Multiple sequence alignment - TraesCS2B01G249400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G249400 chr2B 100.000 9209 0 0 1 9209 257912181 257902973 0.000000e+00 17006.0
1 TraesCS2B01G249400 chr2B 92.140 687 45 5 1 682 406455713 406455031 0.000000e+00 961.0
2 TraesCS2B01G249400 chr2D 96.492 4960 132 13 847 5782 204134173 204129232 0.000000e+00 8157.0
3 TraesCS2B01G249400 chr2D 92.817 1963 70 31 7264 9209 204127656 204125748 0.000000e+00 2778.0
4 TraesCS2B01G249400 chr2D 97.802 1456 30 1 5813 7266 204129228 204127773 0.000000e+00 2510.0
5 TraesCS2B01G249400 chr2D 95.652 46 2 0 2854 2899 462207842 462207887 3.570000e-09 75.0
6 TraesCS2B01G249400 chr2A 94.971 4136 157 22 1430 5547 233207246 233203144 0.000000e+00 6438.0
7 TraesCS2B01G249400 chr2A 93.617 1974 55 27 7259 9209 233201131 233199206 0.000000e+00 2881.0
8 TraesCS2B01G249400 chr2A 94.090 1489 48 13 5813 7266 233202726 233201243 0.000000e+00 2226.0
9 TraesCS2B01G249400 chr2A 89.065 631 55 10 59 682 614164144 614163521 0.000000e+00 771.0
10 TraesCS2B01G249400 chr2A 94.297 263 12 3 889 1150 233207702 233207442 5.180000e-107 399.0
11 TraesCS2B01G249400 chr2A 90.775 271 6 6 5423 5674 233203143 233202873 2.460000e-90 344.0
12 TraesCS2B01G249400 chr2A 97.826 46 1 0 2854 2899 607487778 607487823 7.670000e-11 80.5
13 TraesCS2B01G249400 chr2A 95.745 47 2 0 2853 2899 610121200 610121154 9.920000e-10 76.8
14 TraesCS2B01G249400 chr2A 90.385 52 5 0 2849 2900 657531713 657531764 1.660000e-07 69.4
15 TraesCS2B01G249400 chr1D 90.216 1063 40 19 8045 9095 464752413 464751403 0.000000e+00 1328.0
16 TraesCS2B01G249400 chr1D 90.643 342 20 6 7670 8009 464752745 464752414 2.360000e-120 444.0
17 TraesCS2B01G249400 chr1B 94.388 695 36 3 1 695 344314045 344313354 0.000000e+00 1064.0
18 TraesCS2B01G249400 chr1B 88.235 153 17 1 692 843 344312700 344312548 2.040000e-41 182.0
19 TraesCS2B01G249400 chr3B 93.966 696 36 6 1 695 207061284 207060594 0.000000e+00 1048.0
20 TraesCS2B01G249400 chr3B 92.950 695 46 3 1 695 29421840 29421149 0.000000e+00 1009.0
21 TraesCS2B01G249400 chr3B 91.111 630 46 6 59 682 527143318 527143943 0.000000e+00 845.0
22 TraesCS2B01G249400 chr7B 93.525 695 39 5 1 695 373789906 373789218 0.000000e+00 1029.0
23 TraesCS2B01G249400 chr7A 89.100 633 53 10 59 682 661152630 661153255 0.000000e+00 773.0
24 TraesCS2B01G249400 chr5D 86.207 580 47 14 109 682 217443999 217444551 1.710000e-166 597.0
25 TraesCS2B01G249400 chr6B 97.826 46 1 0 2854 2899 552401091 552401046 7.670000e-11 80.5
26 TraesCS2B01G249400 chr6B 95.652 46 2 0 2854 2899 652122438 652122393 3.570000e-09 75.0
27 TraesCS2B01G249400 chr3A 100.000 42 0 0 2853 2894 543725051 543725010 2.760000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G249400 chr2B 257902973 257912181 9208 True 17006.000000 17006 100.000000 1 9209 1 chr2B.!!$R1 9208
1 TraesCS2B01G249400 chr2B 406455031 406455713 682 True 961.000000 961 92.140000 1 682 1 chr2B.!!$R2 681
2 TraesCS2B01G249400 chr2D 204125748 204134173 8425 True 4481.666667 8157 95.703667 847 9209 3 chr2D.!!$R1 8362
3 TraesCS2B01G249400 chr2A 233199206 233207702 8496 True 2457.600000 6438 93.550000 889 9209 5 chr2A.!!$R3 8320
4 TraesCS2B01G249400 chr2A 614163521 614164144 623 True 771.000000 771 89.065000 59 682 1 chr2A.!!$R2 623
5 TraesCS2B01G249400 chr1D 464751403 464752745 1342 True 886.000000 1328 90.429500 7670 9095 2 chr1D.!!$R1 1425
6 TraesCS2B01G249400 chr1B 344312548 344314045 1497 True 623.000000 1064 91.311500 1 843 2 chr1B.!!$R1 842
7 TraesCS2B01G249400 chr3B 207060594 207061284 690 True 1048.000000 1048 93.966000 1 695 1 chr3B.!!$R2 694
8 TraesCS2B01G249400 chr3B 29421149 29421840 691 True 1009.000000 1009 92.950000 1 695 1 chr3B.!!$R1 694
9 TraesCS2B01G249400 chr3B 527143318 527143943 625 False 845.000000 845 91.111000 59 682 1 chr3B.!!$F1 623
10 TraesCS2B01G249400 chr7B 373789218 373789906 688 True 1029.000000 1029 93.525000 1 695 1 chr7B.!!$R1 694
11 TraesCS2B01G249400 chr7A 661152630 661153255 625 False 773.000000 773 89.100000 59 682 1 chr7A.!!$F1 623
12 TraesCS2B01G249400 chr5D 217443999 217444551 552 False 597.000000 597 86.207000 109 682 1 chr5D.!!$F1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
765 780 0.035739 TTCCTTTTTCGGTCCGGGAG 59.964 55.0 12.29 4.46 0.00 4.30 F
1378 1434 0.321298 TGCGCCACCTAACCTTTCTC 60.321 55.0 4.18 0.00 0.00 2.87 F
1700 1781 0.668535 CGTGGACGCCTCTATGATCA 59.331 55.0 0.00 0.00 0.00 2.92 F
3060 3143 0.316204 CACCTTGGTACCGTCTCGTT 59.684 55.0 7.57 0.00 0.00 3.85 F
3348 3442 0.815734 GTTAGCGTCCTACAGGCTCA 59.184 55.0 0.00 0.00 42.87 4.26 F
3583 3677 3.173965 TGAGCTTATAGGCCCATCTACC 58.826 50.0 0.00 0.00 0.00 3.18 F
5151 5295 4.467082 AGTTTGCAATTTCCTGCCATATGA 59.533 37.5 3.65 0.00 41.90 2.15 F
5881 6204 0.541998 TCTTCGTTGGAGAGGCCTGA 60.542 55.0 12.00 0.00 37.63 3.86 F
7433 7911 0.323360 TCACCTGTGGCCCATAAAGC 60.323 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 1882 2.042686 TTGAGCTGTTCAAGTGCTGT 57.957 45.000 2.62 0.00 40.82 4.40 R
3060 3143 2.827322 CAAAAATCTGATGTGGAGGGCA 59.173 45.455 0.00 0.00 0.00 5.36 R
3583 3677 0.615331 TCCAGAAAGCTAGCCCACTG 59.385 55.000 12.13 16.69 0.00 3.66 R
4534 4676 0.454957 CAAAACTTCATCCAGCGGCG 60.455 55.000 0.51 0.51 0.00 6.46 R
4918 5062 1.151668 GCATATCAAGCTGGCGGTAG 58.848 55.000 0.00 0.00 0.00 3.18 R
5188 5332 3.315191 TCTTTCGAGCAGGTTTTGAAAGG 59.685 43.478 16.50 5.39 42.46 3.11 R
6523 6854 0.827507 GGCCAAAGACTTTCCAGGCA 60.828 55.000 22.43 0.00 43.72 4.75 R
7567 8048 1.217057 ACACAGCCCCTGGAATGGAT 61.217 55.000 0.00 0.00 35.51 3.41 R
