.00 0.00 40.31 2.57
2874 3976 4.783055 TGAAAAACGCATTAGGCCCTATA 58.217 39.130 0.00 0.00 40.31 1.31
2898 4000 3.730059 ACATGGATAGAGGGAGTAGGACT 59.270 47.826 0.00 0.00 0.00 3.85
2931 4033 8.763049 TCTGTAATATATTATGCTGCACTGAC 57.237 34.615 3.57 0.00 0.00 3.51
2962 4065 6.097356 CGCTCAACTTTACTACCACTAATGA 58.903 40.000 0.00 0.00 0.00 2.57
3146 4249 5.352569 CCTTTGACATGAGAACAGGTATGAC 59.647 44.000 0.00 0.00 41.15 3.06
3180 4283 4.458989 TGTGCAGTATCTTTCAATGGAACC 59.541 41.667 0.00 0.00 31.35 3.62
3250 4353 8.693625 AGCTTATATTCAGTTTCGGTAACTAGT 58.306 33.333 0.00 0.00 45.29 2.57
3251 4354 9.310716 GCTTATATTCAGTTTCGGTAACTAGTT 57.689 33.333 13.68 13.68 45.29 2.24
3256 4359 8.617290 ATTCAGTTTCGGTAACTAGTTTTGAT 57.383 30.769 14.49 0.00 45.29 2.57
3286 4389 3.816523 GGTTTGAATTTCGAGGTACACCA 59.183 43.478 0.38 0.00 38.89 4.17
3287 4390 4.319984 GGTTTGAATTTCGAGGTACACCAC 60.320 45.833 0.38 0.00 38.89 4.16
3454 4560 4.640647 TCGACAGATAGTTAGTGACATGCT 59.359 41.667 0.00 0.00 0.00 3.79
3525 4632 8.851960 TCTACATGTTGAGTTCGATGTATAAC 57.148 34.615 2.30 0.00 32.32 1.89
3550 4657 3.520290 AACAGATCGGAGATTGCGTAA 57.480 42.857 0.00 0.00 45.12 3.18
3626 4733 3.730215 ACCCAAGGTACAATGTATGCA 57.270 42.857 0.00 0.00 32.11 3.96
3852 4960 3.450457 TCCCTCAATTTTGTTGTGCACTT 59.550 39.130 19.41 0.00 0.00 3.16
3970 5078 3.287222 GGATACAAATACAAGGCAGCCA 58.713 45.455 15.80 0.00 0.00 4.75
3992 5100 5.390567 CCACTTTCTGCGGTATGTCTAAAAC 60.391 44.000 0.00 0.00 0.00 2.43
4024 5132 6.643770 CACAGCATTCAAATTAAGCTTGAAGT 59.356 34.615 9.86 9.17 43.89 3.01
4043 5164 7.697352 TGAAGTTTGTTGTTAATTGATGCTG 57.303 32.000 0.00 0.00 0.00 4.41
4044 5165 7.264221 TGAAGTTTGTTGTTAATTGATGCTGT 58.736 30.769 0.00 0.00 0.00 4.40
4091 5212 4.933505 TTTCTGGTGCATTTTGACATGA 57.066 36.364 0.00 0.00 0.00 3.07
4182 5303 9.886132 TGACTTAATCTTGGGTTACTCTTTATC 57.114 33.333 0.00 0.00 0.00 1.75
4200 5321 8.101309 TCTTTATCACTCCCTCCATATCAAAA 57.899 34.615 0.00 0.00 0.00 2.44
4210 5331 8.280258 TCCCTCCATATCAAAATAGAAGATGT 57.720 34.615 0.00 0.00 0.00 3.06
4314 5435 6.164408 TGAGTGTGCAAGTTCATTTATACG 57.836 37.500 0.00 0.00 0.00 3.06
4316 5437 6.128661 TGAGTGTGCAAGTTCATTTATACGTC 60.129 38.462 0.00 0.00 0.00 4.34
4317 5438 5.699001 AGTGTGCAAGTTCATTTATACGTCA 59.301 36.000 0.00 0.00 0.00 4.35
4331 5452 8.583765 CATTTATACGTCACGGTGTATATGATG 58.416 37.037 0.35 7.16 34.48 3.07
4359 5480 7.974675 TGATTTTTCGTTTCTATCTTGGCTAG 58.025 34.615 0.00 0.00 0.00 3.42
4361 5482 4.737855 TTCGTTTCTATCTTGGCTAGCT 57.262 40.909 15.72 0.00 0.00 3.32
4533 5654 2.440539 TTCTCAGCTGAAGGTTCGTC 57.559 50.000 18.85 0.00 0.00 4.20
4534 5655 1.621992 TCTCAGCTGAAGGTTCGTCT 58.378 50.000 18.85 0.00 0.00 4.18
4535 5656 1.542030 TCTCAGCTGAAGGTTCGTCTC 59.458 52.381 18.85 0.00 0.00 3.36
4586 5707 5.258051 TGCGGGGAGTTTCTTATGTATTTT 58.742 37.500 0.00 0.00 0.00 1.82
4617 5738 8.830915 AGCTATTCTGTACTAGTATATGGCAT 57.169 34.615 5.75 4.88 0.00 4.40
4801 5924 7.173907 ACTTTCCTTGTGTTTGTGATCTGATAG 59.826 37.037 0.00 0.00 0.00 2.08
4978 6106 1.623811 GAAGTACTTGCCTGGTCCTGA 59.376 52.381 14.14 0.00 0.00 3.86
5044 6172 0.980231 AGCACTCTTAGGGGAGCCTG 60.980 60.000 0.00 0.00 36.87 4.85
5132 6260 4.320456 CACGGTGGCAGTCTGGCT 62.320 66.667 25.17 4.05 44.10 4.75
5135 6263 3.958860 GGTGGCAGTCTGGCTGGT 61.959 66.667 25.17 0.00 45.14 4.00
5136 6264 2.670934 GTGGCAGTCTGGCTGGTG 60.671 66.667 25.17 0.00 45.14 4.17
5137 6265 3.957586 TGGCAGTCTGGCTGGTGG 61.958 66.667 25.17 0.00 45.14 4.61
5139 6267 4.648626 GCAGTCTGGCTGGTGGCA 62.649 66.667 11.76 0.00 45.14 4.92
5145 6273 3.957586 TGGCTGGTGGCAGTCTGG 61.958 66.667 1.14 0.00 44.10 3.86
5188 6320 0.745845 GAATCCATGCACCGTCAGCT 60.746 55.000 0.00 0.00 0.00 4.24
5215 6347 6.380095 AGATTAGTCTATCCGACAGTCAAC 57.620 41.667 0.41 0.00 45.32 3.18
5263 6395 1.069978 TCAATTGAGTGTGAGCCGTCA 59.930 47.619 3.38 0.00 0.00 4.35
5359 6491 4.946784 ATATGCTCTGTTTTCCGTTGTC 57.053 40.909 0.00 0.00 0.00 3.18
5395 6527 1.608055 TGTGAGAGTGGCCATTGTTG 58.392 50.000 9.72 0.00 0.00 3.33
5398 6530 1.955778 TGAGAGTGGCCATTGTTGTTG 59.044 47.619 9.72 0.00 0.00 3.33
5424 6557 8.206325 ACATTCATGTCATCTCAAATAGTGAC 57.794 34.615 0.00 0.00 35.87 3.67
5458 6593 4.137543 CAAAGTGCTTCCTTTAGGACTGT 58.862 43.478 0.00 0.00 44.75 3.55
5460 6595 4.538746 AGTGCTTCCTTTAGGACTGTAC 57.461 45.455 0.00 4.83 43.98 2.90
5461 6596 3.056749 AGTGCTTCCTTTAGGACTGTACG 60.057 47.826 0.00 0.00 43.98 3.67
5462 6597 2.232941 TGCTTCCTTTAGGACTGTACGG 59.767 50.000 0.00 0.00 45.39 4.02
5463 6598 2.494870 GCTTCCTTTAGGACTGTACGGA 59.505 50.000 9.17 0.00 45.39 4.69
5464 6599 3.675502 GCTTCCTTTAGGACTGTACGGAC 60.676 52.174 9.17 1.43 45.39 4.79
5465 6600 3.446442 TCCTTTAGGACTGTACGGACT 57.554 47.619 9.17 8.66 39.78 3.85
5466 6601 3.087031 TCCTTTAGGACTGTACGGACTG 58.913 50.000 9.17 2.65 39.78 3.51
5467 6602 2.824341 CCTTTAGGACTGTACGGACTGT 59.176 50.000 10.45 10.45 40.16 3.55
5468 6603 4.012374 CCTTTAGGACTGTACGGACTGTA 58.988 47.826 10.64 0.00 37.82 2.74
5469 6604 4.142513 CCTTTAGGACTGTACGGACTGTAC 60.143 50.000 11.97 11.97 45.01 2.90
5501 6636 8.637099 TGACTTGTTAAATTTCATTGGATGTGA 58.363 29.630 0.00 0.00 0.00 3.58