8336 8824 0.107848 GTTAGACCATGACACGGGGG 60.108 60.000 0.00 0.00 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.829507 TTTTGACAAATTTCATCATACAACCTT 57.170 25.926 0.50 0.00 0.00 3.50
47 50 9.461312 ACAACCTTGATAAAAATGTAGCATAGA 57.539 29.630 0.00 0.00 0.00 1.98
170 174 0.530211 GGCAGCACAACATTTGCACA 60.530 50.000 0.00 0.00 42.83 4.57
356 367 7.394359 AGTTGCACAATATAAGAACATTCAGGT 59.606 33.333 0.00 0.00 0.00 4.00
438 450 0.394899 CAAGAAGGGGAGGGCATGAC 60.395 60.000 0.00 0.00 0.00 3.06
449 461 0.461693 GGGCATGACTCTCTGCAGAC 60.462 60.000 13.74 3.41 40.18 3.51
455 467 1.973515 TGACTCTCTGCAGACCAATGT 59.026 47.619 13.74 7.14 0.00 2.71
584 596 0.664166 CAACGGTTTGATGGCAGTGC 60.664 55.000 6.55 6.55 34.24 4.40
653 668 7.665559 ACCTATATTTGCACATTGTATCCGAAT 59.334 33.333 0.00 0.00 0.00 3.34
695 710 6.018994 GTCATCGTATATGTCCTTGGTTGTTC 60.019 42.308 0.00 0.00 0.00 3.18
696 711 4.426416 TCGTATATGTCCTTGGTTGTTCG 58.574 43.478 0.00 0.00 0.00 3.95
697 712 4.158209 TCGTATATGTCCTTGGTTGTTCGA 59.842 41.667 0.00 0.00 0.00 3.71
699 714 6.039605 TCGTATATGTCCTTGGTTGTTCGATA 59.960 38.462 0.00 0.00 0.00 2.92
700 715 6.362551 CGTATATGTCCTTGGTTGTTCGATAG 59.637 42.308 0.00 0.00 0.00 2.08
702 717 1.659098 GTCCTTGGTTGTTCGATAGCG 59.341 52.381 0.00 0.00 39.35 4.26
704 719 1.674817 CCTTGGTTGTTCGATAGCGGT 60.675 52.381 0.00 0.00 38.28 5.68
706 721 2.172851 TGGTTGTTCGATAGCGGTTT 57.827 45.000 0.00 0.00 38.28 3.27
707 722 1.801771 TGGTTGTTCGATAGCGGTTTG 59.198 47.619 0.00 0.00 38.28 2.93
708 723 1.129811 GGTTGTTCGATAGCGGTTTGG 59.870 52.381 0.00 0.00 38.28 3.28
709 724 1.129811 GTTGTTCGATAGCGGTTTGGG 59.870 52.381 0.00 0.00 38.28 4.12
710 725 0.391927 TGTTCGATAGCGGTTTGGGG 60.392 55.000 0.00 0.00 38.28 4.96
711 726 1.450669 TTCGATAGCGGTTTGGGGC 60.451 57.895 0.00 0.00 38.28 5.80
712 727 3.269347 CGATAGCGGTTTGGGGCG 61.269 66.667 0.00 0.00 0.00 6.13
713 728 2.900337 GATAGCGGTTTGGGGCGG 60.900 66.667 0.00 0.00 0.00 6.13
714 729 3.692370 GATAGCGGTTTGGGGCGGT 62.692 63.158 0.00 0.00 0.00 5.68
715 730 3.276642 ATAGCGGTTTGGGGCGGTT 62.277 57.895 0.00 0.00 0.00 4.44
716 731 2.774687 ATAGCGGTTTGGGGCGGTTT 62.775 55.000 0.00 0.00 0.00 3.27
717 732 4.656117 GCGGTTTGGGGCGGTTTG 62.656 66.667 0.00 0.00 0.00 2.93
718 733 3.984749 CGGTTTGGGGCGGTTTGG 61.985 66.667 0.00 0.00 0.00 3.28
719 734 3.621805 GGTTTGGGGCGGTTTGGG 61.622 66.667 0.00 0.00 0.00 4.12
720 735 3.621805 GTTTGGGGCGGTTTGGGG 61.622 66.667 0.00 0.00 0.00 4.96
727 742 4.351938 GCGGTTTGGGGCGGTTTC 62.352 66.667 0.00 0.00 0.00 2.78
728 743 4.032987 CGGTTTGGGGCGGTTTCG 62.033 66.667 0.00 0.00 39.81 3.46
729 744 3.676605 GGTTTGGGGCGGTTTCGG 61.677 66.667 0.00 0.00 36.79 4.30
730 745 3.676605 GTTTGGGGCGGTTTCGGG 61.677 66.667 0.00 0.00 36.79 5.14
747 762 3.894947 GCGTGCGGGTTGTTGGTT 61.895 61.111 0.00 0.00 0.00 3.67
748 763 2.330041 CGTGCGGGTTGTTGGTTC 59.670 61.111 0.00 0.00 0.00 3.62
749 764 2.725641 GTGCGGGTTGTTGGTTCC 59.274 61.111 0.00 0.00 0.00 3.62
750 765 1.826487 GTGCGGGTTGTTGGTTCCT 60.826 57.895 0.00 0.00 0.00 3.36
751 766 1.076632 TGCGGGTTGTTGGTTCCTT 60.077 52.632 0.00 0.00 0.00 3.36
752 767 0.684805 TGCGGGTTGTTGGTTCCTTT 60.685 50.000 0.00 0.00 0.00 3.11
753 768 0.462375 GCGGGTTGTTGGTTCCTTTT 59.538 50.000 0.00 0.00 0.00 2.27
754 769 1.134640 GCGGGTTGTTGGTTCCTTTTT 60.135 47.619 0.00 0.00 0.00 1.94
755 770 2.816689 CGGGTTGTTGGTTCCTTTTTC 58.183 47.619 0.00 0.00 0.00 2.29
756 771 2.796735 CGGGTTGTTGGTTCCTTTTTCG 60.797 50.000 0.00 0.00 0.00 3.46
757 772 2.482316 GGGTTGTTGGTTCCTTTTTCGG 60.482 50.000 0.00 0.00 0.00 4.30
758 773 2.166870 GGTTGTTGGTTCCTTTTTCGGT 59.833 45.455 0.00 0.00 0.00 4.69
759 774 3.441163 GTTGTTGGTTCCTTTTTCGGTC 58.559 45.455 0.00 0.00 0.00 4.79
760 775 2.025898 TGTTGGTTCCTTTTTCGGTCC 58.974 47.619 0.00 0.00 0.00 4.46
761 776 1.002142 GTTGGTTCCTTTTTCGGTCCG 60.002 52.381 4.39 4.39 0.00 4.79
762 777 0.535553 TGGTTCCTTTTTCGGTCCGG 60.536 55.000 12.29 0.00 0.00 5.14
763 778 1.239296 GGTTCCTTTTTCGGTCCGGG 61.239 60.000 12.29 4.15 0.00 5.73
764 779 0.250424 GTTCCTTTTTCGGTCCGGGA 60.250 55.000 12.29 6.78 0.00 5.14
765 780 0.035739 TTCCTTTTTCGGTCCGGGAG 59.964 55.000 12.29 4.46 0.00 4.30
777 792 4.639726 CGGGAGGGGGACATGATA 57.360 61.111 0.00 0.00 0.00 2.15
778 793 2.366469 CGGGAGGGGGACATGATAG 58.634 63.158 0.00 0.00 0.00 2.08
779 794 0.471971 CGGGAGGGGGACATGATAGT 60.472 60.000 0.00 0.00 0.00 2.12
780 795 1.821088 GGGAGGGGGACATGATAGTT 58.179 55.000 0.00 0.00 0.00 2.24
781 796 2.136026 GGGAGGGGGACATGATAGTTT 58.864 52.381 0.00 0.00 0.00 2.66
782 797 2.106684 GGGAGGGGGACATGATAGTTTC 59.893 54.545 0.00 0.00 0.00 2.78
783 798 2.106684 GGAGGGGGACATGATAGTTTCC 59.893 54.545 0.00 0.00 0.00 3.13
784 799 3.049344 GAGGGGGACATGATAGTTTCCT 58.951 50.000 0.00 0.00 0.00 3.36
785 800 3.459969 GAGGGGGACATGATAGTTTCCTT 59.540 47.826 0.00 0.00 0.00 3.36
786 801 3.858638 AGGGGGACATGATAGTTTCCTTT 59.141 43.478 0.00 0.00 0.00 3.11
787 802 3.954258 GGGGGACATGATAGTTTCCTTTG 59.046 47.826 0.00 0.00 0.00 2.77
788 803 4.569865 GGGGGACATGATAGTTTCCTTTGT 60.570 45.833 0.00 0.00 0.00 2.83
789 804 5.339695 GGGGGACATGATAGTTTCCTTTGTA 60.340 44.000 0.00 0.00 0.00 2.41
790 805 5.823045 GGGGACATGATAGTTTCCTTTGTAG 59.177 44.000 0.00 0.00 0.00 2.74
791 806 5.823045 GGGACATGATAGTTTCCTTTGTAGG 59.177 44.000 0.00 0.00 43.46 3.18
792 807 6.415573 GGACATGATAGTTTCCTTTGTAGGT 58.584 40.000 0.00 0.00 42.60 3.08
793 808 6.316390 GGACATGATAGTTTCCTTTGTAGGTG 59.684 42.308 0.00 0.00 42.60 4.00
794 809 6.180472 ACATGATAGTTTCCTTTGTAGGTGG 58.820 40.000 0.00 0.00 42.60 4.61
795 810 6.012858 ACATGATAGTTTCCTTTGTAGGTGGA 60.013 38.462 0.00 0.00 42.60 4.02
796 811 6.636454 TGATAGTTTCCTTTGTAGGTGGAT 57.364 37.500 0.00 0.00 42.60 3.41