5600 6737 3.491267 GGCGTACATCTTAACTGCATCTC 59.509 47.826 0.00 0.00 0.00 2.75
5679 6816 3.840666 TGAGGAGACTAAATCCAAGCAGT 59.159 43.478 0.00 0.00 44.43 4.40
5696 6833 4.660168 AGCAGTCAGATTCTTCAATGGTT 58.340 39.130 0.00 0.00 0.00 3.67
5708 6845 0.731514 CAATGGTTGCTGAAGCTGCG 60.732 55.000 3.61 0.00 42.66 5.18
5723 6860 1.160137 CTGCGGTCAGAAGGGAAAAG 58.840 55.000 0.00 0.00 42.95 2.27
5841 6999 9.847706 AGAAGAAAAAGAAGAAGAAAACTGTTC 57.152 29.630 0.00 0.00 0.00 3.18
5850 7008 6.688073 AGAAGAAAACTGTTCCAGAGGATA 57.312 37.500 0.00 0.00 35.18 2.59
5865 7023 7.405292 TCCAGAGGATAATGAAGAAACACAAT 58.595 34.615 0.00 0.00 0.00 2.71
5924 7082 8.126074 GTCAGAAAGGAGAAGAAGAAAAAGAAC 58.874 37.037 0.00 0.00 0.00 3.01
6040 7201 0.244721 GGCGAAAGAAGCAAAGGCAT 59.755 50.000 0.00 0.00 44.61 4.40
6053 7214 5.430886 AGCAAAGGCATGAAAAAGAAAAGT 58.569 33.333 0.00 0.00 44.61 2.66
6102 7263 7.394359 ACATTTGGTGTGCTAGAATTATTGACT 59.606 33.333 0.00 0.00 40.28 3.41
6270 7431 8.682128 TGAAAATATTATCAAACTTGAACGGC 57.318 30.769 0.00 0.00 41.13 5.68
6358 7521 2.829720 TGGTCTAGTTTAGCGTGGACAT 59.170 45.455 0.00 0.00 0.00 3.06
6453 7616 3.827008 TGTGTAGGATCTCTGCCAATC 57.173 47.619 0.00 0.00 0.00 2.67
6583 7746 9.612066 AGTTGACCAAAATTGATTTTTACACAT 57.388 25.926 0.00 0.00 37.86 3.21
6586 7749 9.703892 TGACCAAAATTGATTTTTACACATAGG 57.296 29.630 0.00 0.00 37.86 2.57
6604 7767 5.543020 ACATAGGTCCCTTAAGGCTATACAC 59.457 44.000 16.70 4.95 34.51 2.90
6605 7768 4.282292 AGGTCCCTTAAGGCTATACACT 57.718 45.455 16.70 3.94 34.51 3.55
6606 7769 4.632292 AGGTCCCTTAAGGCTATACACTT 58.368 43.478 16.70 0.00 34.51 3.16
6607 7770 5.037598 AGGTCCCTTAAGGCTATACACTTT 58.962 41.667 16.70 0.00 34.51 2.66
6608 7771 5.104485 AGGTCCCTTAAGGCTATACACTTTG 60.104 44.000 16.70 0.00 34.51 2.77
6609 7772 5.123936 GTCCCTTAAGGCTATACACTTTGG 58.876 45.833 16.70 0.00 34.51 3.28
6610 7773 4.786454 TCCCTTAAGGCTATACACTTTGGT 59.214 41.667 16.70 0.00 34.51 3.67
6611 7774 5.252164 TCCCTTAAGGCTATACACTTTGGTT 59.748 40.000 16.70 0.00 34.51 3.67
6612 7775 5.357032 CCCTTAAGGCTATACACTTTGGTTG 59.643 44.000 16.70 0.00 0.00 3.77
6613 7776 5.357032 CCTTAAGGCTATACACTTTGGTTGG 59.643 44.000 9.00 0.00 0.00 3.77
6614 7777 4.650972 AAGGCTATACACTTTGGTTGGA 57.349 40.909 0.00 0.00 0.00 3.53
6615 7778 4.222124 AGGCTATACACTTTGGTTGGAG 57.778 45.455 0.00 0.00 0.00 3.86
6616 7779 3.844211 AGGCTATACACTTTGGTTGGAGA 59.156 43.478 0.00 0.00 0.00 3.71
6617 7780 3.939592 GGCTATACACTTTGGTTGGAGAC 59.060 47.826 0.00 0.00 0.00 3.36
6618 7781 4.323562 GGCTATACACTTTGGTTGGAGACT 60.324 45.833 0.00 0.00 0.00 3.24
6619 7782 4.631813 GCTATACACTTTGGTTGGAGACTG 59.368 45.833 0.00 0.00 0.00 3.51
6620 7783 4.706842 ATACACTTTGGTTGGAGACTGT 57.293 40.909 0.00 0.00 0.00 3.55
6621 7784 2.643551 ACACTTTGGTTGGAGACTGTG 58.356 47.619 0.00 0.00 0.00 3.66
6622 7785 1.949525 CACTTTGGTTGGAGACTGTGG 59.050 52.381 0.00 0.00 0.00 4.17
6623 7786 0.954452 CTTTGGTTGGAGACTGTGGC 59.046 55.000 0.00 0.00 0.00 5.01
6624 7787 0.467290 TTTGGTTGGAGACTGTGGCC 60.467 55.000 0.00 0.00 0.00 5.36
6625 7788 1.640593 TTGGTTGGAGACTGTGGCCA 61.641 55.000 0.00 0.00 0.00 5.36
6626 7789 1.150536 GGTTGGAGACTGTGGCCAA 59.849 57.895 7.24 6.81 39.23 4.52
6627 7790 0.890996 GGTTGGAGACTGTGGCCAAG 60.891 60.000 7.24 10.35 41.93 3.61
6628 7791 1.228245 TTGGAGACTGTGGCCAAGC 60.228 57.895 7.24 0.00 36.80 4.01
6645 7808 4.819783 CCAAAGTGTGGCTAGCCA 57.180 55.556 32.88 32.88 41.72 4.75
6655 7818 2.401583 TGGCTAGCCACACAAGTATG 57.598 50.000 32.88 0.00 41.89 2.39
6656 7819 1.065491 TGGCTAGCCACACAAGTATGG 60.065 52.381 32.88 0.00 41.89 2.74
6662 7825 0.527565 CCACACAAGTATGGCAAGCC 59.472 55.000 3.61 3.61 0.00 4.35
6671 7834 3.524014 TGGCAAGCCACACAAGTG 58.476 55.556 10.24 0.00 41.89 3.16
6672 7835 1.379710 TGGCAAGCCACACAAGTGT 60.380 52.632 10.24 0.00 44.39 3.55
6686 7849 4.549458 CACAAGTGTGGCTAAGAAATTGG 58.451 43.478 3.39 0.00 42.10 3.16
6687 7850 4.278170 CACAAGTGTGGCTAAGAAATTGGA 59.722 41.667 3.39 0.00 42.10 3.53
6688 7851 4.278419 ACAAGTGTGGCTAAGAAATTGGAC 59.722 41.667 0.00 0.00 0.00 4.02
6689 7852 3.074412 AGTGTGGCTAAGAAATTGGACG 58.926 45.455 0.00 0.00 0.00 4.79
6690 7853 1.810151 TGTGGCTAAGAAATTGGACGC 59.190 47.619 0.00 0.00 0.00 5.19
6691 7854 1.132453 GTGGCTAAGAAATTGGACGCC 59.868 52.381 0.00 0.00 36.64 5.68
6692 7855 1.271652 TGGCTAAGAAATTGGACGCCA 60.272 47.619 0.00 0.00 43.12 5.69
6702 7865 2.315925 TTGGACGCCAAATTTTGCAA 57.684 40.000 13.99 0.00 40.92 4.08
6703 7866 2.315925 TGGACGCCAAATTTTGCAAA 57.684 40.000 8.05 8.05 0.00 3.68
6704 7867 2.632377 TGGACGCCAAATTTTGCAAAA 58.368 38.095 25.76 25.76 0.00 2.44
6705 7868 2.611292 TGGACGCCAAATTTTGCAAAAG 59.389 40.909 27.08 15.82 0.00 2.27
6706 7869 2.611751 GGACGCCAAATTTTGCAAAAGT 59.388 40.909 27.08 23.03 0.00 2.66
6707 7870 3.064682 GGACGCCAAATTTTGCAAAAGTT 59.935 39.130 26.87 26.87 36.73 2.66
6739 7902 2.934083 GTCTCTTTGACAGGTGGGC 58.066 57.895 0.00 0.00 44.73 5.36
6740 7903 0.606673 GTCTCTTTGACAGGTGGGCC 60.607 60.000 0.00 0.00 44.73 5.80
6741 7904 1.059584 TCTCTTTGACAGGTGGGCCA 61.060 55.000 0.00 0.00 37.19 5.36
6742 7905 0.038744 CTCTTTGACAGGTGGGCCAT 59.961 55.000 10.70 0.00 37.19 4.40
6743 7906 1.281867 CTCTTTGACAGGTGGGCCATA 59.718 52.381 10.70 0.00 37.19 2.74
6744 7907 1.281867 TCTTTGACAGGTGGGCCATAG 59.718 52.381 10.70 5.28 37.19 2.23
6745 7908 0.331278 TTTGACAGGTGGGCCATAGG 59.669 55.000 10.70 4.43 37.19 2.57
6746 7909 1.570857 TTGACAGGTGGGCCATAGGG 61.571 60.000 10.70 2.36 37.19 3.53
6747 7910 2.696125 ACAGGTGGGCCATAGGGG 60.696 66.667 10.70 0.33 40.85 4.79
6760 7923 2.958355 CCATAGGGGCAATAAAGTGTGG 59.042 50.000 0.00 0.00 0.00 4.17
6761 7924 2.137810 TAGGGGCAATAAAGTGTGGC 57.862 50.000 0.00 0.00 39.48 5.01
6762 7925 0.114168 AGGGGCAATAAAGTGTGGCA 59.886 50.000 0.00 0.00 41.85 4.92
6763 7926 0.972883 GGGGCAATAAAGTGTGGCAA 59.027 50.000 0.00 0.00 41.85 4.52
6764 7927 1.066929 GGGGCAATAAAGTGTGGCAAG 60.067 52.381 0.00 0.00 41.85 4.01
6765 7928 1.672737 GGGCAATAAAGTGTGGCAAGC 60.673 52.381 0.00 0.00 41.85 4.01
6766 7929 1.672737 GGCAATAAAGTGTGGCAAGCC 60.673 52.381 3.61 3.61 39.93 4.35
6767 7930 1.000731 GCAATAAAGTGTGGCAAGCCA 59.999 47.619 10.24 10.24 45.02 4.75
6784 7947 2.393271 CCAAAGTGTGGCAAAAACCA 57.607 45.000 0.00 0.00 41.72 3.67
6785 7948 2.704572 CCAAAGTGTGGCAAAAACCAA 58.295 42.857 0.00 0.00 42.70 3.67
6786 7949 3.077359 CCAAAGTGTGGCAAAAACCAAA 58.923 40.909 0.00 0.00 42.70 3.28
6787 7950 3.120025 CCAAAGTGTGGCAAAAACCAAAC 60.120 43.478 0.00 0.00 46.81 2.93
6790 7953 2.417719 GTGTGGCAAAAACCAAACACA 58.582 42.857 0.00 0.00 45.87 3.72
6791 7954 3.006247 GTGTGGCAAAAACCAAACACAT 58.994 40.909 0.00 0.00 45.87 3.21
6792 7955 3.005554 TGTGGCAAAAACCAAACACATG 58.994 40.909 0.00 0.00 42.70 3.21
6793 7956 2.012673 TGGCAAAAACCAAACACATGC 58.987 42.857 0.00 0.00 36.55 4.06
6794 7957 2.287769 GGCAAAAACCAAACACATGCT 58.712 42.857 0.00 0.00 33.09 3.79
6795 7958 2.682352 GGCAAAAACCAAACACATGCTT 59.318 40.909 0.00 0.00 33.09 3.91
6796 7959 3.487209 GGCAAAAACCAAACACATGCTTG 60.487 43.478 0.00 0.00 33.09 4.01
6797 7960 3.487209 GCAAAAACCAAACACATGCTTGG 60.487 43.478 16.44 16.44 44.56 3.61
6798 7961 1.952193 AAACCAAACACATGCTTGGC 58.048 45.000 17.48 0.00 43.23 4.52
6799 7962 0.829333 AACCAAACACATGCTTGGCA 59.171 45.000 17.48 0.00 43.23 4.92
6800 7963 0.829333 ACCAAACACATGCTTGGCAA 59.171 45.000 17.48 0.00 43.23 4.52
6801 7964 1.209019 ACCAAACACATGCTTGGCAAA 59.791 42.857 17.48 0.00 43.23 3.68
6802 7965 1.598601 CCAAACACATGCTTGGCAAAC 59.401 47.619 0.00 0.00 43.62 2.93
6803 7966 2.553086 CAAACACATGCTTGGCAAACT 58.447 42.857 0.00 0.00 43.62 2.66
6804 7967 2.228138 AACACATGCTTGGCAAACTG 57.772 45.000 0.00 1.65 43.62 3.16
6805 7968 1.113788 ACACATGCTTGGCAAACTGT 58.886 45.000 0.00 2.31 43.62 3.55
6806 7969 1.202440 ACACATGCTTGGCAAACTGTG 60.202 47.619 23.75 23.75 46.18 3.66
6807 7970 0.390124 ACATGCTTGGCAAACTGTGG 59.610 50.000 0.00 0.00 43.62 4.17
6814 7977 2.813901 GCAAACTGTGGCTGCCAA 59.186 55.556 25.23 12.76 34.18 4.52
6815 7978 1.143620 GCAAACTGTGGCTGCCAAA 59.856 52.632 25.23 18.40 34.18 3.28
6816 7979 0.249996 GCAAACTGTGGCTGCCAAAT 60.250 50.000 25.23 8.96 34.18 2.32
6817 7980 1.811176 GCAAACTGTGGCTGCCAAATT 60.811 47.619 25.23 14.80 34.18 1.82
6818 7981 2.563702 CAAACTGTGGCTGCCAAATTT 58.436 42.857 25.23 19.65 34.18 1.82
6819 7982 2.944349 CAAACTGTGGCTGCCAAATTTT 59.056 40.909 25.23 21.24 34.18 1.82
6820 7983 2.243602 ACTGTGGCTGCCAAATTTTG 57.756 45.000 25.23 8.70 34.18 2.44
6831 7994 3.352554 CCAAATTTTGGCTTGGCAAAC 57.647 42.857 19.44 0.00 45.17 2.93
6832 7995 2.950975 CCAAATTTTGGCTTGGCAAACT 59.049 40.909 19.44 12.95 45.17 2.66
6833 7996 3.243134 CCAAATTTTGGCTTGGCAAACTG 60.243 43.478 19.44 16.02 45.17 3.16
6834 7997 3.280197 AATTTTGGCTTGGCAAACTGT 57.720 38.095 19.44 8.24 0.00 3.55
6835 7998 2.021355 TTTTGGCTTGGCAAACTGTG 57.979 45.000 19.44 0.00 0.00 3.66
6836 7999 0.177604 TTTGGCTTGGCAAACTGTGG 59.822 50.000 16.53 0.00 0.00 4.17
6843 8006 3.854856 GCAAACTGTGGCTGGGAA 58.145 55.556 0.00 0.00 0.00 3.97
6844 8007 1.363807 GCAAACTGTGGCTGGGAAC 59.636 57.895 0.00 0.00 0.00 3.62
6879 8042 6.407865 CCTTCATCTCTCCATATGAACAGTGT 60.408 42.308 3.65 0.00 37.23 3.55
7028 8193 4.558226 TCTTTGCTACCAGTCATGTGAT 57.442 40.909 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 38 0.672711 GCCTAAACGCCTCGGAAACT 60.673 55.000 0.00 0.00 0.00 2.66
41 44 0.442699 GTCTTTGCCTAAACGCCTCG 59.557 55.000 0.00 0.00 0.00 4.63
42 45 0.442699 CGTCTTTGCCTAAACGCCTC 59.557 55.000 0.00 0.00 0.00 4.70
43 46 0.034337 TCGTCTTTGCCTAAACGCCT 59.966 50.000 0.00 0.00 0.00 5.52
44 47 0.165295 GTCGTCTTTGCCTAAACGCC 59.835 55.000 0.00 0.00 0.00 5.68
45 48 0.863144 TGTCGTCTTTGCCTAAACGC 59.137 50.000 0.00 0.00 0.00 4.84
46 49 2.993899 AGATGTCGTCTTTGCCTAAACG 59.006 45.455 0.00 0.00 31.47 3.60
60 63 8.735303 AGAATTCGAAATGATACTAGATGTCG 57.265 34.615 0.00 0.00 0.00 4.35
99 102 9.132923 TGTACCCACATGAATAGTAAAACAAAA 57.867 29.630 0.00 0.00 0.00 2.44
103 106 9.567848 CAAATGTACCCACATGAATAGTAAAAC 57.432 33.333 0.00 0.00 44.83 2.43
156 159 2.304180 CAATAGGGAGCCCAATCGAGAT 59.696 50.000 8.53 0.00 38.92 2.75
160 163 0.179020 TGCAATAGGGAGCCCAATCG 60.179 55.000 8.53 0.00 38.92 3.34
225 228 1.238439 ATATGCTACAACGGCCATGC 58.762 50.000 2.24 0.00 0.00 4.06
265 269 8.985315 TCTCTTAAATCTATCATGCAACCAAT 57.015 30.769 0.00 0.00 0.00 3.16
444 453 9.743057 TCAAATTCGTGAACAGTTTCATATTTT 57.257 25.926 0.00 0.00 43.72 1.82