797 812 7.743116 TGATAGTTTCCTTTGTAGGTGGATA 57.257 36.000 0.00 0.00 42.60 2.59
798 813 7.562135 TGATAGTTTCCTTTGTAGGTGGATAC 58.438 38.462 0.00 0.00 42.60 2.24
799 814 7.402071 TGATAGTTTCCTTTGTAGGTGGATACT 59.598 37.037 0.00 0.00 42.10 2.12
800 815 5.805728 AGTTTCCTTTGTAGGTGGATACTG 58.194 41.667 0.00 0.00 39.48 2.74
801 816 4.837093 TTCCTTTGTAGGTGGATACTGG 57.163 45.455 0.00 0.00 42.60 4.00
802 817 3.798515 TCCTTTGTAGGTGGATACTGGT 58.201 45.455 0.00 0.00 42.60 4.00
803 818 4.172807 TCCTTTGTAGGTGGATACTGGTT 58.827 43.478 0.00 0.00 42.60 3.67
804 819 5.343715 TCCTTTGTAGGTGGATACTGGTTA 58.656 41.667 0.00 0.00 42.60 2.85
805 820 5.424252 TCCTTTGTAGGTGGATACTGGTTAG 59.576 44.000 0.00 0.00 42.60 2.34
806 821 5.396436 CCTTTGTAGGTGGATACTGGTTAGG 60.396 48.000 0.00 0.00 36.74 2.69
807 822 3.649843 TGTAGGTGGATACTGGTTAGGG 58.350 50.000 0.00 0.00 37.61 3.53
808 823 3.272818 TGTAGGTGGATACTGGTTAGGGA 59.727 47.826 0.00 0.00 37.61 4.20
809 824 3.726837 AGGTGGATACTGGTTAGGGAT 57.273 47.619 0.00 0.00 37.61 3.85
810 825 3.588569 AGGTGGATACTGGTTAGGGATC 58.411 50.000 0.00 0.00 37.61 3.36
811 826 2.638363 GGTGGATACTGGTTAGGGATCC 59.362 54.545 1.92 1.92 39.35 3.36
812 827 2.638363 GTGGATACTGGTTAGGGATCCC 59.362 54.545 24.59 24.59 38.69 3.85
813 828 2.251605 TGGATACTGGTTAGGGATCCCA 59.748 50.000 32.69 15.77 38.69 4.37
816 831 2.544768 CTGGTTAGGGATCCCAGGG 58.455 63.158 32.69 12.00 41.69 4.45
817 832 1.696314 TGGTTAGGGATCCCAGGGC 60.696 63.158 32.69 18.10 38.92 5.19
818 833 2.819284 GGTTAGGGATCCCAGGGCG 61.819 68.421 32.69 0.00 38.92 6.13
819 834 2.447765 TTAGGGATCCCAGGGCGG 60.448 66.667 32.69 0.00 38.92 6.13
844 859 3.072468 CCCCCTAGACGCGTCCAA 61.072 66.667 34.08 21.97 0.00 3.53
845 860 2.494918 CCCCTAGACGCGTCCAAG 59.505 66.667 34.08 28.82 0.00 3.61
877 892 0.391661 GTGCGCTCTCAATTCCCTCA 60.392 55.000 9.73 0.00 0.00 3.86
887 902 6.404513 GCTCTCAATTCCCTCAAATCAAAGAG 60.405 42.308 0.00 0.00 0.00 2.85
925 940 2.401720 GTGCGCTCTCAAAATTCAAACG 59.598 45.455 9.73 0.00 0.00 3.60
933 948 7.496584 GCTCTCAAAATTCAAACGAAATCTTG 58.503 34.615 0.00 0.00 0.00 3.02
1009 1027 4.856801 CGCCGGGGATGGTTCTGG 62.857 72.222 14.46 0.00 0.00 3.86
1133 1151 2.923634 TACCTCAGGTAGCGCCCTCC 62.924 65.000 2.29 4.11 37.09 4.30
1257 1313 1.134371 CCTCCTAACTGCTTAGGTGCC 60.134 57.143 10.64 0.00 46.74 5.01
1271 1327 6.493458 TGCTTAGGTGCCTTTTTCTTTCTTAT 59.507 34.615 0.00 0.00 0.00 1.73
1272 1328 7.668052 TGCTTAGGTGCCTTTTTCTTTCTTATA 59.332 33.333 0.00 0.00 0.00 0.98
1313 1369 1.153147 GGATGAACCTCCCGGCTTC 60.153 63.158 0.00 0.00 35.41 3.86
1369 1425 2.122783 AATTTAGCTTGCGCCACCTA 57.877 45.000 4.18 0.00 36.60 3.08
1376 1432 0.521735 CTTGCGCCACCTAACCTTTC 59.478 55.000 4.18 0.00 0.00 2.62
1378 1434 0.321298 TGCGCCACCTAACCTTTCTC 60.321 55.000 4.18 0.00 0.00 2.87
1384 1440 3.691609 GCCACCTAACCTTTCTCATTCTG 59.308 47.826 0.00 0.00 0.00 3.02
1414 1470 7.588143 ATTTGCTAATCTGTAGATATGCGAC 57.412 36.000 11.59 0.00 36.42 5.19
1415 1471 5.705609 TGCTAATCTGTAGATATGCGACA 57.294 39.130 11.59 0.00 36.42 4.35
1613 1685 9.353431 ACAATTGGTATTAATGCAGATGATGTA 57.647 29.630 10.83 0.00 0.00 2.29
1700 1781 0.668535 CGTGGACGCCTCTATGATCA 59.331 55.000 0.00 0.00 0.00 2.92
1729 1810 6.946340 TCTGTGTGCTATTTTCTTATCTCCA 58.054 36.000 0.00 0.00 0.00 3.86
1801 1882 4.460263 GGCACACCCAGAATGTTATCATA 58.540 43.478 0.00 0.00 33.49 2.15
1917 1998 9.836179 AAGATCTGGATCCTCTATGTAACTTAT 57.164 33.333 14.23 0.00 38.58 1.73
1958 2040 4.077108 TGCTGATGTCATCTTTCTGCTTT 58.923 39.130 13.90 0.00 0.00 3.51
2176 2258 8.044908 TGGTATTTCCAGGTTAGAGTTGATAAC 58.955 37.037 0.00 0.00 41.93 1.89
2368 2450 4.096382 CACAGGTATGAAAGCCACATAACC 59.904 45.833 0.00 0.00 38.30 2.85
2373 2455 3.134574 TGAAAGCCACATAACCGAGTT 57.865 42.857 0.00 0.00 0.00 3.01
2406 2488 1.285667 TCATGTACTCCCTCCGTACCA 59.714 52.381 0.00 0.00 37.11 3.25
2411 2493 3.583966 TGTACTCCCTCCGTACCAAAATT 59.416 43.478 0.00 0.00 37.11 1.82
2431 2513 5.813080 ATTTATGACGTTTTGGTAGGCTC 57.187 39.130 0.00 0.00 0.00 4.70
2662 2744 3.443329 ACTGTTCAGCAAACACATGTTGA 59.557 39.130 0.00 0.00 42.95 3.18
2894 2976 4.267349 ACTTGTCGCTGGTTTAGTACAT 57.733 40.909 0.00 0.00 0.00 2.29
2969 3051 8.812329 GTCTTCCATAATTCGATATGCTATGTC 58.188 37.037 1.20 0.00 32.93 3.06
3060 3143 0.316204 CACCTTGGTACCGTCTCGTT 59.684 55.000 7.57 0.00 0.00 3.85
3121 3204 1.859302 TGAGAGAGAGGAAGAAGCCC 58.141 55.000 0.00 0.00 0.00 5.19
3269 3363 5.991606 GCCTATGTAAGATACAGTGCATTGA 59.008 40.000 16.98 0.00 42.77 2.57
3276 3370 7.654923 TGTAAGATACAGTGCATTGAGATGATC 59.345 37.037 16.98 9.66 33.19 2.92
3285 3379 7.117092 CAGTGCATTGAGATGATCAGAATCTAG 59.883 40.741 2.46 0.00 39.68 2.43
3348 3442 0.815734 GTTAGCGTCCTACAGGCTCA 59.184 55.000 0.00 0.00 42.87 4.26
3453 3547 4.769345 CCTTCTAGAGGGAAGCTGAAAT 57.231 45.455 15.78 0.00 42.26 2.17
3583 3677 3.173965 TGAGCTTATAGGCCCATCTACC 58.826 50.000 0.00 0.00 0.00 3.18
3961 4055 5.583854 GGCTTGTATATATCCACAGCATCTG 59.416 44.000 11.59 0.00 37.52 2.90
4158 4300 4.649218 ACATCCTGGTGGGTAATTAATTGC 59.351 41.667 11.05 9.30 36.25 3.56
4563 4707 7.307751 CGCTGGATGAAGTTTTGTTTTCTACTA 60.308 37.037 0.00 0.00 0.00 1.82
4839 4983 4.819630 CAGTTGTCTTAGTAAAACCTGCCA 59.180 41.667 0.00 0.00 0.00 4.92
4918 5062 6.405538 TGCATTTCCTTGGGAATTTTACATC 58.594 36.000 0.00 0.00 41.71 3.06
5061 5205 6.052840 ACGATGCTCACATGTCAAATAATC 57.947 37.500 0.00 0.00 36.35 1.75
5151 5295 4.467082 AGTTTGCAATTTCCTGCCATATGA 59.533 37.500 3.65 0.00 41.90 2.15
5180 5324 5.670792 TCTGGTAATTCCTTCGTATGTGT 57.329 39.130 0.00 0.00 37.07 3.72
5188 5332 4.119442 TCCTTCGTATGTGTAGAAAGCC 57.881 45.455 0.00 0.00 0.00 4.35
5266 5410 7.093727 TGTTGCCCAGATATATCTCTAGCTAAC 60.094 40.741 20.61 20.31 34.22 2.34
5275 5419 8.671987 ATATATCTCTAGCTAACCCATGTTGT 57.328 34.615 0.00 0.00 35.87 3.32
5460 5729 4.292186 ACCTGACAATATGCTTGTCTGT 57.708 40.909 15.76 11.08 46.53 3.41
5754 6077 3.254166 AGCTAGGCACAACAAACAAGATG 59.746 43.478 0.00 0.00 0.00 2.90
5782 6105 8.721133 AAGGTAAAGTAAATCAACCAAAGGAT 57.279 30.769 0.00 0.00 32.43 3.24
5783 6106 9.816787 AAGGTAAAGTAAATCAACCAAAGGATA 57.183 29.630 0.00 0.00 32.43 2.59
5784 6107 9.239551 AGGTAAAGTAAATCAACCAAAGGATAC 57.760 33.333 0.00 0.00 32.43 2.24
5785 6108 8.464404 GGTAAAGTAAATCAACCAAAGGATACC 58.536 37.037 0.00 0.00 37.17 2.73
5786 6109 7.476540 AAAGTAAATCAACCAAAGGATACCC 57.523 36.000 0.00 0.00 37.17 3.69
5787 6110 5.516044 AGTAAATCAACCAAAGGATACCCC 58.484 41.667 0.00 0.00 37.17 4.95
5788 6111 3.398318 AATCAACCAAAGGATACCCCC 57.602 47.619 0.00 0.00 34.66 5.40
5789 6112 1.761711 TCAACCAAAGGATACCCCCA 58.238 50.000 0.00 0.00 34.66 4.96
5790 6113 2.074579 TCAACCAAAGGATACCCCCAA 58.925 47.619 0.00 0.00 34.66 4.12
5791 6114 2.042433 TCAACCAAAGGATACCCCCAAG 59.958 50.000 0.00 0.00 34.66 3.61
5792 6115 1.007607 ACCAAAGGATACCCCCAAGG 58.992 55.000 0.00 0.00 43.78 3.61
5793 6116 1.304891 CCAAAGGATACCCCCAAGGA 58.695 55.000 0.00 0.00 39.89 3.36
5794 6117 1.859574 CCAAAGGATACCCCCAAGGAT 59.140 52.381 0.00 0.00 39.89 3.24
5795 6118 2.247372 CCAAAGGATACCCCCAAGGATT 59.753 50.000 0.00 0.00 39.89 3.01
5796 6119 3.566351 CAAAGGATACCCCCAAGGATTC 58.434 50.000 0.00 0.00 39.89 2.52
5797 6120 1.435256 AGGATACCCCCAAGGATTCG 58.565 55.000 0.00 0.00 39.89 3.34
5798 6121 1.137697 GGATACCCCCAAGGATTCGT 58.862 55.000 0.00 0.00 39.89 3.85
5799 6122 2.090380 AGGATACCCCCAAGGATTCGTA 60.090 50.000 0.00 0.00 39.89 3.43
5800 6123 2.038164 GGATACCCCCAAGGATTCGTAC 59.962 54.545 0.00 0.00 39.89 3.67
5801 6124 2.250921 TACCCCCAAGGATTCGTACA 57.749 50.000 0.00 0.00 39.89 2.90
5802 6125 1.364269 ACCCCCAAGGATTCGTACAA 58.636 50.000 0.00 0.00 39.89 2.41
5803 6126 1.920351 ACCCCCAAGGATTCGTACAAT 59.080 47.619 0.00 0.00 39.89 2.71
5804 6127 3.116959 ACCCCCAAGGATTCGTACAATA 58.883 45.455 0.00 0.00 39.89 1.90
5805 6128 3.118149 ACCCCCAAGGATTCGTACAATAC 60.118 47.826 0.00 0.00 39.89 1.89
5806 6129 3.473625 CCCCAAGGATTCGTACAATACC 58.526 50.000 0.00 0.00 33.47 2.73
5807 6130 3.473625 CCCAAGGATTCGTACAATACCC 58.526 50.000 0.00 0.00 0.00 3.69
5808 6131 3.473625 CCAAGGATTCGTACAATACCCC 58.526 50.000 0.00 0.00 0.00 4.95
5809 6132 3.473625 CAAGGATTCGTACAATACCCCC 58.526 50.000 0.00 0.00 0.00 5.40
5810 6133 2.766736 AGGATTCGTACAATACCCCCA 58.233 47.619 0.00 0.00 0.00 4.96
5811 6134 3.116959 AGGATTCGTACAATACCCCCAA 58.883 45.455 0.00 0.00 0.00 4.12
5881 6204 0.541998 TCTTCGTTGGAGAGGCCTGA 60.542 55.000 12.00 0.00 37.63 3.86
5980 6311 2.702478 TGGATGATCTTGAGGCGATCTT 59.298 45.455 0.00 0.00 38.43 2.40
6157 6488 6.285224 TCTCTCAAATCTACTCTCGTCCTAG 58.715 44.000 0.00 0.00 0.00 3.02
6292 6623 3.555586 GCCGGTTACACATTCGGGTATAT 60.556 47.826 1.90 0.00 42.43 0.86
6745 7077 1.068741 CTTAGGGCGTGTAGATGTCCC 59.931 57.143 0.00 1.55 32.60 4.46
6817 7149 6.377146 GGGCAGATCCTGTATTCTTGTTTTTA 59.623 38.462 0.00 0.00 33.43 1.52
6882 7240 0.605319 TTGCACCGATCAACCACCTC 60.605 55.000 0.00 0.00 0.00 3.85
6957 7315 8.395940 TGTACAAATCGTTTTAAAACACCTTG 57.604 30.769 26.24 23.86 38.81 3.61
6979 7337 2.481952 GGTGATGTTGTGACTCTTCTGC 59.518 50.000 0.00 0.00 0.00 4.26
7050 7408 4.398988 TGCCAGATGTTATTGCAACTAAGG 59.601 41.667 0.00 0.00 0.00 2.69
7055 7413 5.648092 AGATGTTATTGCAACTAAGGACCAC 59.352 40.000 0.00 0.00 0.00 4.16
7296 7773 1.075212 TCACCCAGACCATTTCATGCA 59.925 47.619 0.00 0.00 0.00 3.96
7326 7804 4.808558 TGAAGAAAGTAAACATGCATGCC 58.191 39.130 26.53 11.82 0.00 4.40
7329 7807 3.828451 AGAAAGTAAACATGCATGCCTGT 59.172 39.130 26.53 21.21 0.00 4.00
7345 7823 6.128742 GCATGCCTGTTTCTCAACTTATTTTG 60.129 38.462 6.36 0.00 33.58 2.44
7347 7825 4.382754 GCCTGTTTCTCAACTTATTTTGCG 59.617 41.667 0.00 0.00 33.58 4.85
7372 7850 4.962155 AGTTGCTAGTTCAGTTTGTAGCT 58.038 39.130 0.00 0.00 38.96 3.32
7388 7866 4.439057 TGTAGCTCTTGTCAACTCGTTTT 58.561 39.130 0.00 0.00 0.00 2.43
7389 7867 4.873827 TGTAGCTCTTGTCAACTCGTTTTT 59.126 37.500 0.00 0.00 0.00 1.94
7433 7911 0.323360 TCACCTGTGGCCCATAAAGC 60.323 55.000 0.00 0.00 0.00 3.51
7460 7938 4.527944 AGATCACAGACGATACCTTCAGA 58.472 43.478 0.00 0.00 0.00 3.27
7496 7974 2.224281 CGGGCAGAATCAGGTTAGCATA 60.224 50.000 0.00 0.00 0.00 3.14
7505 7983 8.504815 CAGAATCAGGTTAGCATATGAATTCAG 58.495 37.037 14.54 1.48 0.00 3.02
7510 7988 8.874156 TCAGGTTAGCATATGAATTCAGAGTAT 58.126 33.333 14.54 4.37 0.00 2.12
7534 8012 5.930135 TCTTGATTTAGAGGTATTGGAGGC 58.070 41.667 0.00 0.00 0.00 4.70
7535 8013 5.667626 TCTTGATTTAGAGGTATTGGAGGCT 59.332 40.000 0.00 0.00 0.00 4.58
7536 8014 5.975988 TGATTTAGAGGTATTGGAGGCTT 57.024 39.130 0.00 0.00 0.00 4.35
7537 8015 5.684704 TGATTTAGAGGTATTGGAGGCTTG 58.315 41.667 0.00 0.00 0.00 4.01
7538 8016 5.191722 TGATTTAGAGGTATTGGAGGCTTGT 59.808 40.000 0.00 0.00 0.00 3.16
7539 8017 6.385759 TGATTTAGAGGTATTGGAGGCTTGTA 59.614 38.462 0.00 0.00 0.00 2.41
7540 8018 5.871396 TTAGAGGTATTGGAGGCTTGTAG 57.129 43.478 0.00 0.00 0.00 2.74
7541 8019 2.436173 AGAGGTATTGGAGGCTTGTAGC 59.564 50.000 0.00 0.00 41.46 3.58
7631 8112 2.842496 TGATGTGAATCTCTTCCCAGCT 59.158 45.455 0.00 0.00 28.24 4.24
7644 8125 2.345244 CAGCTGGCACGGAGTTCT 59.655 61.111 5.57 0.00 41.61 3.01
7892 8375 2.114411 GCCCGGAACAGGTGGAAA 59.886 61.111 0.73 0.00 0.00 3.13
8079 8563 2.677228 CTGAACCCGGGCTCCAAT 59.323 61.111 24.08 0.00 0.00 3.16
8157 8641 1.089920 GCAACTATCAGCTGGTGGTG 58.910 55.000 17.55 14.72 42.54 4.17