617 627 1.075536 AGGTTCTTCGCCCATTTTCCT 59.924 47.619 0.00 0.00 0.00 3.36
620 630 0.603065 GCAGGTTCTTCGCCCATTTT 59.397 50.000 0.00 0.00 0.00 1.82
621 631 0.251341 AGCAGGTTCTTCGCCCATTT 60.251 50.000 0.00 0.00 0.00 2.32
624 634 0.902984 TCTAGCAGGTTCTTCGCCCA 60.903 55.000 0.00 0.00 0.00 5.36
625 635 0.249398 TTCTAGCAGGTTCTTCGCCC 59.751 55.000 0.00 0.00 0.00 6.13
626 636 1.360820 GTTCTAGCAGGTTCTTCGCC 58.639 55.000 0.00 0.00 0.00 5.54
627 637 0.992802 CGTTCTAGCAGGTTCTTCGC 59.007 55.000 0.00 0.00 0.00 4.70
629 639 5.652518 AGATAACGTTCTAGCAGGTTCTTC 58.347 41.667 2.82 3.90 0.00 2.87
630 640 5.662674 AGATAACGTTCTAGCAGGTTCTT 57.337 39.130 2.82 0.00 0.00 2.52
631 641 5.662674 AAGATAACGTTCTAGCAGGTTCT 57.337 39.130 2.82 0.00 0.00 3.01
632 642 6.723131 AAAAGATAACGTTCTAGCAGGTTC 57.277 37.500 2.82 0.00 0.00 3.62
655 665 6.127479 ACAACCTTCTAGCATGTGTTCAAAAA 60.127 34.615 0.00 0.00 0.00 1.94
656 666 5.359576 ACAACCTTCTAGCATGTGTTCAAAA 59.640 36.000 0.00 0.00 0.00 2.44
657 667 4.887071 ACAACCTTCTAGCATGTGTTCAAA 59.113 37.500 0.00 0.00 0.00 2.69
658 668 4.460263 ACAACCTTCTAGCATGTGTTCAA 58.540 39.130 0.00 0.00 0.00 2.69
659 669 4.065088 GACAACCTTCTAGCATGTGTTCA 58.935 43.478 0.00 0.00 0.00 3.18
660 670 3.123621 CGACAACCTTCTAGCATGTGTTC 59.876 47.826 0.00 0.00 0.00 3.18
661 671 3.067106 CGACAACCTTCTAGCATGTGTT 58.933 45.455 0.00 0.00 0.00 3.32
662 672 2.299013 TCGACAACCTTCTAGCATGTGT 59.701 45.455 0.00 0.00 0.00 3.72
663 673 2.959516 TCGACAACCTTCTAGCATGTG 58.040 47.619 0.00 0.00 0.00 3.21
664 674 3.678056 TTCGACAACCTTCTAGCATGT 57.322 42.857 0.00 0.00 0.00 3.21
665 675 4.378459 GGTTTTCGACAACCTTCTAGCATG 60.378 45.833 23.27 0.00 42.79 4.06
666 676 3.751698 GGTTTTCGACAACCTTCTAGCAT 59.248 43.478 23.27 0.00 42.79 3.79
667 677 3.135994 GGTTTTCGACAACCTTCTAGCA 58.864 45.455 23.27 0.00 42.79 3.49
668 678 2.483106 GGGTTTTCGACAACCTTCTAGC 59.517 50.000 27.73 10.59 45.12 3.42
669 679 2.735134 CGGGTTTTCGACAACCTTCTAG 59.265 50.000 27.73 13.57 45.12 2.43
670 680 2.758009 CGGGTTTTCGACAACCTTCTA 58.242 47.619 27.73 0.00 45.12 2.10
671 681 1.589803 CGGGTTTTCGACAACCTTCT 58.410 50.000 27.73 0.00 45.12 2.85
672 682 0.040692 GCGGGTTTTCGACAACCTTC 60.041 55.000 27.73 17.72 45.12 3.46
673 683 0.464916 AGCGGGTTTTCGACAACCTT 60.465 50.000 27.73 14.29 45.12 3.50
674 684 0.883370 GAGCGGGTTTTCGACAACCT 60.883 55.000 27.73 12.52 45.12 3.50
675 685 0.883370 AGAGCGGGTTTTCGACAACC 60.883 55.000 22.64 22.64 45.06 3.77
676 686 0.234884 CAGAGCGGGTTTTCGACAAC 59.765 55.000 5.88 5.88 0.00 3.32
677 687 0.882927 CCAGAGCGGGTTTTCGACAA 60.883 55.000 0.00 0.00 0.00 3.18
678 688 1.301401 CCAGAGCGGGTTTTCGACA 60.301 57.895 0.00 0.00 0.00 4.35
679 689 2.677979 GCCAGAGCGGGTTTTCGAC 61.678 63.158 0.00 0.00 34.06 4.20
707 717 1.080354 TACAGTACTGGGCCTGCCT 59.920 57.895 26.12 5.75 36.10 4.75
725 735 2.952978 TGGTACAAAACGCAAATCCTGT 59.047 40.909 0.00 0.00 31.92 4.00
768 1846 3.830744 TCCTATTTAGCGCTTAAGGCA 57.169 42.857 18.68 1.21 41.91 4.75
882 1960 3.445008 GGAGATAGATGGATGCAGGGTA 58.555 50.000 0.00 0.00 0.00 3.69
925 2003 0.463620 GAGAGGCAGAGTAGGGCTTG 59.536 60.000 0.00 0.00 41.74 4.01
951 2029 0.980231 AGAGGAGAGGCGGCAATTCT 60.980 55.000 13.08 5.14 0.00 2.40
997 2081 2.650813 GAAGTGATCCGCGGCATCCT 62.651 60.000 23.51 18.14 0.00 3.24
1059 2143 0.687427 TGATGAGGCCGAGGATGTCA 60.687 55.000 0.00 0.00 0.00 3.58
1135 2219 6.168389 GGATTAAAACGGAGAAGGAACAGTA 58.832 40.000 0.00 0.00 0.00 2.74
1197 2281 2.044555 TCTCGACGACCTTGGCGAT 61.045 57.895 0.00 0.00 35.20 4.58
1274 2358 2.675772 GGACTGACGGGGTCGACT 60.676 66.667 16.46 0.00 40.11 4.18
1298 2382 1.067974 CATGAGAGAGAGCTGAGCTGG 59.932 57.143 13.71 0.00 39.88 4.85
1377 2467 1.289276 CACAGCCAAAACCTGCAAAC 58.711 50.000 0.00 0.00 33.65 2.93
1448 2538 4.141711 ACTGAAAGAGACACAAGGTAAGCA 60.142 41.667 0.00 0.00 37.43 3.91
1498 2588 3.372025 GGGGATTCAGCAACTCAACCTAT 60.372 47.826 0.00 0.00 0.00 2.57
1564 2654 1.571460 CACAGCTCCGACAGTTTGC 59.429 57.895 0.00 0.00 0.00 3.68
1690 2780 6.148264 GGATACTTAATACAGGTGTAGACGC 58.852 44.000 0.00 0.00 33.52 5.19
1717 2812 6.698766 ACAAGAGCAATGAACTTTTCAATGAC 59.301 34.615 7.93 2.24 41.91 3.06
1786 2881 5.003804 AGAAATGTACCTAACCTGCAACAG 58.996 41.667 0.00 0.00 0.00 3.16
1787 2882 4.980573 AGAAATGTACCTAACCTGCAACA 58.019 39.130 0.00 0.00 0.00 3.33
1867 2962 0.741221 GGCCAACATCCGAGTCAGAC 60.741 60.000 0.00 0.00 0.00 3.51
1954 3049 0.981183 ACCCTCCGAACACTGCATAA 59.019 50.000 0.00 0.00 0.00 1.90
1961 3056 0.391597 TCAACTCACCCTCCGAACAC 59.608 55.000 0.00 0.00 0.00 3.32
2021 3116 3.020274 TGGAGCACAACAGCAGTTTTTA 58.980 40.909 0.00 0.00 35.28 1.52
2023 3118 1.473258 TGGAGCACAACAGCAGTTTT 58.527 45.000 0.00 0.00 35.28 2.43
2036 3131 5.684704 CTGGTAGATAAAAGGAATGGAGCA 58.315 41.667 0.00 0.00 0.00 4.26
2040 3135 7.340487 AGAAAAGCTGGTAGATAAAAGGAATGG 59.660 37.037 0.00 0.00 0.00 3.16
2252 3350 8.470002 GGGCTGTGAGATCAAAATAAAATTAGT 58.530 33.333 0.00 0.00 0.00 2.24
2253 3351 7.922811 GGGGCTGTGAGATCAAAATAAAATTAG 59.077 37.037 0.00 0.00 0.00 1.73
2359 3458 4.273235 TGATGATTATTTGTGCAGGCTACG 59.727 41.667 0.00 0.00 0.00 3.51