8258 8745 7.148222 GCCTCTGCGATATTTATCTACTCTACA 60.148 40.741 0.00 0.00 0.00 2.74
8259 8746 8.178964 CCTCTGCGATATTTATCTACTCTACAC 58.821 40.741 0.00 0.00 0.00 2.90
8261 8748 8.722394 TCTGCGATATTTATCTACTCTACACTG 58.278 37.037 0.00 0.00 0.00 3.66
8262 8749 7.306213 TGCGATATTTATCTACTCTACACTGC 58.694 38.462 0.00 0.00 0.00 4.40
8263 8750 6.748198 GCGATATTTATCTACTCTACACTGCC 59.252 42.308 0.00 0.00 0.00 4.85
8264 8751 7.362229 GCGATATTTATCTACTCTACACTGCCT 60.362 40.741 0.00 0.00 0.00 4.75
8265 8752 8.178964 CGATATTTATCTACTCTACACTGCCTC 58.821 40.741 0.00 0.00 0.00 4.70
8266 8753 6.658188 ATTTATCTACTCTACACTGCCTCC 57.342 41.667 0.00 0.00 0.00 4.30
8267 8754 2.438800 TCTACTCTACACTGCCTCCC 57.561 55.000 0.00 0.00 0.00 4.30
8268 8755 1.923850 TCTACTCTACACTGCCTCCCT 59.076 52.381 0.00 0.00 0.00 4.20
8269 8756 3.120898 TCTACTCTACACTGCCTCCCTA 58.879 50.000 0.00 0.00 0.00 3.53
8270 8757 3.722627 TCTACTCTACACTGCCTCCCTAT 59.277 47.826 0.00 0.00 0.00 2.57
8271 8758 2.672098 ACTCTACACTGCCTCCCTATG 58.328 52.381 0.00 0.00 0.00 2.23
8272 8759 2.023888 ACTCTACACTGCCTCCCTATGT 60.024 50.000 0.00 0.00 0.00 2.29
8288 8775 7.015682 CCTCCCTATGTCTATGTATGTGTCTTT 59.984 40.741 0.00 0.00 0.00 2.52
8336 8824 7.975866 ATCATCTGAAAATGAAAATACACGC 57.024 32.000 0.00 0.00 39.04 5.34
8337 8825 6.321717 TCATCTGAAAATGAAAATACACGCC 58.678 36.000 0.00 0.00 32.80 5.68
8410 8913 7.061905 CCAAATAGTTACCGTCTTAGATATGCG 59.938 40.741 0.00 0.00 0.00 4.73
8411 8914 6.814506 ATAGTTACCGTCTTAGATATGCGT 57.185 37.500 0.00 0.00 0.00 5.24
8412 8915 7.912056 ATAGTTACCGTCTTAGATATGCGTA 57.088 36.000 0.00 0.00 0.00 4.42
8413 8916 5.995055 AGTTACCGTCTTAGATATGCGTAC 58.005 41.667 0.00 0.00 0.00 3.67
8414 8917 5.528690 AGTTACCGTCTTAGATATGCGTACA 59.471 40.000 0.00 0.00 0.00 2.90
8415 8918 4.485024 ACCGTCTTAGATATGCGTACAG 57.515 45.455 0.00 0.00 0.00 2.74
8442 8945 3.056749 ACAGGTAGGACAAACGAGATGAC 60.057 47.826 0.00 0.00 0.00 3.06
8501 9004 1.788229 CCCAACCAAAGTCAAAGGGT 58.212 50.000 0.00 0.00 34.43 4.34
8570 9075 4.079253 ACGTTTTTGCTAGGACCATCAAT 58.921 39.130 0.00 0.00 0.00 2.57
8574 9079 5.389859 TTTTGCTAGGACCATCAATGTTG 57.610 39.130 0.00 0.00 0.00 3.33
8875 9386 0.866427 CATCGCATGCAGGATCTGAC 59.134 55.000 19.57 0.00 32.44 3.51
8887 9398 0.177604 GATCTGACTGAGTGCCCTGG 59.822 60.000 0.00 0.00 0.00 4.45
8888 9399 0.546267 ATCTGACTGAGTGCCCTGGT 60.546 55.000 0.00 0.00 0.00 4.00
8889 9400 1.188219 TCTGACTGAGTGCCCTGGTC 61.188 60.000 0.00 0.00 0.00 4.02
8890 9401 2.177594 CTGACTGAGTGCCCTGGTCC 62.178 65.000 0.00 0.00 0.00 4.46
8891 9402 1.915769 GACTGAGTGCCCTGGTCCT 60.916 63.158 0.00 0.00 0.00 3.85
8892 9403 2.177594 GACTGAGTGCCCTGGTCCTG 62.178 65.000 0.00 0.00 0.00 3.86
9103 9614 1.898574 CCCGGTTATGGCATGCCTC 60.899 63.158 35.53 21.92 36.94 4.70
9119 9630 6.102663 GCATGCCTCTACCTGTATATACAAG 58.897 44.000 16.17 12.76 35.50 3.16
9121 9632 6.896021 TGCCTCTACCTGTATATACAAGAC 57.104 41.667 16.69 5.00 35.50 3.01
9131 9642 9.326413 ACCTGTATATACAAGACAATTGTAAGC 57.674 33.333 16.69 0.00 38.26 3.09
9136 9647 6.743575 ATACAAGACAATTGTAAGCAGACC 57.256 37.500 11.95 0.00 38.26 3.85
9137 9648 3.498397 ACAAGACAATTGTAAGCAGACCG 59.502 43.478 11.95 0.00 0.00 4.79
9138 9649 3.402628 AGACAATTGTAAGCAGACCGT 57.597 42.857 11.95 0.00 0.00 4.83
9139 9650 3.740115 AGACAATTGTAAGCAGACCGTT 58.260 40.909 11.95 0.00 0.00 4.44
9140 9651 3.498397 AGACAATTGTAAGCAGACCGTTG 59.502 43.478 11.95 0.00 0.00 4.10
9141 9652 3.211045 ACAATTGTAAGCAGACCGTTGT 58.789 40.909 9.97 0.00 0.00 3.32
9142 9653 3.003275 ACAATTGTAAGCAGACCGTTGTG 59.997 43.478 9.97 0.00 29.82 3.33
9166 9677 1.492599 GGACCCGGAGTAGTACTAGGT 59.507 57.143 15.60 15.60 31.30 3.08
9189 9701 9.322773 AGGTTTTAACTACTTGAGAGTTTACAC 57.677 33.333 0.00 0.00 38.16 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.955388 TGCAACTTCTATGCTACATTTTTATCA 58.045 29.630 0.00 0.00 44.14 2.15
33 35 6.573664 TGTGCAACTTCTATGCTACATTTT 57.426 33.333 0.00 0.00 44.14 1.82
47 50 6.488817 GCAAATTCTGAAAAATGTGCAACTT 58.511 32.000 6.85 0.00 45.39 2.66
115 119 4.155709 TGTCAAGAGGCTATATCTGGAGG 58.844 47.826 0.00 0.00 27.10 4.30
170 174 7.981225 AGTTTGTGCAATTCTATGACACTTTTT 59.019 29.630 0.00 0.00 32.34 1.94
438 450 3.931468 CACTTACATTGGTCTGCAGAGAG 59.069 47.826 18.89 7.90 0.00 3.20
449 461 7.087409 TGCTTCATATGTTCACTTACATTGG 57.913 36.000 1.90 0.00 39.39 3.16
455 467 6.595326 CAGACCTTGCTTCATATGTTCACTTA 59.405 38.462 1.90 0.00 0.00 2.24
548 560 6.569179 ACCGTTGTTCTAACTATGCAAATT 57.431 33.333 0.00 0.00 0.00 1.82
584 596 3.624326 TGCCTTCACAAATCTGAAACG 57.376 42.857 0.00 0.00 29.66 3.60
695 710 3.269347 CGCCCCAAACCGCTATCG 61.269 66.667 0.00 0.00 0.00 2.92
696 711 2.900337 CCGCCCCAAACCGCTATC 60.900 66.667 0.00 0.00 0.00 2.08
697 712 2.774687 AAACCGCCCCAAACCGCTAT 62.775 55.000 0.00 0.00 0.00 2.97
699 714 4.906537 AAACCGCCCCAAACCGCT 62.907 61.111 0.00 0.00 0.00 5.52
700 715 4.656117 CAAACCGCCCCAAACCGC 62.656 66.667 0.00 0.00 0.00 5.68
702 717 3.621805 CCCAAACCGCCCCAAACC 61.622 66.667 0.00 0.00 0.00 3.27
710 725 4.351938 GAAACCGCCCCAAACCGC 62.352 66.667 0.00 0.00 0.00 5.68
711 726 4.032987 CGAAACCGCCCCAAACCG 62.033 66.667 0.00 0.00 0.00 4.44
712 727 3.676605 CCGAAACCGCCCCAAACC 61.677 66.667 0.00 0.00 0.00 3.27
713 728 3.676605 CCCGAAACCGCCCCAAAC 61.677 66.667 0.00 0.00 0.00 2.93
730 745 3.817274 GAACCAACAACCCGCACGC 62.817 63.158 0.00 0.00 0.00 5.34
731 746 2.330041 GAACCAACAACCCGCACG 59.670 61.111 0.00 0.00 0.00 5.34
732 747 1.388837 AAGGAACCAACAACCCGCAC 61.389 55.000 0.00 0.00 0.00 5.34
733 748 0.684805 AAAGGAACCAACAACCCGCA 60.685 50.000 0.00 0.00 0.00 5.69
734 749 0.462375 AAAAGGAACCAACAACCCGC 59.538 50.000 0.00 0.00 0.00 6.13
735 750 2.796735 CGAAAAAGGAACCAACAACCCG 60.797 50.000 0.00 0.00 0.00 5.28
736 751 2.482316 CCGAAAAAGGAACCAACAACCC 60.482 50.000 0.00 0.00 0.00 4.11
737 752 2.166870 ACCGAAAAAGGAACCAACAACC 59.833 45.455 0.00 0.00 34.73 3.77
738 753 3.441163 GACCGAAAAAGGAACCAACAAC 58.559 45.455 0.00 0.00 34.73 3.32
739 754 2.427812 GGACCGAAAAAGGAACCAACAA 59.572 45.455 0.00 0.00 33.92 2.83
740 755 2.025898 GGACCGAAAAAGGAACCAACA 58.974 47.619 0.00 0.00 33.92 3.33
741 756 1.002142 CGGACCGAAAAAGGAACCAAC 60.002 52.381 8.64 0.00 33.58 3.77
742 757 1.310904 CGGACCGAAAAAGGAACCAA 58.689 50.000 8.64 0.00 33.58 3.67
743 758 0.535553 CCGGACCGAAAAAGGAACCA 60.536 55.000 17.49 0.00 33.58 3.67
744 759 1.239296 CCCGGACCGAAAAAGGAACC 61.239 60.000 17.49 0.00 34.73 3.62
745 760 0.250424 TCCCGGACCGAAAAAGGAAC 60.250 55.000 17.49 0.00 34.73 3.62
746 761 0.035739 CTCCCGGACCGAAAAAGGAA 59.964 55.000 17.49 0.00 34.73 3.36
747 762 1.675219 CTCCCGGACCGAAAAAGGA 59.325 57.895 17.49 12.05 34.73 3.36
748 763 1.376812 CCTCCCGGACCGAAAAAGG 60.377 63.158 17.49 12.00 37.30 3.11
749 764 1.376812 CCCTCCCGGACCGAAAAAG 60.377 63.158 17.49 6.63 0.00 2.27
750 765 2.751688 CCCTCCCGGACCGAAAAA 59.248 61.111 17.49 0.00 0.00 1.94
751 766 3.324108 CCCCTCCCGGACCGAAAA 61.324 66.667 17.49 0.00 0.00 2.29
758 773 1.670925 TATCATGTCCCCCTCCCGGA 61.671 60.000 0.73 0.00 0.00 5.14
759 774 1.152118 TATCATGTCCCCCTCCCGG 60.152 63.158 0.00 0.00 0.00 5.73
760 775 0.471971 ACTATCATGTCCCCCTCCCG 60.472 60.000 0.00 0.00 0.00 5.14
761 776 1.821088 AACTATCATGTCCCCCTCCC 58.179 55.000 0.00 0.00 0.00 4.30
762 777 2.106684 GGAAACTATCATGTCCCCCTCC 59.893 54.545 0.00 0.00 0.00 4.30
763 778 3.049344 AGGAAACTATCATGTCCCCCTC 58.951 50.000 0.00 0.00 40.61 4.30
764 779 3.151542 AGGAAACTATCATGTCCCCCT 57.848 47.619 0.00 0.00 40.61 4.79
765 780 3.953542 AAGGAAACTATCATGTCCCCC 57.046 47.619 0.00 0.00 42.68 5.40
766 781 4.600062 ACAAAGGAAACTATCATGTCCCC 58.400 43.478 0.00 0.00 42.68 4.81
767 782 6.927294 CTACAAAGGAAACTATCATGTCCC 57.073 41.667 0.00 0.00 42.68 4.46
783 798 5.396436 CCCTAACCAGTATCCACCTACAAAG 60.396 48.000 0.00 0.00 0.00 2.77
784 799 4.472108 CCCTAACCAGTATCCACCTACAAA 59.528 45.833 0.00 0.00 0.00 2.83
785 800 4.035112 CCCTAACCAGTATCCACCTACAA 58.965 47.826 0.00 0.00 0.00 2.41
786 801 3.272818 TCCCTAACCAGTATCCACCTACA 59.727 47.826 0.00 0.00 0.00 2.74
787 802 3.919834 TCCCTAACCAGTATCCACCTAC 58.080 50.000 0.00 0.00 0.00 3.18
788 803 4.450265 GGATCCCTAACCAGTATCCACCTA 60.450 50.000 0.00 0.00 34.63 3.08
789 804 3.588569 GATCCCTAACCAGTATCCACCT 58.411 50.000 0.00 0.00 0.00 4.00
790 805 2.638363 GGATCCCTAACCAGTATCCACC 59.362 54.545 0.00 0.00 34.63 4.61
791 806 2.638363 GGGATCCCTAACCAGTATCCAC 59.362 54.545 24.69 0.00 35.52 4.02
792 807 2.251605 TGGGATCCCTAACCAGTATCCA 59.748 50.000 31.05 3.21 35.52 3.41
793 808 2.907042 CTGGGATCCCTAACCAGTATCC 59.093 54.545 31.05 0.39 45.21 2.59
799 814 1.696314 GCCCTGGGATCCCTAACCA 60.696 63.158 31.05 10.05 36.94 3.67
800 815 2.819284 CGCCCTGGGATCCCTAACC 61.819 68.421 31.05 15.67 36.94 2.85
801 816 2.819284 CCGCCCTGGGATCCCTAAC 61.819 68.421 31.05 16.47 36.94 2.34
802 817 2.447765 CCGCCCTGGGATCCCTAA 60.448 66.667 31.05 11.64 36.94 2.69
827 842 3.072468 TTGGACGCGTCTAGGGGG 61.072 66.667 35.50 0.00 37.07 5.40
828 843 1.601419 TTCTTGGACGCGTCTAGGGG 61.601 60.000 35.50 22.94 37.07 4.79
829 844 0.245539 TTTCTTGGACGCGTCTAGGG 59.754 55.000 35.50 25.16 38.93 3.53
830 845 2.074547 TTTTCTTGGACGCGTCTAGG 57.925 50.000 35.50 30.43 0.00 3.02
894 909 1.221414 GAGAGCGCACAACTTCTGTT 58.779 50.000 11.47 0.00 35.47 3.16
895 910 0.104855 TGAGAGCGCACAACTTCTGT 59.895 50.000 11.47 0.00 39.56 3.41
896 911 1.220529 TTGAGAGCGCACAACTTCTG 58.779 50.000 11.47 0.00 0.00 3.02
897 912 1.953559 TTTGAGAGCGCACAACTTCT 58.046 45.000 11.47 1.19 0.00 2.85
898 913 2.755836 TTTTGAGAGCGCACAACTTC 57.244 45.000 11.47 0.00 0.00 3.01
925 940 4.439289 CGGAAGAAGAATGGGCAAGATTTC 60.439 45.833 0.00 0.00 0.00 2.17
933 948 2.472909 CGGCGGAAGAAGAATGGGC 61.473 63.158 0.00 0.00 0.00 5.36
1133 1151 5.218885 CGAAGATGTAAGCAGGTAGATCTG 58.781 45.833 5.18 0.00 35.05 2.90
1182 1236 1.265568 CGAAACCTCGGATACACACG 58.734 55.000 0.00 0.00 41.57 4.49
1225 1280 0.107214 TTAGGAGGCGCAATGGAAGG 60.107 55.000 10.83 0.00 0.00 3.46
1369 1425 8.139989 GCAAATATATGCAGAATGAGAAAGGTT 58.860 33.333 0.00 0.00 45.70 3.50
1393 1449 5.473504 TCTGTCGCATATCTACAGATTAGCA 59.526 40.000 12.89 2.38 43.45 3.49
1405 1461 5.048364 AGGTATCTTGACTCTGTCGCATATC 60.048 44.000 0.00 0.00 34.95 1.63
1421 1477 5.378230 TGATGCCAGAATCAAGGTATCTT 57.622 39.130 18.03 0.00 44.37 2.40
1606 1678 5.213891 TGACCGAAGCATATGTACATCAT 57.786 39.130 12.68 2.01 40.25 2.45
1613 1685 5.163405 ACTGAACTATGACCGAAGCATATGT 60.163 40.000 4.29 0.00 0.00 2.29
1624 1696 9.559958 CACAAAATTTGATACTGAACTATGACC 57.440 33.333 13.19 0.00 0.00 4.02
1700 1781 7.831193 AGATAAGAAAATAGCACACAGATGGTT 59.169 33.333 0.00 0.00 0.00 3.67
1801 1882 2.042686 TTGAGCTGTTCAAGTGCTGT 57.957 45.000 2.62 0.00 40.82 4.40
1830 1911 6.072286 CCCCATACTTATCAATGCATTCTGTC 60.072 42.308 9.53 0.00 0.00 3.51
1917 1998 5.530171 TCAGCATTGGCATTTTAAAAGCAAA 59.470 32.000 18.00 15.02 44.61 3.68
1964 2046 7.876371 TCTCAGGAAATTAAGGAATGAGGATT 58.124 34.615 0.00 0.00 34.77 3.01
2170 2252 7.265647 TGAACACGAAGGAAAAATGTTATCA 57.734 32.000 0.00 0.00 33.76 2.15
2176 2258 4.228912 AGCTGAACACGAAGGAAAAATG 57.771 40.909 0.00 0.00 0.00 2.32
2368 2450 8.982685 AGTACATGATAGCAATATTTCAACTCG 58.017 33.333 0.00 0.00 0.00 4.18
2373 2455 7.977818 AGGGAGTACATGATAGCAATATTTCA 58.022 34.615 0.00 0.00 0.00 2.69
2406 2488 6.988522 AGCCTACCAAAACGTCATAAATTTT 58.011 32.000 0.00 0.00 0.00 1.82