2440 3539 8.715191 TCTAACACAAACATTGAGCAATTTTT 57.285 26.923 2.43 2.43 32.68 1.94
2469 3569 7.394359 AGAGAGCTGAATTGGTTAAATTTGCTA 59.606 33.333 0.00 0.00 42.81 3.49
2471 3571 6.309737 CAGAGAGCTGAATTGGTTAAATTTGC 59.690 38.462 0.00 0.00 45.17 3.68
2542 3644 5.454062 AGCTATGAGAGGACTACACAGATT 58.546 41.667 0.00 0.00 0.00 2.40
2577 3679 6.237808 CGCCAATTAAGCAAATGAAATGGTAC 60.238 38.462 1.09 0.00 28.34 3.34
2630 3732 4.275810 AGCAAACATCCACAGCTAATCAT 58.724 39.130 0.00 0.00 33.06 2.45
2742 3844 8.701908 AGCTTCCAATGATATAATGTTCACAT 57.298 30.769 0.00 0.00 38.41 3.21
2749 3851 8.295288 GTGAAAGGAGCTTCCAATGATATAATG 58.705 37.037 5.21 0.00 39.61 1.90
2776 3878 5.346822 ACAAAGAATACCGTCACATTCGTAC 59.653 40.000 0.00 0.00 36.48 3.67
2794 3896 7.686438 ATATGACATGCAAGTTACACAAAGA 57.314 32.000 0.00 0.00 0.00 2.52
2818 3920 9.967451 TTTTGACCACATGTTAGAGGAATAATA 57.033 29.630 6.93 0.00 0.00 0.98
2873 3975 6.740960 AGTCCTACTCCCTCTATCCATGTATA 59.259 42.308 0.00 0.00 0.00 1.47
2874 3976 5.557939 AGTCCTACTCCCTCTATCCATGTAT 59.442 44.000 0.00 0.00 0.00 2.29
2931 4033 2.607187 AGTAAAGTTGAGCGGTCATCG 58.393 47.619 19.37 0.00 42.76 3.84
2962 4065 7.334858 ACCTGGTAAACACAAAATGAAAACAT 58.665 30.769 0.00 0.00 0.00 2.71
3146 4249 4.005650 AGATACTGCACACCATCTGTTTG 58.994 43.478 0.00 0.00 0.00 2.93
3180 4283 4.082787 AGGCACATGTTCCAAAAATACTCG 60.083 41.667 17.16 0.00 0.00 4.18
3261 4364 5.702209 GGTGTACCTCGAAATTCAAACCTTA 59.298 40.000 0.00 0.00 0.00 2.69
3265 4368 4.319984 GGTGGTGTACCTCGAAATTCAAAC 60.320 45.833 2.32 0.00 46.51 2.93
3286 4389 5.393352 GGTTGAAGTTTAAGAAAACACCGGT 60.393 40.000 0.00 0.00 46.18 5.28
3287 4390 5.038683 GGTTGAAGTTTAAGAAAACACCGG 58.961 41.667 0.00 0.00 46.18 5.28
3288 4391 5.886992 AGGTTGAAGTTTAAGAAAACACCG 58.113 37.500 4.04 0.00 46.18 4.94
3289 4392 8.410912 ACATAGGTTGAAGTTTAAGAAAACACC 58.589 33.333 4.04 2.84 46.18 4.16
3454 4560 3.164268 ACCATTTCCATTAGCTGCAACA 58.836 40.909 1.02 0.00 0.00 3.33
3525 4632 3.301835 CGCAATCTCCGATCTGTTAAACG 60.302 47.826 0.00 0.00 0.00 3.60
3643 4750 2.248280 ACACACCAATCACAACGCTA 57.752 45.000 0.00 0.00 0.00 4.26
3646 4753 2.961522 GGTACACACCAATCACAACG 57.038 50.000 0.00 0.00 45.04 4.10
3686 4794 4.276642 TGCATTTACCAACATAGCATCCA 58.723 39.130 0.00 0.00 0.00 3.41
3811 4919 6.819649 TGAGGGAACGTAAAACTATATGTTGG 59.180 38.462 0.00 0.00 39.13 3.77
3866 4974 6.374333 TCAAAGAAGTACAAACAAAGACAGCT 59.626 34.615 0.00 0.00 0.00 4.24
3970 5078 5.548406 AGTTTTAGACATACCGCAGAAAGT 58.452 37.500 0.00 0.00 0.00 2.66
3992 5100 9.362539 AGCTTAATTTGAATGCTGTGAAATTAG 57.637 29.630 0.00 0.00 33.82 1.73
4055 5176 5.346822 GCACCAGAAAACAATTAGAGCAATG 59.653 40.000 0.00 0.00 0.00 2.82
4125 5246 7.992754 ATTTGGCTAGTCAATGATATCTTCC 57.007 36.000 11.23 0.00 0.00 3.46
4171 5292 8.010697 TGATATGGAGGGAGTGATAAAGAGTAA 58.989 37.037 0.00 0.00 0.00 2.24
4182 5303 7.739825 TCTTCTATTTTGATATGGAGGGAGTG 58.260 38.462 0.00 0.00 0.00 3.51
4275 5396 8.978874 TGCACACTCAATTTTAGGATATATGT 57.021 30.769 0.00 0.00 0.00 2.29
4276 5397 9.888878 CTTGCACACTCAATTTTAGGATATATG 57.111 33.333 0.00 0.00 0.00 1.78
4277 5398 9.632638 ACTTGCACACTCAATTTTAGGATATAT 57.367 29.630 0.00 0.00 0.00 0.86
4278 5399 9.461312 AACTTGCACACTCAATTTTAGGATATA 57.539 29.630 0.00 0.00 0.00 0.86
4279 5400 7.944729 ACTTGCACACTCAATTTTAGGATAT 57.055 32.000 0.00 0.00 0.00 1.63
4280 5401 7.446931 TGAACTTGCACACTCAATTTTAGGATA 59.553 33.333 0.00 0.00 0.00 2.59
4314 5435 5.134202 TCATCCATCATATACACCGTGAC 57.866 43.478 5.28 0.00 0.00 3.67
4316 5437 7.439157 AAAATCATCCATCATATACACCGTG 57.561 36.000 0.00 0.00 0.00 4.94
4317 5438 7.095229 CGAAAAATCATCCATCATATACACCGT 60.095 37.037 0.00 0.00 0.00 4.83
4331 5452 6.693113 GCCAAGATAGAAACGAAAAATCATCC 59.307 38.462 0.00 0.00 0.00 3.51
4359 5480 5.880887 AGGCCAATTAACTAGAGTACAAAGC 59.119 40.000 5.01 0.00 0.00 3.51
4361 5482 9.444600 CTAAAGGCCAATTAACTAGAGTACAAA 57.555 33.333 5.01 0.00 0.00 2.83
4441 5562 5.195001 ACCAACCAATGAACATGTGTTAC 57.805 39.130 0.00 0.00 38.56 2.50
4533 5654 4.222336 AGAGAGAGAGAGAGAGAGAGGAG 58.778 52.174 0.00 0.00 0.00 3.69
4534 5655 4.078922 AGAGAGAGAGAGAGAGAGAGAGGA 60.079 50.000 0.00 0.00 0.00 3.71
4535 5656 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
4801 5924 1.952296 CAATTCATAGGTCTGCCTGGC 59.048 52.381 12.87 12.87 46.47 4.85
4978 6106 7.945664 AGTACTACTACTAGCAAGCTATTCCAT 59.054 37.037 1.74 0.00 30.81 3.41
5044 6172 1.210478 TGCCACCTAGAAATCTCTGGC 59.790 52.381 15.07 15.07 39.64 4.85
5132 6260 4.648626 GCTGCCAGACTGCCACCA 62.649 66.667 0.00 0.00 37.26 4.17
5133 6261 4.648626 TGCTGCCAGACTGCCACC 62.649 66.667 0.00 0.00 42.24 4.61
5134 6262 1.975407 ATTGCTGCCAGACTGCCAC 60.975 57.895 0.00 0.00 42.24 5.01
5135 6263 1.974875 CATTGCTGCCAGACTGCCA 60.975 57.895 0.00 0.00 42.24 4.92
5136 6264 2.707849 CCATTGCTGCCAGACTGCC 61.708 63.158 0.00 0.00 42.24 4.85
5137 6265 1.035932 ATCCATTGCTGCCAGACTGC 61.036 55.000 0.00 0.00 43.16 4.40
5138 6266 0.738975 CATCCATTGCTGCCAGACTG 59.261 55.000 0.00 0.00 0.00 3.51
5139 6267 0.330604 ACATCCATTGCTGCCAGACT 59.669 50.000 0.00 0.00 0.00 3.24
5140 6268 0.454600 CACATCCATTGCTGCCAGAC 59.545 55.000 0.00 0.00 0.00 3.51
5141 6269 1.317431 GCACATCCATTGCTGCCAGA 61.317 55.000 0.00 0.00 37.00 3.86
5142 6270 1.141019 GCACATCCATTGCTGCCAG 59.859 57.895 0.00 0.00 37.00 4.85
5143 6271 1.186267 TTGCACATCCATTGCTGCCA 61.186 50.000 0.00 0.00 40.86 4.92
5144 6272 0.738412 GTTGCACATCCATTGCTGCC 60.738 55.000 0.00 0.00 40.86 4.85
5145 6273 0.038067 TGTTGCACATCCATTGCTGC 60.038 50.000 0.00 0.00 40.86 5.25
5146 6274 1.670674 GGTGTTGCACATCCATTGCTG 60.671 52.381 1.61 0.00 40.86 4.41
5263 6395 5.422214 AGACCGTTGGATCTTTGTAATCT 57.578 39.130 0.00 0.00 0.00 2.40
5331 6463 8.993121 CAACGGAAAACAGAGCATATAATCTAT 58.007 33.333 0.00 0.00 0.00 1.98
5332 6464 7.985184 ACAACGGAAAACAGAGCATATAATCTA 59.015 33.333 0.00 0.00 0.00 1.98
5335 6467 6.238103 CGACAACGGAAAACAGAGCATATAAT 60.238 38.462 0.00 0.00 35.72 1.28
5340 6472 1.531149 CGACAACGGAAAACAGAGCAT 59.469 47.619 0.00 0.00 35.72 3.79
5359 6491 5.466819 TCTCACATCTAACTTACCACAACG 58.533 41.667 0.00 0.00 0.00 4.10
5398 6530 8.333908 GTCACTATTTGAGATGACATGAATGTC 58.666 37.037 15.12 15.12 45.25 3.06
5409 6542 7.065085 CCCTTACAACAGTCACTATTTGAGATG 59.935 40.741 5.50 0.00 33.71 2.90
5415 6548 4.980573 TGCCCTTACAACAGTCACTATTT 58.019 39.130 0.00 0.00 0.00 1.40
5419 6552 3.214328 CTTTGCCCTTACAACAGTCACT 58.786 45.455 0.00 0.00 0.00 3.41
5423 6556 1.681264 GCACTTTGCCCTTACAACAGT 59.319 47.619 0.00 0.00 37.42 3.55
5424 6557 1.956477 AGCACTTTGCCCTTACAACAG 59.044 47.619 0.00 0.00 46.52 3.16
5466 6601 7.367285 TGAAATTTAACAAGTCAGCATGGTAC 58.633 34.615 0.00 0.00 36.16 3.34
5467 6602 7.517614 TGAAATTTAACAAGTCAGCATGGTA 57.482 32.000 0.00 0.00 36.16 3.25
5468 6603 6.403866 TGAAATTTAACAAGTCAGCATGGT 57.596 33.333 0.00 0.00 36.16 3.55
5469 6604 7.148540 CCAATGAAATTTAACAAGTCAGCATGG 60.149 37.037 0.00 0.00 31.22 3.66
5474 6609 8.918658 CACATCCAATGAAATTTAACAAGTCAG 58.081 33.333 0.00 0.00 31.22 3.51
5519 6655 8.771920 TCGAGTAAAAAGAAGCAATAATCTCA 57.228 30.769 0.00 0.00 0.00 3.27
5522 6658 9.052080 GTGTTCGAGTAAAAAGAAGCAATAATC 57.948 33.333 0.00 0.00 0.00 1.75
5524 6660 8.149973 AGTGTTCGAGTAAAAAGAAGCAATAA 57.850 30.769 0.00 0.00 0.00 1.40
5640 6777 5.184096 TCTCCTCAGATTCTAGACACAACAC 59.816 44.000 0.00 0.00 0.00 3.32
5679 6816 4.654915 TCAGCAACCATTGAAGAATCTGA 58.345 39.130 0.00 0.00 0.00 3.27
5696 6833 2.357881 CTGACCGCAGCTTCAGCA 60.358 61.111 7.72 0.00 45.16 4.41
5708 6845 4.974399 TCTTCTTCTTTTCCCTTCTGACC 58.026 43.478 0.00 0.00 0.00 4.02
5723 6860 9.877178 TCCTCTTCAACTAATACATTCTTCTTC 57.123 33.333 0.00 0.00 0.00 2.87
5738 6881 3.796111 TCCTTCCTCATCCTCTTCAACT 58.204 45.455 0.00 0.00 0.00 3.16
5841 6999 7.636150 ATTGTGTTTCTTCATTATCCTCTGG 57.364 36.000 0.00 0.00 0.00 3.86
5850 7008 5.507315 GGTCGACCAATTGTGTTTCTTCATT 60.507 40.000 29.75 0.00 35.64 2.57
5865 7023 1.594833 CTTCATCCGGGTCGACCAA 59.405 57.895 34.40 20.02 40.22 3.67
5908 7066 6.427441 ACCCTTCTGTTCTTTTTCTTCTTCT 58.573 36.000 0.00 0.00 0.00 2.85
5909 7067 6.701145 ACCCTTCTGTTCTTTTTCTTCTTC 57.299 37.500 0.00 0.00 0.00 2.87
5924 7082 1.280133 TCATCCTCTGCAACCCTTCTG 59.720 52.381 0.00 0.00 0.00 3.02
5974 7135 2.223611 GCATACATCTCAGCATCACTGC 59.776 50.000 0.00 0.00 46.76 4.40
6040 7201 9.139174 CTTGTTGCTTCTTACTTTTCTTTTTCA 57.861 29.630 0.00 0.00 0.00 2.69
6090 7251 5.178797 CCGTGGTCAGAAGTCAATAATTCT 58.821 41.667 0.00 0.00 36.19 2.40
6102 7263 1.891919 GCAAGCACCGTGGTCAGAA 60.892 57.895 3.19 0.00 0.00 3.02
6358 7521 1.611977 CTACACCAACAGGACTGACGA 59.388 52.381 6.29 0.00 0.00 4.20
6473 7636 3.495331 TGTTCACCCAACACTTGCATAT 58.505 40.909 0.00 0.00 40.29 1.78
6583 7746 5.414133 AGTGTATAGCCTTAAGGGACCTA 57.586 43.478 23.06 15.32 37.23 3.08
6584 7747 4.282292 AGTGTATAGCCTTAAGGGACCT 57.718 45.455 23.06 13.65 37.23 3.85
6585 7748 5.123936 CAAAGTGTATAGCCTTAAGGGACC 58.876 45.833 23.06 6.58 37.23 4.46
6586 7749 5.123936 CCAAAGTGTATAGCCTTAAGGGAC 58.876 45.833 23.06 7.32 37.23 4.46
6604 7767 0.954452 GCCACAGTCTCCAACCAAAG 59.046 55.000 0.00 0.00 0.00 2.77
6605 7768 0.467290 GGCCACAGTCTCCAACCAAA 60.467 55.000 0.00 0.00 0.00 3.28
6606 7769 1.150536 GGCCACAGTCTCCAACCAA 59.849 57.895 0.00 0.00 0.00 3.67
6607 7770 1.640593 TTGGCCACAGTCTCCAACCA 61.641 55.000 3.88 0.00 35.17 3.67
6608 7771 0.890996 CTTGGCCACAGTCTCCAACC 60.891 60.000 3.88 0.00 35.17 3.77
6609 7772 1.518903 GCTTGGCCACAGTCTCCAAC 61.519 60.000 3.88 0.00 35.17 3.77
6610 7773 1.228245 GCTTGGCCACAGTCTCCAA 60.228 57.895 3.88 3.63 37.52 3.53
6611 7774 2.431683 GCTTGGCCACAGTCTCCA 59.568 61.111 3.88 0.00 0.00 3.86
6636 7799 1.065491 CCATACTTGTGTGGCTAGCCA 60.065 52.381 32.88 32.88 45.02 4.75
6637 7800 1.668419 CCATACTTGTGTGGCTAGCC 58.332 55.000 27.71 27.71 0.00 3.93
6643 7806 0.527565 GGCTTGCCATACTTGTGTGG 59.472 55.000 11.46 11.46 38.55 4.17
6644 7807 1.068333 GTGGCTTGCCATACTTGTGTG 60.068 52.381 17.86 0.00 0.00 3.82
6645 7808 1.247567 GTGGCTTGCCATACTTGTGT 58.752 50.000 17.86 0.00 0.00 3.72
6646 7809 1.068333 GTGTGGCTTGCCATACTTGTG 60.068 52.381 26.80 0.00 0.00 3.33
6647 7810 1.247567 GTGTGGCTTGCCATACTTGT 58.752 50.000 26.80 0.00 0.00 3.16
6648 7811 1.246649 TGTGTGGCTTGCCATACTTG 58.753 50.000 31.14 0.00 33.86 3.16
6649 7812 1.888512 CTTGTGTGGCTTGCCATACTT 59.111 47.619 31.14 0.00 33.86 2.24
6650 7813 1.202927 ACTTGTGTGGCTTGCCATACT 60.203 47.619 31.14 16.16 33.86 2.12