2411 2493 4.546829 AGAGCCTACCAAAACGTCATAA 57.453 40.909 0.00 0.00 0.00 1.90
2561 2643 6.183360 CGAATATCAATCCAGTTCCTTGCTTT 60.183 38.462 0.00 0.00 0.00 3.51
2620 2702 5.349817 ACAGTAATGAGAAAATCTGTCAGCG 59.650 40.000 0.00 0.00 31.81 5.18
2662 2744 6.827586 TTTCTAGGTGGAACGCATATTTTT 57.172 33.333 0.00 0.00 43.02 1.94
2997 3080 4.201861 GCTTAAGCTATGCTGAACAAGACC 60.202 45.833 20.38 0.00 39.62 3.85
3060 3143 2.827322 CAAAAATCTGATGTGGAGGGCA 59.173 45.455 0.00 0.00 0.00 5.36
3091 3174 6.382282 TCTTCCTCTCTCTCATTAATTCTGCA 59.618 38.462 0.00 0.00 0.00 4.41
3276 3370 8.804204 ACCCGTATTTCTATTACCTAGATTCTG 58.196 37.037 0.00 0.00 36.35 3.02
3348 3442 9.350951 ACCTTTAGTTTGTATTGCTAGAAACTT 57.649 29.630 11.80 0.80 44.61 2.66
3453 3547 6.969993 AAACTGCACCTAAAGATTTTACCA 57.030 33.333 0.00 0.00 0.00 3.25
3583 3677 0.615331 TCCAGAAAGCTAGCCCACTG 59.385 55.000 12.13 16.69 0.00 3.66
3894 3988 1.284198 AGATGCCAATCTGTCAGCCTT 59.716 47.619 0.00 0.00 41.80 4.35
3961 4055 5.627499 TCATCATTGCTGTAAGTGGAAAC 57.373 39.130 0.00 0.00 35.30 2.78
4030 4172 3.612860 GTGCATAGTCTACCACAAACGAG 59.387 47.826 0.00 0.00 0.00 4.18
4120 4262 3.389329 CAGGATGTTAGGCACTAGGTGAT 59.611 47.826 1.57 0.00 44.25 3.06
4158 4300 6.310224 AGAACAAACAAAATTGGAACGACAAG 59.690 34.615 0.00 0.00 34.56 3.16
4534 4676 0.454957 CAAAACTTCATCCAGCGGCG 60.455 55.000 0.51 0.51 0.00 6.46
4538 4680 6.739112 AGTAGAAAACAAAACTTCATCCAGC 58.261 36.000 0.00 0.00 0.00 4.85
4563 4707 6.938596 TGTTCTGATTGAGACATGAGAAACAT 59.061 34.615 0.00 0.00 40.17 2.71
4839 4983 7.603784 GGTTTAAAATCAGAATCAGGTGCAAAT 59.396 33.333 0.00 0.00 0.00 2.32
4918 5062 1.151668 GCATATCAAGCTGGCGGTAG 58.848 55.000 0.00 0.00 0.00 3.18
4965 5109 9.712305 TTTTTAGAGAGTGATTCTTAGAACAGG 57.288 33.333 0.00 0.00 35.87 4.00
4992 5136 6.391227 ACCTGGTGTTCTTAACAGAAATTG 57.609 37.500 0.00 0.00 43.10 2.32
5061 5205 3.415457 AGCTTGGTCTCTGGAAAGAAG 57.585 47.619 0.00 0.00 0.00 2.85
5151 5295 5.866207 ACGAAGGAATTACCAGAAGAGTTT 58.134 37.500 0.00 0.00 42.04 2.66
5180 5324 3.320826 GCAGGTTTTGAAAGGGCTTTCTA 59.679 43.478 0.00 0.00 46.67 2.10
5188 5332 3.315191 TCTTTCGAGCAGGTTTTGAAAGG 59.685 43.478 16.50 5.39 42.46 3.11
5236 5380 6.252599 AGAGATATATCTGGGCAACAACAA 57.747 37.500 20.05 0.00 37.25 2.83
5266 5410 6.455360 AGCTATCACATTTAACAACATGGG 57.545 37.500 0.00 0.00 0.00 4.00
5275 5419 9.582431 GTCTGTACTGTAAGCTATCACATTTAA 57.418 33.333 0.00 0.00 37.60 1.52
5697 6016 5.106712 TGTTCGTGGAATTGCTAAGTTGATC 60.107 40.000 0.00 0.00 0.00 2.92
5754 6077 7.865889 CCTTTGGTTGATTTACTTTACCTTCAC 59.134 37.037 0.00 0.00 0.00 3.18
5782 6105 2.250921 TGTACGAATCCTTGGGGGTA 57.749 50.000 0.00 0.00 36.25 3.69
5783 6106 1.364269 TTGTACGAATCCTTGGGGGT 58.636 50.000 0.00 0.00 36.25 4.95
5784 6107 2.729028 ATTGTACGAATCCTTGGGGG 57.271 50.000 0.00 0.00 0.00 5.40
5785 6108 3.473625 GGTATTGTACGAATCCTTGGGG 58.526 50.000 0.00 0.00 0.00 4.96
5786 6109 3.473625 GGGTATTGTACGAATCCTTGGG 58.526 50.000 0.00 0.00 0.00 4.12
5787 6110 3.473625 GGGGTATTGTACGAATCCTTGG 58.526 50.000 0.00 0.00 0.00 3.61
5788 6111 3.118186 TGGGGGTATTGTACGAATCCTTG 60.118 47.826 0.00 0.00 0.00 3.61
5789 6112 3.116959 TGGGGGTATTGTACGAATCCTT 58.883 45.455 0.00 0.00 0.00 3.36
5790 6113 2.766736 TGGGGGTATTGTACGAATCCT 58.233 47.619 0.00 0.00 0.00 3.24
5791 6114 3.473625 CTTGGGGGTATTGTACGAATCC 58.526 50.000 0.00 0.00 0.00 3.01
5792 6115 3.135167 TCCTTGGGGGTATTGTACGAATC 59.865 47.826 0.00 0.00 36.25 2.52
5793 6116 3.116959 TCCTTGGGGGTATTGTACGAAT 58.883 45.455 0.00 0.00 36.25 3.34
5794 6117 2.236893 GTCCTTGGGGGTATTGTACGAA 59.763 50.000 0.00 0.00 36.25 3.85
5795 6118 1.832998 GTCCTTGGGGGTATTGTACGA 59.167 52.381 0.00 0.00 36.25 3.43
5796 6119 1.555992 TGTCCTTGGGGGTATTGTACG 59.444 52.381 0.00 0.00 36.25 3.67
5797 6120 2.678769 CGTGTCCTTGGGGGTATTGTAC 60.679 54.545 0.00 0.00 36.25 2.90
5798 6121 1.555992 CGTGTCCTTGGGGGTATTGTA 59.444 52.381 0.00 0.00 36.25 2.41
5799 6122 0.326927 CGTGTCCTTGGGGGTATTGT 59.673 55.000 0.00 0.00 36.25 2.71
5800 6123 0.616371 TCGTGTCCTTGGGGGTATTG 59.384 55.000 0.00 0.00 36.25 1.90
5801 6124 0.909623 CTCGTGTCCTTGGGGGTATT 59.090 55.000 0.00 0.00 36.25 1.89
5802 6125 0.981277 CCTCGTGTCCTTGGGGGTAT 60.981 60.000 0.00 0.00 36.25 2.73
5803 6126 1.611261 CCTCGTGTCCTTGGGGGTA 60.611 63.158 0.00 0.00 36.25 3.69
5804 6127 2.765705 ATCCTCGTGTCCTTGGGGGT 62.766 60.000 0.00 0.00 36.25 4.95
5805 6128 1.562672 AATCCTCGTGTCCTTGGGGG 61.563 60.000 0.00 0.00 0.00 5.40
5806 6129 0.328258 AAATCCTCGTGTCCTTGGGG 59.672 55.000 0.00 0.00 0.00 4.96
5807 6130 1.453155 CAAATCCTCGTGTCCTTGGG 58.547 55.000 0.00 0.00 0.00 4.12
5808 6131 1.271379 ACCAAATCCTCGTGTCCTTGG 60.271 52.381 0.00 0.00 39.38 3.61
5809 6132 2.185004 ACCAAATCCTCGTGTCCTTG 57.815 50.000 0.00 0.00 0.00 3.61
5810 6133 2.552373 GGAACCAAATCCTCGTGTCCTT 60.552 50.000 0.00 0.00 36.50 3.36
5811 6134 1.003233 GGAACCAAATCCTCGTGTCCT 59.997 52.381 0.00 0.00 36.50 3.85
5980 6311 4.202141 CCAAAAAGACTTTGTGATGGCTGA 60.202 41.667 18.13 0.00 0.00 4.26
6523 6854 0.827507 GGCCAAAGACTTTCCAGGCA 60.828 55.000 22.43 0.00 43.72 4.75
6745 7077 6.395629 AGAAATGCAAGTCATCCAATTGAAG 58.604 36.000 7.12 0.00 33.40 3.02
6792 7124 3.567478 ACAAGAATACAGGATCTGCCC 57.433 47.619 0.00 0.00 37.37 5.36
6882 7240 3.977427 TGTAGTCACTTGTGCACACTAG 58.023 45.455 21.56 18.00 39.49 2.57
6957 7315 3.070018 CAGAAGAGTCACAACATCACCC 58.930 50.000 0.00 0.00 0.00 4.61
6979 7337 3.249799 TGTAAGCTCGGAACACACATTTG 59.750 43.478 0.00 0.00 0.00 2.32
7050 7408 8.764287 CAAATATTTCCAAAGAAAGTTGTGGTC 58.236 33.333 0.00 0.00 44.96 4.02
7296 7773 6.865205 GCATGTTTACTTTCTTCAAAGAGCAT 59.135 34.615 1.50 0.00 41.60 3.79