6651 7814 1.068333 CACTTGTGTGGCTTGCCATAC 60.068 52.381 27.18 27.18 40.33 2.39
6652 7815 1.246649 CACTTGTGTGGCTTGCCATA 58.753 50.000 17.86 12.40 40.33 2.74
6653 7816 2.043625 CACTTGTGTGGCTTGCCAT 58.956 52.632 17.86 0.00 40.33 4.40
6654 7817 3.524014 CACTTGTGTGGCTTGCCA 58.476 55.556 10.65 10.65 40.33 4.92
6663 7826 4.037923 CCAATTTCTTAGCCACACTTGTGT 59.962 41.667 8.52 0.00 44.21 3.72
6664 7827 4.278170 TCCAATTTCTTAGCCACACTTGTG 59.722 41.667 2.13 2.13 45.23 3.33
6665 7828 4.278419 GTCCAATTTCTTAGCCACACTTGT 59.722 41.667 0.00 0.00 0.00 3.16
6666 7829 4.613622 CGTCCAATTTCTTAGCCACACTTG 60.614 45.833 0.00 0.00 0.00 3.16
6667 7830 3.502211 CGTCCAATTTCTTAGCCACACTT 59.498 43.478 0.00 0.00 0.00 3.16
6668 7831 3.074412 CGTCCAATTTCTTAGCCACACT 58.926 45.455 0.00 0.00 0.00 3.55
6669 7832 2.414161 GCGTCCAATTTCTTAGCCACAC 60.414 50.000 0.00 0.00 0.00 3.82
6670 7833 1.810151 GCGTCCAATTTCTTAGCCACA 59.190 47.619 0.00 0.00 0.00 4.17
6671 7834 1.132453 GGCGTCCAATTTCTTAGCCAC 59.868 52.381 0.00 0.00 42.37 5.01
6672 7835 1.459450 GGCGTCCAATTTCTTAGCCA 58.541 50.000 0.00 0.00 42.37 4.75
6673 7836 1.459450 TGGCGTCCAATTTCTTAGCC 58.541 50.000 0.00 0.00 43.05 3.93
6674 7837 3.569250 TTTGGCGTCCAATTTCTTAGC 57.431 42.857 11.30 0.00 43.55 3.09
6675 7838 6.618379 GCAAAATTTGGCGTCCAATTTCTTAG 60.618 38.462 11.68 4.97 43.55 2.18
6676 7839 5.178438 GCAAAATTTGGCGTCCAATTTCTTA 59.822 36.000 11.68 0.00 43.55 2.10
6677 7840 4.024133 GCAAAATTTGGCGTCCAATTTCTT 60.024 37.500 11.68 8.82 43.55 2.52
6678 7841 3.498018 GCAAAATTTGGCGTCCAATTTCT 59.502 39.130 11.68 1.44 43.55 2.52
6679 7842 3.249559 TGCAAAATTTGGCGTCCAATTTC 59.750 39.130 11.68 2.44 43.55 2.17
6680 7843 3.209410 TGCAAAATTTGGCGTCCAATTT 58.791 36.364 12.85 6.01 43.55 1.82
6681 7844 2.843701 TGCAAAATTTGGCGTCCAATT 58.156 38.095 12.85 2.77 43.55 2.32
6682 7845 2.540265 TGCAAAATTTGGCGTCCAAT 57.460 40.000 12.85 0.00 43.55 3.16
6683 7846 2.315925 TTGCAAAATTTGGCGTCCAA 57.684 40.000 12.85 7.15 42.29 3.53
6684 7847 2.315925 TTTGCAAAATTTGGCGTCCA 57.684 40.000 10.02 0.00 0.00 4.02
6685 7848 2.611751 ACTTTTGCAAAATTTGGCGTCC 59.388 40.909 24.06 0.00 0.00 4.79
6686 7849 3.942539 ACTTTTGCAAAATTTGGCGTC 57.057 38.095 24.06 0.00 0.00 5.19
6687 7850 3.181502 CCAACTTTTGCAAAATTTGGCGT 60.182 39.130 38.93 25.15 45.44 5.68
6688 7851 3.361414 CCAACTTTTGCAAAATTTGGCG 58.639 40.909 38.93 26.34 45.44 5.69
6722 7885 1.059584 TGGCCCACCTGTCAAAGAGA 61.060 55.000 0.00 0.00 36.63 3.10
6723 7886 0.038744 ATGGCCCACCTGTCAAAGAG 59.961 55.000 0.00 0.00 36.63 2.85
6724 7887 1.281867 CTATGGCCCACCTGTCAAAGA 59.718 52.381 0.00 0.00 36.63 2.52
6725 7888 1.683011 CCTATGGCCCACCTGTCAAAG 60.683 57.143 0.00 0.00 36.63 2.77
6726 7889 0.331278 CCTATGGCCCACCTGTCAAA 59.669 55.000 0.00 0.00 36.63 2.69
6727 7890 1.570857 CCCTATGGCCCACCTGTCAA 61.571 60.000 0.00 0.00 36.63 3.18
6728 7891 2.000701 CCCTATGGCCCACCTGTCA 61.001 63.158 0.00 0.00 36.63 3.58
6729 7892 2.757124 CCCCTATGGCCCACCTGTC 61.757 68.421 0.00 0.00 36.63 3.51
6730 7893 2.696125 CCCCTATGGCCCACCTGT 60.696 66.667 0.00 0.00 36.63 4.00
6739 7902 2.958355 CCACACTTTATTGCCCCTATGG 59.042 50.000 0.00 0.00 37.09 2.74
6740 7903 2.362077 GCCACACTTTATTGCCCCTATG 59.638 50.000 0.00 0.00 0.00 2.23
6741 7904 2.024464 TGCCACACTTTATTGCCCCTAT 60.024 45.455 0.00 0.00 0.00 2.57
6742 7905 1.356059 TGCCACACTTTATTGCCCCTA 59.644 47.619 0.00 0.00 0.00 3.53
6743 7906 0.114168 TGCCACACTTTATTGCCCCT 59.886 50.000 0.00 0.00 0.00 4.79
6744 7907 0.972883 TTGCCACACTTTATTGCCCC 59.027 50.000 0.00 0.00 0.00 5.80
6745 7908 1.672737 GCTTGCCACACTTTATTGCCC 60.673 52.381 0.00 0.00 0.00 5.36
6746 7909 1.672737 GGCTTGCCACACTTTATTGCC 60.673 52.381 6.79 0.00 0.00 4.52
6747 7910 1.000731 TGGCTTGCCACACTTTATTGC 59.999 47.619 10.65 0.00 0.00 3.56
6748 7911 3.383620 TTGGCTTGCCACACTTTATTG 57.616 42.857 14.52 0.00 0.00 1.90
6749 7912 3.387699 ACTTTGGCTTGCCACACTTTATT 59.612 39.130 14.52 0.00 0.00 1.40
6750 7913 2.965147 ACTTTGGCTTGCCACACTTTAT 59.035 40.909 14.52 0.00 0.00 1.40
6751 7914 2.100584 CACTTTGGCTTGCCACACTTTA 59.899 45.455 14.52 0.00 0.00 1.85
6752 7915 1.134729 CACTTTGGCTTGCCACACTTT 60.135 47.619 14.52 0.00 0.00 2.66
6753 7916 0.461135 CACTTTGGCTTGCCACACTT 59.539 50.000 14.52 0.00 0.00 3.16
6754 7917 0.684153 ACACTTTGGCTTGCCACACT 60.684 50.000 14.52 0.00 0.00 3.55
6755 7918 0.528249 CACACTTTGGCTTGCCACAC 60.528 55.000 14.52 0.00 0.00 3.82
6756 7919 1.674764 CCACACTTTGGCTTGCCACA 61.675 55.000 14.52 7.10 39.07 4.17
6757 7920 1.067916 CCACACTTTGGCTTGCCAC 59.932 57.895 14.52 0.00 39.07 5.01
6758 7921 3.536164 CCACACTTTGGCTTGCCA 58.464 55.556 10.65 10.65 39.07 4.92
6766 7929 3.499918 TGTTTGGTTTTTGCCACACTTTG 59.500 39.130 3.55 0.00 39.31 2.77
6767 7930 3.500299 GTGTTTGGTTTTTGCCACACTTT 59.500 39.130 3.55 0.00 39.31 2.66
6768 7931 3.070748 GTGTTTGGTTTTTGCCACACTT 58.929 40.909 3.55 0.00 39.31 3.16
6769 7932 2.037772 TGTGTTTGGTTTTTGCCACACT 59.962 40.909 0.00 0.00 39.31 3.55
6770 7933 2.417719 TGTGTTTGGTTTTTGCCACAC 58.582 42.857 0.00 0.00 39.10 3.82
6771 7934 2.839486 TGTGTTTGGTTTTTGCCACA 57.161 40.000 0.00 0.00 38.42 4.17
6772 7935 2.223226 GCATGTGTTTGGTTTTTGCCAC 60.223 45.455 0.00 0.00 38.42 5.01