7326 7804 5.757886 TCCGCAAAATAAGTTGAGAAACAG 58.242 37.500 0.00 0.00 30.66 3.16
7329 7807 6.385649 ACTTCCGCAAAATAAGTTGAGAAA 57.614 33.333 0.00 0.00 30.66 2.52
7345 7823 1.797025 ACTGAACTAGCAACTTCCGC 58.203 50.000 0.00 0.00 0.00 5.54
7347 7825 5.334182 GCTACAAACTGAACTAGCAACTTCC 60.334 44.000 0.00 0.00 33.24 3.46
7433 7911 3.562141 AGGTATCGTCTGTGATCTCTTCG 59.438 47.826 0.00 0.00 0.00 3.79
7460 7938 2.027625 CCCGCTTCTCGTTTCGCTT 61.028 57.895 0.00 0.00 36.19 4.68
7510 7988 6.158695 AGCCTCCAATACCTCTAAATCAAGAA 59.841 38.462 0.00 0.00 0.00 2.52
7534 8012 2.362077 AGCAACACAAAAGGGCTACAAG 59.638 45.455 0.00 0.00 32.09 3.16
7535 8013 2.383855 AGCAACACAAAAGGGCTACAA 58.616 42.857 0.00 0.00 32.09 2.41
7536 8014 2.065899 AGCAACACAAAAGGGCTACA 57.934 45.000 0.00 0.00 32.09 2.74
7537 8015 4.217550 TCATAAGCAACACAAAAGGGCTAC 59.782 41.667 0.00 0.00 33.80 3.58
7538 8016 4.402829 TCATAAGCAACACAAAAGGGCTA 58.597 39.130 0.00 0.00 33.80 3.93
7539 8017 3.230134 TCATAAGCAACACAAAAGGGCT 58.770 40.909 0.00 0.00 36.13 5.19
7540 8018 3.658757 TCATAAGCAACACAAAAGGGC 57.341 42.857 0.00 0.00 0.00 5.19
7541 8019 5.355596 TGTTTCATAAGCAACACAAAAGGG 58.644 37.500 0.00 0.00 0.00 3.95
7542 8020 6.312426 TGTTGTTTCATAAGCAACACAAAAGG 59.688 34.615 15.24 0.00 44.82 3.11
7543 8021 7.288317 TGTTGTTTCATAAGCAACACAAAAG 57.712 32.000 15.24 0.00 44.82 2.27
7567 8048 1.217057 ACACAGCCCCTGGAATGGAT 61.217 55.000 0.00 0.00 35.51 3.41
7631 8112 1.228124 CCCAAAGAACTCCGTGCCA 60.228 57.895 0.00 0.00 0.00 4.92
7644 8125 1.501170 TGAGGTTCCACAATCCCCAAA 59.499 47.619 0.00 0.00 0.00 3.28
7749 8230 2.096496 CGGTTCCTTTCTGTGATGATGC 59.904 50.000 0.00 0.00 0.00 3.91
7892 8375 5.310451 ACAATTTCGGTTGGTACATGTAGT 58.690 37.500 5.62 0.00 39.30 2.73
7967 8451 3.055094 GGTTATCTTCTCACTCTGGGCAA 60.055 47.826 0.00 0.00 0.00 4.52
8079 8563 2.601067 TCGCCTACGTGGTTCCCA 60.601 61.111 0.00 0.00 41.18 4.37
8109 8593 0.105039 AATCCTGGAACGATCTCCGC 59.895 55.000 0.00 0.00 43.32 5.54
8258 8745 3.336509 ACATAGACATAGGGAGGCAGT 57.663 47.619 0.00 0.00 0.00 4.40
8259 8746 4.774726 ACATACATAGACATAGGGAGGCAG 59.225 45.833 0.00 0.00 0.00 4.85
8261 8748 4.528596 ACACATACATAGACATAGGGAGGC 59.471 45.833 0.00 0.00 0.00 4.70
8262 8749 6.013379 AGACACATACATAGACATAGGGAGG 58.987 44.000 0.00 0.00 0.00 4.30
8263 8750 7.531857 AAGACACATACATAGACATAGGGAG 57.468 40.000 0.00 0.00 0.00 4.30
8264 8751 7.686859 GCAAAGACACATACATAGACATAGGGA 60.687 40.741 0.00 0.00 0.00 4.20
8265 8752 6.425114 GCAAAGACACATACATAGACATAGGG 59.575 42.308 0.00 0.00 0.00 3.53
8266 8753 6.425114 GGCAAAGACACATACATAGACATAGG 59.575 42.308 0.00 0.00 0.00 2.57
8267 8754 6.986231 TGGCAAAGACACATACATAGACATAG 59.014 38.462 0.00 0.00 0.00 2.23
8268 8755 6.761242 GTGGCAAAGACACATACATAGACATA 59.239 38.462 0.00 0.00 41.94 2.29
8269 8756 5.586243 GTGGCAAAGACACATACATAGACAT 59.414 40.000 0.00 0.00 41.94 3.06
8270 8757 4.935205 GTGGCAAAGACACATACATAGACA 59.065 41.667 0.00 0.00 41.94 3.41
8271 8758 5.470845 GTGGCAAAGACACATACATAGAC 57.529 43.478 0.00 0.00 41.94 2.59
8336 8824 0.107848 GTTAGACCATGACACGGGGG 60.108 60.000 0.00 0.00 0.00 5.40
8337 8825 0.902531 AGTTAGACCATGACACGGGG 59.097 55.000 0.00 0.00 0.00 5.73
8410 8913 1.403323 GTCCTACCTGTACCGCTGTAC 59.597 57.143 11.15 11.15 46.22 2.90
8411 8914 1.004628 TGTCCTACCTGTACCGCTGTA 59.995 52.381 0.00 0.00 0.00 2.74
8412 8915 0.251474 TGTCCTACCTGTACCGCTGT 60.251 55.000 0.00 0.00 0.00 4.40
8413 8916 0.892755 TTGTCCTACCTGTACCGCTG 59.107 55.000 0.00 0.00 0.00 5.18
8414 8917 1.274447 GTTTGTCCTACCTGTACCGCT 59.726 52.381 0.00 0.00 0.00 5.52
8415 8918 1.718396 GTTTGTCCTACCTGTACCGC 58.282 55.000 0.00 0.00 0.00 5.68
8416 8919 1.541147 TCGTTTGTCCTACCTGTACCG 59.459 52.381 0.00 0.00 0.00 4.02
8417 8920 2.821969 TCTCGTTTGTCCTACCTGTACC 59.178 50.000 0.00 0.00 0.00 3.34
8442 8945 1.227999 AACCACTCATCCGTTGCGTG 61.228 55.000 0.20 0.20 40.11 5.34
8501 9004 2.439507 CCCATTAGCCTAGCCAAAGAGA 59.560 50.000 0.00 0.00 0.00 3.10
8570 9075 2.147958 GACAATACCGTTGAGCCAACA 58.852 47.619 15.40 0.69 43.70 3.33
8574 9079 2.094762 AGTGACAATACCGTTGAGCC 57.905 50.000 0.00 0.00 0.00 4.70
8875 9386 2.667418 CAGGACCAGGGCACTCAG 59.333 66.667 0.00 0.00 0.00 3.35
8887 9398 4.416738 GCAGGCAGGGACCAGGAC 62.417 72.222 0.00 0.00 0.00 3.85
9119 9630 3.250040 ACAACGGTCTGCTTACAATTGTC 59.750 43.478 15.85 1.15 28.36 3.18
9121 9632 3.554524 CACAACGGTCTGCTTACAATTG 58.445 45.455 3.24 3.24 0.00 2.32
9127 9638 1.338674 CCATCCACAACGGTCTGCTTA 60.339 52.381 0.00 0.00 35.57 3.09
9128 9639 0.606401 CCATCCACAACGGTCTGCTT 60.606 55.000 0.00 0.00 35.57 3.91
9129 9640 1.003355 CCATCCACAACGGTCTGCT 60.003 57.895 0.00 0.00 35.57 4.24
9131 9642 0.673644 GGTCCATCCACAACGGTCTG 60.674 60.000 0.00 0.00 35.57 3.51
9133 9644 1.376812 GGGTCCATCCACAACGGTC 60.377 63.158 0.00 0.00 38.11 4.79
9134 9645 2.754375 GGGTCCATCCACAACGGT 59.246 61.111 0.00 0.00 38.11 4.83
9135 9646 2.435938 CGGGTCCATCCACAACGG 60.436 66.667 0.00 0.00 38.11 4.44
9136 9647 2.435938 CCGGGTCCATCCACAACG 60.436 66.667 0.00 0.00 38.11 4.10
9137 9648 1.078426 CTCCGGGTCCATCCACAAC 60.078 63.158 0.00 0.00 38.11 3.32
9138 9649 0.252330 TACTCCGGGTCCATCCACAA 60.252 55.000 0.00 0.00 38.11 3.33
9139 9650 0.686441 CTACTCCGGGTCCATCCACA 60.686 60.000 0.00 0.00 38.11 4.17
9140 9651 0.686769 ACTACTCCGGGTCCATCCAC 60.687 60.000 0.00 0.00 38.11 4.02
9141 9652 0.928505 TACTACTCCGGGTCCATCCA 59.071 55.000 0.00 0.00 38.11 3.41
9142 9653 1.133544 AGTACTACTCCGGGTCCATCC 60.134 57.143 0.00 0.00 0.00 3.51
9166 9677 9.669887 TTGGTGTAAACTCTCAAGTAGTTAAAA 57.330 29.630 0.00 0.00 36.17 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.