6773 7936 2.012673 GCATGTGTTTGGTTTTTGCCA 58.987 42.857 0.00 0.00 36.62 4.92
6774 7937 2.287769 AGCATGTGTTTGGTTTTTGCC 58.712 42.857 0.00 0.00 0.00 4.52
6775 7938 3.487209 CCAAGCATGTGTTTGGTTTTTGC 60.487 43.478 17.38 0.00 46.94 3.68
6776 7939 4.275838 CCAAGCATGTGTTTGGTTTTTG 57.724 40.909 17.38 0.00 46.94 2.44
6783 7946 2.285756 CAGTTTGCCAAGCATGTGTTTG 59.714 45.455 3.00 3.00 38.76 2.93
6784 7947 2.093553 ACAGTTTGCCAAGCATGTGTTT 60.094 40.909 0.00 0.00 38.76 2.83
6785 7948 1.481772 ACAGTTTGCCAAGCATGTGTT 59.518 42.857 0.00 0.00 38.76 3.32
6786 7949 1.113788 ACAGTTTGCCAAGCATGTGT 58.886 45.000 0.00 0.00 38.76 3.72
6787 7950 1.493772 CACAGTTTGCCAAGCATGTG 58.506 50.000 7.23 7.23 39.50 3.21
6788 7951 0.390124 CCACAGTTTGCCAAGCATGT 59.610 50.000 0.00 0.00 38.76 3.21
6789 7952 0.947180 GCCACAGTTTGCCAAGCATG 60.947 55.000 0.00 0.00 38.76 4.06
6790 7953 1.117142 AGCCACAGTTTGCCAAGCAT 61.117 50.000 0.00 0.00 38.76 3.79
6791 7954 1.757731 AGCCACAGTTTGCCAAGCA 60.758 52.632 0.00 0.00 36.47 3.91
6792 7955 1.300388 CAGCCACAGTTTGCCAAGC 60.300 57.895 0.00 0.00 0.00 4.01
6793 7956 1.300388 GCAGCCACAGTTTGCCAAG 60.300 57.895 0.00 0.00 31.79 3.61
6794 7957 2.813901 GCAGCCACAGTTTGCCAA 59.186 55.556 0.00 0.00 31.79 4.52
6797 7960 0.249996 ATTTGGCAGCCACAGTTTGC 60.250 50.000 15.89 0.00 37.11 3.68
6798 7961 2.243602 AATTTGGCAGCCACAGTTTG 57.756 45.000 15.89 0.00 30.78 2.93
6799 7962 2.944349 CAAAATTTGGCAGCCACAGTTT 59.056 40.909 18.20 18.20 32.82 2.66
6800 7963 2.563702 CAAAATTTGGCAGCCACAGTT 58.436 42.857 15.89 11.14 30.78 3.16
6801 7964 1.202675 CCAAAATTTGGCAGCCACAGT 60.203 47.619 15.89 3.45 45.17 3.55
6802 7965 1.515081 CCAAAATTTGGCAGCCACAG 58.485 50.000 15.89 0.10 45.17 3.66
6803 7966 3.702147 CCAAAATTTGGCAGCCACA 57.298 47.368 15.89 8.63 45.17 4.17
6812 7975 3.377798 ACAGTTTGCCAAGCCAAAATTTG 59.622 39.130 0.00 0.00 36.55 2.32
6813 7976 3.377798 CACAGTTTGCCAAGCCAAAATTT 59.622 39.130 0.00 0.00 36.55 1.82
6814 7977 2.944349 CACAGTTTGCCAAGCCAAAATT 59.056 40.909 0.00 0.00 36.55 1.82
6815 7978 2.563702 CACAGTTTGCCAAGCCAAAAT 58.436 42.857 0.00 0.00 36.55 1.82
6816 7979 1.406614 CCACAGTTTGCCAAGCCAAAA 60.407 47.619 0.00 0.00 36.55 2.44
6817 7980 0.177604 CCACAGTTTGCCAAGCCAAA 59.822 50.000 0.00 0.00 32.66 3.28
6818 7981 1.821936 CCACAGTTTGCCAAGCCAA 59.178 52.632 0.00 0.00 0.00 4.52
6819 7982 2.795110 GCCACAGTTTGCCAAGCCA 61.795 57.895 0.00 0.00 0.00 4.75
6820 7983 2.029518 GCCACAGTTTGCCAAGCC 59.970 61.111 0.00 0.00 0.00 4.35
6821 7984 1.300388 CAGCCACAGTTTGCCAAGC 60.300 57.895 0.00 0.00 0.00 4.01
6822 7985 1.364901 CCAGCCACAGTTTGCCAAG 59.635 57.895 0.00 0.00 0.00 3.61
6823 7986 2.132996 CCCAGCCACAGTTTGCCAA 61.133 57.895 0.00 0.00 0.00 4.52
6824 7987 2.521465 CCCAGCCACAGTTTGCCA 60.521 61.111 0.00 0.00 0.00 4.92
6825 7988 1.832167 TTCCCAGCCACAGTTTGCC 60.832 57.895 0.00 0.00 0.00 4.52
6826 7989 1.363807 GTTCCCAGCCACAGTTTGC 59.636 57.895 0.00 0.00 0.00 3.68
6827 7990 0.754957 TGGTTCCCAGCCACAGTTTG 60.755 55.000 0.00 0.00 0.00 2.93
6828 7991 0.032615 TTGGTTCCCAGCCACAGTTT 60.033 50.000 0.00 0.00 35.46 2.66
6829 7992 0.032615 TTTGGTTCCCAGCCACAGTT 60.033 50.000 0.00 0.00 35.46 3.16
6830 7993 0.755327 GTTTGGTTCCCAGCCACAGT 60.755 55.000 0.00 0.00 35.46 3.55
6831 7994 0.754957 TGTTTGGTTCCCAGCCACAG 60.755 55.000 0.00 0.00 35.46 3.66
6832 7995 0.754957 CTGTTTGGTTCCCAGCCACA 60.755 55.000 0.00 0.00 35.46 4.17
6833 7996 2.041153 CTGTTTGGTTCCCAGCCAC 58.959 57.895 0.00 0.00 35.46 5.01
6834 7997 1.832167 GCTGTTTGGTTCCCAGCCA 60.832 57.895 0.00 0.00 44.49 4.75
6835 7998 3.051210 GCTGTTTGGTTCCCAGCC 58.949 61.111 0.00 0.00 44.49 4.85
6837 8000 1.908299 GGGGCTGTTTGGTTCCCAG 60.908 63.158 0.00 0.00 40.53 4.45
6838 8001 1.955458 AAGGGGCTGTTTGGTTCCCA 61.955 55.000 0.00 0.00 40.53 4.37
6839 8002 1.152333 AAGGGGCTGTTTGGTTCCC 60.152 57.895 0.00 0.00 38.03 3.97
6840 8003 0.469144 TGAAGGGGCTGTTTGGTTCC 60.469 55.000 0.00 0.00 0.00 3.62
6841 8004 1.546029 GATGAAGGGGCTGTTTGGTTC 59.454 52.381 0.00 0.00 0.00 3.62
6842 8005 1.147817 AGATGAAGGGGCTGTTTGGTT 59.852 47.619 0.00 0.00 0.00 3.67
6843 8006 0.779997 AGATGAAGGGGCTGTTTGGT 59.220 50.000 0.00 0.00 0.00 3.67
6844 8007 1.005215 AGAGATGAAGGGGCTGTTTGG 59.995 52.381 0.00 0.00 0.00 3.28
6845 8008 2.363683 GAGAGATGAAGGGGCTGTTTG 58.636 52.381 0.00 0.00 0.00 2.93
6846 8009 1.283321 GGAGAGATGAAGGGGCTGTTT 59.717 52.381 0.00 0.00 0.00 2.83
6847 8010 0.915364 GGAGAGATGAAGGGGCTGTT 59.085 55.000 0.00 0.00 0.00 3.16
6848 8011 0.252881 TGGAGAGATGAAGGGGCTGT 60.253 55.000 0.00 0.00 0.00 4.40
6849 8012 1.138568 ATGGAGAGATGAAGGGGCTG 58.861 55.000 0.00 0.00 0.00 4.85
6850 8013 2.803285 TATGGAGAGATGAAGGGGCT 57.197 50.000 0.00 0.00 0.00 5.19
6851 8014 2.909006 TCATATGGAGAGATGAAGGGGC 59.091 50.000 2.13 0.00 26.56 5.80
6852 8015 4.349048 TGTTCATATGGAGAGATGAAGGGG 59.651 45.833 2.13 0.00 39.82 4.79
6853 8016 5.071519 ACTGTTCATATGGAGAGATGAAGGG 59.928 44.000 14.94 0.00 39.82 3.95
6854 8017 5.990386 CACTGTTCATATGGAGAGATGAAGG 59.010 44.000 14.94 0.00 39.82 3.46
7028 8193 1.821936 CAGTTGGGCTGTTTGGCAA 59.178 52.632 0.00 0.00 43.83 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.